Citrus Sinensis ID: 005817

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670------
Protein Sequence
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLCFS
Secondary Structure (PSIPRED)
ccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHcccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEcc
Coil and Loop (DISEMBL)
MGPGLEISYWLTLrsgrchsfpsltsyqftESTHFLAKSLAMADVVQYRLERMVDELDDLerrglftrHEISEIVKQRRKFEyrlkrpsplkqdYLAYIEYESQLDALRRLRKKsigrdegreRRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRfhpkvpgvWIYAAAWEFDHNLNVTAARALMQnglrvcptsEELWVEYLRMELTYLNKLKARKValgedkgtlvrdhrdadekrwinenkglfmpldgeventdgsqpenmesqksVDLFREQGLRVLQTIYSGAvealpssfnLRQRFFEIVEatnlaqsddmHDKILSDMQRDFLVDPKYWDWLARLKmtdsvskdgtsedivpSQMQKAIQVYEEALknvpssmiFDLYTKFLMDmiapkkeetrdselpshVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRcvtrnsfspskADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVakdgggesgfslPSAIINLVIQKDGIQQAREMYKRFLalprpglvlyQNCIELENnlasvgdkdsLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLCFS
Flexible Loop (DISEMBL)
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDlerrglftrheiseivkqrrkfeyrlkrpsplkqdylAYIEYESQLDALRRlrkksigrdegrerrvskkmkksvsdfsgvaRILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKArkvalgedkgtlvrdhrdadekrwinenkglfmplDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTdsvskdgtsedivpsQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKeetrdselpshVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCsgklsdsvqLWLLRISVEIrcvtrnsfspskaDILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLasvgdkdsLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLCFS
Low Complexity Region (SEG)
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVskkmkksvsdfsGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLCFS
Disordered region (IsUnstruct)
****LEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDAL****************************FSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVR********RWINENKGLF*************************LFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT*******************AIQVYEEALKNVPSSMIFDLYTKFLMDMIA*************HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLCF*
Disordered Region (DISOPRED)
***GLEISYWLTLRSGRCHSFPSL***QFT*STHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSF******
Disordered Region (DISEMBL)
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSI*******************DFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLCFS
Disordered Region (DISPRO)
*GPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV********************PLDG*VENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSV****TSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLCFS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMxxxxxxxxxxxxxxxxxxxxxGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLCFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	676	2.2.26 [Sep-21-2011]
Q9NYH9	597	U3 small nucleolar RNA-as	yes	no	0.804	0.911	0.256	1e-38
Q8VCY6	597	U3 small nucleolar RNA-as	yes	no	0.809	0.916	0.252	4e-38
O60188	488	U3 small nucleolar RNA-as	yes	no	0.288	0.399	0.364	3e-32
Q02354	440	U3 small nucleolar RNA-as	yes	no	0.291	0.447	0.342	8e-31
Q54WN5	609	U3 small nucleolar RNA-as	yes	no	0.622	0.691	0.234	6e-21

>sp|Q9NYH9|UTP6_HUMAN U3 small nucleolar RNA-associated protein 6 homolog OS=Homo sapiens GN=UTP6 PE=1 SV=2

 Score =  162 bits (409), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 163/635 (25%), Positives = 282/635 (44%), Gaps = 91/635 (14%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EY+++R +  K+D++ Y++Y
Sbjct: 1   MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E  L  L + R+  IG             KK   + S V R+  +++ A  ++K D++LW
Sbjct: 61  EINLLELIQRRRTRIGYS----------FKKDEIENSIVHRVQGVFQRASAKWKDDVQLW 110

Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
             Y+ FC++     R+ KV + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct: 111 LSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL 280
             P   +L+ EY RMEL +  KL+  K     +K ++                       
Sbjct: 171 FHPECPKLYKEYFRMELMHAEKLRKEKEEF--EKASM----------------------- 205

Query: 281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT 340
             +VEN D S+ E ++ +            +   IY  +V  +  +         I +  
Sbjct: 206 --DVENPDYSE-EILKGE------------LAWIIYKNSVSIIKGA-EFHVSLLSIAQLF 249

Query: 341 NLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDI----VPSQMQ 394
           + A+  D+  +I  D+Q     DP  WD++AR  L++     +  T++      V  + +
Sbjct: 250 DFAK--DLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAVEVGRKEE 307

Query: 395 KAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA 454
           +   VYEEA+K +P+  ++  Y  F ++        T+ S         +   +TV+ KA
Sbjct: 308 RCCAVYEEAVKTLPTEAMWKCYITFCLERF------TKKSNSGFLRGKRLERTMTVFRKA 361

Query: 455 EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRN 514
             +  L+E    +     L    L EA ++A    +    DS  +W L++ V I      
Sbjct: 362 HELKLLSECQYKQLSVSLLCYNFLREALEVAVA-GTELFRDSGTMWQLKLQVLI-----E 415

Query: 515 SFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDK--LVEIALISVA 572
           S SP   DI  +FE     L     L    LW+   ++    K   D   + + AL++V 
Sbjct: 416 SKSP---DIAMLFEEAFVHLKPQVCL---PLWISWAEWSEGAKSQEDTEAVFKKALLAVI 469

Query: 573 KDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASV 631
               G    +L +  ++   +  G ++AR ++K  L   RP  V  ++  I+ E    S 
Sbjct: 470 ----GADSVTLKNKYLDWAYRSGGYKKARAVFKS-LQESRPFSVDFFRKMIQFEKEQESC 524

Query: 632 GDKDSLVNARKLFESALATY-DQNTSLWRDYYSTE 665
               ++ N R+ +E AL  +   ++ LW DY   E
Sbjct: 525 ----NMANIREYYERALREFGSADSDLWMDYMKEE 555

Involved in nucleolar processing of pre-18S ribosomal RNA.
Homo sapiens (taxid: 9606)

>sp|Q8VCY6|UTP6_MOUSE U3 small nucleolar RNA-associated protein 6 homolog OS=Mus musculus GN=Utp6 PE=2 SV=1

 Score =  160 bits (404), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 163/645 (25%), Positives = 287/645 (44%), Gaps = 98/645 (15%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EY++ R + LK+D++ Y++Y
Sbjct: 1   MAEIIQERIEDRIPELEQLERIGLFSHAEIKAIIKKASDLEYKIHRRTLLKEDFINYVQY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E  L  L + R+           R+    KK   ++S V R+  ++  A  ++K D++LW
Sbjct: 61  EINLLELIQRRRA----------RIKYSFKKDEIEYSMVHRVQGVFGRASAKWKDDVQLW 110

Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
             Y+ FC++      + K+ + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct: 111 LSYIVFCKKWGTKTHLSKIFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL 280
             P   +L+ EY RMEL +  KL+  K     +K  +  D  D D    I         L
Sbjct: 171 FHPECPKLYQEYFRMELMHAEKLRKEKQEF--EKAAM--DMGDFDHPEEI---------L 217

Query: 281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT 340
            GE                           + + IY  ++  +  +         I +  
Sbjct: 218 KGE---------------------------LARIIYKNSISKIKGA-EFHVSLLAIAQLF 249

Query: 341 NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ-- 398
           + A+  D+  +I  D+Q     DP  WD++AR ++ +  S+ G  + +  S+  KA++  
Sbjct: 250 DFAK--DLQKEIYDDLQALHTDDPLTWDYVARREL-EIESQPGEEQPV--SKQAKAVEMG 304

Query: 399 --------VYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450
                   VYEEA+K +P+  ++  Y  F ++  + K      S +P   +  +   +  
Sbjct: 305 RREERCCAVYEEAVKALPTEAMWKCYITFCLERFSKK-----TSSVPLRGQR-LERTMLA 358

Query: 451 YEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC 510
           + KA  +  L+E    +++ L L+     EA ++ A+  +    DSV +W  ++ V I  
Sbjct: 359 FRKAHELKLLSEVQYKQWIDLLLRQDLFKEALQV-AEAGTELFKDSVTMWQTKLQVLI-- 415

Query: 511 VTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDK--LVEIAL 568
              +S SP   D+   FE     L     L    LW+   ++  + K   D   + + A+
Sbjct: 416 ---DSKSP---DVEMRFEEAFAHLKPQVCL---PLWISWAEWSESAKSQEDTEAIFKKAI 466

Query: 569 ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENN 627
           I+V     G S  +L    ++   +  G ++AR ++K  L   RP  V  ++  ++ E  
Sbjct: 467 IAVT----GASSVTLKEKYLDWAYRSGGYKKARAVFKS-LQESRPFSVEFFRKMMQFEKE 521

Query: 628 LASVGDKDSLVNARKLFESALATYDQNTS-LWRDYYSTETKVSFS 671
                +   +VN R+ +E AL  +  + S LW DY   E    F 
Sbjct: 522 ----QEPCKMVNLREYYERALREFGTSDSDLWMDYIKEELNHPFG 562

Involved in nucleolar processing of pre-18S ribosomal RNA.

Mus musculus (taxid: 10090)

>sp|O60188|UTP6_SCHPO U3 small nucleolar RNA-associated protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp6 PE=3 SV=1

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 11/206 (5%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MA+ VQY +E+ V EL+DL  + +F R EI+ I+K RR FE +L R      D+L+YI+Y
Sbjct: 1   MAEKVQYYMEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E  L+ LR            R +R++   K ++SD++G  ++L ++  A  +F GD+ LW
Sbjct: 61  EINLETLR----------AKRHKRLNITGKITISDYAGPRKVLFLFLRATNKFFGDVTLW 110

Query: 162 FKYMEFCRQRKNGRM-KKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
             Y+ + ++ K   +  K+    ++ HP    +W+ A   EF  N NV+AARALM   LR
Sbjct: 111 LDYIHYAQKIKAVNIVGKICVAALQKHPNNAELWVVACDHEFSINANVSAARALMNRALR 170

Query: 221 VCPTSEELWVEYLRMELTYLNKLKAR 246
           +   +  +W  Y R+EL+Y+ KL AR
Sbjct: 171 LNQENPVIWAAYFRLELSYMTKLFAR 196

Component of the SSU processome, a pre-ribosomal particle required for the maturation of the 18S rRNA from the 35S pre-rRNA precursor.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q02354|UTP6_YEAST U3 small nucleolar RNA-associated protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP6 PE=1 SV=2

 Score =  135 bits (341), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 116/210 (55%), Gaps = 13/210 (6%)

Query: 46  VQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQL 105
            +Y LE+ + E+DDL  +GLFT++E+S I+K+R  FE+RL        DY+ YI YES +
Sbjct: 4   TRYYLEQCIPEMDDLVEKGLFTKNEVSLIMKKRTDFEHRLNSRGSSINDYIKYINYESNV 63

Query: 106 DALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYM 165
           + LR  R K I         +  K   S+SD+S   RI  IY+    +F  D++ W  Y+
Sbjct: 64  NKLRAKRCKRI---------LQVKKTNSLSDWSIQQRIGFIYQRGTNKFPQDLKFWAMYL 114

Query: 166 EFCRQRKN----GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
            + + R N     ++  +  Q+++ HP    +WI  A +E++ + N  + R + QNGLR 
Sbjct: 115 NYMKARGNQTSYKKIHNIYNQLLKLHPTNVDIWISCAKYEYEVHANFKSCRNIFQNGLRF 174

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALG 251
            P   +LW EY++ EL ++ KL  R+  +G
Sbjct: 175 NPDVPKLWYEYVKFELNFITKLINRRKVMG 204

Component of the SSU processome, a pre-ribosomal particle required for the maturation of the 18S rRNA from the 35S pre-rRNA precursor.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54WN5|UTP6_DICDI U3 small nucleolar RNA-associated protein 6 homolog OS=Dictyostelium discoideum GN=utp6 PE=1 SV=1

 Score =  103 bits (256), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 222/490 (45%), Gaps = 69/490 (14%)

Query: 44  DVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYES 103
           D V + ++++++E   L   G+ ++ E  +I+K+R   E ++   +  K D+L YI+YE 
Sbjct: 2   DRVNFSIDQLLEETSKLVSLGIISKQECKDIMKKREYHEIKIFNRNSHKSDFLTYIKYEL 61

Query: 104 QLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFK 163
           +LD  R   K+   ++   + R+   ++ ++  F            A  +F  D  LW  
Sbjct: 62  ELD--RLFHKRGKAKNIEFDYRLRSALRHAIILFGS----------ATKKFPKDEALWIN 109

Query: 164 YMEFCRQRKN----GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219
            +    +R +    GR+  +    +   P+   +W  AA +EF+ N N+  AR L+Q G+
Sbjct: 110 ALNIRMKRASKEGTGRLFSIALSNL---PRSAKLWKLAATFEFEVNKNIQNARNLIQAGI 166

Query: 220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMP 279
           +   T + LW  +  MELTY+                L  D    D+K    E + + + 
Sbjct: 167 QFNKTDKSLWHYFFLMELTYI--------------SLLFSDITFIDKKIEEEEEEAIKLN 212

Query: 280 LDG-----EVEN----TDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVE-ALPSSFNL 329
           LD      ++E     T G +  + +  K   L R Q   + Q ++  A++ ++   F+ 
Sbjct: 213 LDSLRKSEKIEKDEFITFGKEILSADKLKQSSLIRGQ---IAQIVFRKAIKSSIGQDFDF 269

Query: 330 RQRFFEIV--------EATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVS 380
           R+ F++I         ++ N +   + +  +IL  +  DF  D K + +LA      S+ 
Sbjct: 270 RKHFYKIASKFLDIGKDSENPMGAGELLQKEILESLVTDFPNDDKTYIFLA------SIE 323

Query: 381 KDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHV 440
           +  +SE  +  ++  + ++  + L  + S      Y  F+  +I   K   ++++L   +
Sbjct: 324 QSKSSEPSLLKRLNNSTKILNQGLTIIKSESYLFNYIHFIRQIIVDIK--LKENKL---I 378

Query: 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL-SDSVQL 499
           E+    LL  Y+ +     L E     Y+ L L+LGK ++A K++ +  S KL  +S QL
Sbjct: 379 ENITDILLKAYKYSIDNNILKESGYQYYIELLLELGKTNDAIKVSEE--SVKLFKNSNQL 436

Query: 500 WLLRISVEIR 509
           W  RI++ I+
Sbjct: 437 WNQRINLLIK 446

Involved in nucleolar processing of pre-18S ribosomal RNA.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	676
225444476	652	PREDICTED: U3 small nucleolar RNA-associ	0.921	0.955	0.725	0.0
255554841	652	hepatocellular carcinoma-associated anti	0.924	0.958	0.693	0.0
356521999	655	PREDICTED: U3 small nucleolar RNA-associ	0.926	0.955	0.658	0.0
356563026	649	PREDICTED: U3 small nucleolar RNA-associ	0.921	0.959	0.665	0.0
224096798	643	predicted protein [Populus trichocarpa]	0.906	0.953	0.665	0.0
357480335	647	U3 small nucleolar RNA-associated protei	0.917	0.958	0.631	0.0
357480337	665	U3 small nucleolar RNA-associated protei	0.917	0.932	0.614	0.0
449433970	651	PREDICTED: U3 small nucleolar RNA-associ	0.924	0.960	0.641	0.0
297799154	652	hypothetical protein ARALYDRAFT_913702 [	0.917	0.950	0.615	0.0
15234413	648	uncharacterized protein [Arabidopsis tha	0.917	0.956	0.606	0.0

>gi|225444476|ref|XP_002272817.1| PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Vitis vinifera] gi|302144122|emb|CBI23227.3| unnamed protein product [Vitis vinifera]

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/633 (72%), Positives = 539/633 (85%), Gaps = 10/633 (1%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQYRLERMV+ELDDLERRG+F+R EI+EIVKQRRKFEYRLKRPSPLKQDYLAYIEY
Sbjct: 1   MADVVQYRLERMVNELDDLERRGVFSRREIAEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E QLD+LRRLRKKS+ R+        KK KKSVSDF+GV+RILEIY+LAVMR+KGDI+LW
Sbjct: 61  EKQLDSLRRLRKKSVARE------AKKKTKKSVSDFAGVSRILEIYQLAVMRYKGDIDLW 114

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR+R+NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN TAARALMQ+GLRV
Sbjct: 115 FRYLEFCRERRNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNATAARALMQSGLRV 174

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LWVEYLRMELTYLNKLKARKVALGED+GTL+ DHRDADEK+W  ENK LFM LD
Sbjct: 175 CPTSEDLWVEYLRMELTYLNKLKARKVALGEDEGTLINDHRDADEKQWREENKDLFMSLD 234

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
            E  + D S  +N ES+K  D+F+EQGL +L+TIYSGAVEA+PS F+LR +FFEI+EA N
Sbjct: 235 EERGSRDVSNRQNEESKKKSDMFQEQGLSILRTIYSGAVEAIPSRFSLRTQFFEILEAIN 294

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           LA S +M  +ILSDM+RDF  +P+YWDWLARL+  DS      S DIVPS++QKA+QVYE
Sbjct: 295 LAGSKEMQKEILSDMKRDFSAEPEYWDWLARLETIDSEITQERSTDIVPSRLQKAVQVYE 354

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYI---SHLLTVYEKAEAMG 458
           EALK +PS+++F+LYTKFLMD I   +E+T++SE  S  EH +   SHLL VYEKAE MG
Sbjct: 355 EALKFLPSAVMFNLYTKFLMDAIVS-REKTKNSEPFSTSEHTVGSLSHLLMVYEKAENMG 413

Query: 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP 518
           CLTED+A ++V+LYLQLGKLDEARKLA K C+GK S +V LWLLR+SVE++ VTR   SP
Sbjct: 414 CLTEDLACQHVSLYLQLGKLDEARKLAEKFCNGKFSGAVYLWLLRVSVEMKYVTRKCPSP 473

Query: 519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGE 578
           SKAD+LSIFELL+ ILTKV+  E+E LWLMALKFF N KH+FDKLV+I+L+S+AKDGG E
Sbjct: 474 SKADLLSIFELLRNILTKVAISEAEGLWLMALKFFSNHKHFFDKLVDISLVSLAKDGGSE 533

Query: 579 SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLV 638
           +GF L SAI+N V+QKDGIQ AREMYKRFLALPRPGL +Y+ CIELE NLA++ DKD LV
Sbjct: 534 NGFCLSSAIVNFVLQKDGIQSAREMYKRFLALPRPGLPMYKICIELELNLAAINDKDCLV 593

Query: 639 NARKLFESALATYDQNTSLWRDYYSTETKVSFS 671
           NARKLFESAL TYDQ+ +LW+DYYS E K+  S
Sbjct: 594 NARKLFESALTTYDQDINLWQDYYSMEIKMGTS 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554841|ref|XP_002518458.1| hepatocellular carcinoma-associated antigen, putative [Ricinus communis] gi|223542303|gb|EEF43845.1| hepatocellular carcinoma-associated antigen, putative [Ricinus communis]

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/630 (69%), Positives = 519/630 (82%), Gaps = 5/630 (0%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MAD VQYRLERMVDELDDLERRG FT  EI+EIVKQRRKFEYRLKRPSPLKQDYLAYIEY
Sbjct: 1   MADTVQYRLERMVDELDDLERRGFFTHQEIAEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E+QLD LRRLRKKS+ RD   + + +KKMK SVSDF+GV+RI++IYRLAV R+KGDI+LW
Sbjct: 61  ETQLDTLRRLRKKSVARD--LKEKGNKKMKMSVSDFAGVSRIVDIYRLAVTRYKGDIDLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR R+NGRMKKVLAQ+IRFHPKVPGVWIYAAAWEFDHNLNV AARALMQ+GLRV
Sbjct: 119 FRYLEFCRARRNGRMKKVLAQLIRFHPKVPGVWIYAAAWEFDHNLNVAAARALMQSGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CP SE+LW+EYLRMELTYLNKLKARKVALGED GTL+RDHRDADE+ W +EN G+FM LD
Sbjct: 179 CPNSEDLWIEYLRMELTYLNKLKARKVALGEDTGTLLRDHRDADEQHWRDENNGMFMSLD 238

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
            E  N +G    N+  +   DLFREQGL +LQTIYSGA+EALPSSF LR+R FEI EAT 
Sbjct: 239 EERGNNNGI---NVSVEDKADLFREQGLNILQTIYSGAIEALPSSFGLRKRLFEIFEATE 295

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           LA S+DM +++L+DM+RDF  D +YWDWLARL++TDS+S    +E  +P Q+QKA+QVYE
Sbjct: 296 LAHSEDMRNQLLNDMKRDFSSDSEYWDWLARLELTDSISMQEMTEGSMPPQLQKAVQVYE 355

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461
           EAL+ V S  +F LY KFLMD+IAPK+E+ + S   SH +H +SHLLT+++KAE  GC++
Sbjct: 356 EALQFVSSPTMFSLYAKFLMDVIAPKREDNQLSGPASHTKHQLSHLLTIFKKAEISGCIS 415

Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
           ED A  YV+ YLQLG+LDEARKLA   CSGKLSDSV+L LLR S+EIR  T N   PS  
Sbjct: 416 EDFACEYVSFYLQLGRLDEARKLAENFCSGKLSDSVKLLLLRASIEIRIFTNNIPRPSDI 475

Query: 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF 581
           D+ SIF LLK  LTKVS  ++E LW+MA+K F  +KHYF++LVE++ ISVAKDGGG+ GF
Sbjct: 476 DLQSIFGLLKNALTKVSISQAEELWVMAIKLFAVEKHYFEQLVEMSFISVAKDGGGDHGF 535

Query: 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNAR 641
           SLPSAI+N V+QK+GIQ ARE YKRFLALPRPGL L + CIELE NLAS+ DK+ L NAR
Sbjct: 536 SLPSAIVNCVLQKNGIQFARETYKRFLALPRPGLALLRTCIELEENLASIHDKECLGNAR 595

Query: 642 KLFESALATYDQNTSLWRDYYSTETKVSFS 671
           KL+ESALAT+DQN  LWRDY++ E K+  S
Sbjct: 596 KLYESALATHDQNVRLWRDYHAMEIKLGTS 625

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521999|ref|XP_003529637.1| PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Glycine max]

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/633 (65%), Positives = 522/633 (82%), Gaps = 7/633 (1%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQYRLERMVDELDDLE+RGLF+R EI+EIVKQRRKFEYRLKRPSPLK+D+LAY+EY
Sbjct: 1   MADVVQYRLERMVDELDDLEQRGLFSRREIAEIVKQRRKFEYRLKRPSPLKEDFLAYVEY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E+QLDALRRLRKKS+ R+  ++   +KK+KKS SDF+G+ RI++IY LA+ R+KGDI+LW
Sbjct: 61  ETQLDALRRLRKKSVARELMKQG--NKKLKKSKSDFAGLLRIMDIYELALKRYKGDIDLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR RKNGRMKK LA VIRFHPKVPG+WIYAAAWEFDHNLNV AARALMQ GLRV
Sbjct: 119 FRYLEFCRLRKNGRMKKALANVIRFHPKVPGIWIYAAAWEFDHNLNVAAARALMQEGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LWVEYLRMELTYLNKLKARKVALGED+GTL RD R +DEK W +EN  LFMPL 
Sbjct: 179 CPTSEDLWVEYLRMELTYLNKLKARKVALGEDQGTLTRDPRSSDEKHWRDENSELFMPLG 238

Query: 282 GEVENTDGSQPENM---ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVE 338
              +        N+   ES+K  +LF E+G+ + QT+Y GAVEA+PSS +LR+RFFEI+E
Sbjct: 239 ERGDGDGDDDRANVGSDESEKKQELFEERGMNIFQTVYGGAVEAVPSSLSLRKRFFEILE 298

Query: 339 ATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ 398
            TNL+  +DM  +IL+DM+RDF   P++WDWLAR +       + + E I+P Q++KA+Q
Sbjct: 299 GTNLSHYEDMCKEILNDMKRDFSTQPEFWDWLARHECDLENDLEISEEGIIP-QVEKAVQ 357

Query: 399 VYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG 458
           VYEEAL+NVPS  +F LY  FL D++A K+ ET  +    H  +YISHLL +YE+AE+MG
Sbjct: 358 VYEEALENVPSGTMFCLYANFLTDIVAHKEGETNINGSSGHAANYISHLLLIYERAESMG 417

Query: 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP 518
           C+TED+A ++V+L+LQL +LDEARKLAAKLCSGKL++SV+LW LRI++EIRC T++S SP
Sbjct: 418 CITEDLACKHVSLHLQLRQLDEARKLAAKLCSGKLAESVELWGLRITIEIRCTTKSS-SP 476

Query: 519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGE 578
           S AD+ S+FELL+ IL KVS  +SE+LWL ALKF+ NQ+ YFDKLVEI+++++ +DGG E
Sbjct: 477 SDADLQSLFELLQQILMKVSVSKSENLWLKALKFYANQRQYFDKLVEISVVTLVRDGGSE 536

Query: 579 SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLV 638
           +GFSL  AI++ + QKDGIQ+ R++YKRFLALPRPGL LY++CI+LE NLAS+GDKD L+
Sbjct: 537 NGFSLSFAIVSFIFQKDGIQKTRDIYKRFLALPRPGLALYRHCIDLETNLASIGDKDGLI 596

Query: 639 NARKLFESALATYDQNTSLWRDYYSTETKVSFS 671
           NARKL+ESALATYDQN SLW+DYY  ETK+  S
Sbjct: 597 NARKLYESALATYDQNVSLWQDYYRMETKMGTS 629

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563026|ref|XP_003549767.1| PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Glycine max]

 Score =  856 bits (2212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/630 (66%), Positives = 523/630 (83%), Gaps = 7/630 (1%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQYRLERMVDELDDLE+RGLF+R EI+EIVKQRRKFEYRLKRPSPLKQD+LAY+EY
Sbjct: 1   MADVVQYRLERMVDELDDLEQRGLFSRREIAEIVKQRRKFEYRLKRPSPLKQDFLAYVEY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E+QLDALRRLRKKS+ R+  ++   +KK+KKS SDF+G+ RI++IY LA+ R+KGDI+LW
Sbjct: 61  ETQLDALRRLRKKSVARELMKQG--NKKLKKSKSDFAGLLRIMDIYELALKRYKGDIDLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F Y+EFCR RKNGRMKK LA VIRFHPKVPGVWIYAAAWEFDHNLNV AARALMQ GLRV
Sbjct: 119 FCYLEFCRLRKNGRMKKALANVIRFHPKVPGVWIYAAAWEFDHNLNVAAARALMQEGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LWVEYLRMELTYLNKLKARKVALGED+GTL RD R +DEK W +EN  LFMPL 
Sbjct: 179 CPTSEDLWVEYLRMELTYLNKLKARKVALGEDQGTLTRDPRSSDEKHWRDENSELFMPLG 238

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
              ++  G+   + ES+K  +LF E G+ + QT+YSGAVEA+PSS +LR+R FEI+E TN
Sbjct: 239 KRGDDDGGANVGSDESEKKQELFEEHGMNIFQTVYSGAVEAVPSSLSLRKRLFEILEGTN 298

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           L+  +DM  +IL+DM+RDF   P++WDWLAR +    +S++G    I+P Q++KA+QVYE
Sbjct: 299 LSHYEDMCKEILNDMKRDFSTQPEFWDWLARHECDLEISEEG----IIP-QVEKAVQVYE 353

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461
           EALKNVPS  +F LY  FL D+IAPK+ ET  +       +YISHLL++YE+AE+MGC+T
Sbjct: 354 EALKNVPSGTMFSLYANFLTDIIAPKEGETDINGSSGCAVNYISHLLSIYERAESMGCIT 413

Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
           ED+A ++V+L+LQL +LDEA+KLAAKLCSGKL++SV+LW LRI++EIRC+T +S SPS A
Sbjct: 414 EDLACKHVSLHLQLRQLDEAQKLAAKLCSGKLAESVELWGLRITIEIRCITGSSSSPSDA 473

Query: 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF 581
           D+ S+FELL+ IL KVS   SE+LWL ALKF+ NQ+ YFDKLVEI+++++ +DGG E+GF
Sbjct: 474 DLQSLFELLQQILMKVSVSRSENLWLKALKFYANQRRYFDKLVEISVVTLVRDGGSENGF 533

Query: 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNAR 641
           SL SAI++ ++QKDGIQ+ R++YKRFLALP PGL LY+ CI+LE NLAS+GDKD L+NAR
Sbjct: 534 SLSSAIVSFILQKDGIQKTRDIYKRFLALPLPGLALYRRCIDLETNLASIGDKDGLINAR 593

Query: 642 KLFESALATYDQNTSLWRDYYSTETKVSFS 671
           KL+ES+LATYDQN SLW+DYY  E K+  S
Sbjct: 594 KLYESSLATYDQNVSLWQDYYRLEIKMGTS 623

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096798|ref|XP_002310740.1| predicted protein [Populus trichocarpa] gi|222853643|gb|EEE91190.1| predicted protein [Populus trichocarpa]

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/633 (66%), Positives = 508/633 (80%), Gaps = 20/633 (3%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MAD VQY+LERMVDELDDLER+G+FTR EI+EIVKQRRKFEYRLKRPSPLKQD+LAYI+Y
Sbjct: 1   MADTVQYKLERMVDELDDLERKGIFTRQEIAEIVKQRRKFEYRLKRPSPLKQDFLAYIDY 60

Query: 102 ESQLDALRRLRKKSIGRD---EGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDI 158
           E+QLD+LRRLRKKS+ R+   +G +RR  ++ KKSVSDF+G++RI+EIYR+AVMRFKGD+
Sbjct: 61  ETQLDSLRRLRKKSVARELEKQGDKRR--RRNKKSVSDFAGISRIVEIYRIAVMRFKGDL 118

Query: 159 ELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218
           ELWF+Y+EFC+ +KNGRMKKVLAQ+IRFHPK PGVWIYAAAWEFDHNLNV+AARALMQNG
Sbjct: 119 ELWFRYLEFCKDKKNGRMKKVLAQLIRFHPKAPGVWIYAAAWEFDHNLNVSAARALMQNG 178

Query: 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFM 278
           LRVCP SE+LWVEYLRMELTYLNKL+ RKVALGE+K  +V D+                M
Sbjct: 179 LRVCPHSEDLWVEYLRMELTYLNKLRVRKVALGEEKENVVHDYD---------------M 223

Query: 279 PLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVE 338
            LD E  N DGS      S+K VDLFRE+GL +LQTIY+GAVEALPSSF LR+R  EI+E
Sbjct: 224 LLDEERGNDDGSNAGTEVSEKKVDLFREKGLLILQTIYTGAVEALPSSFGLRKRLLEILE 283

Query: 339 ATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ 398
           AT+L  S++MH ++LSDM+RDF  +P+YWDWLARL+MTDS S    S  +   Q QKAIQ
Sbjct: 284 ATDLTHSEEMHKEMLSDMKRDFSREPEYWDWLARLEMTDSKSMSEMSVTLALPQFQKAIQ 343

Query: 399 VYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG 458
           VYEEAL+ +PS M+F+LY KFLMD IAPK  E   S++ S  E YISHLL VYEKA+ +G
Sbjct: 344 VYEEALQFLPSPMMFNLYIKFLMDAIAPKGGENDPSKVSSPTEDYISHLLVVYEKADVVG 403

Query: 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP 518
            +TED+A +YV+ YLQLG+ DEARKLA +LCSGKLSDS +LW+LR S+EI+  T ++ +P
Sbjct: 404 YMTEDLACQYVSFYLQLGRFDEARKLADRLCSGKLSDSEKLWILRASMEIKSFTDDTSAP 463

Query: 519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGE 578
           SK D   +  LL+  LTKVS  ++E LWLMAL  F  QK Y DKLVEI+LISVAKDGG +
Sbjct: 464 SKDDFQYVLGLLRSALTKVSISQAEDLWLMALNVFAKQKKYLDKLVEISLISVAKDGGSD 523

Query: 579 SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLV 638
            GFSL SAI+N ++QKDGI +AR+ YKRFLALP PGLVLY+ CIELE NLASVGDKD L 
Sbjct: 524 DGFSLSSAIVNFMLQKDGIHKARKTYKRFLALPHPGLVLYRCCIELEVNLASVGDKDCLA 583

Query: 639 NARKLFESALATYDQNTSLWRDYYSTETKVSFS 671
           NARKL+ESALATY Q+ +LW++Y+S E K+  S
Sbjct: 584 NARKLYESALATYGQDVTLWQNYHSMEIKLGTS 616

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480335|ref|XP_003610453.1| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula] gi|355511508|gb|AES92650.1| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula]

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/630 (63%), Positives = 508/630 (80%), Gaps = 10/630 (1%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MAD+VQY+LERM DE +DLE+RGLF + EI+EIVKQRRKFEYRLKRP PLK D++AYI+Y
Sbjct: 1   MADIVQYKLERMFDEFEDLEQRGLFNKREIAEIVKQRRKFEYRLKRPCPLKADFVAYIDY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E+QLDALRRLRKKS+ R+   +++ +K +KKS SDF+G+ RI++ Y LA+ R+KGDI+LW
Sbjct: 61  ETQLDALRRLRKKSVARE--LKKQGNKNLKKSKSDFAGLIRIIDTYELALKRYKGDIQLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR +KNGRMKK LA+++R HPKVPGVWIYAAAWEFD NLNV AARALMQ GLRV
Sbjct: 119 FRYLEFCRVQKNGRMKKALAKLVRLHPKVPGVWIYAAAWEFDRNLNVVAARALMQGGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LWVEYLRMELTY+NKLKARKVALGED+GTL RD R  +EK+W +ENK LFM LD
Sbjct: 179 CPTSEDLWVEYLRMELTYINKLKARKVALGEDEGTLTRDPRTVEEKQWRDENKELFMTLD 238

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
            E E  D +  E  ES+K+ +LF E G+ + +T+Y GA+EA+PSS NLR+RFFEI+E T 
Sbjct: 239 -EKEENDVANVEPDESKKNKELFAEHGMNLFRTVYGGAIEAVPSSLNLRKRFFEILEGTE 297

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           L+  +DM  ++L+DM+RDF  +P++WDWLAR +       +   E I+P Q+QKAIQVYE
Sbjct: 298 LSHYEDMCKEMLNDMKRDFSTEPEFWDWLARQECNVEAVHEINQEIIIP-QVQKAIQVYE 356

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461
           EALK+VPS  +F LY  FLM ++APK EE      P+    YISHLL++YE+AE+MG +T
Sbjct: 357 EALKSVPSGTMFSLYANFLMGIVAPKDEE------PNIDGPYISHLLSIYERAESMGIIT 410

Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
           +D+A ++V+L+LQL  LDEARKL AKLCSGKL++SVQLW LR+S+EI C+T++S  PS  
Sbjct: 411 DDLACKHVSLHLQLRHLDEARKLVAKLCSGKLAESVQLWELRVSIEITCITQSSLLPSDT 470

Query: 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF 581
           D+ S+FELL+ ILTK    +SE+LWL ALKF+ + + YFDKLVEI+++S+A+DGG ESGF
Sbjct: 471 DLSSLFELLRQILTKFHVSKSENLWLRALKFYASHRRYFDKLVEISVLSLARDGGSESGF 530

Query: 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNAR 641
           SL SAI++ ++QKDGI +AR++YKR+LALP PGL LY+ CIELE NLAS GDK+SLVNAR
Sbjct: 531 SLSSAIVSFILQKDGIHKARDIYKRYLALPHPGLALYRKCIELEANLASTGDKNSLVNAR 590

Query: 642 KLFESALATYDQNTSLWRDYYSTETKVSFS 671
           KL+ESALATYDQN   W+DYY  E K+  S
Sbjct: 591 KLYESALATYDQNVDFWQDYYRMEVKMGTS 620

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480337|ref|XP_003610454.1| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula] gi|355511509|gb|AES92651.1| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula]

 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/648 (61%), Positives = 508/648 (78%), Gaps = 28/648 (4%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MAD+VQY+LERM DE +DLE+RGLF + EI+EIVKQRRKFEYRLKRP PLK D++AYI+Y
Sbjct: 1   MADIVQYKLERMFDEFEDLEQRGLFNKREIAEIVKQRRKFEYRLKRPCPLKADFVAYIDY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E+QLDALRRLRKKS+ R+   +++ +K +KKS SDF+G+ RI++ Y LA+ R+KGDI+LW
Sbjct: 61  ETQLDALRRLRKKSVARE--LKKQGNKNLKKSKSDFAGLIRIIDTYELALKRYKGDIQLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR +KNGRMKK LA+++R HPKVPGVWIYAAAWEFD NLNV AARALMQ GLRV
Sbjct: 119 FRYLEFCRVQKNGRMKKALAKLVRLHPKVPGVWIYAAAWEFDRNLNVVAARALMQGGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LWVEYLRMELTY+NKLKARKVALGED+GTL RD R  +EK+W +ENK LFM LD
Sbjct: 179 CPTSEDLWVEYLRMELTYINKLKARKVALGEDEGTLTRDPRTVEEKQWRDENKELFMTLD 238

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
            E E  D +  E  ES+K+ +LF E G+ + +T+Y GA+EA+PSS NLR+RFFEI+E T 
Sbjct: 239 -EKEENDVANVEPDESKKNKELFAEHGMNLFRTVYGGAIEAVPSSLNLRKRFFEILEGTE 297

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           L+  +DM  ++L+DM+RDF  +P++WDWLAR +       +   E I+P Q+QKAIQVYE
Sbjct: 298 LSHYEDMCKEMLNDMKRDFSTEPEFWDWLARQECNVEAVHEINQEIIIP-QVQKAIQVYE 356

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461
           EALK+VPS  +F LY  FLM ++APK EE      P+    YISHLL++YE+AE+MG +T
Sbjct: 357 EALKSVPSGTMFSLYANFLMGIVAPKDEE------PNIDGPYISHLLSIYERAESMGIIT 410

Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
           +D+A ++V+L+LQL  LDEARKL AKLCSGKL++SVQLW LR+S+EI C+T++S  PS  
Sbjct: 411 DDLACKHVSLHLQLRHLDEARKLVAKLCSGKLAESVQLWELRVSIEITCITQSSLLPSDT 470

Query: 522 DILSIFELLKCILTKVSALESESLWL------------------MALKFFMNQKHYFDKL 563
           D+ S+FELL+ ILTK    +SE+LWL                   ALKF+ + + YFDKL
Sbjct: 471 DLSSLFELLRQILTKFHVSKSENLWLRVCCHHLSLIFVAMSCIKCALKFYASHRRYFDKL 530

Query: 564 VEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIE 623
           VEI+++S+A+DGG ESGFSL SAI++ ++QKDGI +AR++YKR+LALP PGL LY+ CIE
Sbjct: 531 VEISVLSLARDGGSESGFSLSSAIVSFILQKDGIHKARDIYKRYLALPHPGLALYRKCIE 590

Query: 624 LENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFS 671
           LE NLAS GDK+SLVNARKL+ESALATYDQN   W+DYY  E K+  S
Sbjct: 591 LEANLASTGDKNSLVNARKLYESALATYDQNVDFWQDYYRMEVKMGTS 638

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433970|ref|XP_004134769.1| PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Cucumis sativus]

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/630 (64%), Positives = 503/630 (79%), Gaps = 5/630 (0%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQ+RLE MVDELDD E+RGLF+R EI+EIVKQRRKFEYRLKRP PLKQDYL YI+Y
Sbjct: 1   MADVVQFRLEGMVDELDDFEKRGLFSRREIAEIVKQRRKFEYRLKRPCPLKQDYLTYIDY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E QL++LRRLRKK++ R+   +++  KKMKKS+SDF+GV RIL IYRLAV R+KGDI+LW
Sbjct: 61  EIQLESLRRLRKKAVARE--LKKQGDKKMKKSISDFAGVKRILYIYRLAVTRYKGDIDLW 118

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFCR RKNG MKKVLAQ+IRFHPKVPGVWIYAAAWEFDHN+NV AAR+LM +GLRV
Sbjct: 119 FRYLEFCRARKNGTMKKVLAQLIRFHPKVPGVWIYAAAWEFDHNINVDAARSLMLSGLRV 178

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           CPTSE+LW+EYLRMELTYLNKLKARKVALGED+G+LVR++  A EK+W  ENK LFM + 
Sbjct: 179 CPTSEDLWIEYLRMELTYLNKLKARKVALGEDEGSLVRENITAAEKQWREENKDLFMSMG 238

Query: 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN 341
               + D S  E + S+  +DLFRE+G  +L+TIYSGA+EALPSSF+LR+R  EI+EA +
Sbjct: 239 ETRGDNDESGVETL-SKDKLDLFREKGSNLLETIYSGAIEALPSSFSLRKRVLEILEAMD 297

Query: 342 LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401
           LA S++M  KIL D++RDF   P+YWDWLARL   +  +  GTS+    S+++KA++VYE
Sbjct: 298 LAHSEEMQSKILQDIKRDFASQPQYWDWLARL-YCNPENVQGTSDIKEISRIEKAVKVYE 356

Query: 402 EALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461
           E L+ VPSS IF LY +FL  +I P K E +   L SH ++  S LL VYEKA  +G +T
Sbjct: 357 EGLECVPSSAIFSLYVEFLRSIIVPVKGE-QTLGLSSHTDNITSRLLMVYEKALTLGHIT 415

Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
           +D+A +YV  YL+LG+LDEA+KLA +LCSGK S+SV+LW+LR+S EI+CV ++S SPSK 
Sbjct: 416 DDLACQYVLFYLELGRLDEAQKLAERLCSGKFSNSVKLWVLRVSTEIKCVLKDSPSPSKD 475

Query: 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF 581
           D+ SIFEL K +L K S  ES SLWL  LKFF NQ +YFDKLVEI+L ++AK GG E GF
Sbjct: 476 DLKSIFELTKEVLKKFSVSESGSLWLKVLKFFANQSYYFDKLVEISLYALAKSGGNEDGF 535

Query: 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNAR 641
           SL S I++ V+QKDGIQ+ RE+YK+FL LP PGL +YQ CI+LE+NLA+ GDKD L NAR
Sbjct: 536 SLSSVIVDFVLQKDGIQRTREVYKKFLGLPHPGLAMYQTCIQLESNLATAGDKDGLANAR 595

Query: 642 KLFESALATYDQNTSLWRDYYSTETKVSFS 671
           KLFESALATY QN  LW++YY+ E+K+  S
Sbjct: 596 KLFESALATYGQNVRLWQEYYTLESKIGSS 625

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799154|ref|XP_002867461.1| hypothetical protein ARALYDRAFT_913702 [Arabidopsis lyrata subsp. lyrata] gi|297313297|gb|EFH43720.1| hypothetical protein ARALYDRAFT_913702 [Arabidopsis lyrata subsp. lyrata]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/640 (61%), Positives = 501/640 (78%), Gaps = 20/640 (3%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQYRLERMVDELDDLERRG+FTR EI+EIVKQRRKFEYRLKRPSPLK+D++AYI+Y
Sbjct: 1   MADVVQYRLERMVDELDDLERRGIFTRAEIAEIVKQRRKFEYRLKRPSPLKEDFIAYIDY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E +LD LR+LR+K++  +        K+ KKSVSD++GVARI+EIYRLA MR+KGDI LW
Sbjct: 61  EVKLDELRQLRRKAVAYE------SKKRKKKSVSDYAGVARIVEIYRLATMRYKGDINLW 114

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFC+Q+++GRMKK LAQ IRFHPKV GVWIYAA+WEFD NLNVTAARALM NGLRV
Sbjct: 115 FRYLEFCKQKRHGRMKKALAQAIRFHPKVAGVWIYAASWEFDRNLNVTAARALMLNGLRV 174

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           C  SE+LWVEYLRMELTYLNKLKAR+VALGE KG+LVRD +  ++++W +ENK LFM LD
Sbjct: 175 CSNSEDLWVEYLRMELTYLNKLKARRVALGESKGSLVRDTKSVEDEKWKDENKELFMSLD 234

Query: 282 ---GEVENTDGSQPENMES----QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFF 334
              G  +  DG +  N+E      + VD+FRE+G  VLQTIYSGAVEALPSSF+LR+RF 
Sbjct: 235 EKEGNEKEEDGEEDSNVEDAEDVTEKVDVFREKGSNVLQTIYSGAVEALPSSFDLRKRFL 294

Query: 335 EIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ 394
           EI+EAT+LA SD++ + ILSD++RDF  +P+YW+WLAR +M+  +SK+ T  +    QMQ
Sbjct: 295 EILEATDLAHSDEIRNTILSDLKRDFCKEPEYWNWLARHEMSGYISKE-TGLEFSNLQMQ 353

Query: 395 KAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSEL-PSH--VEHYISHLLTVY 451
           KAIQV+EE L+ V SS +F +Y KFLM+ IA    +  D E+ PS   +  YISH++ VY
Sbjct: 354 KAIQVFEEGLQTVTSSSMFKIYIKFLMEAIAQSNGD--DDEISPSSNPIGDYISHIINVY 411

Query: 452 EKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511
           +KA+  GCLTE++A  YV+LYL+LGK  EA+KLA KLCSGK + S +LWL R+S+EIR +
Sbjct: 412 QKADETGCLTEELADEYVSLYLKLGKTHEAQKLAEKLCSGKFAGSAKLWLSRVSIEIRSL 471

Query: 512 TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISV 571
           + NS +PSKAD+ ++FELL   LTKV   ESESLWLMALKFF +Q+ Y DKLVE++++  
Sbjct: 472 SGNS-TPSKADLQTVFELLSNALTKVPISESESLWLMALKFFAHQRTYLDKLVEMSILLA 530

Query: 572 AKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASV 631
            K  G +  FSL S ++N V++  G   AR++YKRFLALP P LVLY++CIE+E NL SV
Sbjct: 531 TKSHGSDHVFSLSSTVVNFVLETKGGHSARKIYKRFLALPGPSLVLYKDCIEIETNLISV 590

Query: 632 GDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFS 671
           GDKD L NARKL++SA+A+Y Q+  LW++YY  ETK+  S
Sbjct: 591 GDKDGLSNARKLYDSAVASYSQDVELWKNYYLLETKMGTS 630

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234413|ref|NP_194549.1| uncharacterized protein [Arabidopsis thaliana] gi|7269674|emb|CAB79622.1| putative protein [Arabidopsis thaliana] gi|18252169|gb|AAL61917.1| putative protein [Arabidopsis thaliana] gi|30725462|gb|AAP37753.1| At4g28200 [Arabidopsis thaliana] gi|332660053|gb|AEE85453.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/636 (60%), Positives = 489/636 (76%), Gaps = 16/636 (2%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           MADVVQYRLERMVDELDDLERR +FTR EI+EIVKQRRKFEYRLKRPSPLK+D++AYI+Y
Sbjct: 1   MADVVQYRLERMVDELDDLERREIFTRAEIAEIVKQRRKFEYRLKRPSPLKEDFIAYIDY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E +LD LR+LR+KS+ R         K+ KKSVSDF+GVARI+EIYRLA MR+KGDI LW
Sbjct: 61  EVKLDELRQLRRKSVAR------VTKKRKKKSVSDFAGVARIVEIYRLATMRYKGDINLW 114

Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
           F+Y+EFC+Q+++GRMKK LAQ IRFHPKV GVWIYAA+WEFD NLNVTAARALM NGLRV
Sbjct: 115 FRYLEFCKQKRHGRMKKALAQAIRFHPKVAGVWIYAASWEFDRNLNVTAARALMLNGLRV 174

Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
           C  SE+LWVEYLRMELT+LNKLKARKVALGEDKG+LVRD +  ++++W +ENK LFM LD
Sbjct: 175 CSNSEDLWVEYLRMELTFLNKLKARKVALGEDKGSLVRDTKTVEDEQWKDENKELFMSLD 234

Query: 282 GEVENT-----DGSQPENMES-QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFE 335
            +  N      + S  E++E   + VD  +E+G  VLQTIYSGAVEA+PSSF+LR+RF E
Sbjct: 235 EKEGNEKEENDEDSIVEDVEDVTEKVDFLKEKGSNVLQTIYSGAVEAIPSSFDLRKRFLE 294

Query: 336 IVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQK 395
           I+EAT+LA SD+M + ILSD++RDF  +P+YW+WLAR +M+  +S +   E   P QMQK
Sbjct: 295 ILEATDLAHSDEMRNTILSDLKRDFCNEPEYWNWLARHEMSGCISNEAGLEFANP-QMQK 353

Query: 396 AIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455
           AIQV+EE L+ V SS +F++Y  FLM+ I     +  ++E+ S     ISH++ VY+KA+
Sbjct: 354 AIQVFEEGLQTVTSSSMFEIYINFLMEAIVQSNGD--ENEISSLSNPIISHIINVYQKAD 411

Query: 456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS 515
             GCLTE++A  YV+LYL+L K  EA+KLA KLCS K + S +LWL R+S+EIR ++ NS
Sbjct: 412 ETGCLTEELADEYVSLYLKLEKTHEAQKLAEKLCSEKFAGSAKLWLSRVSIEIRSLSENS 471

Query: 516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDG 575
            SPSKAD  ++FELL   L KV   ESESLWLMA  FF +Q+ Y DKLVE++++S  K  
Sbjct: 472 -SPSKADFQTVFELLSNALRKVPISESESLWLMAFNFFAHQRTYLDKLVEMSILSATKSH 530

Query: 576 GGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKD 635
           G +  FSL S ++  V++  G   AR++YKRFLALP P LVLY+ CIE+E NL SVGDKD
Sbjct: 531 GSDHVFSLASTVVKFVLETKGAHSARKIYKRFLALPGPSLVLYKGCIEIETNLISVGDKD 590

Query: 636 SLVNARKLFESALATYDQNTSLWRDYYSTETKVSFS 671
            L NARKL++SA+A+Y Q+  LW++YYS ETK+  S
Sbjct: 591 GLSNARKLYDSAVASYGQDVELWKNYYSLETKLGTS 626

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	676
TAIR|locus:2123678	648	AT4G28200 "AT4G28200" [Arabido	0.917	0.956	0.597	4.2e-198
MGI|MGI:2445193	597	Utp6 "UTP6, small subunit (SSU	0.289	0.328	0.318	1.9e-36
UNIPROTKB|F1NLG7	599	UTP6 "Uncharacterized protein"	0.304	0.343	0.331	2e-36
UNIPROTKB|E1BYV8	597	UTP6 "Uncharacterized protein"	0.304	0.345	0.331	4.4e-36
UNIPROTKB|F1RJ62	598	UTP6 "Uncharacterized protein"	0.289	0.327	0.333	8.8e-35
UNIPROTKB|A5PJN6	598	UTP6 "Uncharacterized protein"	0.289	0.327	0.352	2.6e-34
UNIPROTKB|E2RMS8	598	UTP6 "Uncharacterized protein"	0.289	0.327	0.333	8.6e-34
UNIPROTKB|Q9NYH9	597	UTP6 "U3 small nucleolar RNA-a	0.316	0.358	0.312	7.8e-33
ZFIN|ZDB-GENE-040426-769	594	utp6 "UTP6, small subunit (SSU	0.300	0.341	0.308	4.4e-32
CGD|CAL0000714	431	orf19.2330 [Candida albicans (	0.332	0.522	0.338	7.2e-31

TAIR|locus:2123678 AT4G28200 "AT4G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 1918 (680.2 bits), Expect = 4.2e-198, P = 4.2e-198
 Identities = 380/636 (59%), Positives = 484/636 (76%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MADVVQYRLERMVDELDDLERR +FTR EI+EIVKQRRKFEYRLKRPSPLK+D++AYI+Y
Sbjct:     1 MADVVQYRLERMVDELDDLERREIFTRAEIAEIVKQRRKFEYRLKRPSPLKEDFIAYIDY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E +LD LR+LR+KS+ R   + ++             GVARI+EIYRLA MR+KGDI LW
Sbjct:    61 EVKLDELRQLRRKSVARVTKKRKK------KSVSDFAGVARIVEIYRLATMRYKGDINLW 114

Query:   162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
             F+Y+EFC+Q+++GRMKK LAQ IRFHPKV GVWIYAA+WEFD NLNVTAARALM NGLRV
Sbjct:   115 FRYLEFCKQKRHGRMKKALAQAIRFHPKVAGVWIYAASWEFDRNLNVTAARALMLNGLRV 174

Query:   222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
             C  SE+LWVEYLRMELT+LNKLKARKVALGEDKG+LVRD +  ++++W +ENK LFM LD
Sbjct:   175 CSNSEDLWVEYLRMELTFLNKLKARKVALGEDKGSLVRDTKTVEDEQWKDENKELFMSLD 234

Query:   282 ---G--EVENTDGSQPENMES-QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFE 335
                G  + EN + S  E++E   + VD  +E+G  VLQTIYSGAVEA+PSSF+LR+RF E
Sbjct:   235 EKEGNEKEENDEDSIVEDVEDVTEKVDFLKEKGSNVLQTIYSGAVEAIPSSFDLRKRFLE 294

Query:   336 IVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQK 395
             I+EAT+LA SD+M + ILSD++RDF  +P+YW+WLAR +M+  +S +   E   P QMQK
Sbjct:   295 ILEATDLAHSDEMRNTILSDLKRDFCNEPEYWNWLARHEMSGCISNEAGLEFANP-QMQK 353

Query:   396 AIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455
             AIQV+EE L+ V SS +F++Y  FLM+ I     +  ++E+ S     ISH++ VY+KA+
Sbjct:   354 AIQVFEEGLQTVTSSSMFEIYINFLMEAIVQSNGD--ENEISSLSNPIISHIINVYQKAD 411

Query:   456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS 515
               GCLTE++A  YV+LYL+L K  EA+KLA KLCS K + S +LWL R+S+EIR ++ NS
Sbjct:   412 ETGCLTEELADEYVSLYLKLEKTHEAQKLAEKLCSEKFAGSAKLWLSRVSIEIRSLSENS 471

Query:   516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDG 575
              SPSKAD  ++FELL   L KV   ESESLWLMA  FF +Q+ Y DKLVE++++S  K  
Sbjct:   472 -SPSKADFQTVFELLSNALRKVPISESESLWLMAFNFFAHQRTYLDKLVEMSILSATKSH 530

Query:   576 GGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKD 635
             G +  FSL S ++  V++  G   AR++YKRFLALP P LVLY+ CIE+E NL SVGDKD
Sbjct:   531 GSDHVFSLASTVVKFVLETKGAHSARKIYKRFLALPGPSLVLYKGCIEIETNLISVGDKD 590

Query:   636 SLVNARKLFESALATYDQNTSLWRDYYSTETKVSFS 671
              L NARKL++SA+A+Y Q+  LW++YYS ETK+  S
Sbjct:   591 GLSNARKLYDSAVASYGQDVELWKNYYSLETKLGTS 626

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0000741 "karyogamy" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

MGI|MGI:2445193 Utp6 "UTP6, small subunit (SSU) processome component, homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
 Identities = 66/207 (31%), Positives = 110/207 (53%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EY++ R + LK+D++ Y++Y
Sbjct:     1 MAEIIQERIEDRIPELEQLERIGLFSHAEIKAIIKKASDLEYKIHRRTLLKEDFINYVQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L  +++        R  R+             V R+  ++  A  ++K D++LW
Sbjct:    61 EINL--LELIQR--------RRARIKYSFKKDEIEYSMVHRVQGVFGRASAKWKDDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               Y+ FC++      + K+ + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSYIVFCKKWGTKTHLSKIFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARK 247
               P   +L+ EY RMEL +  KL+  K
Sbjct:   171 FHPECPKLYQEYFRMELMHAEKLRKEK 197

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|F1NLG7 UTP6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
 Identities = 72/217 (33%), Positives = 113/217 (52%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+ V+ RLE  V EL+ LER GLFT  EI  ++K+    EY+++R +  K+D++ YI+Y
Sbjct:     1 MAERVEQRLEDRVPELEQLERVGLFTHEEIRAVLKKATALEYKIQRRALRKEDFINYIQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L + R+   G    +E                + R+  +++ A  ++K D++LW
Sbjct:    61 EINLLELIKKRRARTGYSFKKEEIESSI----------MHRVHSLFKRATGKWKEDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               ++ FC+Q     ++ KV + ++  HP  P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSHVAFCKQWNAKHQLSKVFSTMLAIHPNKPALWIMAAKWEMETRLSSESARHLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTL 257
               P   +L+ EY RMEL    K +  K  L   K  L
Sbjct:   171 FHPECPKLYQEYFRMELMNAEKQRKEKKELERAKMNL 207

GO:0006396 "RNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|E1BYV8 UTP6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
 Identities = 72/217 (33%), Positives = 113/217 (52%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+ V+ RLE  V EL+ LER GLFT  EI  ++K+    EY+++R +  K+D++ YI+Y
Sbjct:     1 MAERVEQRLEDRVPELEQLERVGLFTHEEIRAVLKKATALEYKIQRRALRKEDFINYIQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L + R+   G    +E                + R+  +++ A  ++K D++LW
Sbjct:    61 EINLLELIKKRRARTGYSFKKEEIESSI----------MHRVHSLFKRATGKWKEDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               ++ FC+Q     ++ KV + ++  HP  P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSHVAFCKQWNAKHQLSKVFSTMLAIHPNKPALWIMAAKWEMETRLSSESARHLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTL 257
               P   +L+ EY RMEL    K +  K  L   K  L
Sbjct:   171 FHPECPKLYQEYFRMELMNAEKQRKEKKELERAKMNL 207

GO:0005622 "intracellular" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|F1RJ62 UTP6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 322 (118.4 bits), Expect = 8.8e-35, Sum P(2) = 8.8e-35
 Identities = 69/207 (33%), Positives = 114/207 (55%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+++Q R+E  + EL+ LER GLF+R EI  I+K+    EY+++R +  K+D++ Y++Y
Sbjct:     1 MAEIIQERIEDRLPELEQLERIGLFSRAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L + R+  IG    ++                V R+  ++R A  ++K D++LW
Sbjct:    61 EINLLELIQRRRARIGYSFKKDEIENSI----------VHRVQGVFRRASAKWKDDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               Y+ FC++     ++ KV + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSYVVFCKKWATKAQLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARK 247
               P   +L+ EY RMEL +  KL+  K
Sbjct:   171 FHPECPKLYQEYFRMELMHAEKLRKEK 197

GO:0005730 "nucleolus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|A5PJN6 UTP6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
 Identities = 73/207 (35%), Positives = 112/207 (54%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+V+Q R+E  + EL  LER GLF+  EI  I+++  + EYR++R S LK D++ Y++Y
Sbjct:     1 MAEVIQERVEDRLPELQQLERTGLFSHAEIKAIIRKALELEYRIQRRSLLKDDFIRYVQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L  + K        R  RV             + RI  ++R A +++K D+ LW
Sbjct:    61 EIHL--LDLIEK--------RRARVGYTFKKDEIEDPIIHRIQSVFRRASIKWKDDVRLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               ++ FCR+   N  + K+ + ++ FH   PG+WI AA WE +   +  +AR L    LR
Sbjct:   111 LSFIAFCRKWASNVHLSKIFSSLLAFHSNKPGLWILAAKWELEDRFSSESARQLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARK 247
               P   +L+ EY RMEL +  KL+  K
Sbjct:   171 FHPRCPKLYEEYFRMELMHAEKLRKEK 197

GO:0005730 "nucleolus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|E2RMS8 UTP6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 318 (117.0 bits), Expect = 8.6e-34, Sum P(2) = 8.6e-34
 Identities = 69/207 (33%), Positives = 113/207 (54%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EYR++R +  K+D++ Y++Y
Sbjct:     1 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYRIQRRALFKEDFINYVQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L + R+  IG    ++                V R+  ++R A  ++K D++LW
Sbjct:    61 EINLLELIQRRRTRIGYSFKKDEIENSI----------VHRVQGVFRRASAKWKDDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               Y+ FC++     ++ KV + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSYVVFCKKWATKPQLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARK 247
               P   +L+ EY RMEL +  KL+  K
Sbjct:   171 FHPECPKLYQEYFRMELMHAEKLRKEK 197

GO:0005730 "nucleolus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|Q9NYH9 UTP6 "U3 small nucleolar RNA-associated protein 6 homolog" [Homo sapiens (taxid:9606)]

 Score = 317 (116.6 bits), Expect = 7.8e-33, Sum P(2) = 7.8e-33
 Identities = 71/227 (31%), Positives = 122/227 (53%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EY+++R +  K+D++ Y++Y
Sbjct:     1 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E  L  L + R+  IG    ++                V R+  +++ A  ++K D++LW
Sbjct:    61 EINLLELIQRRRTRIGYSFKKDEIENSI----------VHRVQGVFQRASAKWKDDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               Y+ FC++     R+ KV + ++  H   P +WI AA WE +  L+  +AR L    LR
Sbjct:   111 LSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEK 267
               P   +L+ EY RMEL +  KL+  K     +K ++  ++ D  E+
Sbjct:   171 FHPECPKLYKEYFRMELMHAEKLRKEKEEF--EKASMDVENPDYSEE 215

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-040426-769 utp6 "UTP6, small subunit (SSU) processome component, homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 285 (105.4 bits), Expect = 4.4e-32, Sum P(2) = 4.4e-32
 Identities = 66/214 (30%), Positives = 113/214 (52%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MAD+VQ RLE  +  L+ LER GLFT  E+  ++K+    EY+L R    K D++AYI++
Sbjct:     1 MADIVQQRLEDRIPGLEQLERVGLFTNKEVKSMLKRSTALEYKLHRAIQCKDDFIAYIQF 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E     L + R+  IG    RE                +  I  ++R A  +++ D++LW
Sbjct:    61 EINTLGLIKKRRARIGYHFKREEIEYPI----------IQGINSVFRRATSKWQEDVQLW 110

Query:   162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
               ++ F ++     ++ K+L  ++  HP  P +WI AA  E +   +  +AR L    LR
Sbjct:   111 LSHVAFNKKWGSKTQLSKILLSMLAIHPDKPALWIMAAKCEMEDRNSSESARHLFLRALR 170

Query:   221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDK 254
               P ++++++EY RMEL +  K++ ++  L + K
Sbjct:   171 FHPENKKVYLEYFRMELMHAEKMRKQQQELEQAK 204

GO:0005622 "intracellular" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

CGD|CAL0000714 orf19.2330 [Candida albicans (taxid:5476)]

 Score = 347 (127.2 bits), Expect = 7.2e-31, P = 7.2e-31
 Identities = 80/236 (33%), Positives = 133/236 (56%)

Query:    42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
             MA+ ++Y LE+ V EL+DL+ +GLF ++EI+ ++++R  FE+R+       +D+L Y E+
Sbjct:     1 MAEKIRYYLEQSVPELEDLKIKGLFDKNEITMVMRRRTDFEHRITGRGCKPKDFLRYTEF 60

Query:   102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
             E+ L+ LR+ R   + +    E +             G  RI+ I+  A  R+ G+ ELW
Sbjct:    61 ETNLEKLRKKRYNRLSKVGMIETKPSISDWA------GTRRIMFIFDRATRRYPGETELW 114

Query:   162 FKYMEFCRQRKNGRMK---KVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218
              +Y++F +   NG +K   KV +++++  P+    W+ AA +EF+ N N   AR L Q G
Sbjct:   115 SQYLKFAKS--NGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFETNGNAKGARVLFQRG 172

Query:   219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENK 274
             LR+   S ELW+ Y + ELTY++KL AR+  LG       R+  + +E +   E K
Sbjct:   173 LRLNSESLELWLNYAQFELTYISKLLARRKVLGLITEKQQREAMETEEAKLEQEIK 228

GO:0034388 "Pwp2p-containing subcomplex of 90S preribosome" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	676
COG5191	435	COG5191, COG5191, Uncharacterized conserved protei	4e-46
pfam08640	83	pfam08640, U3_assoc_6, U3 small nucleolar RNA-asso	5e-28

>gnl|CDD|227518 COG5191, COG5191, Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

 Score =  169 bits (429), Expect = 4e-46
 Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 11/207 (5%)

Query: 42  MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
           M + +QY +E+M+ EL+DL+ +G+F+  E+  IVK RRKFE RL+R      D++ YI+Y
Sbjct: 1   MVEKIQYYMEQMIPELEDLKEKGIFSPDELRRIVKTRRKFELRLQRREKKLNDFMRYIKY 60

Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
           E  L+ LR  R K          R     K S SD S   + +     +  +F  D ++W
Sbjct: 61  ECNLEKLRAKRVK----------RKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIW 110

Query: 162 FKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
            +Y  +  ++K  G MK + A+ +  HP    +WIY  A+E     N+ ++RA+   GLR
Sbjct: 111 SQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR 170

Query: 221 VCPTSEELWVEYLRMELTYLNKLKARK 247
           +   S  +W+EY RMEL Y+ KL  R+
Sbjct: 171 MNSRSPRIWIEYFRMELMYITKLINRR 197

Length = 435

>gnl|CDD|192109 pfam08640, U3_assoc_6, U3 small nucleolar RNA-associated protein 6

 Score =  107 bits (269), Expect = 5e-28
 Identities = 45/94 (47%), Positives = 57/94 (60%), Gaps = 11/94 (11%)

Query: 50  LERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALR 109
           LE+ V EL+DLER+GLFT+ EI  IVK+R  FEYRL+R      D+L YI+YE  L+ LR
Sbjct: 1   LEQSVPELEDLERKGLFTKDEIRSIVKKRTDFEYRLQRRGSSLSDFLRYIQYELNLEKLR 60

Query: 110 RLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARI 143
           R R+K IG             K S+ D+S   RI
Sbjct: 61  RKRRKRIGYK-----------KNSIIDYSIQHRI 83

This is a family of U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA. Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	676
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	100.0
KOG1915	677	consensus Cell cycle control protein (crooked neck	100.0
KOG1915	677	consensus Cell cycle control protein (crooked neck	100.0
KOG2047	835	consensus mRNA splicing factor [RNA processing and	100.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	100.0
COG5191	435	Uncharacterized conserved protein, contains HAT (H	100.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	100.0
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.95
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.93
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.89
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.88
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.87
PF08640	83	U3_assoc_6: U3 small nucleolar RNA-associated prot	99.85
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.8
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.79
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.78
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.77
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.77
KOG1258	577	consensus mRNA processing protein [RNA processing	99.76
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.73
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.73
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.72
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.72
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.71
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.71
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	99.7
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.66
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.61
KOG1258	577	consensus mRNA processing protein [RNA processing	99.58
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	99.55
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.52
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.5
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.49
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.42
PLN03218	1060	maturation of RBCL 1; Provisional	99.39
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.39
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.37
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.36
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.35
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.35
PLN03218	1060	maturation of RBCL 1; Provisional	99.32
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.32
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.3
PRK14574	822	hmsH outer membrane protein; Provisional	99.3
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	99.26
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	99.25
PLN03077	857	Protein ECB2; Provisional	99.24
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.21
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.2
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.17
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	99.16
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.16
PRK14574	822	hmsH outer membrane protein; Provisional	99.13
PRK12370	553	invasion protein regulator; Provisional	99.08
KOG2076	895	consensus RNA polymerase III transcription factor	99.07
KOG1126	638	consensus DNA-binding cell division cycle control	99.06
PRK12370	553	invasion protein regulator; Provisional	99.06
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.05
PLN03077	857	Protein ECB2; Provisional	99.04
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.01
PRK11189	296	lipoprotein NlpI; Provisional	98.98
KOG2076	895	consensus RNA polymerase III transcription factor	98.98
KOG1126	638	consensus DNA-binding cell division cycle control	98.97
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.93
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.92
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.87
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.86
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.85
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.81
PRK11189	296	lipoprotein NlpI; Provisional	98.75
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.75
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.69
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.66
KOG1125	579	consensus TPR repeat-containing protein [General f	98.64
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.54
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.54
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.54
PLN02789	320	farnesyltranstransferase	98.52
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.48
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.48
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.47
PRK15359	144	type III secretion system chaperone protein SscB;	98.44
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.44
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.43
KOG1125	579	consensus TPR repeat-containing protein [General f	98.42
PLN02789	320	farnesyltranstransferase	98.41
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.36
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.36
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.34
KOG2003	840	consensus TPR repeat-containing protein [General f	98.32
PRK15359	144	type III secretion system chaperone protein SscB;	98.31
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.3
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.27
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.24
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.22
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	98.21
KOG1129	478	consensus TPR repeat-containing protein [General f	98.21
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.17
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.16
KOG1129	478	consensus TPR repeat-containing protein [General f	98.15
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.14
KOG2003	840	consensus TPR repeat-containing protein [General f	98.14
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.13
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.12
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.12
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.11
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.07
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.01
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.97
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.93
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.89
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	97.88
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.82
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.75
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.71
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.7
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.69
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.65
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.65
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.6
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	97.6
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.55
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.53
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.48
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.45
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.45
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	97.44
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.44
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	97.42
PF13428	44	TPR_14: Tetratricopeptide repeat	97.42
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.39
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	97.37
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.36
KOG0553	304	consensus TPR repeat-containing protein [General f	97.35
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.34
PF13428	44	TPR_14: Tetratricopeptide repeat	97.32
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.28
PRK11906	458	transcriptional regulator; Provisional	97.26
PF13371	73	TPR_9: Tetratricopeptide repeat	97.25
KOG0553	304	consensus TPR repeat-containing protein [General f	97.23
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.22
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.16
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.15
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.14
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.14
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.13
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.13
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.1
PF13371	73	TPR_9: Tetratricopeptide repeat	97.06
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.06
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.97
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.97
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.85
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.83
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.81
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.55
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.4
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	96.37
PRK10803	263	tol-pal system protein YbgF; Provisional	96.31
PRK10803	263	tol-pal system protein YbgF; Provisional	96.28
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.27
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.26
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.26
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.15
PF13431	34	TPR_17: Tetratricopeptide repeat	96.11
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.0
PF12688	120	TPR_5: Tetratrico peptide repeat	95.99
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.94
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.8
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.76
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.66
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.48
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.46
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.35
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.34
PF13431	34	TPR_17: Tetratricopeptide repeat	95.31
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.24
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.15
PRK11906	458	transcriptional regulator; Provisional	95.09
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	94.88
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.85
PF12688	120	TPR_5: Tetratrico peptide repeat	94.66
KOG3785	557	consensus Uncharacterized conserved protein [Funct	94.62
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.56
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	94.43
PRK15331	165	chaperone protein SicA; Provisional	94.04
PF13512	142	TPR_18: Tetratricopeptide repeat	94.0
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	93.94
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	93.87
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.81
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.59
PF13512	142	TPR_18: Tetratricopeptide repeat	93.56
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.53
PRK15331	165	chaperone protein SicA; Provisional	93.53
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.49
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.28
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.96
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.95
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.92
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	91.64
KOG4234	271	consensus TPR repeat-containing protein [General f	91.48
COG4105	254	ComL DNA uptake lipoprotein [General function pred	91.44
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	91.37
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	90.92
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.87
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.64
COG4700	251	Uncharacterized protein conserved in bacteria cont	90.37
PRK04841	903	transcriptional regulator MalT; Provisional	90.3
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	89.95
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.59
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.55
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	89.18
PF03704	146	BTAD: Bacterial transcriptional activator domain;	88.95
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	88.45
KOG4234	271	consensus TPR repeat-containing protein [General f	88.26
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	87.48
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	87.46
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.0
PF03704	146	BTAD: Bacterial transcriptional activator domain;	86.84
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	85.15
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	83.97
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	82.34
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	82.26
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	82.01
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	80.31
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	80.27

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.5e-70  Score=550.55  Aligned_cols=541  Identities=35%  Similarity=0.595  Sum_probs=431.3

Q ss_pred             hHHHHHHHHHhhhHhHHHHHHcCCCCHHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 005817           42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEG  121 (676)
Q Consensus        42 ma~~v~~~~e~~~~e~~~~~~~~~~~~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~  121 (676)
                      |||+||.++|+||||++||+++||||++||+.|+++|+.||++|+|+...+.||++||+||.++++||.+|+|.      
T Consensus         1 Mae~iqy~~Er~lpElEdl~~~giFt~dEi~~Ivk~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk------   74 (568)
T KOG2396|consen    1 MAEKIQYRMERMLPELEDLKRKGIFTRDEIREIVKKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKK------   74 (568)
T ss_pred             CchHHHHHHHHhchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999753      


Q ss_pred             hhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817          122 RERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW  200 (676)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~  200 (676)
                            ++.+.+.+|.++++||..+|++|+.+|++|+++|..|+.||++.+ +.++.++|..+|+.||++|++|+.+|.|
T Consensus        75 ------~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w  148 (568)
T KOG2396|consen   75 ------KRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW  148 (568)
T ss_pred             ------hhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh
Confidence                  234778899999999999999999999999999999999999988 6899999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCC
Q 005817          201 EFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL  280 (676)
Q Consensus       201 e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (676)
                      +++.+.|++.||.+|.||||+||+++.||.+|++||+.+++++.+|+.++|.+....       ++.             
T Consensus       149 efe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~-------~~e-------------  208 (568)
T KOG2396|consen  149 EFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDK-------DEE-------------  208 (568)
T ss_pred             HHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchh-------HHH-------------
Confidence            999998999999999999999999999999999999999999999999888643210       000             


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcC
Q 005817          281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF  360 (676)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~  360 (676)
                                      +         ...+.+-.++...+..+.... .-.. .+....++.  ..+..+.+++.+...+
T Consensus       209 ----------------i---------e~ge~~~~~~~~s~~~~~~~~-k~~e-~~~~~~~d~--~kel~k~i~d~~~~~~  259 (568)
T KOG2396|consen  209 ----------------I---------ERGELAWINYANSVDIIKGAV-KSVE-LSVAEKFDF--LKELQKNIIDDLQSKA  259 (568)
T ss_pred             ----------------H---------HHHHHHHHhhccchhhhhcch-hhcc-hHHHHHHHH--HHHHHHHHHHHHhccC
Confidence                            0         011222222222222111000 0000 011112221  3467888999999999


Q ss_pred             CCChhhHHHHHHHhccccCCC------CCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCC
Q 005817          361 LVDPKYWDWLARLKMTDSVSK------DGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDS  434 (676)
Q Consensus       361 p~~~~~w~~la~~~~~~~~~~------~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~  434 (676)
                      |++|.+|..+|+.++..-..+      ...+....-..-+.+.++|+++++.+++..||..|++++.+.+...       
T Consensus       260 ~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~-------  332 (568)
T KOG2396|consen  260 PDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFL-------  332 (568)
T ss_pred             CCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh-------
Confidence            999999999999987532111      1111122223456789999999999999999999999999865310       


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcccc
Q 005817          435 ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRN  514 (676)
Q Consensus       435 ~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~  514 (676)
                           ....+.....+++.+.......+...-.|+.+.+......+|+.+..+++...+.++..+|..+++...+...  
T Consensus       333 -----r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~s--  405 (568)
T KOG2396|consen  333 -----RGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKS--  405 (568)
T ss_pred             -----hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcc--
Confidence                 1135788899999999998888888888988888777778888888888867888999999999998875432  


Q ss_pred             CCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHH--HHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHH
Q 005817          515 SFSPSKADILSIFELLKCILTKVSALESESLWLMAL--KFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVI  592 (676)
Q Consensus       515 ~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~  592 (676)
                             |.+-..+.....++..+.......|.+..  +.+..  .....++..+.....++     ...+...|++|.+
T Consensus       406 -------D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~--~~~~~Ii~a~~s~~~~~-----~~tl~s~~l~~~~  471 (568)
T KOG2396|consen  406 -------DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQE--DTLDLIISALLSVIGAD-----SVTLKSKYLDWAY  471 (568)
T ss_pred             -------hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhH--HHHHHHHHHHHHhcCCc-----eeehhHHHHHHHH
Confidence                   34544444445566666666777888765  11111  12222333333223333     3577888999999


Q ss_pred             HhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcc
Q 005817          593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSL  672 (676)
Q Consensus       593 ~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~  672 (676)
                      +.|+..+||++|.+...+||.+..++.++|++|..+.++    ++..+|.+|++|+..||+++++|.+|..||..+|.++
T Consensus       472 e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc----~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~e  547 (568)
T KOG2396|consen  472 ESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESC----NLANIREYYDRALREFGADSDLWMDYMKEELPLGRPE  547 (568)
T ss_pred             HhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhc----CchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcc
Confidence            999999999999999999999999999999999998877    7999999999999999999999999999999999999


Q ss_pred             cCC
Q 005817          673 LCF  675 (676)
Q Consensus       673 ~~~  675 (676)
                      .|.
T Consensus       548 n~~  550 (568)
T KOG2396|consen  548 NCG  550 (568)
T ss_pred             ccc
Confidence            984

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.5e-57  Score=447.77  Aligned_cols=490  Identities=19%  Similarity=0.300  Sum_probs=402.7

Q ss_pred             chHHHHHHHHHhhhHhHHHHH-------HcCCCCHHHHHHH-HHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHH
Q 005817           41 AMADVVQYRLERMVDELDDLE-------RRGLFTRHEISEI-VKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLR  112 (676)
Q Consensus        41 ~ma~~v~~~~e~~~~e~~~~~-------~~~~~~~~ei~~i-~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R  112 (676)
                      +-+..||++.||+|+|..+-+       ..+|.+.+|+++. .++|+.||..|.++..+...|++|++||.++..     
T Consensus        14 ktpa~vqItAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e-----   88 (677)
T KOG1915|consen   14 KTPAPVQITAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKE-----   88 (677)
T ss_pred             CCCCcceecHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----
Confidence            567789999999999998765       3456678999998 999999999999999999999999999988642     


Q ss_pred             HhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-chHHHHHHHHHHhCCCCH
Q 005817          113 KKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVP  191 (676)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~P~~~  191 (676)
                                                 ..||++||+|||.....++.||++|++++++.+. .+|+++++||+...|+..
T Consensus        89 ---------------------------~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd  141 (677)
T KOG1915|consen   89 ---------------------------IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD  141 (677)
T ss_pred             ---------------------------HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH
Confidence                                       5788899999999999999999999999999874 789999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhh
Q 005817          192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWIN  271 (676)
Q Consensus       192 ~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~  271 (676)
                      ++|.+|..++ +..||++.||++|+|++.+.|+ .+.|..|++||+.+.                               
T Consensus       142 qlWyKY~ymE-E~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRyk-------------------------------  188 (677)
T KOG1915|consen  142 QLWYKYIYME-EMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYK-------------------------------  188 (677)
T ss_pred             HHHHHHHHHH-HHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhh-------------------------------
Confidence            9999999999 6899999999999999999998 799999999999873                               


Q ss_pred             hccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccc-CcHHHHH
Q 005817          272 ENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLA-QSDDMHD  350 (676)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~-~~~~~a~  350 (676)
                                                          ..+.|+.||++-+-.+|+. .-|..+    ++|+.. +....+.
T Consensus       189 ------------------------------------eieraR~IYerfV~~HP~v-~~wiky----arFE~k~g~~~~aR  227 (677)
T KOG1915|consen  189 ------------------------------------EIERARSIYERFVLVHPKV-SNWIKY----ARFEEKHGNVALAR  227 (677)
T ss_pred             ------------------------------------HHHHHHHHHHHHheecccH-HHHHHH----HHHHHhcCcHHHHH
Confidence                                                3456788888888888764 556554    456532 3567788


Q ss_pred             HHHHHHHhcCCCChh---hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHh
Q 005817          351 KILSDMQRDFLVDPK---YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMI  424 (676)
Q Consensus       351 ~il~~~~~~~p~~~~---~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~  424 (676)
                      .+|+.++..+.++..   +....|..+..             ++.+++|+.+|+-||...|...   ++..|..|+.+..
T Consensus       228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~-------------qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG  294 (677)
T KOG1915|consen  228 SVYERAIEFLGDDEEAEILFVAFAEFEER-------------QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG  294 (677)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence            888888888777633   34455555532             6789999999999999999763   9999999998864


Q ss_pred             cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC--hHHHHHH
Q 005817          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD--SVQLWLL  502 (676)
Q Consensus       425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~--~~~lW~~  502 (676)
                      ...    +|+      ...+.+.+--|+.-+..+|.+.+.|+.|+.++...|+.+..+.+|++|+ .+.|.  ....|..
T Consensus       295 d~~----gIE------d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI-anvpp~~ekr~W~R  363 (677)
T KOG1915|consen  295 DKE----GIE------DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI-ANVPPASEKRYWRR  363 (677)
T ss_pred             chh----hhH------HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH-ccCCchhHHHHHHH
Confidence            221    111      1235677788999999999999999999999999999999999999999 77776  2467777


Q ss_pred             HHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCC
Q 005817          503 RISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE--SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESG  580 (676)
Q Consensus       503 ~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~--~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  580 (676)
                      ||.++++..-....  .-.|+++.+++|+.+|..+|+++  ..++|.+|+++..+..+     +..|.+++...+|.|++
T Consensus       364 YIYLWinYalyeEl--e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~-----l~~ARkiLG~AIG~cPK  436 (677)
T KOG1915|consen  364 YIYLWINYALYEEL--EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLN-----LTGARKILGNAIGKCPK  436 (677)
T ss_pred             HHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcc-----cHHHHHHHHHHhccCCc
Confidence            77766654210000  01268999999999999999875  56899999986544432     12233334445566667


Q ss_pred             cchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC-CCc-hHH
Q 005817          581 FSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNT-SLW  658 (676)
Q Consensus       581 ~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~-~~~-~lW  658 (676)
                      ..++..|++++.++++++++|++|++.|...|.+...|.+|+.||..+|      +.++||.+|+-|++... +.| -+|
T Consensus       437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg------dtdRaRaifelAi~qp~ldmpellw  510 (677)
T KOG1915|consen  437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG------DTDRARAIFELAISQPALDMPELLW  510 (677)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHhcCcccccHHHHH
Confidence            7899999999999999999999999999999999999999999999999      89999999999999865 444 899


Q ss_pred             HHHHHHHhhcCCccc
Q 005817          659 RDYYSTETKVSFSLL  673 (676)
Q Consensus       659 ~~y~~fE~~~G~~~~  673 (676)
                      ..||+||...|..+.
T Consensus       511 kaYIdFEi~~~E~ek  525 (677)
T KOG1915|consen  511 KAYIDFEIEEGEFEK  525 (677)
T ss_pred             HHhhhhhhhcchHHH
Confidence            999999999887654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-45  Score=367.99  Aligned_cols=496  Identities=18%  Similarity=0.229  Sum_probs=389.0

Q ss_pred             HHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHH
Q 005817           68 RHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIY  147 (676)
Q Consensus        68 ~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  147 (676)
                      +++.++|.++|+.||++|..+..+++.|++||++|+..                                ..+++|++++
T Consensus        83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn--------------------------------k~vNhARNv~  130 (677)
T KOG1915|consen   83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN--------------------------------KQVNHARNVW  130 (677)
T ss_pred             HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh--------------------------------hhHhHHHHHH
Confidence            47788999999999999999999999999999999853                                1478899999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHccC-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH
Q 005817          148 RLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE  226 (676)
Q Consensus       148 eral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~  226 (676)
                      +||+...|.-.++|.+|+-++...|+ ..++++|+|.+...|. .+.|..|++|++ ..++++.||.+|+|-+-.||+ .
T Consensus       131 dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fEl-RykeieraR~IYerfV~~HP~-v  207 (677)
T KOG1915|consen  131 DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFEL-RYKEIERARSIYERFVLVHPK-V  207 (677)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHH-HhhHHHHHHHHHHHHheeccc-H
Confidence            99999999999999999999988885 6899999999999996 799999999998 566999999999999999997 6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHH-
Q 005817          227 ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFR-  305 (676)
Q Consensus       227 ~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  305 (676)
                      +-|+.|++||..+++...+|.++.. +.+.+..+    .      ....                     +...-+.|. 
T Consensus       208 ~~wikyarFE~k~g~~~~aR~Vyer-Aie~~~~d----~------~~e~---------------------lfvaFA~fEe  255 (677)
T KOG1915|consen  208 SNWIKYARFEEKHGNVALARSVYER-AIEFLGDD----E------EAEI---------------------LFVAFAEFEE  255 (677)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHH-HHHHhhhH----H------HHHH---------------------HHHHHHHHHH
Confidence            9999999999999887777765432 22111000    0      0000                     111112232 


Q ss_pred             -HhhhHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHhcccCc-H----HHHHHHHHHHHhcCCCChhhHHHHHHHhccc
Q 005817          306 -EQGLRVLQTIYSGAVEALPSS--FNLRQRFFEIVEATNLAQS-D----DMHDKILSDMQRDFLVDPKYWDWLARLKMTD  377 (676)
Q Consensus       306 -~~~~~~a~~iy~~Al~~~p~~--~~~~~~~~~~~~~fe~~~~-~----~~a~~il~~~~~~~p~~~~~w~~la~~~~~~  377 (676)
                       .+.++.|+.||+-|+..+|.+  .++...|..+-.+|+.... .    ..-+--|+..++.+|.+.++|+.+.++.-. 
T Consensus       256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~-  334 (677)
T KOG1915|consen  256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES-  334 (677)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh-
Confidence             246899999999999999987  5666666666666653211 1    112234788999999999999999988743 


Q ss_pred             cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHH
Q 005817          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA  454 (676)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~a  454 (676)
                                  .|+.++.+++|++|+.++|...   .|..|+-+++.......          ....+.++++.+|+.+
T Consensus       335 ------------~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeE----------le~ed~ertr~vyq~~  392 (677)
T KOG1915|consen  335 ------------VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEE----------LEAEDVERTRQVYQAC  392 (677)
T ss_pred             ------------cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH----------HHhhhHHHHHHHHHHH
Confidence                        3678899999999999998632   67777666655432111          0135689999999999


Q ss_pred             HHcCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHH
Q 005817          455 EAMGCLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELL  530 (676)
Q Consensus       455 l~~~p~~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f  530 (676)
                      +..-|..    ..+|+.||.+++++.+...|++++..|+ +.||.+ .+...||.++.+..          ++++++++|
T Consensus       393 l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-G~cPK~-KlFk~YIelElqL~----------efDRcRkLY  460 (677)
T KOG1915|consen  393 LDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-GKCPKD-KLFKGYIELELQLR----------EFDRCRKLY  460 (677)
T ss_pred             HhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-ccCCch-hHHHHHHHHHHHHh----------hHHHHHHHH
Confidence            9986653    6899999999999999999999999999 999987 68999999999876          489999999


Q ss_pred             HHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005817          531 KCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL  608 (676)
Q Consensus       531 ~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al  608 (676)
                      ++-|...|.  +...|..|+.+-...+  +.++.+|+.|+.....+-    ...++..|++|+...|.+++||++|++.+
T Consensus       461 Ekfle~~Pe--~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm----pellwkaYIdFEi~~~E~ekaR~LYerlL  534 (677)
T KOG1915|consen  461 EKFLEFSPE--NCYAWSKYAELETSLGDTDRARAIFELAISQPALDM----PELLWKAYIDFEIEEGEFEKARALYERLL  534 (677)
T ss_pred             HHHHhcChH--hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc----HHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence            999987764  3668998887443333  567888998885322221    33556699999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHhhccCC--C--------CccchHHHHHHHHHHHhhCCCC------chHHHHHHHHHhhcCCcc
Q 005817          609 ALPRPGLVLYQNCIELENNLASV--G--------DKDSLVNARKLFESALATYDQN------TSLWRDYYSTETKVSFSL  672 (676)
Q Consensus       609 ~~~p~~~~l~~~~i~lE~~~~~~--~--------~~~~~~~aR~lye~al~~~~~~------~~lW~~y~~fE~~~G~~~  672 (676)
                      ...+. .++|+.++.+|.+..+.  +        +..++.+||++|++|..++.++      ..+--.|-+||..+|+..
T Consensus       535 ~rt~h-~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~  613 (677)
T KOG1915|consen  535 DRTQH-VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEG  613 (677)
T ss_pred             Hhccc-chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchh
Confidence            86544 45999999999754321  1        1337899999999999987622      267788889999999764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=100.00  E-value=1.9e-46  Score=386.13  Aligned_cols=500  Identities=17%  Similarity=0.257  Sum_probs=372.0

Q ss_pred             hhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCC
Q 005817           77 QRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKG  156 (676)
Q Consensus        77 ~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~  156 (676)
                      ....||+.|.|++.++..|+|||++...                                 +..++...||||||..+|+
T Consensus        12 EDvpfEeEilRnp~svk~W~RYIe~k~~---------------------------------sp~k~~~~lYERal~~lp~   58 (835)
T KOG2047|consen   12 EDVPFEEEILRNPFSVKCWLRYIEHKAG---------------------------------SPDKQRNLLYERALKELPG   58 (835)
T ss_pred             cccchHHHHHcCchhHHHHHHHHHHHcc---------------------------------CChHHHHHHHHHHHHHCCC
Confidence            4678999999999999999999998632                                 2356778999999999999


Q ss_pred             CHHHHHHHHHHHHHc---c------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--C
Q 005817          157 DIELWFKYMEFCRQR---K------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT--S  225 (676)
Q Consensus       157 ~~~lW~~y~~~~~~~---~------~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~--~  225 (676)
                      |.++|..|+..-..+   .      +..+++.|+||+.....+|.+|+.|+.+.+ .+|+++..|.+|++||+..|-  +
T Consensus        59 sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~-~Q~~iT~tR~tfdrALraLpvtqH  137 (835)
T KOG2047|consen   59 SYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLI-KQGLITRTRRTFDRALRALPVTQH  137 (835)
T ss_pred             chHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-hcchHHHHHHHHHHHHHhCchHhh
Confidence            999999999775443   1      246789999999998899999999999998 688999999999999999994  5


Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhh
Q 005817          226 EELWVEYLRMELTYL---NKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVD  302 (676)
Q Consensus       226 ~~lW~~y~~~e~~~~---~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (676)
                      ..+|.-|++|-...+   ..++..+++|..+.+..                                        ++-+.
T Consensus       138 ~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~----------------------------------------eeyie  177 (835)
T KOG2047|consen  138 DRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR----------------------------------------EEYIE  177 (835)
T ss_pred             ccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH----------------------------------------HHHHH
Confidence            789999999987653   33455555666543210                                        01111


Q ss_pred             hHH-HhhhHHHHHHHHHHHh-------cCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC-hhhHHHHHHH
Q 005817          303 LFR-EQGLRVLQTIYSGAVE-------ALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD-PKYWDWLARL  373 (676)
Q Consensus       303 ~~~-~~~~~~a~~iy~~Al~-------~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~-~~~w~~la~~  373 (676)
                      .+- ....+.|...|...+.       ..|++..+|..++++..+.......-..+.++..++..||+. +.+|..+|.+
T Consensus       178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY  257 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY  257 (835)
T ss_pred             HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence            111 1244566666666653       457788999999999988764334456889999999999999 7789999999


Q ss_pred             hccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccc----------cc-cC-----
Q 005817          374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKE----------ET-RD-----  433 (676)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~----------d~-~~-----  433 (676)
                      |+.             .|.+++|+++|++|+..+.+..    +++.|+.|+++......+          ++ .+     
T Consensus       258 YIr-------------~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a  324 (835)
T KOG2047|consen  258 YIR-------------SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA  324 (835)
T ss_pred             HHH-------------hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence            987             5889999999999999988754    999999999875432111          00 00     


Q ss_pred             -------------CCCC---------h----------------------------------------------hhhhhHH
Q 005817          434 -------------SELP---------S----------------------------------------------HVEHYIS  445 (676)
Q Consensus       434 -------------~~~~---------~----------------------------------------------~~~~~~~  445 (676)
                                   ++|+         +                                              -..|.++
T Consensus       325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~  404 (835)
T KOG2047|consen  325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD  404 (835)
T ss_pred             HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence                         0000         0                                              0124678


Q ss_pred             HHHHHHHHHHHcCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-----------------ChHHHHHHHH
Q 005817          446 HLLTVYEKAEAMGCLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS-----------------DSVQLWLLRI  504 (676)
Q Consensus       446 ~a~~iye~al~~~p~~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P-----------------~~~~lW~~~i  504 (676)
                      .||.++++|+..+...    ..+|+.|++++++..+++.|+++.++|+..+-+                 +|..+|..|+
T Consensus       405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~  484 (835)
T KOG2047|consen  405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA  484 (835)
T ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence            8999999999885443    468999999999999999999999999832111                 2678999999


Q ss_pred             HHHHHhcccc-------------CCCC----Ch----------------------------------------------h
Q 005817          505 SVEIRCVTRN-------------SFSP----SK----------------------------------------------A  521 (676)
Q Consensus       505 ~l~~~~~~~~-------------~~~p----~~----------------------------------------------~  521 (676)
                      ++++..|+..             ..+|    |+                                              .
T Consensus       485 DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~  564 (835)
T KOG2047|consen  485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT  564 (835)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence            9999887542             2334    21                                              1


Q ss_pred             chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHH
Q 005817          522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ  599 (676)
Q Consensus       522 ~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~  599 (676)
                      .+++++++|++||..||+..+..|+..|+.+.++.+  ...-.++++|...+.+..    ..+++..|+......-|+..
T Consensus       565 klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~----~l~myni~I~kaae~yGv~~  640 (835)
T KOG2047|consen  565 KLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQ----RLDMYNIYIKKAAEIYGVPR  640 (835)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHHHhCCcc
Confidence            346666666666666666666666666665443332  223345555554443332    34455566666666677888


Q ss_pred             HHHHHHHHHcCCCCCH--HHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC--CCchHHHHHHHHHhhcCCccc
Q 005817          600 AREMYKRFLALPRPGL--VLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNTSLWRDYYSTETKVSFSLL  673 (676)
Q Consensus       600 Ar~iy~~al~~~p~~~--~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~--~~~~lW~~y~~fE~~~G~~~~  673 (676)
                      +|.||++||+.-|.+.  .++..+++||.++|      +++|||++|-.+.+.++  .++++|..|-.||.+|||.+.
T Consensus       641 TR~iYekaIe~Lp~~~~r~mclrFAdlEtklG------EidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT  712 (835)
T KOG2047|consen  641 TREIYEKAIESLPDSKAREMCLRFADLETKLG------EIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT  712 (835)
T ss_pred             cHHHHHHHHHhCChHHHHHHHHHHHHHhhhhh------hHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence            8999999988766653  48899999999999      99999999999999987  677999999999999999764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=100.00  E-value=1.1e-38  Score=329.31  Aligned_cols=547  Identities=17%  Similarity=0.204  Sum_probs=408.2

Q ss_pred             hHHHHHHcCCCCHHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhh--cccchhhhhhhhccccc
Q 005817           56 ELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSI--GRDEGRERRVSKKMKKS  133 (676)
Q Consensus        56 e~~~~~~~~~~~~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~--~~~~~~~~~~~~~~~~~  133 (676)
                      =|.||++..-.+..+|.||.+.|..+-.-...+|++++.|+..+..|...+++-.+|+-.+  |..+||.    .++...
T Consensus       249 YLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS----eDvWLe  324 (913)
T KOG0495|consen  249 YLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS----EDVWLE  324 (913)
T ss_pred             HHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch----HHHHHH
Confidence            4677777777788999999999999999999999999999999999999999999887322  3333332    222222


Q ss_pred             cccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHH
Q 005817          134 VSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARA  213 (676)
Q Consensus       134 ~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~  213 (676)
                      .++.....-+..|...|++..|.|+.||.+-++++....  .-.+|+.+||+..|++..||..++.++     +.+.||.
T Consensus       325 aiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~--~K~RVlRKALe~iP~sv~LWKaAVelE-----~~~dari  397 (913)
T KOG0495|consen  325 AIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTK--NKKRVLRKALEHIPRSVRLWKAAVELE-----EPEDARI  397 (913)
T ss_pred             HHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHH--HHHHHHHHHHHhCCchHHHHHHHHhcc-----ChHHHHH
Confidence            222233445778888899999999999998888865432  336788888888898888998887776     3344888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc-hhHHhhhhhcc------------------
Q 005817          214 LMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRD-ADEKRWINENK------------------  274 (676)
Q Consensus       214 ~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~-~~~~~~~~~~~------------------  274 (676)
                      ++.||+++||.|.++|+.|+++|.....     +.+|..+-+.++.++.. +....+.+.+.                  
T Consensus       398 lL~rAveccp~s~dLwlAlarLetYenA-----kkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~  472 (913)
T KOG0495|consen  398 LLERAVECCPQSMDLWLALARLETYENA-----KKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQA  472 (913)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHH-----HHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence            8899999999888889888888875422     11233322222222100 00000000000                  


Q ss_pred             -------ccccCCC---CCCCCC----CC------CCCcc-h---hhhhhhhhHH-HhhhHHHHHHHHHHHhcCCCchhH
Q 005817          275 -------GLFMPLD---GEVENT----DG------SQPEN-M---ESQKSVDLFR-EQGLRVLQTIYSGAVEALPSSFNL  329 (676)
Q Consensus       275 -------~~~~~~~---~~~~~~----~~------~~~~~-~---~~~~~~~~~~-~~~~~~a~~iy~~Al~~~p~~~~~  329 (676)
                             +.|+.-.   +..+..    .+      .+++. +   .+.+-.+.+. .+.++.|++||..|++.+|....+
T Consensus       473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl  552 (913)
T KOG0495|consen  473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL  552 (913)
T ss_pred             cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH
Confidence                   0111000   000000    00      01111 1   1222223332 246789999999999999999999


Q ss_pred             HHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc
Q 005817          330 RQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS  409 (676)
Q Consensus       330 ~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~  409 (676)
                      |.....+-..+   ++.+....++.+++...|..+.+|+++|+..+.             .+++..|+.++.+|.+..|+
T Consensus       553 Wlra~~~ek~h---gt~Esl~Allqkav~~~pkae~lwlM~ake~w~-------------agdv~~ar~il~~af~~~pn  616 (913)
T KOG0495|consen  553 WLRAAMFEKSH---GTRESLEALLQKAVEQCPKAEILWLMYAKEKWK-------------AGDVPAARVILDQAFEANPN  616 (913)
T ss_pred             HHHHHHHHHhc---CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh-------------cCCcHHHHHHHHHHHHhCCC
Confidence            98764333222   467889999999999999999999999998876             47789999999999999997


Q ss_pred             hh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005817          410 SM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKL  488 (676)
Q Consensus       410 ~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~a  488 (676)
                      +. +|.+-++++-.                  ...+++||.++.+|... ..++.+|+.++.++.-+++.++|+.+++++
T Consensus       617 seeiwlaavKle~e------------------n~e~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~  677 (913)
T KOG0495|consen  617 SEEIWLAAVKLEFE------------------NDELERARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEA  677 (913)
T ss_pred             cHHHHHHHHHHhhc------------------cccHHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHH
Confidence            55 99888777654                  14589999999999987 456899999999999999999999999999


Q ss_pred             hhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHH
Q 005817          489 CSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEI  566 (676)
Q Consensus       489 l~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~  566 (676)
                      + +.+|+...+|++..+++++.+          +++.+++.|..+++.||.  +.+||......-++.+  ..++.++++
T Consensus       678 l-k~fp~f~Kl~lmlGQi~e~~~----------~ie~aR~aY~~G~k~cP~--~ipLWllLakleEk~~~~~rAR~ildr  744 (913)
T KOG0495|consen  678 L-KSFPDFHKLWLMLGQIEEQME----------NIEMAREAYLQGTKKCPN--SIPLWLLLAKLEEKDGQLVRARSILDR  744 (913)
T ss_pred             H-HhCCchHHHHHHHhHHHHHHH----------HHHHHHHHHHhccccCCC--CchHHHHHHHHHHHhcchhhHHHHHHH
Confidence            9 999999999999999999875          589999999999999996  4789998766444443  456778888


Q ss_pred             HHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCC----------C----
Q 005817          567 ALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASV----------G----  632 (676)
Q Consensus       567 a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~----------~----  632 (676)
                      +... +|++     ..++..-+.++.+.|+.+.|+.+..+|+..||.+..+|...|.||...+..          +    
T Consensus       745 arlk-NPk~-----~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph  818 (913)
T KOG0495|consen  745 ARLK-NPKN-----ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH  818 (913)
T ss_pred             HHhc-CCCc-----chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch
Confidence            8753 4544     244447789999999999999999999999999999999999998653221          1    


Q ss_pred             ----------CccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcc
Q 005817          633 ----------DKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSL  672 (676)
Q Consensus       633 ----------~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~  672 (676)
                                +...++.+|+.|++|+..+|+..++|-.+..||..||+.+
T Consensus       819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee  868 (913)
T KOG0495|consen  819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE  868 (913)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence                      1337899999999999999999999999999999999754

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=100.00  E-value=5.5e-41  Score=318.71  Aligned_cols=196  Identities=37%  Similarity=0.665  Sum_probs=187.0

Q ss_pred             hHHHHHHHHHhhhHhHHHHHHcCCCCHHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 005817           42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEG  121 (676)
Q Consensus        42 ma~~v~~~~e~~~~e~~~~~~~~~~~~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~  121 (676)
                      |++.||..|||||||++||.++||||++|++-|++.|+.||.+|+|+...+.||++||+||.++++||.+|.+++..+- 
T Consensus         1 m~ekiqyymEq~IpEleDl~ekgiFs~dE~~~IvktRr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~-   79 (435)
T COG5191           1 MVEKIQYYMEQMIPELEDLKEKGIFSPDELRRIVKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGK-   79 (435)
T ss_pred             CchHHHHHHHHhchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcc-
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987653311 


Q ss_pred             hhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817          122 RERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW  200 (676)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~  200 (676)
                               +.+.+|+++++++..+|.|+..+||+|+++|..|+.+..+.| +..+.++|..||+.||++.++|+.++.+
T Consensus        80 ---------K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~  150 (435)
T COG5191          80 ---------KASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAF  150 (435)
T ss_pred             ---------cccchhccccceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccc
Confidence                     578899999999999999999999999999999999998887 5789999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005817          201 EFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK  247 (676)
Q Consensus       201 e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~  247 (676)
                      +++.++|++.+|.+|++|||++|+++.+|.+|++||+.++.++-+|+
T Consensus       151 e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~yiTKL~~R~  197 (435)
T COG5191         151 ELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELMYITKLINRR  197 (435)
T ss_pred             hhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999888

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=100.00  E-value=2.6e-32  Score=282.33  Aligned_cols=444  Identities=19%  Similarity=0.211  Sum_probs=356.8

Q ss_pred             cccccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHH
Q 005817          132 KSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTA  210 (676)
Q Consensus       132 ~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~  210 (676)
                      .+-.+...+++++.|++.....+|.++.-|+.-+.++...| ...++++..+.++.+|++.++|+.++++.     ..+.
T Consensus       259 ~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLh-----p~d~  333 (913)
T KOG0495|consen  259 TSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLH-----PPDV  333 (913)
T ss_pred             CccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcC-----ChHH
Confidence            34456777899999999999999999999999999998877 57889999999999999999999999874     4566


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817          211 ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS  290 (676)
Q Consensus       211 Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (676)
                      |+.+...|++++|+|..||+..+.+|....++-+.    ++.+.+..++     ++..|..     .+.+          
T Consensus       334 aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RV----lRKALe~iP~-----sv~LWKa-----AVel----------  389 (913)
T KOG0495|consen  334 AKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRV----LRKALEHIPR-----SVRLWKA-----AVEL----------  389 (913)
T ss_pred             HHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHH----HHHHHHhCCc-----hHHHHHH-----HHhc----------
Confidence            99999999999999999999999999876555443    4433333222     3333321     0011          


Q ss_pred             CCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHH
Q 005817          291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWL  370 (676)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~l  370 (676)
                                      .+.+.|+.++.+|++.+|.+.++|..+    ++++   +++.++++++++.+.-|+++..|+..
T Consensus       390 ----------------E~~~darilL~rAveccp~s~dLwlAl----arLe---tYenAkkvLNkaRe~iptd~~IWita  446 (913)
T KOG0495|consen  390 ----------------EEPEDARILLERAVECCPQSMDLWLAL----ARLE---TYENAKKVLNKAREIIPTDREIWITA  446 (913)
T ss_pred             ----------------cChHHHHHHHHHHHHhccchHHHHHHH----HHHH---HHHHHHHHHHHHHhhCCCChhHHHHH
Confidence                            022348999999999999999999875    3443   67899999999999999999999999


Q ss_pred             HHHhccccCCC---------------C-------------------C--------------CCc---------------C
Q 005817          371 ARLKMTDSVSK---------------D-------------------G--------------TSE---------------D  387 (676)
Q Consensus       371 a~~~~~~~~~~---------------~-------------------~--------------~~~---------------~  387 (676)
                      |+++-.+++..               .                   +              .++               .
T Consensus       447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~  526 (913)
T KOG0495|consen  447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC  526 (913)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence            99885443210               0                   0              000               0


Q ss_pred             cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817          388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (676)
Q Consensus       388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~  466 (676)
                      +..+.++-|+.||..+|+..|..+ +|...+.|+..+                  |..+....++++|+...|..+.+|+
T Consensus       527 ~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~h------------------gt~Esl~Allqkav~~~pkae~lwl  588 (913)
T KOG0495|consen  527 EKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSH------------------GTRESLEALLQKAVEQCPKAEILWL  588 (913)
T ss_pred             HhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhc------------------CcHHHHHHHHHHHHHhCCcchhHHH
Confidence            112346789999999999999766 999999888764                  5578899999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHH
Q 005817          467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLW  546 (676)
Q Consensus       467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW  546 (676)
                      .|+.-.+..|++..|+.++..|. ..+|+|.++|+..+.++..+.          ..++++.+|.+|-...+.   ..+|
T Consensus       589 M~ake~w~agdv~~ar~il~~af-~~~pnseeiwlaavKle~en~----------e~eraR~llakar~~sgT---eRv~  654 (913)
T KOG0495|consen  589 MYAKEKWKAGDVPAARVILDQAF-EANPNSEEIWLAAVKLEFEND----------ELERARDLLAKARSISGT---ERVW  654 (913)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHH-HhCCCcHHHHHHHHHHhhccc----------cHHHHHHHHHHHhccCCc---chhh
Confidence            99999999999999999999999 899999999999999997654          479999999999775543   4578


Q ss_pred             HHHHHHHHhh---hHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005817          547 LMALKFFMNQ---KHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIE  623 (676)
Q Consensus       547 ~~~l~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~  623 (676)
                      ..++. ++..   .+.+.++++.+++.+ |+     ...++.+..+.+-+.++++.||..|...+..+|.+..+|.....
T Consensus       655 mKs~~-~er~ld~~eeA~rllEe~lk~f-p~-----f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak  727 (913)
T KOG0495|consen  655 MKSAN-LERYLDNVEEALRLLEEALKSF-PD-----FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK  727 (913)
T ss_pred             HHHhH-HHHHhhhHHHHHHHHHHHHHhC-Cc-----hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence            77654 3322   245566677777654 33     24555566777888899999999999999999999999999999


Q ss_pred             HHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcc
Q 005817          624 LENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSL  672 (676)
Q Consensus       624 lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~  672 (676)
                      ||...+      ++.+||.+++++.-.+|.+..+|+.-++||..+|+.+
T Consensus       728 leEk~~------~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~  770 (913)
T KOG0495|consen  728 LEEKDG------QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE  770 (913)
T ss_pred             HHHHhc------chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence            998887      7899999999999999999999999999999999865

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.95  E-value=3.7e-24  Score=221.99  Aligned_cols=524  Identities=12%  Similarity=0.142  Sum_probs=319.5

Q ss_pred             HHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHh
Q 005817           74 IVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMR  153 (676)
Q Consensus        74 i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~  153 (676)
                      -.+.+-.||+.+.--+.+-.-|-+|++.          |...+...+          ..    .....-....|+||+..
T Consensus        42 ~k~~~~lYERal~~lp~sykiW~~YL~~----------R~~~vk~~~----------~T----~~~~~~vn~c~er~lv~   97 (835)
T KOG2047|consen   42 DKQRNLLYERALKELPGSYKIWYDYLKA----------RRAQVKHLC----------PT----DPAYESVNNCFERCLVF   97 (835)
T ss_pred             hHHHHHHHHHHHHHCCCchHHHHHHHHH----------HHHHhhccC----------CC----ChHHHHHHHHHHHHHHH
Confidence            3567788999999999999999999965          222221111          11    12455667899999998


Q ss_pred             CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005817          154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPK--VPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV  230 (676)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~--~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~  230 (676)
                      ....+.+|+.|++|+.+++ ..+.+.+|+|||...|-  +..+|-.|++|. +..+-.+.+..+|.|-|+..|.+.+=++
T Consensus        98 mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv-~~~~lPets~rvyrRYLk~~P~~~eeyi  176 (835)
T KOG2047|consen   98 MHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFV-ESHGLPETSIRVYRRYLKVAPEAREEYI  176 (835)
T ss_pred             HhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHH-HhCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence            8888899999999999988 47889999999999996  689999999998 5787888999999999999998766666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCC-CCCCCC---CCC-----cc-hhhhhh
Q 005817          231 EYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGE-VENTDG---SQP-----EN-MESQKS  300 (676)
Q Consensus       231 ~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~-----~~-~~~~~~  300 (676)
                      +|+..-....+....-..++....          ...+.++.+.++|..+++. ..+|+.   .++     .| ..+.++
T Consensus       177 e~L~~~d~~~eaa~~la~vln~d~----------f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq  246 (835)
T KOG2047|consen  177 EYLAKSDRLDEAAQRLATVLNQDE----------FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ  246 (835)
T ss_pred             HHHHhccchHHHHHHHHHhcCchh----------hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH
Confidence            666543322221111111222110          1122233344455544332 233332   111     11 246778


Q ss_pred             hhhHHH---------hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHH-----------------------H
Q 005817          301 VDLFRE---------QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDD-----------------------M  348 (676)
Q Consensus       301 ~~~~~~---------~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~-----------------------~  348 (676)
                      ++.+|.         |.++.|+.+|+.|+..+.+..+|- ..++.|..|++.....                       .
T Consensus       247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt-~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~  325 (835)
T KOG2047|consen  247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFT-QIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR  325 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHH-HHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence            888874         468999999999999988777775 4668888886421000                       0


Q ss_pred             HHHHH--------HHHHhcCCCChhhHHHHHHHhccccCC-----------CCCCCc--------------CcchhHHHH
Q 005817          349 HDKIL--------SDMQRDFLVDPKYWDWLARLKMTDSVS-----------KDGTSE--------------DIVPSQMQK  395 (676)
Q Consensus       349 a~~il--------~~~~~~~p~~~~~w~~la~~~~~~~~~-----------~~~~~~--------------~~~~~~~~~  395 (676)
                      .++++        +-+++.+|++...|.....++-.....           .++..+              -+..++++.
T Consensus       326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~  405 (835)
T KOG2047|consen  326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD  405 (835)
T ss_pred             HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence            11111        335677888888887766655321110           011110              011456788


Q ss_pred             HHHHHHHHhhcc-Cch----hHHHHHHHHHHHHhcCc-------------cccc-----cCCCCCh--------------
Q 005817          396 AIQVYEEALKNV-PSS----MIFDLYTKFLMDMIAPK-------------KEET-----RDSELPS--------------  438 (676)
Q Consensus       396 A~~~ye~al~~~-~~~----~lw~~y~~~~~~~~~~~-------------~~d~-----~~~~~~~--------------  438 (676)
                      ||.+|++|++.. ++.    .+|-.|+..++..-..+             ....     ..+.|..              
T Consensus       406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D  485 (835)
T KOG2047|consen  406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD  485 (835)
T ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence            888888887642 232    15555555444321100             0000     0000000              


Q ss_pred             --hhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc--CCChHHHHHHHHHHHH-Hhccc
Q 005817          439 --HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK--LSDSVQLWLLRISVEI-RCVTR  513 (676)
Q Consensus       439 --~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~--~P~~~~lW~~~i~l~~-~~~~~  513 (676)
                        .--|.++..+.+|++.+..-..+|.+-++||-|+..+.-++++.++|++++ ..  +|+-.++|..|+.-.. +.|..
T Consensus       486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI-~LFk~p~v~diW~tYLtkfi~rygg~  564 (835)
T KOG2047|consen  486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGI-SLFKWPNVYDIWNTYLTKFIKRYGGT  564 (835)
T ss_pred             HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCC-ccCCCccHHHHHHHHHHHHHHHhcCC
Confidence              001334555555555555555555555555555555555555555555555 42  2334455555543222 22211


Q ss_pred             c------------CCCC-C--------h-------hchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHH
Q 005817          514 N------------SFSP-S--------K-------ADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKL  563 (676)
Q Consensus       514 ~------------~~~p-~--------~-------~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~  563 (676)
                      .            ..+| .        |       +-...+..+|++|..+++......+|..|+..-...-  ...+.+
T Consensus       565 klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~i  644 (835)
T KOG2047|consen  565 KLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREI  644 (835)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence            0            0111 0        0       1245678899999999988888889988765433221  346789


Q ss_pred             HHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhccCCCCccchHHHH
Q 005817          564 VEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP--GLVLYQNCIELENNLASVGDKDSLVNAR  641 (676)
Q Consensus       564 ~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~--~~~l~~~~i~lE~~~~~~~~~~~~~~aR  641 (676)
                      |++|+.+++...    ...+-..|++++.+.|.+++||.||.-+-..++|  .+.+|..+-.||...|      +-+-.|
T Consensus       645 YekaIe~Lp~~~----~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHG------nedT~k  714 (835)
T KOG2047|consen  645 YEKAIESLPDSK----AREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHG------NEDTYK  714 (835)
T ss_pred             HHHHHHhCChHH----HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcC------CHHHHH
Confidence            999998765432    2334445788899999999999999998776655  4679999999999998      445555


Q ss_pred             HHH
Q 005817          642 KLF  644 (676)
Q Consensus       642 ~ly  644 (676)
                      +..
T Consensus       715 eML  717 (835)
T KOG2047|consen  715 EML  717 (835)
T ss_pred             HHH
Confidence            443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.93  E-value=1.6e-22  Score=206.53  Aligned_cols=434  Identities=15%  Similarity=0.168  Sum_probs=307.0

Q ss_pred             HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHH
Q 005817           82 EYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW  161 (676)
Q Consensus        82 E~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW  161 (676)
                      +.+|.-+|.++..|-.-|+.-.+                                 ..+..++..||+.+..||.+...|
T Consensus        10 ~~rie~nP~di~sw~~lire~qt---------------------------------~~~~~~R~~YEq~~~~FP~s~r~W   56 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQT---------------------------------QPIDKVRETYEQLVNVFPSSPRAW   56 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHcc---------------------------------CCHHHHHHHHHHHhccCCCCcHHH
Confidence            78899999999999888874311                                 136778999999999999999999


Q ss_pred             HHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHH
Q 005817          162 FKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV-------CPTSEELWVEYL  233 (676)
Q Consensus       162 ~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~-------~p~~~~lW~~y~  233 (676)
                      ..||+-+...+ +..+.++|.|||..-= +.+||..|+.+-.+.++....+|..+-+|..+       .+.|..+|.+|+
T Consensus        57 ~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi  135 (656)
T KOG1914|consen   57 KLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYI  135 (656)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence            99999998876 6899999999998644 38999999999888888888888776666543       246789999999


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (676)
Q Consensus       234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (676)
                      .|.... .           +            ..+|.                            +      ++.++.+|
T Consensus       136 ~FL~~v-e-----------a------------~gk~e----------------------------e------~QRI~~vR  157 (656)
T KOG1914|consen  136 NFLEGV-E-----------A------------VGKYE----------------------------E------NQRITAVR  157 (656)
T ss_pred             HHHHcc-c-----------c------------cccHH----------------------------H------HHHHHHHH
Confidence            986532 0           0            00111                            1      13568889


Q ss_pred             HHHHHHHhcCCCc-hhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhH
Q 005817          314 TIYSGAVEALPSS-FNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ  392 (676)
Q Consensus       314 ~iy~~Al~~~p~~-~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~  392 (676)
                      .+|++|+...-.+ ..+|.+|    ..||..-+...+++++....                                 ..
T Consensus       158 riYqral~tPm~nlEkLW~DY----~~fE~~IN~~tarK~i~e~s---------------------------------~~  200 (656)
T KOG1914|consen  158 RIYQRALVTPMHNLEKLWKDY----EAFEQEINIITARKFIGERS---------------------------------PE  200 (656)
T ss_pred             HHHHHHhcCccccHHHHHHHH----HHHHHHHHHHHHHHHHHhhC---------------------------------HH
Confidence            9999999986555 3566554    55654333344554443321                                 23


Q ss_pred             HHHHHHHHHHH------hhc----cC---c------hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817          393 MQKAIQVYEEA------LKN----VP---S------SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (676)
Q Consensus       393 ~~~A~~~ye~a------l~~----~~---~------~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~  453 (676)
                      +..|+.+|++-      +..    +|   |      ..+|..+|+++.+.-.. +.+         ..-...+..-+|+.
T Consensus       201 Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~-t~~---------~~~~~~Rv~yayeQ  270 (656)
T KOG1914|consen  201 YMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR-TLD---------GTMLTRRVMYAYEQ  270 (656)
T ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc-ccc---------ccHHHHHHHHHHHH
Confidence            44444444432      221    12   1      12899999999874322 111         00123467788999


Q ss_pred             HHHcCCCcHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCC
Q 005817          454 AEAMGCLTEDIAHRYVTLYLQLGK--------------LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS  519 (676)
Q Consensus       454 al~~~p~~~~lw~~~~~l~~~~~~--------------~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~  519 (676)
                      ++..-+..|++|..|..++...++              .++|..+|++++......+..+...+++.++..-.       
T Consensus       271 ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~-------  343 (656)
T KOG1914|consen  271 CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD-------  343 (656)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc-------
Confidence            999989999999999999988887              78899999999954444567788888888775421       


Q ss_pred             hhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCH
Q 005817          520 KADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI  597 (676)
Q Consensus       520 ~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~  597 (676)
                      ++..+...+++++++.....+ -.-+|..++++..+..  +.++.+|.+|.+....-    ...-+..+++++. -.++.
T Consensus       344 ~n~~~~~~~~~~~ll~~~~~~-~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~----hhVfVa~A~mEy~-cskD~  417 (656)
T KOG1914|consen  344 DNKEKKVHEIYNKLLKIEDID-LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR----HHVFVAAALMEYY-CSKDK  417 (656)
T ss_pred             cchhhhhHHHHHHHHhhhccC-CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc----chhhHHHHHHHHH-hcCCh
Confidence            112455667788877643221 2235777777655443  56788999877521110    0112222344443 36889


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh--CC-CCchHHHHHHHHHhhcCCccc
Q 005817          598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YD-QNTSLWRDYYSTETKVSFSLL  673 (676)
Q Consensus       598 ~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~--~~-~~~~lW~~y~~fE~~~G~~~~  673 (676)
                      +-|..||+-++.-.+.++.+-.+|+++-...+      +-+++|.+||+++..  .+ +...+|..|++||.++||..+
T Consensus       418 ~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN------dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s  490 (656)
T KOG1914|consen  418 ETAFRIFELGLKKFGDSPEYVLKYLDFLSHLN------DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS  490 (656)
T ss_pred             hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC------cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence            99999999999999999999999999988877      779999999999998  33 456999999999999999754

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.89  E-value=3.5e-19  Score=182.34  Aligned_cols=426  Identities=16%  Similarity=0.227  Sum_probs=288.6

Q ss_pred             HHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHH
Q 005817           68 RHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIY  147 (676)
Q Consensus        68 ~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  147 (676)
                      ..+.+.|-+.|..+|..+..-|...+-|..||+.|+.-                                ...+.+..+|
T Consensus        29 e~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s--------------------------------kdfe~VEkLF   76 (656)
T KOG1914|consen   29 EAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELAS--------------------------------KDFESVEKLF   76 (656)
T ss_pred             HHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh--------------------------------hhHHHHHHHH
Confidence            34455788899999999999999999999999999642                                1367788999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcc---C---chHHHHHHHHHHh---CCCCHHHHHHHHHHHH--------HhCCCHHH
Q 005817          148 RLAVMRFKGDIELWFKYMEFCRQRK---N---GRMKKVLAQVIRF---HPKVPGVWIYAAAWEF--------DHNLNVTA  210 (676)
Q Consensus       148 eral~~~p~~~~lW~~y~~~~~~~~---~---~~~~~~~~ral~~---~P~~~~lW~~~a~~e~--------~~~~~~~~  210 (676)
                      .|||..-- +++||..|+.+.++.+   .   ..+.++|+=++..   .|.+..+|..|+.|.-        +.+..++.
T Consensus        77 ~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~  155 (656)
T KOG1914|consen   77 SRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITA  155 (656)
T ss_pred             HHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHH
Confidence            99998865 6999999999998763   1   2456788888775   5678899999998741        23347999


Q ss_pred             HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCC
Q 005817          211 ARALMQNGLRVCPTS-EELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG  289 (676)
Q Consensus       211 Ar~~~~ral~~~p~~-~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (676)
                      .|++|+|||.+--++ +++|..|..||.. ++.+.+|+-+....                                    
T Consensus       156 vRriYqral~tPm~nlEkLW~DY~~fE~~-IN~~tarK~i~e~s------------------------------------  198 (656)
T KOG1914|consen  156 VRRIYQRALVTPMHNLEKLWKDYEAFEQE-INIITARKFIGERS------------------------------------  198 (656)
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHHH-HHHHHHHHHHHhhC------------------------------------
Confidence            999999999864444 7899999999986 56666666432211                                    


Q ss_pred             CCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhc----------CCC--------chhHHHHHHHHHHHhccc---C--cH
Q 005817          290 SQPENMESQKSVDLFREQGLRVLQTIYSGAVEA----------LPS--------SFNLRQRFFEIVEATNLA---Q--SD  346 (676)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~----------~p~--------~~~~~~~~~~~~~~fe~~---~--~~  346 (676)
                                       ..+..|+.+|+.....          +|.        ..++|..+++.-..-.+.   +  -.
T Consensus       199 -----------------~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~  261 (656)
T KOG1914|consen  199 -----------------PEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT  261 (656)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHH
Confidence                             1233444444433211          111        146787777654432221   1  12


Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCC-CCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHHHHHHHHHHH
Q 005817          347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVS-KDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDM  423 (676)
Q Consensus       347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~-~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~~y~~~~~~~  423 (676)
                      ...--++++++.-.+-++++|...+.+..+.+.- +......+.+..-++|..+||+++..+....  ++..|+++++..
T Consensus       262 ~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~  341 (656)
T KOG1914|consen  262 RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESR  341 (656)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence            3445578999999999999999888876542110 0000011223446789999999998765432  778888888764


Q ss_pred             hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCCChHHHHH
Q 005817          424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE-DIAHRYVTLYLQLGKLDEARKLAAKLCSG-KLSDSVQLWL  501 (676)
Q Consensus       424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~-~lw~~~~~l~~~~~~~~~A~~l~~~al~~-~~P~~~~lW~  501 (676)
                      ..    +           +..++.-++|++++...-.++ -+|+.|..+..+...++.||.++.+|-+. ..|+.+-+-.
T Consensus       342 ~~----~-----------n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~  406 (656)
T KOG1914|consen  342 YD----D-----------NKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA  406 (656)
T ss_pred             cc----c-----------chhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence            31    1           235567778888777633333 36888998888888888899888887621 1222333333


Q ss_pred             HHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCc
Q 005817          502 LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF  581 (676)
Q Consensus       502 ~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  581 (676)
                      .++  +-....         |..-+..+|+-+|+..+                                   +     .+
T Consensus       407 A~m--Ey~csk---------D~~~AfrIFeLGLkkf~-----------------------------------d-----~p  435 (656)
T KOG1914|consen  407 ALM--EYYCSK---------DKETAFRIFELGLKKFG-----------------------------------D-----SP  435 (656)
T ss_pred             HHH--HHHhcC---------ChhHHHHHHHHHHHhcC-----------------------------------C-----Ch
Confidence            332  222211         23444444444443222                                   1     13


Q ss_pred             chHHHHHHHHHHhcCHHHHHHHHHHHHcC--CCC-CHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          582 SLPSAIINLVIQKDGIQQAREMYKRFLAL--PRP-GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       582 ~~~~~y~~~~~~~g~~~~Ar~iy~~al~~--~p~-~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      .....|++|+...++...||.+|++++..  ++. +..+|..++++|...|      +++.++++=.+-...+|
T Consensus       436 ~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG------dL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  436 EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG------DLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHhcc
Confidence            44557999999999999999999999875  333 4569999999999999      89999999888877777

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.88  E-value=2.9e-18  Score=204.18  Aligned_cols=439  Identities=12%  Similarity=-0.003  Sum_probs=318.5

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....+..++++.+..+|++...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|..+|++
T Consensus       446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~  524 (899)
T TIGR02917       446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI-QEGNPDDAIQRFEK  524 (899)
T ss_pred             CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence            3567788888999999999999988888887776 478899999999999999999988888875 67899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      ++...|.+..+|..++.+....+....+... +..+..   .+|...                              ...
T Consensus       525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~---~~~~~~------------------------------~~~  570 (899)
T TIGR02917       525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAW-LEKAAE---LNPQEI------------------------------EPA  570 (899)
T ss_pred             HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHH---hCccch------------------------------hHH
Confidence            9999998888888887766543322222111 111000   000000                              000


Q ss_pred             hhhhhhH-HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817          298 QKSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (676)
Q Consensus       298 ~~~~~~~-~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~  376 (676)
                      ......+ ..++++.|..++++++...|.+...|..+...+...   +..+.+...+++++...|+++..|..++..+..
T Consensus       571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  647 (899)
T TIGR02917       571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA---GDLNKAVSSFKKLLALQPDSALALLLLADAYAV  647 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            0111111 235678889999999888888877777766655432   356788888999998899988888888887754


Q ss_pred             ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHH
Q 005817          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE  455 (676)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al  455 (676)
                                   .+++++|..+|+++++..|+.. .|...+.....                  .|..+.|..+++.+.
T Consensus       648 -------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~  696 (899)
T TIGR02917       648 -------------MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA------------------AKRTESAKKIAKSLQ  696 (899)
T ss_pred             -------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHH
Confidence                         4678899999999998777643 55444444333                  366888999999998


Q ss_pred             HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817          456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (676)
Q Consensus       456 ~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~  535 (676)
                      ...|.++..+...+..+...|++++|...+++++ ...|++ ..+...+......|          +.+++.+.+++++.
T Consensus       697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g----------~~~~A~~~~~~~l~  764 (899)
T TIGR02917       697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL-KRAPSS-QNAIKLHRALLASG----------NTAEAVKTLEAWLK  764 (899)
T ss_pred             hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCc-hHHHHHHHHHHHCC----------CHHHHHHHHHHHHH
Confidence            8888888899889999999999999999999999 777877 56666666666655          46888888999988


Q ss_pred             hcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC
Q 005817          536 KVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP  613 (676)
Q Consensus       536 ~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~  613 (676)
                      ..|...  ..+......+...+  +.+...|++++.. .|..     +......+......|+ .+|...+++++...|.
T Consensus       765 ~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~-----~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~  835 (899)
T TIGR02917       765 THPNDA--VLRTALAELYLAQKDYDKAIKHYRTVVKK-APDN-----AVVLNNLAWLYLELKD-PRALEYAEKALKLAPN  835 (899)
T ss_pred             hCCCCH--HHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence            776542  33443333343322  4455566666542 3332     2222223333555677 8899999999998888


Q ss_pred             CHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCccc
Q 005817          614 GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLL  673 (676)
Q Consensus       614 ~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~  673 (676)
                      +..++..++.+....+      +.+.|..+|+++++..|.++.++..++..-...|+.+.
T Consensus       836 ~~~~~~~~~~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~  889 (899)
T TIGR02917       836 IPAILDTLGWLLVEKG------EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE  889 (899)
T ss_pred             CcHHHHHHHHHHHHcC------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Confidence            8888888888877777      89999999999999999888999999999988888754

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.87  E-value=6.7e-18  Score=201.09  Aligned_cols=416  Identities=13%  Similarity=0.032  Sum_probs=315.1

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....+...|++++...|++...|..++......| ...+...|++++..+|.+...|...+.... ..|+.+.|...|++
T Consensus       480 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~  558 (899)
T TIGR02917       480 DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL-RTGNEEEAVAWLEK  558 (899)
T ss_pred             CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence            3567899999999999999999999999988877 578999999999999999999999999886 68899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      ++..+|.+...|...+......+....+... +.....   ..|.          ++..                    +
T Consensus       559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~---~~~~----------~~~~--------------------~  604 (899)
T TIGR02917       559 AAELNPQEIEPALALAQYYLGKGQLKKALAI-LNEAAD---AAPD----------SPEA--------------------W  604 (899)
T ss_pred             HHHhCccchhHHHHHHHHHHHCCCHHHHHHH-HHHHHH---cCCC----------CHHH--------------------H
Confidence            9999999988888887765543332222211 111000   0000          0000                    1


Q ss_pred             hhhhhhH-HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817          298 QKSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (676)
Q Consensus       298 ~~~~~~~-~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~  376 (676)
                      ......+ ..++++.|...|+++++..|++...+..+..++...   +..+.+..++++++..+|++...|..++..+..
T Consensus       605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  681 (899)
T TIGR02917       605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM---KNYAKAITSLKRALELKPDNTEAQIGLAQLLLA  681 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            1111112 235789999999999999998877776665555433   357889999999999999999999999998865


Q ss_pred             ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHH
Q 005817          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE  455 (676)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al  455 (676)
                                   .++++.|..+++......|... .|.........                  .|+++.|...|++++
T Consensus       682 -------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~g~~~~A~~~~~~~~  730 (899)
T TIGR02917       682 -------------AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR------------------QKDYPAAIQAYRKAL  730 (899)
T ss_pred             -------------cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH------------------CCCHHHHHHHHHHHH
Confidence                         4779999999999988777544 44333322222                  367899999999999


Q ss_pred             HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817          456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (676)
Q Consensus       456 ~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~  535 (676)
                      ...|.+ ..+..++..+...|++++|...+++++ ...|++...+...+.+....|          +.+++.+.|++++.
T Consensus       731 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~~~~  798 (899)
T TIGR02917       731 KRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQK----------DYDKAIKHYRTVVK  798 (899)
T ss_pred             hhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCc----------CHHHHHHHHHHHHH
Confidence            998877 778889999999999999999999999 889999999999988888766          47899999999998


Q ss_pred             hcChhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC
Q 005817          536 KVSALESESLWLMALKFFMNQK-HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG  614 (676)
Q Consensus       536 ~~~~~~~~~lW~~~l~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~  614 (676)
                      ..|..  ..++......+...+ ..+...+++++. ..|+.     +.....++..+...|++++|..+|++++...|.+
T Consensus       799 ~~p~~--~~~~~~l~~~~~~~~~~~A~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  870 (899)
T TIGR02917       799 KAPDN--AVVLNNLAWLYLELKDPRALEYAEKALK-LAPNI-----PAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA  870 (899)
T ss_pred             hCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHh-hCCCC-----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            87653  233433222222222 234445555553 23333     3444456677888999999999999999998888


Q ss_pred             HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHh
Q 005817          615 LVLYQNCIELENNLASVGDKDSLVNARKLFESALA  649 (676)
Q Consensus       615 ~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~  649 (676)
                      ..++..++..-...|      +.+.|+++|++++.
T Consensus       871 ~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~  899 (899)
T TIGR02917       871 AAIRYHLALALLATG------RKAEARKELDKLLN  899 (899)
T ss_pred             hHHHHHHHHHHHHcC------CHHHHHHHHHHHhC
Confidence            888888888888888      88999999999873

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA []

Probab=99.85  E-value=2.6e-21  Score=154.07  Aligned_cols=83  Identities=59%  Similarity=0.921  Sum_probs=74.3

Q ss_pred             HHhhhHhHHHHHHcCCCCHHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhc
Q 005817           50 LERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKK  129 (676)
Q Consensus        50 ~e~~~~e~~~~~~~~~~~~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~  129 (676)
                      ||+|||||++|+++||||++||++|+++|+.|||+|+++++.+.||++||+||+++++|+++|+++++.           
T Consensus         1 LE~~vpele~l~~~~lFt~~EI~~IvkkR~~fEy~L~rr~~~~~Dfl~YI~yE~~L~~L~~~R~~~~~~-----------   69 (83)
T PF08640_consen    1 LERMVPELEDLERKGLFTKEEIREIVKKRRDFEYKLQRRGKKKSDFLRYIEYEMNLEKLRRKRRKRLGI-----------   69 (83)
T ss_pred             CchhhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------
Confidence            699999999999999999999999999999999999999999999999999999999999999877643           


Q ss_pred             cccccccchhHHHH
Q 005817          130 MKKSVSDFSGVARI  143 (676)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (676)
                      .+.+.+++++++||
T Consensus        70 ~~~~~~~~~i~~RI   83 (83)
T PF08640_consen   70 KKNSEIEYSIVRRI   83 (83)
T ss_pred             CccchhhhhHhccC
Confidence            14456777776653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=4.2e-17  Score=169.20  Aligned_cols=379  Identities=13%  Similarity=0.030  Sum_probs=277.7

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH
Q 005817          148 RLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE  226 (676)
Q Consensus       148 eral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~  226 (676)
                      ..|+++.|.-.+.+..|++..+..| ...+...|..++.+.|+..+.|+-.+.-.. .+|+.+.|-..|..||+.+|+..
T Consensus       106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~-~~~~~~~a~~~~~~alqlnP~l~  184 (966)
T KOG4626|consen  106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALV-TQGDLELAVQCFFEALQLNPDLY  184 (966)
T ss_pred             hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHH-hcCCCcccHHHHHHHHhcCcchh
Confidence            4688899999999999999998887 578999999999999999999999999886 68899999999999999999742


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHH
Q 005817          227 ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE  306 (676)
Q Consensus       227 ~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (676)
                      -+-.....+..                                                                   .+
T Consensus       185 ca~s~lgnLlk-------------------------------------------------------------------a~  197 (966)
T KOG4626|consen  185 CARSDLGNLLK-------------------------------------------------------------------AE  197 (966)
T ss_pred             hhhcchhHHHH-------------------------------------------------------------------hh
Confidence            22111111110                                                                   01


Q ss_pred             hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817          307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE  386 (676)
Q Consensus       307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~  386 (676)
                      |.+..|...|.+|++..|.-.-.|..   +...|..++.--.+.+.++++++..|.-..+++.++..+-+          
T Consensus       198 Grl~ea~~cYlkAi~~qp~fAiawsn---Lg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke----------  264 (966)
T KOG4626|consen  198 GRLEEAKACYLKAIETQPCFAIAWSN---LGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE----------  264 (966)
T ss_pred             cccchhHHHHHHHHhhCCceeeeehh---cchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH----------
Confidence            34567888899999888854334443   33445544445578888899999999999999888887744          


Q ss_pred             CcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817          387 DIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (676)
Q Consensus       387 ~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~  466 (676)
                         .+.+++|...|++|+...|...+-  |-+.-               +....+|.++-|+..|++|++..|.-++.+.
T Consensus       265 ---~~~~d~Avs~Y~rAl~lrpn~A~a--~gNla---------------~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~  324 (966)
T KOG4626|consen  265 ---ARIFDRAVSCYLRALNLRPNHAVA--HGNLA---------------CIYYEQGLLDLAIDTYKRALELQPNFPDAYN  324 (966)
T ss_pred             ---HhcchHHHHHHHHHHhcCCcchhh--ccceE---------------EEEeccccHHHHHHHHHHHHhcCCCchHHHh
Confidence               467889999999999877763311  10000               0112357889999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHH
Q 005817          467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLW  546 (676)
Q Consensus       467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW  546 (676)
                      ..+.-+...|+..+|...|.+|+ ..+|+.++-...........+          .++.+..+|.+|+.-.|.-.+  -.
T Consensus       325 NlanALkd~G~V~ea~~cYnkaL-~l~p~hadam~NLgni~~E~~----------~~e~A~~ly~~al~v~p~~aa--a~  391 (966)
T KOG4626|consen  325 NLANALKDKGSVTEAVDCYNKAL-RLCPNHADAMNNLGNIYREQG----------KIEEATRLYLKALEVFPEFAA--AH  391 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhc----------cchHHHHHHHHHHhhChhhhh--hh
Confidence            99999999999999999999999 889998888887777776655          378888899999986654211  11


Q ss_pred             HHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHH---HHHhcCHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005817          547 LMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL---VIQKDGIQQAREMYKRFLALPRPGLVLYQNC  621 (676)
Q Consensus       547 ~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~---~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~  621 (676)
                      ......+...+  +.+-.-|+.|+. +.        |..+.+|...   +...|+.+.|.+.|.+||...|.-...+...
T Consensus       392 nNLa~i~kqqgnl~~Ai~~Ykealr-I~--------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL  462 (966)
T KOG4626|consen  392 NNLASIYKQQGNLDDAIMCYKEALR-IK--------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL  462 (966)
T ss_pred             hhHHHHHHhcccHHHHHHHHHHHHh-cC--------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence            11112222222  122222444443 22        3444455443   5668899999999999999888888888888


Q ss_pred             HHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc
Q 005817          622 IELENNLASVGDKDSLVNARKLFESALATYDQNT  655 (676)
Q Consensus       622 i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~  655 (676)
                      +-+....|      ++..|.+-|+.|+...|+.+
T Consensus       463 asi~kDsG------ni~~AI~sY~~aLklkPDfp  490 (966)
T KOG4626|consen  463 ASIYKDSG------NIPEAIQSYRTALKLKPDFP  490 (966)
T ss_pred             HHHhhccC------CcHHHHHHHHHHHccCCCCc
Confidence            88888888      88999999999999888544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.79  E-value=3e-14  Score=172.91  Aligned_cols=528  Identities=10%  Similarity=-0.034  Sum_probs=260.7

Q ss_pred             cccchHHHHHHHHHhhhHhHHHHHHcCCCCHHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005817           38 KSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIG  117 (676)
Q Consensus        38 ~~~~ma~~v~~~~e~~~~e~~~~~~~~~~~~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~  117 (676)
                      -+.+|.+.+|.-+||    ..-...++=..        -.|..++..+...|.++..+..-+..-...+           
T Consensus        20 ~~~~~~~~~~~Ll~q----~~~~~~~~~~d--------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g-----------   76 (1157)
T PRK11447         20 LAQAAPTAQQQLLEQ----VRLGEATHRED--------LVRQSLYRLELIDPNNPDVIAARFRLLLRQG-----------   76 (1157)
T ss_pred             cccccCCHHHHHHHH----HHHHHhhCChH--------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCC-----------
Confidence            344666777775544    44444444222        2677777788888888777655444332211           


Q ss_pred             ccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHHHH----------------HHHHHHcc-CchHHHHH
Q 005817          118 RDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKY----------------MEFCRQRK-NGRMKKVL  180 (676)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y----------------~~~~~~~~-~~~~~~~~  180 (676)
                                           ....|...++++++..|++...|...                +..+...| .+.+..+|
T Consensus        77 ---------------------~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~  135 (1157)
T PRK11447         77 ---------------------DSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY  135 (1157)
T ss_pred             ---------------------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence                                 23456666666666666666655322                22333333 35666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 005817          181 AQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRD  260 (676)
Q Consensus       181 ~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~  260 (676)
                      ++++..+|.++.+=..|........|+.+.|+..|+++++.+|.+..++..++++....++...+... +..........
T Consensus       136 ~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~-l~~~~~~~~~~  214 (1157)
T PRK11447        136 DKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAV-LEQMAKSPAGR  214 (1157)
T ss_pred             HHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHH-HHHHhhCCCch
Confidence            66666666655433333222222345666677777777776676666666666655432221111111 11000000000


Q ss_pred             ccchhHHhhhhh------ccc---cccCC-CCCCCCCCC----CCC--------cchhh--hhhhhhHHHhhhHHHHHHH
Q 005817          261 HRDADEKRWINE------NKG---LFMPL-DGEVENTDG----SQP--------ENMES--QKSVDLFREQGLRVLQTIY  316 (676)
Q Consensus       261 ~~~~~~~~~~~~------~~~---~~~~~-~~~~~~~~~----~~~--------~~~~~--~~~~~~~~~~~~~~a~~iy  316 (676)
                        ......|...      .+.   .+..+ ......+..    ..+        ++...  ......+..++++.|...|
T Consensus       215 --~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l  292 (1157)
T PRK11447        215 --DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPEL  292 (1157)
T ss_pred             --HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHH
Confidence              0000000000      000   00000 000000000    000        00000  0011122346789999999


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh--hHHHH------------HHHhccccCCCC
Q 005817          317 SGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK--YWDWL------------ARLKMTDSVSKD  382 (676)
Q Consensus       317 ~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~--~w~~l------------a~~~~~~~~~~~  382 (676)
                      +++++..|++.+.+..+-.++...   +..+.+...++++++..|++..  .|..+            +...+.      
T Consensus       293 ~~aL~~~P~~~~a~~~Lg~~~~~~---g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~------  363 (1157)
T PRK11447        293 QQAVRANPKDSEALGALGQAYSQQ---GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK------  363 (1157)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH------
Confidence            999999999888877665555432   3578899999999999998753  23211            222222      


Q ss_pred             CCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc
Q 005817          383 GTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT  461 (676)
Q Consensus       383 ~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~  461 (676)
                             .+++++|+..|+++++..|... .+.........                  .|+++.|...|++++..+|.+
T Consensus       364 -------~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~------------------~g~~~eA~~~y~~aL~~~p~~  418 (1157)
T PRK11447        364 -------ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA------------------RKDYAAAERYYQQALRMDPGN  418 (1157)
T ss_pred             -------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCC
Confidence                   3567777777777777766543 22111111111                  244555555555555555554


Q ss_pred             HHHHHHHH------------------------------------------HHHHhcCCHHHHHHHHHHHhhccCCChHHH
Q 005817          462 EDIAHRYV------------------------------------------TLYLQLGKLDEARKLAAKLCSGKLSDSVQL  499 (676)
Q Consensus       462 ~~lw~~~~------------------------------------------~l~~~~~~~~~A~~l~~~al~~~~P~~~~l  499 (676)
                      ...+...+                                          ..+...|++++|+..+++++ +..|+++.+
T Consensus       419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~~~P~~~~~  497 (1157)
T PRK11447        419 TNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-ALDPGSVWL  497 (1157)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHH
Confidence            44332222                                          22233455666666666666 556666655


Q ss_pred             HHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh------HHHH------------
Q 005817          500 WLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK------HYFD------------  561 (676)
Q Consensus       500 W~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~------~~~~------------  561 (676)
                      +...+.++...+          +.+++...|++++...|....  .+..+.-++....      ..++            
T Consensus       498 ~~~LA~~~~~~G----------~~~~A~~~l~~al~~~P~~~~--~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~  565 (1157)
T PRK11447        498 TYRLAQDLRQAG----------QRSQADALMRRLAQQKPNDPE--QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ  565 (1157)
T ss_pred             HHHHHHHHHHcC----------CHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence            555555555444          245555555555544332210  1110000000000      0000            


Q ss_pred             ---------HH------------HHHHHHhh--hhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHH
Q 005817          562 ---------KL------------VEIALISV--AKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLY  618 (676)
Q Consensus       562 ---------~~------------~~~a~~~~--~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~  618 (676)
                               .+            ++.|+..+  .|..     +......+.+....|++++|...|++++...|.+...+
T Consensus       566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~-----~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~  640 (1157)
T PRK11447        566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS-----TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADAR  640 (1157)
T ss_pred             HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC-----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence                     00            11111111  1221     22223456667777888888888888887777777777


Q ss_pred             HHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCC
Q 005817          619 QNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSF  670 (676)
Q Consensus       619 ~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~  670 (676)
                      ...+.+-...+      +.+.|+++|+++++..|+++.++......-...|+
T Consensus       641 ~~la~~~~~~g------~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~  686 (1157)
T PRK11447        641 LGLIEVDIAQG------DLAAARAQLAKLPATANDSLNTQRRVALAWAALGD  686 (1157)
T ss_pred             HHHHHHHHHCC------CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC
Confidence            66666655555      56666666666666555555555554444444443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=99.79  E-value=5.8e-16  Score=155.45  Aligned_cols=444  Identities=15%  Similarity=0.125  Sum_probs=281.6

Q ss_pred             HHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHH
Q 005817           83 YRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWF  162 (676)
Q Consensus        83 ~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~  162 (676)
                      .+|+-+|.++..|..-|+|-...+                                .....+..|++...-||--...|.
T Consensus        33 erIkdNPtnI~S~fqLiq~~~tq~--------------------------------s~~~~re~yeq~~~pfp~~~~aw~   80 (660)
T COG5107          33 ERIKDNPTNILSYFQLIQYLETQE--------------------------------SMDAEREMYEQLSSPFPIMEHAWR   80 (660)
T ss_pred             HHhhcCchhHHHHHHHHHHHhhhh--------------------------------hHHHHHHHHHHhcCCCccccHHHH
Confidence            578889999999999999765432                                245567899999999999999999


Q ss_pred             HHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHH-HHHHHHHH-------HHHhCCCCHHHHHHHH
Q 005817          163 KYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT-AARALMQN-------GLRVCPTSEELWVEYL  233 (676)
Q Consensus       163 ~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~-~Ar~~~~r-------al~~~p~~~~lW~~y~  233 (676)
                      .|+.-+...+ +..+..+|.|||..-- +.+||..|+.+-...++.++ .+|..+-+       ..-+.|.+...|.+|.
T Consensus        81 ly~s~ELA~~df~svE~lf~rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~  159 (660)
T COG5107          81 LYMSGELARKDFRSVESLFGRCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYG  159 (660)
T ss_pred             HHhcchhhhhhHHHHHHHHHHHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHH
Confidence            9998776655 5778999999998654 38999999998754443222 23333333       3345578899999999


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (676)
Q Consensus       234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (676)
                      .|....-.        +                .+                            ++.      +..++..|
T Consensus       160 ~fle~~~~--------~----------------~k----------------------------wEe------Qqrid~iR  181 (660)
T COG5107         160 LFLEYIEE--------L----------------GK----------------------------WEE------QQRIDKIR  181 (660)
T ss_pred             HHHHhccc--------c----------------cc----------------------------HHH------HHHHHHHH
Confidence            98553200        0                01                            111      13678899


Q ss_pred             HHHHHHHhcCCCc-hhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHH---hccccCCCCCCCcCcc
Q 005817          314 TIYSGAVEALPSS-FNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARL---KMTDSVSKDGTSEDIV  389 (676)
Q Consensus       314 ~iy~~Al~~~p~~-~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~---~~~~~~~~~~~~~~~~  389 (676)
                      .+|.+|+...-++ ..+|..    |..|+...+...+++++-..      +|..  +.|+.   ++....  .|..+.. 
T Consensus       182 ~~Y~ral~tP~~nleklW~d----y~~fE~e~N~~TarKfvge~------sp~y--m~ar~~yqe~~nlt--~Gl~v~~-  246 (660)
T COG5107         182 NGYMRALQTPMGNLEKLWKD----YENFELELNKITARKFVGET------SPIY--MSARQRYQEIQNLT--RGLSVKN-  246 (660)
T ss_pred             HHHHHHHcCccccHHHHHHH----HHHHHHHHHHHHHHHHhccc------CHHH--HHHHHHHHHHHHHh--ccccccC-
Confidence            9999999986655 345544    46666432233444443221      1111  11111   111000  0000000 


Q ss_pred             hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~  469 (676)
                      .-...    .+.++-. . ...-|..+++++++....-..+           -...+.--+|+.++.-.|..+++|+.|.
T Consensus       247 ~~~~R----t~nK~~r-~-s~S~WlNwIkwE~en~l~L~~~-----------~~~qRi~y~~~q~~~y~~~~~evw~dys  309 (660)
T COG5107         247 PINLR----TANKAAR-T-SDSNWLNWIKWEMENGLKLGGR-----------PHEQRIHYIHNQILDYFYYAEEVWFDYS  309 (660)
T ss_pred             chhhh----hhccccc-c-ccchhhhHhhHhhcCCcccCCC-----------cHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            00000    1111111 0 1125999999988743211100           1123666789999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC-----------
Q 005817          470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS-----------  538 (676)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~-----------  538 (676)
                      .++...++-+.|++..++++ .-+|.   +-..+...+.-..          +-+.++..|+++++.+.           
T Consensus       310 ~Y~~~isd~q~al~tv~rg~-~~sps---L~~~lse~yel~n----------d~e~v~~~fdk~~q~L~r~ys~~~s~~~  375 (660)
T COG5107         310 EYLIGISDKQKALKTVERGI-EMSPS---LTMFLSEYYELVN----------DEEAVYGCFDKCTQDLKRKYSMGESESA  375 (660)
T ss_pred             HHHhhccHHHHHHHHHHhcc-cCCCc---hheeHHHHHhhcc----------cHHHHhhhHHHHHHHHHHHHhhhhhhhh
Confidence            99999999999999998888 55554   6666665554332          45667777777764310           


Q ss_pred             ------hhhh-----------HHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHH
Q 005817          539 ------ALES-----------ESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ  599 (676)
Q Consensus       539 ------~~~~-----------~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~  599 (676)
                            +...           .-.|..++++..+..  +.++++|.++.+.  +-.+  +..-+..+|+++. ..|+...
T Consensus       376 s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~--~~~~--h~vyi~~A~~E~~-~~~d~~t  450 (660)
T COG5107         376 SKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE--GIVG--HHVYIYCAFIEYY-ATGDRAT  450 (660)
T ss_pred             ccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc--CCCC--cceeeeHHHHHHH-hcCCcch
Confidence                  0000           113555555443322  4567777776642  1111  1123344566554 3688999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCC--chHHHHHHHHHhhcCCcccC
Q 005817          600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN--TSLWRDYYSTETKVSFSLLC  674 (676)
Q Consensus       600 Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~--~~lW~~y~~fE~~~G~~~~~  674 (676)
                      |-.||+-++.-.|+++.+-.+|..+-...+      +-++||++|+.++......  ..+|..|+++|.++|+...+
T Consensus       451 a~~ifelGl~~f~d~~~y~~kyl~fLi~in------de~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v  521 (660)
T COG5107         451 AYNIFELGLLKFPDSTLYKEKYLLFLIRIN------DEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNV  521 (660)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHhC------cHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHH
Confidence            999999999988999888888888777776      7799999999999876532  59999999999999997543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.78  E-value=2.5e-14  Score=173.57  Aligned_cols=452  Identities=11%  Similarity=0.021  Sum_probs=254.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHH------------------
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYA------------------  197 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~------------------  197 (676)
                      ...+...|++++..+|++..++..++.+....+ ...+...|++++...+..   ..+|...                  
T Consensus       163 ~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l  242 (1157)
T PRK11447        163 RPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYL  242 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHH
Confidence            456788999999999999999988888887665 355666666665433211   1222111                  


Q ss_pred             ---------------------------------HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005817          198 ---------------------------------AAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLK  244 (676)
Q Consensus       198 ---------------------------------a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~  244 (676)
                                                       +...+ ..|+++.|...|+++++.+|++..+|..........++...
T Consensus       243 ~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~-~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~e  321 (1157)
T PRK11447        243 QVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV-DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRAR  321 (1157)
T ss_pred             HHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence                                             11121 34677777777777777777777766666655443322222


Q ss_pred             HHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh---hhhh-hhHHHhhhHHHHHHHHHHH
Q 005817          245 ARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES---QKSV-DLFREQGLRVLQTIYSGAV  320 (676)
Q Consensus       245 ~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~a~~iy~~Al  320 (676)
                      +... +..+.+   .+|.......|..        +           +....+   .... ..+..++++.|...|++++
T Consensus       322 A~~~-l~~Al~---~~p~~~~~~~~~~--------l-----------l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al  378 (1157)
T PRK11447        322 AVAQ-FEKALA---LDPHSSNRDKWES--------L-----------LKVNRYWLLIQQGDAALKANNLAQAERLYQQAR  378 (1157)
T ss_pred             HHHH-HHHHHH---hCCCccchhHHHH--------H-----------HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            2111 110000   0000000000000        0           000000   0000 1112344555666666666


Q ss_pred             hcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHH
Q 005817          321 EALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVY  400 (676)
Q Consensus       321 ~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~y  400 (676)
                      +..|++...+..+-.++..-   +..+.+...++++++..|++..++..++..+..              +..++|...+
T Consensus       379 ~~~P~~~~a~~~Lg~~~~~~---g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~--------------~~~~~A~~~l  441 (1157)
T PRK11447        379 QVDNTDSYAVLGLGDVAMAR---KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ--------------QSPEKALAFI  441 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------------cCHHHHHHHH
Confidence            66555544444333333221   234556666666666666665555555554421              2234444444


Q ss_pred             HHHhhccCchh------H-HHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 005817          401 EEALKNVPSSM------I-FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL  473 (676)
Q Consensus       401 e~al~~~~~~~------l-w~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~  473 (676)
                      +......+...      + ...+...-. .              ....++.+.|+..|++++..+|.++.++...+.++.
T Consensus       442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~-~--------------~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~  506 (1157)
T PRK11447        442 ASLSASQRRSIDDIERSLQNDRLAQQAE-A--------------LENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR  506 (1157)
T ss_pred             HhCCHHHHHHHHHHHHHhhhhHHHHHHH-H--------------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            33211110000      0 000000000 0              012477899999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHH---------------------
Q 005817          474 QLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC---------------------  532 (676)
Q Consensus       474 ~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~---------------------  532 (676)
                      +.|++++|..++++++ ...|.++..+..++.+....+.          .+++...+++                     
T Consensus       507 ~~G~~~~A~~~l~~al-~~~P~~~~~~~a~al~l~~~~~----------~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~  575 (1157)
T PRK11447        507 QAGQRSQADALMRRLA-QQKPNDPEQVYAYGLYLSGSDR----------DRAALAHLNTLPRAQWNSNIQELAQRLQSDQ  575 (1157)
T ss_pred             HcCCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence            9999999999999999 8899998888777655443332          2222222221                     


Q ss_pred             ----------------HH---hhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHH
Q 005817          533 ----------------IL---TKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLV  591 (676)
Q Consensus       533 ----------------Al---~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~  591 (676)
                                      |+   ...|.+  ..++......+...+  +.+...|++++. ..|.+     .......+..+
T Consensus       576 ~l~~a~~l~~~G~~~eA~~~l~~~p~~--~~~~~~La~~~~~~g~~~~A~~~y~~al~-~~P~~-----~~a~~~la~~~  647 (1157)
T PRK11447        576 VLETANRLRDSGKEAEAEALLRQQPPS--TRIDLTLADWAQQRGDYAAARAAYQRVLT-REPGN-----ADARLGLIEVD  647 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHH
Confidence                            11   111211  223333333333322  344556666654 34543     23333566777


Q ss_pred             HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc------hHHHHHHHHH
Q 005817          592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT------SLWRDYYSTE  665 (676)
Q Consensus       592 ~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~------~lW~~y~~fE  665 (676)
                      ...|+.++|++.|++++...|.+...+.....+....+      +.+.|.++|++++...|+.+      .++.....+.
T Consensus       648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g------~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~  721 (1157)
T PRK11447        648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG------DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE  721 (1157)
T ss_pred             HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC------CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH
Confidence            78999999999999999888888887777776666677      89999999999999876433      4666667888


Q ss_pred             hhcCCcc
Q 005817          666 TKVSFSL  672 (676)
Q Consensus       666 ~~~G~~~  672 (676)
                      ...|+.+
T Consensus       722 ~~~G~~~  728 (1157)
T PRK11447        722 AQTGQPQ  728 (1157)
T ss_pred             HHcCCHH
Confidence            7777654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.77  E-value=2.4e-14  Score=163.03  Aligned_cols=423  Identities=10%  Similarity=-0.021  Sum_probs=236.3

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....|...|++++...|+ ...|...+....+.| +..+...+++++...|+++..|...+.... ..|+++.|...|..
T Consensus       142 ~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~-~lg~~~eA~~~~~~  219 (615)
T TIGR00990       142 DFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD-GLGKYADALLDLTA  219 (615)
T ss_pred             CHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence            467899999999999995 667777777666666 578999999999999999999999999885 78899999999988


Q ss_pred             HHHhCCCCHHHHHHHH-HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCC-CCCcch
Q 005817          218 GLRVCPTSEELWVEYL-RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG-SQPENM  295 (676)
Q Consensus       218 al~~~p~~~~lW~~y~-~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  295 (676)
                      ++...+.....-...+ +......  ...-...+.......   +............. ........+...+. +.....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~l~~~a--~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  293 (615)
T TIGR00990       220 SCIIDGFRNEQSAQAVERLLKKFA--ESKAKEILETKPENL---PSVTFVGNYLQSFR-PKPRPAGLEDSNELDEETGNG  293 (615)
T ss_pred             HHHhCCCccHHHHHHHHHHHHHHH--HHHHHHHHhcCCCCC---CCHHHHHHHHHHcc-CCcchhhhhcccccccccccc
Confidence            8777654322111111 1100000  000011111111000   00000000000000 00000000000000 000000


Q ss_pred             hhhhhhhhH---HHhhhHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHH
Q 005817          296 ESQKSVDLF---REQGLRVLQTIYSGAVEAL---PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW  369 (676)
Q Consensus       296 ~~~~~~~~~---~~~~~~~a~~iy~~Al~~~---p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~  369 (676)
                      .........   ..+.++.|...|+++++..   |.....+...-.++   ...+..+.+...+++++...|+....|..
T Consensus       294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~---~~~g~~~eA~~~~~kal~l~P~~~~~~~~  370 (615)
T TIGR00990       294 QLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK---CLKGKHLEALADLSKSIELDPRVTQSYIK  370 (615)
T ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            000000000   0134667777777777653   33322222221111   11235667777777777777777777777


Q ss_pred             HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHH
Q 005817          370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLL  448 (676)
Q Consensus       370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~  448 (676)
                      +|..+..             .+++++|...|+++++..|... .|.........                  .|+++.|+
T Consensus       371 la~~~~~-------------~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~------------------~g~~~~A~  419 (615)
T TIGR00990       371 RASMNLE-------------LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI------------------KGEFAQAG  419 (615)
T ss_pred             HHHHHHH-------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------cCCHHHHH
Confidence            7776654             3567777777777777666533 33322222211                  35577777


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHH
Q 005817          449 TVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE  528 (676)
Q Consensus       449 ~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~  528 (676)
                      ..|++++..+|.+...|...+..+.+.|++++|...+++++ +.+|+++.+|..+..+....|          +.+++.+
T Consensus       420 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g----------~~~~A~~  488 (615)
T TIGR00990       420 KDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK-KNFPEAPDVYNYYGELLLDQN----------KFDEAIE  488 (615)
T ss_pred             HHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcc----------CHHHHHH
Confidence            77777777777777777777777777777777777777777 677777777777776666554          3677777


Q ss_pred             HHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005817          529 LLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL  608 (676)
Q Consensus       529 ~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al  608 (676)
                      .|++|+...|....  .|...+.                               +....+.+....|++++|..+|++++
T Consensus       489 ~~~~Al~l~p~~~~--~~~~~~~-------------------------------l~~~a~~~~~~~~~~~eA~~~~~kAl  535 (615)
T TIGR00990       489 KFDTAIELEKETKP--MYMNVLP-------------------------------LINKALALFQWKQDFIEAENLCEKAL  535 (615)
T ss_pred             HHHHHHhcCCcccc--ccccHHH-------------------------------HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            77777765443211  1110000                               00000111112466777777777777


Q ss_pred             cCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC
Q 005817          609 ALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ  653 (676)
Q Consensus       609 ~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~  653 (676)
                      ...|.+...+...+.+....|      +++.|...|++|++..++
T Consensus       536 ~l~p~~~~a~~~la~~~~~~g------~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       536 IIDPECDIAVATMAQLLLQQG------DVDEALKLFERAAELART  574 (615)
T ss_pred             hcCCCcHHHHHHHHHHHHHcc------CHHHHHHHHHHHHHHhcc
Confidence            766666666666666666666      667777777777776554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.77  E-value=5e-17  Score=181.79  Aligned_cols=237  Identities=18%  Similarity=0.238  Sum_probs=190.9

Q ss_pred             HHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc-h-----hHHHHHHHHHHHHh
Q 005817          351 KILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS-S-----MIFDLYTKFLMDMI  424 (676)
Q Consensus       351 ~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~-~-----~lw~~y~~~~~~~~  424 (676)
                      .-+++++...|++.-.|+.+..+.++             .+.+++||.+.++||..++- +     .+|.+|++++..+ 
T Consensus      1445 eDferlvrssPNSSi~WI~YMaf~Le-------------lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y- 1510 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLE-------------LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY- 1510 (1710)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhh-------------hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-
Confidence            34667788888888888888887776             56788899999999888742 1     2888888887764 


Q ss_pred             cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI  504 (676)
Q Consensus       425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i  504 (676)
                                       |.-+.+.++|++|.+. +....++.....+|.+...+++|.++++..+ +++.....+|.+|+
T Consensus      1511 -----------------G~eesl~kVFeRAcqy-cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~-KKF~q~~~vW~~y~ 1571 (1710)
T KOG1070|consen 1511 -----------------GTEESLKKVFERACQY-CDAYTVHLKLLGIYEKSEKNDEADELLRLML-KKFGQTRKVWIMYA 1571 (1710)
T ss_pred             -----------------CcHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHhhcchhHHHHHHHHH-HHhcchhhHHHHHH
Confidence                             2246777888888876 5556788888888888888888888888888 77777888888888


Q ss_pred             HHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchH
Q 005817          505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLP  584 (676)
Q Consensus       505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  584 (676)
                      ++..+++          +.++++.++.+||+.+|..+-                                      ..+.
T Consensus      1572 ~fLl~~n----------e~~aa~~lL~rAL~~lPk~eH--------------------------------------v~~I 1603 (1710)
T KOG1070|consen 1572 DFLLRQN----------EAEAARELLKRALKSLPKQEH--------------------------------------VEFI 1603 (1710)
T ss_pred             HHHhccc----------HHHHHHHHHHHHHhhcchhhh--------------------------------------HHHH
Confidence            8888764          357788888888887774321                                      1223


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC---CCchHHHHH
Q 005817          585 SAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD---QNTSLWRDY  661 (676)
Q Consensus       585 ~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~---~~~~lW~~y  661 (676)
                      ..+++++++.|+-+++|.+|+-.+...|....+|.-||++|..++      +.+.+|.+||+++...-   +...++..|
T Consensus      1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~------~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG------DIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred             HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC------CHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence            367888999999999999999999999999999999999999999      89999999999999753   334899999


Q ss_pred             HHHHhhcCCcccC
Q 005817          662 YSTETKVSFSLLC  674 (676)
Q Consensus       662 ~~fE~~~G~~~~~  674 (676)
                      .+||.+|||...+
T Consensus      1678 LeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNV 1690 (1710)
T ss_pred             HHHHHhcCchhhH
Confidence            9999999998653

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=99.76  E-value=1.3e-14  Score=152.66  Aligned_cols=385  Identities=16%  Similarity=0.185  Sum_probs=248.8

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~  216 (676)
                      ..+..++.+|...|..+|-....|.+|++++.+.|. ..+.+||+|+++..|.+..+|+.|..+....+|+.+..|..|+
T Consensus        59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe  138 (577)
T KOG1258|consen   59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE  138 (577)
T ss_pred             hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            345888999999999999999999999999998874 6789999999999999999999999999888899999999999


Q ss_pred             HHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817          217 NGLRVCPT---SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE  293 (676)
Q Consensus       217 ral~~~p~---~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (676)
                      +|+..+..   |..+|..|+.+|....                                                     
T Consensus       139 ~A~~~vG~dF~S~~lWdkyie~en~qk-----------------------------------------------------  165 (577)
T KOG1258|consen  139 RAKSYVGLDFLSDPLWDKYIEFENGQK-----------------------------------------------------  165 (577)
T ss_pred             HHHHhcccchhccHHHHHHHHHHhccc-----------------------------------------------------
Confidence            99999985   5799999999984321                                                     


Q ss_pred             chhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccC------cHHHHHHHHHHHH----hcCCCC
Q 005817          294 NMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQ------SDDMHDKILSDMQ----RDFLVD  363 (676)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~------~~~~a~~il~~~~----~~~p~~  363 (676)
                                    +......||++.++.....   ...+++-|.++-...      ..+.+.++-....    ..+.++
T Consensus       166 --------------s~k~v~~iyeRileiP~~~---~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~  228 (577)
T KOG1258|consen  166 --------------SWKRVANIYERILEIPLHQ---LNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQE  228 (577)
T ss_pred             --------------cHHHHHHHHHHHHhhhhhH---hHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccC
Confidence                          2233344555554432111   111112222111000      0011110000000    000000


Q ss_pred             -hhhHHHHHHHhccccCCCCCCCc--C--------------cchhHHHHHHHHHHHHhhcc-----Cch----hHHHHHH
Q 005817          364 -PKYWDWLARLKMTDSVSKDGTSE--D--------------IVPSQMQKAIQVYEEALKNV-----PSS----MIFDLYT  417 (676)
Q Consensus       364 -~~~w~~la~~~~~~~~~~~~~~~--~--------------~~~~~~~~A~~~ye~al~~~-----~~~----~lw~~y~  417 (676)
                       .+.|-...    ...+...+.-.  .              .........+..||.+++.-     |-.    .-|..|+
T Consensus       229 ~~e~~~~~v----~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yL  304 (577)
T KOG1258|consen  229 PLEELEIGV----KDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYL  304 (577)
T ss_pred             hhHHHHHHH----hhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHh
Confidence             00000000    00000000000  0              00112345566777777642     111    2799999


Q ss_pred             HHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817          418 KFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV  497 (676)
Q Consensus       418 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~  497 (676)
                      .|.+.                  .|+.+++.-.|++|+......+++|+.|+.++...|+.+-|..++.+++.-.+|..+
T Consensus       305 df~i~------------------~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~  366 (577)
T KOG1258|consen  305 DFEIT------------------LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP  366 (577)
T ss_pred             hhhhh------------------cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence            99987                  367899999999999987888999999999999999999999999999955678889


Q ss_pred             HHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhH-HHHHHHHHHHHhhhHHHHHH--HHHHHHhhhhC
Q 005817          498 QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESE-SLWLMALKFFMNQKHYFDKL--VEIALISVAKD  574 (676)
Q Consensus       498 ~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~-~lW~~~l~~~~~~~~~~~~~--~~~a~~~~~~~  574 (676)
                      .+...++.+++..|          +...++.+++.....+|+..-+ -.|.   +.. .+...++..  .........  
T Consensus       367 ~i~L~~a~f~e~~~----------n~~~A~~~lq~i~~e~pg~v~~~l~~~---~~e-~r~~~~~~~~~~~~l~s~~~--  430 (577)
T KOG1258|consen  367 IIHLLEARFEESNG----------NFDDAKVILQRIESEYPGLVEVVLRKI---NWE-RRKGNLEDANYKNELYSSIY--  430 (577)
T ss_pred             HHHHHHHHHHHhhc----------cHHHHHHHHHHHHhhCCchhhhHHHHH---hHH-HHhcchhhhhHHHHHHHHhc--
Confidence            99999999998876          4778888888888877654322 1222   111 111111111  111111111  


Q ss_pred             CCCCCCcchHHHHHHH---HHH-hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccC
Q 005817          575 GGGESGFSLPSAIINL---VIQ-KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLAS  630 (676)
Q Consensus       575 ~~~~~~~~~~~~y~~~---~~~-~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~  630 (676)
                      .|.++.......|+++   ... .++.+.|+.++..++...|++..+|..++.|+...++
T Consensus       431 ~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  431 EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence            1222223333334444   222 5788999999999999999999999999999987653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.73  E-value=3.1e-14  Score=161.97  Aligned_cols=285  Identities=9%  Similarity=0.015  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...+..+++..+...|.+...+...+-.....| ...+...|++++..+|+++..|...+.... ..|+++.|...|+++
T Consensus        58 ~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~-~~g~~~~Ai~~l~~A  136 (656)
T PRK15174         58 TDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL-KSKQYATVADLAEQA  136 (656)
T ss_pred             cchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            456778888999999999888888886666666 467888999999999999999988888875 678899999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (676)
                      +...|++..+|...++.....                                                           
T Consensus       137 l~l~P~~~~a~~~la~~l~~~-----------------------------------------------------------  157 (656)
T PRK15174        137 WLAFSGNSQIFALHLRTLVLM-----------------------------------------------------------  157 (656)
T ss_pred             HHhCCCcHHHHHHHHHHHHHC-----------------------------------------------------------
Confidence            999998888777766553221                                                           


Q ss_pred             hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC-hhhHHHHHHHhccc
Q 005817          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD-PKYWDWLARLKMTD  377 (676)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~-~~~w~~la~~~~~~  377 (676)
                              ++++.|..+|++++...|++...+..+.. +.   ..+..+.+..+++.++..+|.+ ...+..++..+.. 
T Consensus       158 --------g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~---~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~-  224 (656)
T PRK15174        158 --------DKELQAISLARTQAQEVPPRGDMIATCLS-FL---NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA-  224 (656)
T ss_pred             --------CChHHHHHHHHHHHHhCCCCHHHHHHHHH-HH---HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH-
Confidence                    24466777888887777777665543321 11   1235667777888887777644 3333333444333 


Q ss_pred             cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHH----HHHHHHH
Q 005817          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS----HLLTVYE  452 (676)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~a~~iye  452 (676)
                                  .++++.|...|++++...|... .+..+......                  .|..+    .|...|+
T Consensus       225 ------------~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~------------------~G~~~eA~~~A~~~~~  274 (656)
T PRK15174        225 ------------VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ------------------SGRSREAKLQAAEHWR  274 (656)
T ss_pred             ------------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------------------cCCchhhHHHHHHHHH
Confidence                        4677888888888887766543 33333322222                  12233    4788888


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHH
Q 005817          453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC  532 (676)
Q Consensus       453 ~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~  532 (676)
                      +++..+|.++..+..++.++...|++++|...+++++ ...|+++.++..++......|.          .+++.+.|++
T Consensus       275 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al-~l~P~~~~a~~~La~~l~~~G~----------~~eA~~~l~~  343 (656)
T PRK15174        275 HALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL-ATHPDLPYVRAMYARALRQVGQ----------YTAASDEFVQ  343 (656)
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHH
Confidence            8888888888888888888888888888888888888 7788888888887777766653          6777777777


Q ss_pred             HHhhcC
Q 005817          533 ILTKVS  538 (676)
Q Consensus       533 Al~~~~  538 (676)
                      ++...|
T Consensus       344 al~~~P  349 (656)
T PRK15174        344 LAREKG  349 (656)
T ss_pred             HHHhCc
Confidence            766544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=8.8e-15  Score=152.17  Aligned_cols=362  Identities=13%  Similarity=0.062  Sum_probs=253.9

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~  216 (676)
                      +...++..+|+.|+...|..++.|+..+.-+...| ...+...|..||+++|...-.--....+. ...|.+..|...|.
T Consensus       130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl-ka~Grl~ea~~cYl  208 (966)
T KOG4626|consen  130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL-KAEGRLEEAKACYL  208 (966)
T ss_pred             chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH-HhhcccchhHHHHH
Confidence            34678899999999999999999999998887776 46789999999999998665555555555 35789999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817          217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME  296 (676)
Q Consensus       217 ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (676)
                      +|++..|.-.-+|..+.-.-..                                                          
T Consensus       209 kAi~~qp~fAiawsnLg~~f~~----------------------------------------------------------  230 (966)
T KOG4626|consen  209 KAIETQPCFAIAWSNLGCVFNA----------------------------------------------------------  230 (966)
T ss_pred             HHHhhCCceeeeehhcchHHhh----------------------------------------------------------
Confidence            9999999765566555432211                                                          


Q ss_pred             hhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817          297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (676)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~  376 (676)
                               .|++..|..-|++|++..|.-.+.+..+-..|..   ...++.+..-|.+++..-|.+..++-.+|-.|.+
T Consensus       231 ---------~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke---~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye  298 (966)
T KOG4626|consen  231 ---------QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE---ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE  298 (966)
T ss_pred             ---------cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH---HhcchHHHHHHHHHHhcCCcchhhccceEEEEec
Confidence                     1345567788888888877655555544444432   2345677788888888888888877777777766


Q ss_pred             ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHH
Q 005817          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA  456 (676)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~  456 (676)
                                   +|.++.|+..|++||...|.-.  .+|-++-....               ..|.+.+|...|.+|+.
T Consensus       299 -------------qG~ldlAI~~Ykral~~~P~F~--~Ay~NlanALk---------------d~G~V~ea~~cYnkaL~  348 (966)
T KOG4626|consen  299 -------------QGLLDLAIDTYKRALELQPNFP--DAYNNLANALK---------------DKGSVTEAVDCYNKALR  348 (966)
T ss_pred             -------------cccHHHHHHHHHHHHhcCCCch--HHHhHHHHHHH---------------hccchHHHHHHHHHHHH
Confidence                         5778888888988888777522  34433332210               13678888888888888


Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       457 ~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      .+|..++.-...+..+.+.|.+++|..+|.+++ ..+|+........+.++.++|          +++++...|+.||+.
T Consensus       349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al-~v~p~~aaa~nNLa~i~kqqg----------nl~~Ai~~YkealrI  417 (966)
T KOG4626|consen  349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL-EVFPEFAAAHNNLASIYKQQG----------NLDDAIMCYKEALRI  417 (966)
T ss_pred             hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH-hhChhhhhhhhhHHHHHHhcc----------cHHHHHHHHHHHHhc
Confidence            888888888888888888888888888888888 888888877877777777766          377888888888875


Q ss_pred             cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC
Q 005817          537 VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG  614 (676)
Q Consensus       537 ~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~  614 (676)
                      -|.- + .-...+...+...+  ..+..-+++|+. ++|..     .+-....+......|++..|.+-|+.|+.+.|..
T Consensus       418 ~P~f-A-da~~NmGnt~ke~g~v~~A~q~y~rAI~-~nPt~-----AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  418 KPTF-A-DALSNMGNTYKEMGDVSAAIQCYTRAIQ-INPTF-----AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             CchH-H-HHHHhcchHHHHhhhHHHHHHHHHHHHh-cCcHH-----HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence            5432 1 11111111222111  122334555554 23322     1111223444566899999999999999998887


Q ss_pred             HHHHH
Q 005817          615 LVLYQ  619 (676)
Q Consensus       615 ~~l~~  619 (676)
                      +..+.
T Consensus       490 pdA~c  494 (966)
T KOG4626|consen  490 PDAYC  494 (966)
T ss_pred             chhhh
Confidence            76443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.72  E-value=1.1e-15  Score=171.15  Aligned_cols=233  Identities=18%  Similarity=0.286  Sum_probs=195.4

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005817          177 KKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC-PTS----EELWVEYLRMELTYLNKLKARKVALG  251 (676)
Q Consensus       177 ~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~-p~~----~~lW~~y~~~e~~~~~~~~~r~~~l~  251 (676)
                      ..=|+|.+..+|++.-+|+.|+.|.+ +.++++.||.+++|||... +..    ..+|.+|+++|..++.          
T Consensus      1444 aeDferlvrssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~---------- 1512 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT---------- 1512 (1710)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc----------
Confidence            45689999999999999999999998 5679999999999999765 432    4699999999987631          


Q ss_pred             cccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHH
Q 005817          252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ  331 (676)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~  331 (676)
                                                                               -+....||++|.+.+. ....+.
T Consensus      1513 ---------------------------------------------------------eesl~kVFeRAcqycd-~~~V~~ 1534 (1710)
T KOG1070|consen 1513 ---------------------------------------------------------EESLKKVFERACQYCD-AYTVHL 1534 (1710)
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHHhcc-hHHHHH
Confidence                                                                     1345788999988763 346778


Q ss_pred             HHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh
Q 005817          332 RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM  411 (676)
Q Consensus       332 ~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~  411 (676)
                      .++.+|..++   ....|.++++.+++.|.+....|..++...+.             +++-+.|+.++++||+.+|...
T Consensus      1535 ~L~~iy~k~e---k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-------------~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1535 KLLGIYEKSE---KNDEADELLRLMLKKFGQTRKVWIMYADFLLR-------------QNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             HHHHHHHHhh---cchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-------------ccHHHHHHHHHHHHHhhcchhh
Confidence            8888998876   45789999999999999889999999999876             3567889999999999999743


Q ss_pred             ---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005817          412 ---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKL  488 (676)
Q Consensus       412 ---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~a  488 (676)
                         +-..+++++-+                  .|+.++.|.+|+-.+...|.-.++|.-|++++.+.|+.+.+|.+|+++
T Consensus      1599 Hv~~IskfAqLEFk------------------~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFK------------------YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred             hHHHHHHHHHHHhh------------------cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence               55566665554                  366899999999999999999999999999999999999999999999


Q ss_pred             hhccCCC--hHHHHHHHHHHHHHhcc
Q 005817          489 CSGKLSD--SVQLWLLRISVEIRCVT  512 (676)
Q Consensus       489 l~~~~P~--~~~lW~~~i~l~~~~~~  512 (676)
                      +...++.  ...++.+|++++.+.|+
T Consensus      1661 i~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred             HhcCCChhHhHHHHHHHHHHHHhcCc
Confidence            9555553  56788899999998875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.72  E-value=1.8e-13  Score=158.95  Aligned_cols=405  Identities=9%  Similarity=-0.010  Sum_probs=277.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|..+|+++....|.+...|...+......+ ...+..+|++++...|.++.+|...+.... ..|+.+.|...++++
T Consensus        31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~  109 (765)
T PRK10049         31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQL  109 (765)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence            456778999999888999999999999988887 578999999999999999999999998886 688999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (676)
                      +...|++.. |..++.+....                                                           
T Consensus       110 l~~~P~~~~-~~~la~~l~~~-----------------------------------------------------------  129 (765)
T PRK10049        110 VSGAPDKAN-LLALAYVYKRA-----------------------------------------------------------  129 (765)
T ss_pred             HHhCCCCHH-HHHHHHHHHHC-----------------------------------------------------------
Confidence            999999888 77765543321                                                           


Q ss_pred             hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh-----hHHHHHHH
Q 005817          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK-----YWDWLARL  373 (676)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~-----~w~~la~~  373 (676)
                              ++.+.|...|+++++..|++.+++..+..++..-   ...+.+...++++.. .|+...     .....++.
T Consensus       130 --------g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~---~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~  197 (765)
T PRK10049        130 --------GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN---RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRL  197 (765)
T ss_pred             --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence                    2457789999999999999988887765554432   234556667766554 444211     11111222


Q ss_pred             hccccCCCCCCCcCcchhHH---HHHHHHHHHHhhccCchh-HHHHHHHHHH---HHhcCccccccCCCCChhhhhhHHH
Q 005817          374 KMTDSVSKDGTSEDIVPSQM---QKAIQVYEEALKNVPSSM-IFDLYTKFLM---DMIAPKKEETRDSELPSHVEHYISH  446 (676)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~---~~A~~~ye~al~~~~~~~-lw~~y~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~  446 (676)
                      .+...        ....+++   ++|++.|+..++..|... ....+.....   ..+.              ..+..+.
T Consensus       198 ~~~~~--------~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll--------------~~g~~~e  255 (765)
T PRK10049        198 SFMPT--------RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL--------------ARDRYKD  255 (765)
T ss_pred             hcccc--------cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH--------------HhhhHHH
Confidence            21100        0012334   789999999986543211 1111111111   0000              1366899


Q ss_pred             HHHHHHHHHHcCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh----HHHHHHHHHHHHHhccccCCCCC
Q 005817          447 LLTVYEKAEAMGC---LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS----VQLWLLRISVEIRCVTRNSFSPS  519 (676)
Q Consensus       447 a~~iye~al~~~p---~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~----~~lW~~~i~l~~~~~~~~~~~p~  519 (676)
                      |+..|++++..++   .....|  .+..+...|++++|+.+|++++ ...|.+    ...+..+.......+        
T Consensus       256 A~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l-~~~p~~~~~~~~~~~~L~~a~~~~g--------  324 (765)
T PRK10049        256 VISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELF-YHPETIADLSDEELADLFYSLLESE--------  324 (765)
T ss_pred             HHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHh-hcCCCCCCCChHHHHHHHHHHHhcc--------
Confidence            9999999998754   334455  4788899999999999999998 666654    344555444444444        


Q ss_pred             hhchHHHHHHHHHHHhhcChh-------------hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchH
Q 005817          520 KADILSIFELLKCILTKVSAL-------------ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLP  584 (676)
Q Consensus       520 ~~~~~~~~~~f~~Al~~~~~~-------------~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~  584 (676)
                        +.+++...+.++....|..             ............+...+  +.+..+++.++. ..|..     ..+.
T Consensus       325 --~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-~~P~n-----~~l~  396 (765)
T PRK10049        325 --NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-NAPGN-----QGLR  396 (765)
T ss_pred             --cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHH
Confidence              4788888889888765421             11122222223333222  445566666654 34443     3444


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005817          585 SAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST  664 (676)
Q Consensus       585 ~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~f  664 (676)
                      ...+..+...|+.++|.+.+++++...|.+..++...+......+      +++.|.++++.+++..|+++.+-----..
T Consensus       397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~------~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ------EWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            456777778999999999999999999999998888888777777      89999999999999999876544333333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.71  E-value=4.7e-13  Score=152.46  Aligned_cols=412  Identities=10%  Similarity=-0.042  Sum_probs=259.1

Q ss_pred             HHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005817          165 MEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL  243 (676)
Q Consensus       165 ~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~  243 (676)
                      .+...+.| +..+...|++++...|+ +.+|...+.... ..|+++.|...+++++...|++..+|..........++..
T Consensus       134 G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~  211 (615)
T TIGR00990       134 GNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHN-ALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA  211 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence            33333444 57899999999999996 788888887775 6789999999999999999999998888777655432211


Q ss_pred             HHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC
Q 005817          244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL  323 (676)
Q Consensus       244 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~  323 (676)
                      .+...+ ....                ..     ..+.            ..   .....+...-...+...+..+++..
T Consensus       212 eA~~~~-~~~~----------------~~-----~~~~------------~~---~~~~~~~~~l~~~a~~~~~~~l~~~  254 (615)
T TIGR00990       212 DALLDL-TASC----------------II-----DGFR------------NE---QSAQAVERLLKKFAESKAKEILETK  254 (615)
T ss_pred             HHHHHH-HHHH----------------Hh-----CCCc------------cH---HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            111100 0000                00     0000            00   0000000000122334444455555


Q ss_pred             CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHH
Q 005817          324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEA  403 (676)
Q Consensus       324 p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~a  403 (676)
                      |.+...+..+-.++..+..    ......+.......|.....+..++......          ...+.+++|...|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~----------~~~~~y~~A~~~~~~a  320 (615)
T TIGR00990       255 PENLPSVTFVGNYLQSFRP----KPRPAGLEDSNELDEETGNGQLQLGLKSPES----------KADESYEEAARAFEKA  320 (615)
T ss_pred             CCCCCCHHHHHHHHHHccC----CcchhhhhcccccccccccchHHHHHHHHHh----------hhhhhHHHHHHHHHHH
Confidence            5443333222222222211    1111222333334444444444443332210          0135788999999999


Q ss_pred             hhcc---Cchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH
Q 005817          404 LKNV---PSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLD  479 (676)
Q Consensus       404 l~~~---~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~  479 (676)
                      +...   |... .|.....+...                  .|+++.|+..|++++..+|.....|+..+..+...|+++
T Consensus       321 l~~~~~~~~~a~a~~~lg~~~~~------------------~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~  382 (615)
T TIGR00990       321 LDLGKLGEKEAIALNLRGTFKCL------------------KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD  382 (615)
T ss_pred             HhcCCCChhhHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence            9753   2211 22221122111                  477899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--
Q 005817          480 EARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--  557 (676)
Q Consensus       480 ~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--  557 (676)
                      +|...+++++ ...|+++.+|..++.+....|          +.+++...|++++...|..  ...|......+...+  
T Consensus       383 eA~~~~~~al-~~~p~~~~~~~~lg~~~~~~g----------~~~~A~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~  449 (615)
T TIGR00990       383 KAEEDFDKAL-KLNSEDPDIYYHRAQLHFIKG----------EFAQAGKDYQKSIDLDPDF--IFSHIQLGVTQYKEGSI  449 (615)
T ss_pred             HHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHcCccC--HHHHHHHHHHHHHCCCH
Confidence            9999999999 889999999999999887766          4899999999999877653  223443222222222  


Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHhhccC
Q 005817          558 HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVL-------YQNCIELENNLAS  630 (676)
Q Consensus       558 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l-------~~~~i~lE~~~~~  630 (676)
                      +.+...++.++. ..|..     +.....++..+...|++++|...|++++...|.....       +...+.+....+ 
T Consensus       450 ~eA~~~~~~al~-~~P~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~-  522 (615)
T TIGR00990       450 ASSMATFRRCKK-NFPEA-----PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ-  522 (615)
T ss_pred             HHHHHHHHHHHH-hCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-
Confidence            445556666664 33443     3344356777888999999999999999887654222       222222222335 


Q ss_pred             CCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcc
Q 005817          631 VGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSL  672 (676)
Q Consensus       631 ~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~  672 (676)
                           +++.|..+|++|+...|++...|...++.-...|+.+
T Consensus       523 -----~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~  559 (615)
T TIGR00990       523 -----DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD  559 (615)
T ss_pred             -----hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence                 8899999999999999988888888888888877754

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.71  E-value=1e-13  Score=157.77  Aligned_cols=343  Identities=10%  Similarity=-0.006  Sum_probs=256.3

Q ss_pred             Hcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005817          170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV  248 (676)
Q Consensus       170 ~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~  248 (676)
                      ..| ...+..+++..+..+|.++..+...+.... ..|+++.|...|++++...|++...|...+......         
T Consensus        54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l-~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~---------  123 (656)
T PRK15174         54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPL-ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS---------  123 (656)
T ss_pred             hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHh-hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---------
Confidence            335 578999999999999999999999998776 689999999999999999999998886665443221         


Q ss_pred             HhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh
Q 005817          249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN  328 (676)
Q Consensus       249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~  328 (676)
                                                                                ++++.|...|+++++..|++..
T Consensus       124 ----------------------------------------------------------g~~~~Ai~~l~~Al~l~P~~~~  145 (656)
T PRK15174        124 ----------------------------------------------------------KQYATVADLAEQAWLAFSGNSQ  145 (656)
T ss_pred             ----------------------------------------------------------CCHHHHHHHHHHHHHhCCCcHH
Confidence                                                                      2567899999999999999988


Q ss_pred             HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817          329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP  408 (676)
Q Consensus       329 ~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~  408 (676)
                      .+..+..++...   +..+.+...+.+++...|+++..+..++.+ +.             .+++++|...|+++++..|
T Consensus       146 a~~~la~~l~~~---g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l-~~-------------~g~~~eA~~~~~~~l~~~~  208 (656)
T PRK15174        146 IFALHLRTLVLM---DKELQAISLARTQAQEVPPRGDMIATCLSF-LN-------------KSRLPEDHDLARALLPFFA  208 (656)
T ss_pred             HHHHHHHHHHHC---CChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH-------------cCCHHHHHHHHHHHHhcCC
Confidence            888776665443   356788999999999999998887665443 22             4789999999999988765


Q ss_pred             ch-h-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH----HH
Q 005817          409 SS-M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE----AR  482 (676)
Q Consensus       409 ~~-~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~----A~  482 (676)
                      .. . .+.........                  .|..+.|...|++++..+|.++..+..++..+...|++++    |.
T Consensus       209 ~~~~~~~~~l~~~l~~------------------~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~  270 (656)
T PRK15174        209 LERQESAGLAVDTLCA------------------VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAA  270 (656)
T ss_pred             CcchhHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence            32 2 11111111111                  3678999999999999999999999999999999999985    89


Q ss_pred             HHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHH
Q 005817          483 KLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYF  560 (676)
Q Consensus       483 ~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~  560 (676)
                      ..+++++ ...|++...|..++.+....|.          .+++...|++++..-|..  ..++..+...+...+  +.+
T Consensus       271 ~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~----------~~eA~~~l~~al~l~P~~--~~a~~~La~~l~~~G~~~eA  337 (656)
T PRK15174        271 EHWRHAL-QFNSDNVRIVTLYADALIRTGQ----------NEKAIPLLQQSLATHPDL--PYVRAMYARALRQVGQYTAA  337 (656)
T ss_pred             HHHHHHH-hhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHH
Confidence            9999999 8999999999999998888764          789999999999876643  234443333333332  334


Q ss_pred             HHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHH
Q 005817          561 DKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNA  640 (676)
Q Consensus       561 ~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~a  640 (676)
                      ...++.++. ..|..     ..+....+..+...|+.++|...|++++...|....            .      .++.+
T Consensus       338 ~~~l~~al~-~~P~~-----~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~------------~------~~~ea  393 (656)
T PRK15174        338 SDEFVQLAR-EKGVT-----SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP------------Q------SFEEG  393 (656)
T ss_pred             HHHHHHHHH-hCccc-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch------------h------hHHHH
Confidence            444554443 23332     223322345577899999999999999988776541            1      45566


Q ss_pred             HHHHHHHHhhCC
Q 005817          641 RKLFESALATYD  652 (676)
Q Consensus       641 R~lye~al~~~~  652 (676)
                      +.-|..++...+
T Consensus       394 ~~~~~~~~~~~~  405 (656)
T PRK15174        394 LLALDGQISAVN  405 (656)
T ss_pred             HHHHHHHHHhcC
Confidence            677777777655

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=99.70  E-value=2.3e-14  Score=154.29  Aligned_cols=423  Identities=13%  Similarity=0.139  Sum_probs=271.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHhC
Q 005817          146 IYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD--HNLNVTAARALMQNGLRVC  222 (676)
Q Consensus       146 iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~--~~~~~~~Ar~~~~ral~~~  222 (676)
                      .++.++  .+.++.....|+-++.+.| ..+++..-..+..+.|.+|.+|+.++.-+..  ..++...+-..|++||.-.
T Consensus       103 ~ee~ai--~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy  180 (881)
T KOG0128|consen  103 EEELAI--NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY  180 (881)
T ss_pred             HHHhcc--cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc
Confidence            344444  4455555555566666666 4677777777888899999999999986653  2367888999999999643


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhh
Q 005817          223 PTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVD  302 (676)
Q Consensus       223 p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (676)
                       .+..+|.+|+.+-...++.          +      .+                                         
T Consensus       181 -~~v~iw~e~~~y~~~~~~~----------~------~~-----------------------------------------  202 (881)
T KOG0128|consen  181 -NSVPIWEEVVNYLVGFGNV----------A------KK-----------------------------------------  202 (881)
T ss_pred             -ccchHHHHHHHHHHhcccc----------c------cc-----------------------------------------
Confidence             4589999999987664221          0      00                                         


Q ss_pred             hHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCc-HHHHHHHHHHHHh--cCCCChh--hHHHHHHH--hc
Q 005817          303 LFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQS-DDMHDKILSDMQR--DFLVDPK--YWDWLARL--KM  375 (676)
Q Consensus       303 ~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~-~~~a~~il~~~~~--~~p~~~~--~w~~la~~--~~  375 (676)
                         ..+++..|.+|.+|+........-...++.+|..|+..-. ....++++.--..  ..|-+..  .|.+.-..  +.
T Consensus       203 ---~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~  279 (881)
T KOG0128|consen  203 ---SEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHV  279 (881)
T ss_pred             ---cccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcch
Confidence               0145677889999998764443333444556666653211 1112223222211  2232211  12111110  10


Q ss_pred             cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHH
Q 005817          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA  454 (676)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~a  454 (676)
                      ..   ....+......+..+-+..|++.++..+... .|..|++|+..                  .|...+...+++++
T Consensus       280 ~~---~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~------------------~G~p~ri~l~~eR~  338 (881)
T KOG0128|consen  280 YD---VETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKK------------------SGDPVRIQLIEERA  338 (881)
T ss_pred             HH---HHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh------------------cCCchHHHHHHHHH
Confidence            00   0000001112233444556666666655544 89999999986                  25577888899999


Q ss_pred             HHcCCCcHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHH
Q 005817          455 EAMGCLTEDIAHRYVTLYL-QLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI  533 (676)
Q Consensus       455 l~~~p~~~~lw~~~~~l~~-~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~A  533 (676)
                      +...+.+++.|+.|..++. ..+-.+.+..++-+++ +.||....+|.++.-...+...         +...+...+.++
T Consensus       339 ~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~-R~cp~tgdL~~rallAleR~re---------~~~vI~~~l~~~  408 (881)
T KOG0128|consen  339 VAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAV-RSCPWTGDLWKRALLALERNRE---------EITVIVQNLEKD  408 (881)
T ss_pred             HHhccccHHHHhhhhhhcccccccccccccccchhh-cCCchHHHHHHHHHHHHHhcCc---------chhhHHHHHHHH
Confidence            9999999999999988765 3344566778899999 9999999999999855555543         467777888888


Q ss_pred             HhhcChhhhHHHHHHHHHHHHhhh--------HHHHHHHHHHHHhhhhCCCC--CCCcchHHHHHHHHHH-hcCHHHHHH
Q 005817          534 LTKVSALESESLWLMALKFFMNQK--------HYFDKLVEIALISVAKDGGG--ESGFSLPSAIINLVIQ-KDGIQQARE  602 (676)
Q Consensus       534 l~~~~~~~~~~lW~~~l~~~~~~~--------~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~y~~~~~~-~g~~~~Ar~  602 (676)
                      +...-     .+...++-++..+.        ..++.+|+.|...+.+..+.  .....+.+.++.+++. .++.+.||.
T Consensus       409 ls~~~-----~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~  483 (881)
T KOG0128|consen  409 LSMTV-----ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKARE  483 (881)
T ss_pred             HHHHH-----HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhH
Confidence            86421     12332322222211        34567777776655444322  0122333456666655 678999999


Q ss_pred             HHHHHHcCCCCCHH-HHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC--CC-chHHHHHHHHHhhcCCccc
Q 005817          603 MYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QN-TSLWRDYYSTETKVSFSLL  673 (676)
Q Consensus       603 iy~~al~~~p~~~~-l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~--~~-~~lW~~y~~fE~~~G~~~~  673 (676)
                      |+...+.-+..+.. .|..++.||...+      +...+|.++.+|.....  ++ ..+...|..||+.+|+.+.
T Consensus       484 iWn~imty~~~~iag~Wle~~~lE~~~g------~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~  552 (881)
T KOG0128|consen  484 IWNFIMTYGGGSIAGKWLEAINLEREYG------DGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLES  552 (881)
T ss_pred             hhhccccCCcchHHHHHHHHHhHHHHhC------CchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHH
Confidence            99998877767777 9999999999988      88999999999988644  22 3899999999999999764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.66  E-value=2.1e-12  Score=150.12  Aligned_cols=405  Identities=9%  Similarity=-0.039  Sum_probs=274.3

Q ss_pred             HhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005817          152 MRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV  230 (676)
Q Consensus       152 ~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~  230 (676)
                      +..|-+...--.|+....-.| ...+..++.++....|.....+...+.... ..|++..|..+|++++...|.++.+|.
T Consensus         9 ~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~   87 (765)
T PRK10049          9 LKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQR   87 (765)
T ss_pred             hccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            345556666666666666556 467889999999999999999999999886 688999999999999999999988887


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhH
Q 005817          231 EYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLR  310 (676)
Q Consensus       231 ~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (676)
                      ..+.+....                                                                   ++++
T Consensus        88 ~la~~l~~~-------------------------------------------------------------------g~~~  100 (765)
T PRK10049         88 GLILTLADA-------------------------------------------------------------------GQYD  100 (765)
T ss_pred             HHHHHHHHC-------------------------------------------------------------------CCHH
Confidence            555433221                                                                   2557


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcch
Q 005817          311 VLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVP  390 (676)
Q Consensus       311 ~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~  390 (676)
                      .|...++++++..|++.. +..+..++...   +..+.+...++++++..|+++.++..++.....             .
T Consensus       101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~---g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~-------------~  163 (765)
T PRK10049        101 EALVKAKQLVSGAPDKAN-LLALAYVYKRA---GRHWDELRAMTQALPRAPQTQQYPTEYVQALRN-------------N  163 (765)
T ss_pred             HHHHHHHHHHHhCCCCHH-HHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------C
Confidence            889999999999999988 66654444332   457889999999999999999999988887654             3


Q ss_pred             hHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhh---HHHHHHHHHHHHHcCCCcHHH
Q 005817          391 SQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY---ISHLLTVYEKAEAMGCLTEDI  464 (676)
Q Consensus       391 ~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~a~~iye~al~~~p~~~~l  464 (676)
                      +..+.|...++++.+ .|...   .+........-.+....          ...+.   .++|+..|+.++...|.+|+.
T Consensus       164 ~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~----------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~  232 (765)
T PRK10049        164 RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR----------SEKERYAIADRALAQYDALEALWHDNPDA  232 (765)
T ss_pred             CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc----------ChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence            567788888887775 44321   11111111110000000          00122   378899999998764433322


Q ss_pred             -------HHHHHHHHHhcCCHHHHHHHHHHHhhccC---CChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHH
Q 005817          465 -------AHRYVTLYLQLGKLDEARKLAAKLCSGKL---SDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (676)
Q Consensus       465 -------w~~~~~l~~~~~~~~~A~~l~~~al~~~~---P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al  534 (676)
                             .+..+-.+...|++++|+..|++++ +..   |.....|.  +.+....+          +.+++...|++++
T Consensus       233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll-~~~~~~P~~a~~~l--a~~yl~~g----------~~e~A~~~l~~~l  299 (765)
T PRK10049        233 TADYQRARIDRLGALLARDRYKDVISEYQRLK-AEGQIIPPWAQRWV--ASAYLKLH----------QPEKAQSILTELF  299 (765)
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCCHHHHHHH--HHHHHhcC----------CcHHHHHHHHHHh
Confidence                   2221233457799999999999999 653   66677776  44454444          4789999999988


Q ss_pred             hhcChh--hhHHHHHHHH-HHHHh-hhHHHHHHHHHHHHhhhhCCC-------CCCCcc---hHHHHHHHHHHhcCHHHH
Q 005817          535 TKVSAL--ESESLWLMAL-KFFMN-QKHYFDKLVEIALISVAKDGG-------GESGFS---LPSAIINLVIQKDGIQQA  600 (676)
Q Consensus       535 ~~~~~~--~~~~lW~~~l-~~~~~-~~~~~~~~~~~a~~~~~~~~~-------~~~~~~---~~~~y~~~~~~~g~~~~A  600 (676)
                      ..-|..  ........+. -+++. ..+.+...++.+... .|...       ..+...   ....++..+...|+.++|
T Consensus       300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~-~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA  378 (765)
T PRK10049        300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN-SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA  378 (765)
T ss_pred             hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc-CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence            754322  0111122111 11111 113333444444432 12100       000111   122345667788999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcc
Q 005817          601 REMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSL  672 (676)
Q Consensus       601 r~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~  672 (676)
                      .+++++++...|.+..++...+.+....+      ..+.|.+++++|+..+|+++.++...+..-...|+.+
T Consensus       379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g------~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~  444 (765)
T PRK10049        379 EMRARELAYNAPGNQGLRIDYASVLQARG------WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWR  444 (765)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHH
Confidence            99999999999999999999999988888      8999999999999999999889888887777666543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=99.61  E-value=2.1e-11  Score=123.04  Aligned_cols=425  Identities=15%  Similarity=0.213  Sum_probs=256.6

Q ss_pred             HHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhC
Q 005817           75 VKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRF  154 (676)
Q Consensus        75 ~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~  154 (676)
                      -+-|..+|....--|--...|..|+.-|+.       |                         ...+.+..+|-||+..-
T Consensus        59 ~~~re~yeq~~~pfp~~~~aw~ly~s~ELA-------~-------------------------~df~svE~lf~rCL~k~  106 (660)
T COG5107          59 DAEREMYEQLSSPFPIMEHAWRLYMSGELA-------R-------------------------KDFRSVESLFGRCLKKS  106 (660)
T ss_pred             HHHHHHHHHhcCCCccccHHHHHHhcchhh-------h-------------------------hhHHHHHHHHHHHHhhh
Confidence            347889999998888889999999999864       2                         13566778999999875


Q ss_pred             CCCHHHHHHHHHHHHHcc-----Cc--hHHHHHHHHHH---hCCCCHHHHHHHHHHHH--------HhCCCHHHHHHHHH
Q 005817          155 KGDIELWFKYMEFCRQRK-----NG--RMKKVLAQVIR---FHPKVPGVWIYAAAWEF--------DHNLNVTAARALMQ  216 (676)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-----~~--~~~~~~~ral~---~~P~~~~lW~~~a~~e~--------~~~~~~~~Ar~~~~  216 (676)
                      - +.+||..|+++.++.+     ..  ..-++|+=.+.   ..|.+..+|-.|+.|.-        +.+..++..|..|+
T Consensus       107 l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~  185 (660)
T COG5107         107 L-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM  185 (660)
T ss_pred             c-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence            5 6999999999998753     11  23455555444   67889999999997641        23347999999999


Q ss_pred             HHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcch
Q 005817          217 NGLRVCPTS-EELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM  295 (676)
Q Consensus       217 ral~~~p~~-~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (676)
                      |||.+--++ +++|..|-.||.. ++++.+|+- .|...      |                                  
T Consensus       186 ral~tP~~nleklW~dy~~fE~e-~N~~TarKf-vge~s------p----------------------------------  223 (660)
T COG5107         186 RALQTPMGNLEKLWKDYENFELE-LNKITARKF-VGETS------P----------------------------------  223 (660)
T ss_pred             HHHcCccccHHHHHHHHHHHHHH-HHHHHHHHH-hcccC------H----------------------------------
Confidence            999875555 7899999999986 566777763 23210      0                                  


Q ss_pred             hhhhhhhhHHHhhhHHHHHHHHHHHh-----------------cCC-CchhHHHHHHHHHHHhc--ccC--cHHHHHHHH
Q 005817          296 ESQKSVDLFREQGLRVLQTIYSGAVE-----------------ALP-SSFNLRQRFFEIVEATN--LAQ--SDDMHDKIL  353 (676)
Q Consensus       296 ~~~~~~~~~~~~~~~~a~~iy~~Al~-----------------~~p-~~~~~~~~~~~~~~~fe--~~~--~~~~a~~il  353 (676)
                                  -+-.|+..|+....                 .+| ....-|..+++.-..-.  +++  ......-++
T Consensus       224 ------------~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~  291 (660)
T COG5107         224 ------------IYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIH  291 (660)
T ss_pred             ------------HHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHH
Confidence                        01111111111110                 011 11122555555433211  111  122344566


Q ss_pred             HHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccC
Q 005817          354 SDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRD  433 (676)
Q Consensus       354 ~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~  433 (676)
                      ++++.-+|-.+++|+.+..+.+.             .++-++|..+-++|+..+|+..  ..|...++-     .     
T Consensus       292 ~q~~~y~~~~~evw~dys~Y~~~-------------isd~q~al~tv~rg~~~spsL~--~~lse~yel-----~-----  346 (660)
T COG5107         292 NQILDYFYYAEEVWFDYSEYLIG-------------ISDKQKALKTVERGIEMSPSLT--MFLSEYYEL-----V-----  346 (660)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHhh-------------ccHHHHHHHHHHhcccCCCchh--eeHHHHHhh-----c-----
Confidence            77777777777777777666554             2445667777777777776622  112222211     0     


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817          434 SELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ-----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (676)
Q Consensus       434 ~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~-----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (676)
                              ++-+.....|+++++.      +-..|-....+     .|+++....++-+-.    ..-.-+|.-+++...
T Consensus       347 --------nd~e~v~~~fdk~~q~------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~  408 (660)
T COG5107         347 --------NDEEAVYGCFDKCTQD------LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVL  408 (660)
T ss_pred             --------ccHHHHhhhHHHHHHH------HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHH
Confidence                    1123333334443321      11122111111     122221111111111    123456777777666


Q ss_pred             HhccccCCCCChhchHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhCCCCCCCcchHHH
Q 005817          509 RCVTRNSFSPSKADILSIFELLKCILTKVS-ALESESLWLMALKFFMNQK-HYFDKLVEIALISVAKDGGGESGFSLPSA  586 (676)
Q Consensus       509 ~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~-~~~~~~lW~~~l~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  586 (676)
                      +..          .++.++.+|.++=+. + ....+-+...+++++.... ..+-++|+..+..+ |+.     +.....
T Consensus       409 r~~----------Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f-~d~-----~~y~~k  471 (660)
T COG5107         409 RKR----------GLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKF-PDS-----TLYKEK  471 (660)
T ss_pred             HHh----------hHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhC-CCc-----hHHHHH
Confidence            542          378889999988542 2 1111234455666665443 34556777666543 333     356668


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          587 IINLVIQKDGIQQAREMYKRFLALPR--PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       587 y~~~~~~~g~~~~Ar~iy~~al~~~p--~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      |+.|+...++...||.+|++++.--.  .-..+|.++|+.|...|      +++.+-.+=++..+.+|
T Consensus       472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G------~lN~v~sLe~rf~e~~p  533 (660)
T COG5107         472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG------SLNNVYSLEERFRELVP  533 (660)
T ss_pred             HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc------chHHHHhHHHHHHHHcC
Confidence            99999999999999999998874322  22469999999999999      88888888888888887

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=99.58  E-value=9.4e-12  Score=131.27  Aligned_cols=410  Identities=13%  Similarity=0.111  Sum_probs=255.0

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHH---------Hcc-----CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHH
Q 005817          146 IYRLAVMRFKGDIELWFKYMEFCR---------QRK-----NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAA  211 (676)
Q Consensus       146 iyeral~~~p~~~~lW~~y~~~~~---------~~~-----~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~A  211 (676)
                      -...++.++|++.+.|-.....-.         ..+     ...++.+|+..|...|.+...|..||.++. ..|++.++
T Consensus        20 ~~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s   98 (577)
T KOG1258|consen   20 TDNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENS   98 (577)
T ss_pred             ccchhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHH
Confidence            344666777777777754332211         111     246799999999999999999999999997 68899999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCC
Q 005817          212 RALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQ  291 (676)
Q Consensus       212 r~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (676)
                      -.+|+||++..|.|..+|..|.+|.....                                                   
T Consensus        99 ~~Vfergv~aip~SvdlW~~Y~~f~~n~~---------------------------------------------------  127 (577)
T KOG1258|consen   99 VKVFERGVQAIPLSVDLWLSYLAFLKNNN---------------------------------------------------  127 (577)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhccC---------------------------------------------------
Confidence            99999999999999999999999865310                                                   


Q ss_pred             CcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHhcCCCChhhH
Q 005817          292 PENMESQKSVDLFREQGLRVLQTIYSGAVEALPSS---FNLRQRFFEIVEATNL-AQSDDMHDKILSDMQRDFLVDPKYW  367 (676)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~---~~~~~~~~~~~~~fe~-~~~~~~a~~il~~~~~~~p~~~~~w  367 (676)
                                     ++.+..+..|++|+..+..+   ..||..+++    |+. +.+......+|+++++.--.....+
T Consensus       128 ---------------~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie----~en~qks~k~v~~iyeRileiP~~~~~~~  188 (577)
T KOG1258|consen  128 ---------------GDPETLRDLFERAKSYVGLDFLSDPLWDKYIE----FENGQKSWKRVANIYERILEIPLHQLNRH  188 (577)
T ss_pred             ---------------CCHHHHHHHHHHHHHhcccchhccHHHHHHHH----HHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence                           12234688999999887654   356666554    442 2356778888888776422211111


Q ss_pred             -HHHHHHhccccCCCCCCCcCcchhHHHH----H---------------HHHHHHHhhccCc--hh------HHHHHHHH
Q 005817          368 -DWLARLKMTDSVSKDGTSEDIVPSQMQK----A---------------IQVYEEALKNVPS--SM------IFDLYTKF  419 (676)
Q Consensus       368 -~~la~~~~~~~~~~~~~~~~~~~~~~~~----A---------------~~~ye~al~~~~~--~~------lw~~y~~~  419 (676)
                       ..+-+. +.+...    +   ....++.    .               .+..+.+++.+..  ..      +-..++..
T Consensus       189 f~~f~~~-l~~~~~----~---~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~  260 (577)
T KOG1258|consen  189 FDRFKQL-LNQNEE----K---ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI  260 (577)
T ss_pred             HHHHHHH-HhcCCh----h---hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH
Confidence             111111 010000    0   0000110    0               1111111111110  00      11111111


Q ss_pred             HHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 005817          420 LMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----GCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSG  491 (676)
Q Consensus       420 ~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~-----~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~  491 (676)
                      .++.+.              ........+..++..+.-     .|.+   -..|..|+.+....|+.+.+..++++++ -
T Consensus       261 ~~~~~~--------------~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercl-i  325 (577)
T KOG1258|consen  261 HEKVYQ--------------KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCL-I  325 (577)
T ss_pred             HHHHHH--------------hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHH-h
Confidence            111100              001123455566666653     3333   3579999999999999999999999999 8


Q ss_pred             cCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Q 005817          492 KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALI  569 (676)
Q Consensus       492 ~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~  569 (676)
                      .|....++|.+|+......|          +.+-+..++..|.+..-++. ..+-.+++.+-+..+  ..+..+++....
T Consensus       326 ~cA~Y~efWiky~~~m~~~~----------~~~~~~~~~~~~~~i~~k~~-~~i~L~~a~f~e~~~n~~~A~~~lq~i~~  394 (577)
T KOG1258|consen  326 PCALYDEFWIKYARWMESSG----------DVSLANNVLARACKIHVKKT-PIIHLLEARFEESNGNFDDAKVILQRIES  394 (577)
T ss_pred             HHhhhHHHHHHHHHHHHHcC----------chhHHHHHHHhhhhhcCCCC-cHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence            89999999999999888765          35666666777766432221 222233333222222  345667776665


Q ss_pred             hhhhCCCCCCCcchHHHHHHHHHHhcCHHHHH---HHHHHHHcCC---CCCHHHHHHHHHHHhhccCCCCccchHHHHHH
Q 005817          570 SVAKDGGGESGFSLPSAIINLVIQKDGIQQAR---EMYKRFLALP---RPGLVLYQNCIELENNLASVGDKDSLVNARKL  643 (676)
Q Consensus       570 ~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar---~iy~~al~~~---p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~l  643 (676)
                      .+ |..     -.+...++.|+.++|+.+.+.   .+|.......   ..-..++.+++.+-....     .+.+.|+.+
T Consensus       395 e~-pg~-----v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~-----~d~~~a~~~  463 (577)
T KOG1258|consen  395 EY-PGL-----VEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR-----EDADLARII  463 (577)
T ss_pred             hC-Cch-----hhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh-----cCHHHHHHH
Confidence            55 433     233345899999999999988   4444433211   112347777777765543     178999999


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHhhcCCc
Q 005817          644 FESALATYDQNTSLWRDYYSTETKVSFS  671 (676)
Q Consensus       644 ye~al~~~~~~~~lW~~y~~fE~~~G~~  671 (676)
                      +..|+...|.+..+|++++.|+...+..
T Consensus       464 l~~~~~~~~~~k~~~~~~~~~~~~~~~~  491 (577)
T KOG1258|consen  464 LLEANDILPDCKVLYLELIRFELIQPSG  491 (577)
T ss_pred             HHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999988743

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=99.55  E-value=5.8e-10  Score=114.74  Aligned_cols=477  Identities=15%  Similarity=0.186  Sum_probs=256.8

Q ss_pred             chHHHHHHHH-HhhhHhHHHHHHc-----CCCCHHHHH-HHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 005817           41 AMADVVQYRL-ERMVDELDDLERR-----GLFTRHEIS-EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRK  113 (676)
Q Consensus        41 ~ma~~v~~~~-e~~~~e~~~~~~~-----~~~~~~ei~-~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~  113 (676)
                      ..-|++.+.. |--+.+|...+++     .-|++..|. .|+.   .|=.++.|-+..+.-|..||.|=..       + 
T Consensus        50 ~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~---lyr~at~rf~~D~~lW~~yi~f~kk-------~-  118 (568)
T KOG2396|consen   50 SIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVF---LYRRATNRFNGDVKLWLSYIAFCKK-------K-  118 (568)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH---HHHHHHHhcCCCHHHHHHHHHHHHH-------h-
Confidence            5556665544 6666677766553     234555553 2332   3445667777789999999999521       0 


Q ss_pred             hhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CchHHHHHHHHHHhCCCCH
Q 005817          114 KSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRFHPKVP  191 (676)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~~P~~~  191 (676)
                                              ....++..||..+++.+|+++++|..-+.++-..+  .+.++.+|-|+|+.||++|
T Consensus       119 ------------------------~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp  174 (568)
T KOG2396|consen  119 ------------------------KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP  174 (568)
T ss_pred             ------------------------cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh
Confidence                                    12567789999999999999999999999987765  4789999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhh
Q 005817          192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWIN  271 (676)
Q Consensus       192 ~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~  271 (676)
                      .+|..|.++|+..   +++++. -.+.+.....+..  .+.-+-+..+.+        ..-..          +.     
T Consensus       175 ~Lw~eyfrmEL~~---~~Kl~~-rr~~~g~~~~~~~--~eie~ge~~~~~--------~~~s~----------~~-----  225 (568)
T KOG2396|consen  175 KLWKEYFRMELMY---AEKLRN-RREELGLDSSDKD--EEIERGELAWIN--------YANSV----------DI-----  225 (568)
T ss_pred             HHHHHHHHHHHHH---HHHHHH-HHHHhccccchhH--HHHHHHHHHHHh--------hccch----------hh-----
Confidence            9999999998731   222211 1122222222221  111111111100        00000          00     


Q ss_pred             hccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHhcccC---
Q 005817          272 ENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSF----NLRQRFFEIVEATNLAQ---  344 (676)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~----~~~~~~~~~~~~fe~~~---  344 (676)
                            +.+....       +. .+.......+    .+.-+.+++......|+++    ++...+++.+.+-...+   
T Consensus       226 ------~~~~~k~-------~e-~~~~~~~d~~----kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~  287 (568)
T KOG2396|consen  226 ------IKGAVKS-------VE-LSVAEKFDFL----KELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDN  287 (568)
T ss_pred             ------hhcchhh-------cc-hHHHHHHHHH----HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhh
Confidence                  0000000       00 0000000000    1112333333333333333    33344444433322111   


Q ss_pred             ---------cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC-chhHHH
Q 005817          345 ---------SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP-SSMIFD  414 (676)
Q Consensus       345 ---------~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~-~~~lw~  414 (676)
                               ..+....+++.++..-|+ ..+|.++....++...       ......+..-..+|+.+..... +.....
T Consensus       288 ~~~~~~~~~k~s~~~~v~ee~v~~l~t-~sm~e~YI~~~lE~~~-------~~r~~~I~h~~~~~~~~~~~~~l~~~~~~  359 (568)
T KOG2396|consen  288 QAKAVEVGSKESRCCAVYEEAVKTLPT-ESMWECYITFCLERFT-------FLRGKRILHTMCVFRKAHELKLLSECLYK  359 (568)
T ss_pred             hhhchhcchhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHHhcccccchHH
Confidence                     122334456665555443 3556555555443211       0012255666677777765432 223555


Q ss_pred             HHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcc
Q 005817          415 LYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE-AMGCLTEDIAHRYVTLYLQLG-KLDEARKLAAKLCSGK  492 (676)
Q Consensus       415 ~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al-~~~p~~~~lw~~~~~l~~~~~-~~~~A~~l~~~al~~~  492 (676)
                      .|+....-...                  ...++.+-.... ....++..+|..++..+.+.. +.+-.....-..+ +.
T Consensus       360 ~ys~~~l~~~t------------------~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~-r~  420 (568)
T KOG2396|consen  360 QYSVLLLCLNT------------------LNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHL-RK  420 (568)
T ss_pred             HHHHHHHHHhc------------------cchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHH-HH
Confidence            56555443211                  122222222222 223567889999999988543 3333222222334 33


Q ss_pred             CCC--hHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHH
Q 005817          493 LSD--SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIAL  568 (676)
Q Consensus       493 ~P~--~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~  568 (676)
                      .|.  ....|...+     .++    +    --..+..++-.|+.++-..+...|=..|++++-..+  ..+++++....
T Consensus       421 ~~~s~~~~~w~s~~-----~~d----s----l~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~  487 (568)
T KOG2396|consen  421 QVCSELLISWASAS-----EGD----S----LQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQ  487 (568)
T ss_pred             HhcchhHHHHHHHh-----hcc----c----hhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHH
Confidence            333  345666655     111    0    012334445555555433334444445555543332  45666666543


Q ss_pred             HhhhhCCCCCCCcchHHHHHHHHHH--hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHH
Q 005817          569 ISVAKDGGGESGFSLPSAIINLVIQ--KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFES  646 (676)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~y~~~~~~--~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~  646 (676)
                      . ++|-     ..+++...++++..  .-|+..+|..|+.|+.....++.+|+.|..+|..+|      ..+.+-.+|.+
T Consensus       488 ~-lpp~-----sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g------~~en~~~~~~r  555 (568)
T KOG2396|consen  488 E-LPPF-----SLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLG------RPENCGQIYWR  555 (568)
T ss_pred             h-CCCc-----cHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCC------CcccccHHHHH
Confidence            2 3222     23555566777654  346999999999999888899999999999999999      66888999999


Q ss_pred             HHhhC
Q 005817          647 ALATY  651 (676)
Q Consensus       647 al~~~  651 (676)
                      |....
T Consensus       556 a~ktl  560 (568)
T KOG2396|consen  556 AMKTL  560 (568)
T ss_pred             HHHhh
Confidence            98864

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.52  E-value=5.2e-10  Score=123.20  Aligned_cols=268  Identities=12%  Similarity=0.062  Sum_probs=157.9

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN---GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM  215 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~---~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~  215 (676)
                      ....+..+|..|....-.+...|.--.-|+...+.   +.+-..|...++.+|.+.-.-+--|.+.+ ..+|+..|..+|
T Consensus       109 ~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~y-nkkdY~~al~yy  187 (1018)
T KOG2002|consen  109 LFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAY-NKKDYRGALKYY  187 (1018)
T ss_pred             HHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHh-ccccHHHHHHHH
Confidence            56778899999998888888888877778776653   47889999999999998888888888887 567999999999


Q ss_pred             HHHHHhCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817          216 QNGLRVCPTSE-----ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS  290 (676)
Q Consensus       216 ~ral~~~p~~~-----~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (676)
                      +++|+.+|...     -+|..+.++-                                                      
T Consensus       188 k~al~inp~~~aD~rIgig~Cf~kl~------------------------------------------------------  213 (1018)
T KOG2002|consen  188 KKALRINPACKADVRIGIGHCFWKLG------------------------------------------------------  213 (1018)
T ss_pred             HHHHhcCcccCCCccchhhhHHHhcc------------------------------------------------------
Confidence            99999999641     2344444332                                                      


Q ss_pred             CCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHH
Q 005817          291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWL  370 (676)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~l  370 (676)
                                       ..+.|+..|.+|++..|+++.....+..+-..|..+.....+...+.++-..+|.+|.+...+
T Consensus       214 -----------------~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~L  276 (1018)
T KOG2002|consen  214 -----------------MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHL  276 (1018)
T ss_pred             -----------------chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence                             234556666666666666554444333222223222234455555556666666666666666


Q ss_pred             HHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHH
Q 005817          371 ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT  449 (676)
Q Consensus       371 a~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~  449 (676)
                      |..++.             .++++.+..+++-+++...... +-..|-..-...               +.+|++++|..
T Consensus       277 An~fyf-------------K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~---------------Ha~Gd~ekA~~  328 (1018)
T KOG2002|consen  277 ANHFYF-------------KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY---------------HAQGDFEKAFK  328 (1018)
T ss_pred             HHHHhh-------------cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---------------HhhccHHHHHH
Confidence            666543             3556666666666655432111 111111111111               12344555555


Q ss_pred             HHHHHHHcCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817          450 VYEKAEAMGCLT-EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (676)
Q Consensus       450 iye~al~~~p~~-~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (676)
                      .|-.++..++.+ .--.+..+++++..|+++.+...+++.+ +..|++.+.......++
T Consensus       329 yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~-k~~p~~~etm~iLG~Ly  386 (1018)
T KOG2002|consen  329 YYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL-KQLPNNYETMKILGCLY  386 (1018)
T ss_pred             HHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH-HhCcchHHHHHHHHhHH
Confidence            555555554444 2223344555555555555555555555 44555544444444433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.50  E-value=5.2e-11  Score=128.16  Aligned_cols=259  Identities=9%  Similarity=-0.024  Sum_probs=194.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCCHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV----PGVWIYAAAWEFDHNLNVTAARAL  214 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~----~~lW~~~a~~e~~~~~~~~~Ar~~  214 (676)
                      ...|...|++++...|++...|...+.++...| ...+..++++++...+..    ...|...+.... ..|+++.|..+
T Consensus        51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~  129 (389)
T PRK11788         51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL-KAGLLDRAEEL  129 (389)
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHH
Confidence            466899999999999999999999999888777 578899999988753332    246777777765 67899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc
Q 005817          215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN  294 (676)
Q Consensus       215 ~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (676)
                      |++++...|.+...+..++.+....                                                       
T Consensus       130 ~~~~l~~~~~~~~~~~~la~~~~~~-------------------------------------------------------  154 (389)
T PRK11788        130 FLQLVDEGDFAEGALQQLLEIYQQE-------------------------------------------------------  154 (389)
T ss_pred             HHHHHcCCcchHHHHHHHHHHHHHh-------------------------------------------------------
Confidence            9999998887766666555543221                                                       


Q ss_pred             hhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh-----HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHH
Q 005817          295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN-----LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW  369 (676)
Q Consensus       295 ~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~-----~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~  369 (676)
                                  ++++.|...|+++++..|.+..     ++..+...+   ...+..+.+...++++++..|++...+..
T Consensus       155 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~  219 (389)
T PRK11788        155 ------------KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA---LARGDLDAARALLKKALAADPQCVRASIL  219 (389)
T ss_pred             ------------chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHhHCcCCHHHHHH
Confidence                        2556778888888877665422     222221111   12245778999999999999999999999


Q ss_pred             HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHH
Q 005817          370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHL  447 (676)
Q Consensus       370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a  447 (676)
                      ++..+..             .+++++|...|++++...|...  .+...+.....                  .|..+.|
T Consensus       220 la~~~~~-------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~------------------~g~~~~A  268 (389)
T PRK11788        220 LGDLALA-------------QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA------------------LGDEAEG  268 (389)
T ss_pred             HHHHHHH-------------CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH------------------cCCHHHH
Confidence            9988865             4789999999999998766432  23222222221                  3678999


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817          448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL  502 (676)
Q Consensus       448 ~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~  502 (676)
                      ...+++++..+|... .+...+.++.+.|++++|..++++++ +..|++..+...
T Consensus       269 ~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l-~~~P~~~~~~~l  321 (389)
T PRK11788        269 LEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQL-RRHPSLRGFHRL  321 (389)
T ss_pred             HHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHH-HhCcCHHHHHHH
Confidence            999999999988764 45889999999999999999999999 889998765533

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.49  E-value=1.2e-13  Score=141.39  Aligned_cols=262  Identities=15%  Similarity=0.103  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHcc-CchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817          159 ELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM  235 (676)
Q Consensus       159 ~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~  235 (676)
                      ...+.++......| ++.+..++.+.+...  |+++.+|..++.... ..++.+.|+..+++.+...|.++.....++.+
T Consensus         9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l   87 (280)
T PF13429_consen    9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW-SLGDYDEAIEAYEKLLASDKANPQDYERLIQL   87 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            44456777776666 578888887766554  788899999888875 67789999999999998888776666665555


Q ss_pred             HHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHH
Q 005817          236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTI  315 (676)
Q Consensus       236 e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i  315 (676)
                       ...                                                                   ++++.|..+
T Consensus        88 -~~~-------------------------------------------------------------------~~~~~A~~~   99 (280)
T PF13429_consen   88 -LQD-------------------------------------------------------------------GDPEEALKL   99 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -ccc-------------------------------------------------------------------ccccccccc
Confidence             211                                                                   133445555


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhc--CCCChhhHHHHHHHhccccCCCCCCCcCcchhHH
Q 005817          316 YSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRD--FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM  393 (676)
Q Consensus       316 y~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~--~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~  393 (676)
                      ++.+.+..++ ..++..++.++...   +..+.+..+++++...  .|+++.+|..+|..+..             .|+.
T Consensus       100 ~~~~~~~~~~-~~~l~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-------------~G~~  162 (280)
T PF13429_consen  100 AEKAYERDGD-PRYLLSALQLYYRL---GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ-------------LGDP  162 (280)
T ss_dssp             -------------------H-HHHT---T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH-------------CCHH
T ss_pred             cccccccccc-cchhhHHHHHHHHH---hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-------------cCCH
Confidence            5555554433 34444444444332   2456777777776543  36778888888888865             5788


Q ss_pred             HHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 005817          394 QKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLY  472 (676)
Q Consensus       394 ~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~  472 (676)
                      ++|...|++|++..|.+. ++..++.+...                  .|+.++++.+++......|.++.+|..++..+
T Consensus       163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~  224 (280)
T PF13429_consen  163 DKALRDYRKALELDPDDPDARNALAWLLID------------------MGDYDEAREALKRLLKAAPDDPDLWDALAAAY  224 (280)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence            999999999999888754 55555444332                  35567777777777777678888999999999


Q ss_pred             HhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817          473 LQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (676)
Q Consensus       473 ~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~  535 (676)
                      ...|++++|+..+++++ +..|+++.+...+++.....|.          .+++.+++.+++.
T Consensus       225 ~~lg~~~~Al~~~~~~~-~~~p~d~~~~~~~a~~l~~~g~----------~~~A~~~~~~~~~  276 (280)
T PF13429_consen  225 LQLGRYEEALEYLEKAL-KLNPDDPLWLLAYADALEQAGR----------KDEALRLRRQALR  276 (280)
T ss_dssp             HHHT-HHHHHHHHHHHH-HHSTT-HHHHHHHHHHHT---------------------------
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccc----------ccccccccccccc
Confidence            99999999999999999 7889999999999988887764          5777777777664

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.49  E-value=7e-10  Score=122.25  Aligned_cols=407  Identities=14%  Similarity=0.081  Sum_probs=251.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHhCCCHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV-P----GVWIYAAAWEFDHNLNVTAARA  213 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~-~----~lW~~~a~~e~~~~~~~~~Ar~  213 (676)
                      ...|...|...++..|+++-..+-=+.+.-..+ +..+...|.++|..+|.. +    .+|.+++     ..|+.+.|+.
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~-----kl~~~~~a~~  220 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFW-----KLGMSEKALL  220 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHH-----hccchhhHHH
Confidence            567888999999999999887766666655544 578899999999999973 2    3454433     3568899999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817          214 LMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE  293 (676)
Q Consensus       214 ~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (676)
                      .|+|+++++|++......+.-+.+.+.+.                                                   
T Consensus       221 a~~ralqLdp~~v~alv~L~~~~l~~~d~---------------------------------------------------  249 (1018)
T KOG2002|consen  221 AFERALQLDPTCVSALVALGEVDLNFNDS---------------------------------------------------  249 (1018)
T ss_pred             HHHHHHhcChhhHHHHHHHHHHHHHccch---------------------------------------------------
Confidence            99999999999888777777665554111                                                   


Q ss_pred             chhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC---hhhHHHH
Q 005817          294 NMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD---PKYWDWL  370 (676)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~---~~~w~~l  370 (676)
                                   .++..+...+.+|....|.++.+...+...|   -..+.+..+.++...++...-..   .+..+.+
T Consensus       250 -------------~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~f---yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~  313 (1018)
T KOG2002|consen  250 -------------DSYKKGVQLLQRAYKENNENPVALNHLANHF---YFKKDYERVWHLAEHAIKNTENKSIKAESFYQL  313 (1018)
T ss_pred             -------------HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH---hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence                         1345556666666666666655544433322   11234555666555555443222   2335566


Q ss_pred             HHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817          371 ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV  450 (676)
Q Consensus       371 a~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i  450 (676)
                      |+.+-.             +|++++|-..|-++++..+.+.+...| .+-+-.+               ..|.++.+..-
T Consensus       314 gRs~Ha-------------~Gd~ekA~~yY~~s~k~~~d~~~l~~~-GlgQm~i---------------~~~dle~s~~~  364 (1018)
T KOG2002|consen  314 GRSYHA-------------QGDFEKAFKYYMESLKADNDNFVLPLV-GLGQMYI---------------KRGDLEESKFC  364 (1018)
T ss_pred             HHHHHh-------------hccHHHHHHHHHHHHccCCCCcccccc-chhHHHH---------------HhchHHHHHHH
Confidence            666644             577888888888888877664222111 1111111               24667888888


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHH
Q 005817          451 YEKAEAMGCLTEDIAHRYVTLYLQLG----KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSI  526 (676)
Q Consensus       451 ye~al~~~p~~~~lw~~~~~l~~~~~----~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~  526 (676)
                      |++.+...|.+.+.---.+.++...+    ..+.|..++.+++ ...|.+.+.|...+++++...           +-..
T Consensus       365 fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~-~~~~~d~~a~l~laql~e~~d-----------~~~s  432 (1018)
T KOG2002|consen  365 FEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL-EQTPVDSEAWLELAQLLEQTD-----------PWAS  432 (1018)
T ss_pred             HHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHhcC-----------hHHH
Confidence            88888888887765555555555443    4567888888888 778888888888888887643           3333


Q ss_pred             HHHHHHHHh-------hcChhh--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHH--HHHHHHhc
Q 005817          527 FELLKCILT-------KVSALE--SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAI--INLVIQKD  595 (676)
Q Consensus       527 ~~~f~~Al~-------~~~~~~--~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y--~~~~~~~g  595 (676)
                      ...|..|+.       .+|+..  .+.-..+.++.+..+.+.+.++..++....+++.+.  ...+-..|  +..+...+
T Consensus       433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~--~~~lt~~YNlarl~E~l~  510 (1018)
T KOG2002|consen  433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK--STNLTLKYNLARLLEELH  510 (1018)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc--cchhHHHHHHHHHHHhhh
Confidence            556666663       244331  111122223334444444444444332222233220  12222233  44455677


Q ss_pred             CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhh
Q 005817          596 GIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETK  667 (676)
Q Consensus       596 ~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~  667 (676)
                      +.+.|-++|...+..+|.-..-+....-|.....      +...+-.++..+++....++.+|--+..+..+
T Consensus       511 ~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~------~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~  576 (1018)
T KOG2002|consen  511 DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN------NLYEASLLLKDALNIDSSNPNARSLLGNLHLK  576 (1018)
T ss_pred             hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc------CcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence            8888888888888877655555554444444433      67788888888888877788888877765544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.42  E-value=2.5e-12  Score=131.69  Aligned_cols=246  Identities=15%  Similarity=0.117  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRF--KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (676)
Q Consensus       140 ~~~~~~iyeral~~~--p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~  216 (676)
                      ...|..++++++...  |++..+|..++.++...+ .+.+..+|++++...|.++.....++.+ . ..++++.|..++.
T Consensus        24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~-~~~~~~~A~~~~~  101 (280)
T PF13429_consen   24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L-QDGDPEEALKLAE  101 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc
Confidence            567888997777665  899999999999988776 6789999999999999999998888888 4 5779999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817          217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME  296 (676)
Q Consensus       217 ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (676)
                      ++.+..++ +..|..++.+....                                                         
T Consensus       102 ~~~~~~~~-~~~l~~~l~~~~~~---------------------------------------------------------  123 (280)
T PF13429_consen  102 KAYERDGD-PRYLLSALQLYYRL---------------------------------------------------------  123 (280)
T ss_dssp             -----------------H-HHHT---------------------------------------------------------
T ss_pred             cccccccc-cchhhHHHHHHHHH---------------------------------------------------------
Confidence            99987654 67777766553321                                                         


Q ss_pred             hhhhhhhHHHhhhHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 005817          297 SQKSVDLFREQGLRVLQTIYSGAVEA--LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK  374 (676)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~Al~~--~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~  374 (676)
                                ++.+.+..+++.+...  .|.+..+|..+-.++.+-   +..+.+...++++++..|+++.++..++...
T Consensus       124 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~---G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l  190 (280)
T PF13429_consen  124 ----------GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL---GDPDKALRDYRKALELDPDDPDARNALAWLL  190 (280)
T ss_dssp             ----------T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             ----------hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                      1344556666665543  356667777665555443   4578999999999999999999998888887


Q ss_pred             ccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817          375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (676)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~  453 (676)
                      +.             .++.++++.+++...+..|++. +|..+......                  .|..++|...|++
T Consensus       191 i~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~------------------lg~~~~Al~~~~~  239 (280)
T PF13429_consen  191 ID-------------MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ------------------LGRYEEALEYLEK  239 (280)
T ss_dssp             CT-------------TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH------------------HT-HHHHHHHHHH
T ss_pred             HH-------------CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc------------------ccccccccccccc
Confidence            65             4677888888887777765543 77777665554                  3678999999999


Q ss_pred             HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       454 al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      ++..+|.++.+...|++.+...|+.++|..++.+++
T Consensus       240 ~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  240 ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHSTT-HHHHHHHHHHHT----------------
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999987

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.39  E-value=2.8e-08  Score=117.39  Aligned_cols=70  Identities=13%  Similarity=0.073  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817          442 HYISHLLTVYEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~-p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (676)
                      |.++.|..+|++....+ ..+...|...++.+.+.|++++|..+++.+....++.+...|...|..+.+.+
T Consensus       628 G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G  698 (1060)
T PLN03218        628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK  698 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            34455555555544432 11233444445555555555555555555543333444445555554444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.39  E-value=4.7e-09  Score=122.98  Aligned_cols=374  Identities=7%  Similarity=-0.084  Sum_probs=214.5

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHH-H
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS---EELWVEYLRMELTYLNKLKARK-V  248 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~---~~lW~~y~~~e~~~~~~~~~r~-~  248 (676)
                      ..++........+..|.+++.-..+.-..+ .+|+...|+.+|++++...++.   ..+-...+.+..........++ .
T Consensus       358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  436 (987)
T PRK09782        358 KAEALRLARLLYQQEPANLTRLDQLTWQLM-QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA  436 (987)
T ss_pred             hhHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence            346667777777777888887777777776 6889999999999999874432   2233344444333221111111 1


Q ss_pred             HhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhH---HHHHHHHHHHhcCCC
Q 005817          249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLR---VLQTIYSGAVEALPS  325 (676)
Q Consensus       249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~iy~~Al~~~p~  325 (676)
                      .|+.-                          ++                 ......|.+...   .+...+.+++...|.
T Consensus       437 ~l~~~--------------------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~  473 (987)
T PRK09782        437 ILSKP--------------------------LP-----------------LAEQRQWQSQLPGIADNCPAIVRLLGDMSP  473 (987)
T ss_pred             Hhccc--------------------------cc-----------------cchhHHHHhhhhhhhhhHHHHHHhcccCCC
Confidence            11100                          00                 000011112222   233444444444454


Q ss_pred             --chhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHH
Q 005817          326 --SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEA  403 (676)
Q Consensus       326 --~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~a  403 (676)
                        +...|..+-.++..    .....+...+.+.+...|++.. ...++.....             .++++.|...|+++
T Consensus       474 ~~~~~a~~~LG~~l~~----~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~-------------~Gr~eeAi~~~rka  535 (987)
T PRK09782        474 SYDAAAWNRLAKCYRD----TLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQ-------------VEDYATALAAWQKI  535 (987)
T ss_pred             CCCHHHHHHHHHHHHh----CCcHHHHHHHHHHHHhCCchHH-HHHHHHHHHH-------------CCCHHHHHHHHHHH
Confidence              55555544433322    2344566767777777776532 3333443222             35677777778777


Q ss_pred             hhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 005817          404 LKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARK  483 (676)
Q Consensus       404 l~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~  483 (676)
                      +..-|....|.........                  .|+.+.|...|++++..+|....++...+......|++++|..
T Consensus       536 ~~~~p~~~a~~~la~all~------------------~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~  597 (987)
T PRK09782        536 SLHDMSNEDLLAAANTAQA------------------AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN  597 (987)
T ss_pred             hccCCCcHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence            6554443333333222222                  3556777777777777777666555544444445577888888


Q ss_pred             HHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHH
Q 005817          484 LAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFD  561 (676)
Q Consensus       484 l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~  561 (676)
                      .+++++ +..|+ ...|...+.+..+.|          +.+++...|++++...|...  ..+..+...+...+  +.+.
T Consensus       598 ~~~~AL-~l~P~-~~a~~~LA~~l~~lG----------~~deA~~~l~~AL~l~Pd~~--~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        598 DLTRSL-NIAPS-ANAYVARATIYRQRH----------NVPAAVSDLRAALELEPNNS--NYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             HHHHHH-HhCCC-HHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHH
Confidence            888887 77775 677777776666655          36777777777777665432  23332222222222  3344


Q ss_pred             HHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHH
Q 005817          562 KLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNAR  641 (676)
Q Consensus       562 ~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR  641 (676)
                      ..+++++. ..|..     +......+..+...|++++|+..|++++...|.+..+...+..++....      ++.++.
T Consensus       664 ~~l~~AL~-l~P~~-----~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~------~~~~a~  731 (987)
T PRK09782        664 EMLERAHK-GLPDD-----PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF------NFRRLH  731 (987)
T ss_pred             HHHHHHHH-hCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH------HHHHHH
Confidence            45555554 33433     2233234445667788888888888888888887777777777776655      677888


Q ss_pred             HHHHHHHhhCC
Q 005817          642 KLFESALATYD  652 (676)
Q Consensus       642 ~lye~al~~~~  652 (676)
                      +-|.++..+.+
T Consensus       732 ~~~~r~~~~~~  742 (987)
T PRK09782        732 EEVGRRWTFSF  742 (987)
T ss_pred             HHHHHHhhcCc
Confidence            88888877765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.37  E-value=2.1e-09  Score=115.65  Aligned_cols=258  Identities=13%  Similarity=0.083  Sum_probs=188.1

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE  252 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~  252 (676)
                      .+.+...|.+++..+|+++.+|...+.... ..|+++.|..++++++...+... .....+...+..             
T Consensus        51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~La~-------------  115 (389)
T PRK11788         51 PDKAIDLFIEMLKVDPETVELHLALGNLFR-RRGEVDRAIRIHQNLLSRPDLTR-EQRLLALQELGQ-------------  115 (389)
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCcHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHH-------------
Confidence            578999999999999999999999999886 68899999999999998533321 111111000000             


Q ss_pred             ccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHH
Q 005817          253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR  332 (676)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~  332 (676)
                                                                       ..+..++++.|..+|+++++..|.+...+..
T Consensus       116 -------------------------------------------------~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  146 (389)
T PRK11788        116 -------------------------------------------------DYLKAGLLDRAEELFLQLVDEGDFAEGALQQ  146 (389)
T ss_pred             -------------------------------------------------HHHHCCCHHHHHHHHHHHHcCCcchHHHHHH
Confidence                                                             0001136788999999999887777666666


Q ss_pred             HHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh-----hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc
Q 005817          333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK-----YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV  407 (676)
Q Consensus       333 ~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~-----~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~  407 (676)
                      +..++..-   +..+.+...++.++...|.+..     .+..++..+..             .++++.|...|+++++..
T Consensus       147 la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------------~~~~~~A~~~~~~al~~~  210 (389)
T PRK11788        147 LLEIYQQE---KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA-------------RGDLDAARALLKKALAAD  210 (389)
T ss_pred             HHHHHHHh---chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHhHC
Confidence            65555432   3567888999999988877633     34456665544             477999999999999877


Q ss_pred             Cchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005817          408 PSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT-EDIAHRYVTLYLQLGKLDEARKLA  485 (676)
Q Consensus       408 ~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~-~~lw~~~~~l~~~~~~~~~A~~l~  485 (676)
                      |+.. .+.........                  .|++++|...|++++..+|.. ...+...+..+...|++++|...+
T Consensus       211 p~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l  272 (389)
T PRK11788        211 PQCVRASILLGDLALA------------------QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL  272 (389)
T ss_pred             cCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            7533 33333232222                  367899999999999887765 466778888999999999999999


Q ss_pred             HHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh
Q 005817          486 AKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (676)
Q Consensus       486 ~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~  540 (676)
                      ++++ ...|++... ...+.+....+          +.+++..+|+++++..|..
T Consensus       273 ~~~~-~~~p~~~~~-~~la~~~~~~g----------~~~~A~~~l~~~l~~~P~~  315 (389)
T PRK11788        273 RRAL-EEYPGADLL-LALAQLLEEQE----------GPEAAQALLREQLRRHPSL  315 (389)
T ss_pred             HHHH-HhCCCchHH-HHHHHHHHHhC----------CHHHHHHHHHHHHHhCcCH
Confidence            9999 778877544 66777776665          4789999999999987654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.36  E-value=1.1e-09  Score=128.18  Aligned_cols=279  Identities=10%  Similarity=-0.035  Sum_probs=204.8

Q ss_pred             HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005817          142 RILEIYRLAVMRFKG--DIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (676)
Q Consensus       142 ~~~~iyeral~~~p~--~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral  219 (676)
                      .+...+.+++...|+  +...|..+...+...+...+..+|.+++...|.+.. .+..+.... ..|+++.|...|++++
T Consensus       459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~-~~Gr~eeAi~~~rka~  536 (987)
T PRK09782        459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAY-QVEDYATALAAWQKIS  536 (987)
T ss_pred             hhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHH-HHHHHHHHH-HCCCHHHHHHHHHHHh
Confidence            345556666666677  888888888887764456788888888888887543 444444442 5778899999998887


Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhh
Q 005817          220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK  299 (676)
Q Consensus       220 ~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (676)
                      ...|.. ..|...+.....                                                             
T Consensus       537 ~~~p~~-~a~~~la~all~-------------------------------------------------------------  554 (987)
T PRK09782        537 LHDMSN-EDLLAAANTAQA-------------------------------------------------------------  554 (987)
T ss_pred             ccCCCc-HHHHHHHHHHHH-------------------------------------------------------------
Confidence            765553 334333322111                                                             


Q ss_pred             hhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccC
Q 005817          300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSV  379 (676)
Q Consensus       300 ~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~  379 (676)
                            .++.+.|...|+++++..|+...+...+   .......+..+.+...+++++...|+ +..|..+|..+..   
T Consensus       555 ------~Gd~~eA~~~l~qAL~l~P~~~~l~~~L---a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~---  621 (987)
T PRK09782        555 ------AGNGAARDRWLQQAEQRGLGDNALYWWL---HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ---  621 (987)
T ss_pred             ------CCCHHHHHHHHHHHHhcCCccHHHHHHH---HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH---
Confidence                  1356778999999999888775554432   22221124678899999999999996 8889999988765   


Q ss_pred             CCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC
Q 005817          380 SKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG  458 (676)
Q Consensus       380 ~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~  458 (676)
                                .++++.|...|++++...|... .+..+......                  .|..+.|+..|++|+..+
T Consensus       622 ----------lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~------------------~G~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        622 ----------RHNVPAAVSDLRAALELEPNNSNYQAALGYALWD------------------SGDIAQSREMLERAHKGL  673 (987)
T ss_pred             ----------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhC
Confidence                      5789999999999999988765 44333333332                  366899999999999999


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       459 p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      |.++.++...+..+...|++++|+..+++++ ...|++..+-..+..+.....          +++++.+.+.++...
T Consensus       674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al-~l~P~~a~i~~~~g~~~~~~~----------~~~~a~~~~~r~~~~  740 (987)
T PRK09782        674 PDDPALIRQLAYVNQRLDDMAATQHYARLVI-DDIDNQALITPLTPEQNQQRF----------NFRRLHEEVGRRWTF  740 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCchhhhhhhHHHHHHH----------HHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999 889999888888877776543          366666666666653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.35  E-value=1e-08  Score=118.77  Aligned_cols=429  Identities=11%  Similarity=0.050  Sum_probs=278.1

Q ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCCHHHHHHH
Q 005817          140 VARILEIYRLAVMR--FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARAL  214 (676)
Q Consensus       140 ~~~~~~iyeral~~--~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~--~P~~~~lW~~~a~~e~~~~~~~~~Ar~~  214 (676)
                      ...|..+|+.+...  ++-+...+...+..|.+.+ ...+..++..+...  .| ++..+-..+.... ..|+++.|+.+
T Consensus       103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~-k~g~~~~A~~l  180 (697)
T PLN03081        103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHV-KCGMLIDARRL  180 (697)
T ss_pred             HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHh-cCCCHHHHHHH
Confidence            56788899888764  3346778888888887776 45678888888774  45 5778888888775 78999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc
Q 005817          215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN  294 (676)
Q Consensus       215 ~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (676)
                      |++...  |+ ...|...+.-....+....+... +...                .+.+           ..++.     
T Consensus       181 f~~m~~--~~-~~t~n~li~~~~~~g~~~~A~~l-f~~M----------------~~~g-----------~~p~~-----  224 (697)
T PLN03081        181 FDEMPE--RN-LASWGTIIGGLVDAGNYREAFAL-FREM----------------WEDG-----------SDAEP-----  224 (697)
T ss_pred             HhcCCC--CC-eeeHHHHHHHHHHCcCHHHHHHH-HHHH----------------HHhC-----------CCCCh-----
Confidence            999854  43 46677777654443322222111 1100                0000           00000     


Q ss_pred             hhhhhhhhhH-HHhhhHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005817          295 MESQKSVDLF-REQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR  372 (676)
Q Consensus       295 ~~~~~~~~~~-~~~~~~~a~~iy~~Al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~  372 (676)
                      .-+...+..+ ..+....++.++..+++.. ..+...+..++++|.+.+   ..+.|..+++.+..   .+..+|..+..
T Consensus       225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g---~~~~A~~vf~~m~~---~~~vt~n~li~  298 (697)
T PLN03081        225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG---DIEDARCVFDGMPE---KTTVAWNSMLA  298 (697)
T ss_pred             hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC---CHHHHHHHHHhCCC---CChhHHHHHHH
Confidence            0000001111 1134566777777776643 234456777888887754   46788888887743   35678988888


Q ss_pred             HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhc--cCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817          373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN--VPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV  450 (676)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~--~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i  450 (676)
                      .+..             .++.++|..+|++..+.  .|+...+...+.....                  .+.++.+..+
T Consensus       299 ~y~~-------------~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~------------------~g~~~~a~~i  347 (697)
T PLN03081        299 GYAL-------------HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR------------------LALLEHAKQA  347 (697)
T ss_pred             HHHh-------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------------------ccchHHHHHH
Confidence            7765             47889999999988764  2333333332322222                  3668889999


Q ss_pred             HHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHH
Q 005817          451 YEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFEL  529 (676)
Q Consensus       451 ye~al~~~-p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~  529 (676)
                      ++..+..+ +.+..++...++++.+.|++++|..++++.. +  | +...|...|..+.+.|          +.+++.++
T Consensus       348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~--~-d~~t~n~lI~~y~~~G----------~~~~A~~l  413 (697)
T PLN03081        348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-R--K-NLISWNALIAGYGNHG----------RGTKAVEM  413 (697)
T ss_pred             HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-C--C-CeeeHHHHHHHHHHcC----------CHHHHHHH
Confidence            99998875 4566788889999999999999999999876 4  3 4567998888887776          37889999


Q ss_pred             HHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHh--hhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHH
Q 005817          530 LKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALIS--VAKDGGGESGFSLPSAIINLVIQKDGIQQAREMY  604 (676)
Q Consensus       530 f~~Al~~-~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy  604 (676)
                      |++.... +.++. . -+...+.-+...+  +....+|+.+...  +.|+      ...+...++.+.+.|.+++|.+++
T Consensus       414 f~~M~~~g~~Pd~-~-T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~------~~~y~~li~~l~r~G~~~eA~~~~  485 (697)
T PLN03081        414 FERMIAEGVAPNH-V-TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR------AMHYACMIELLGREGLLDEAYAMI  485 (697)
T ss_pred             HHHHHHhCCCCCH-H-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC------ccchHhHHHHHHhcCCHHHHHHHH
Confidence            9988764 33332 1 2333333232222  4455566655431  2222      223345677788899999999998


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCccc
Q 005817          605 KRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLL  673 (676)
Q Consensus       605 ~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~  673 (676)
                      +++-  ..++...|...+.--...+      +++.++.+++++++..|++...+...+..-.+.|..+.
T Consensus       486 ~~~~--~~p~~~~~~~Ll~a~~~~g------~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~  546 (697)
T PLN03081        486 RRAP--FKPTVNMWAALLTACRIHK------NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE  546 (697)
T ss_pred             HHCC--CCCCHHHHHHHHHHHHHcC------CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH
Confidence            8752  2345567877777666666      78899999999988888766677777777666676543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=6.2e-09  Score=106.79  Aligned_cols=224  Identities=16%  Similarity=0.124  Sum_probs=146.0

Q ss_pred             hHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 005817          391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVT  470 (676)
Q Consensus       391 ~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~  470 (676)
                      |+.-.|..-|+.+|+..|...  ..||..-.-+..               +++.++-...|.+|...+|.++++|.+=++
T Consensus       340 g~~~~a~~d~~~~I~l~~~~~--~lyI~~a~~y~d---------------~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ  402 (606)
T KOG0547|consen  340 GDSLGAQEDFDAAIKLDPAFN--SLYIKRAAAYAD---------------ENQSEKMWKDFNKAEDLDPENPDVYYHRGQ  402 (606)
T ss_pred             CCchhhhhhHHHHHhcCcccc--hHHHHHHHHHhh---------------hhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence            444556667777777665433  114433322210               233566777888888888888888888888


Q ss_pred             HHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHH
Q 005817          471 LYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMAL  550 (676)
Q Consensus       471 l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l  550 (676)
                      +..-.+++++|..=+++++ ...|.+.--+.+...+.-+++          .++++...|+.+..++|.-  ...+..++
T Consensus       403 m~flL~q~e~A~aDF~Kai-~L~pe~~~~~iQl~~a~Yr~~----------k~~~~m~~Fee~kkkFP~~--~Evy~~fA  469 (606)
T KOG0547|consen  403 MRFLLQQYEEAIADFQKAI-SLDPENAYAYIQLCCALYRQH----------KIAESMKTFEEAKKKFPNC--PEVYNLFA  469 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHh-hcChhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhCCCC--chHHHHHH
Confidence            8888888888888888888 788888766666665555554          3788888888888888742  33445444


Q ss_pred             HHHHhhh--HHHHHHHHHHHHhhhhCC-CC--CCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005817          551 KFFMNQK--HYFDKLVEIALISVAKDG-GG--ESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE  625 (676)
Q Consensus       551 ~~~~~~~--~~~~~~~~~a~~~~~~~~-~~--~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE  625 (676)
                      +.+...+  +.+.+-|++|+. +.|.. +.  ...+.+-...+.+-+ .+++..|.++..+|+++.|.+..-+..+.++|
T Consensus       470 eiLtDqqqFd~A~k~YD~ai~-LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~  547 (606)
T KOG0547|consen  470 EILTDQQQFDKAVKQYDKAIE-LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFE  547 (606)
T ss_pred             HHHhhHHhHHHHHHHHHHHHh-hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            5443332  233444555554 33321 00  001122212222222 37888999999999998888888888888998


Q ss_pred             hhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          626 NNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       626 ~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      .+++      ++++|-++||++...--
T Consensus       548 lQ~~------~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  548 LQRG------KIDEAIELFEKSAQLAR  568 (606)
T ss_pred             HHHh------hHHHHHHHHHHHHHHHH
Confidence            8888      88999999998887643

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.32  E-value=7.8e-08  Score=113.62  Aligned_cols=426  Identities=13%  Similarity=0.020  Sum_probs=268.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV--PGVWIYAAAWEFDHNLNVTAARALMQ  216 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~--~~lW~~~a~~e~~~~~~~~~Ar~~~~  216 (676)
                      ...+...+.+++...+.....-..|..++ +.| ...+.++|+.+.....-.  .-.+-...... ...|.+..|..+|.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~y~~l~-r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~-~~~g~~~eAl~lf~  430 (1060)
T PLN03218        353 EENSLAAYNGGVSGKRKSPEYIDAYNRLL-RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKAC-KKQRAVKEAFRFAK  430 (1060)
T ss_pred             hhhhHHHhccccCCCCCchHHHHHHHHHH-HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHCCCHHHHHHHHH
Confidence            34556677777766665444444444444 445 467888888887754322  22233333444 35678888888877


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817          217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME  296 (676)
Q Consensus       217 ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (676)
                      ....  |+ ...|...+......+....+++. +....+                .      .+     .+|.     .-
T Consensus       431 ~M~~--pd-~~Tyn~LL~a~~k~g~~e~A~~l-f~~M~~----------------~------Gl-----~pD~-----~t  474 (1060)
T PLN03218        431 LIRN--PT-LSTFNMLMSVCASSQDIDGALRV-LRLVQE----------------A------GL-----KADC-----KL  474 (1060)
T ss_pred             HcCC--CC-HHHHHHHHHHHHhCcCHHHHHHH-HHHHHH----------------c------CC-----CCCH-----HH
Confidence            6543  54 46666666544333222222211 111000                0      00     0000     00


Q ss_pred             hhhhhhhH-HHhhhHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcC-CCChhhHHHHHHH
Q 005817          297 SQKSVDLF-REQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF-LVDPKYWDWLARL  373 (676)
Q Consensus       297 ~~~~~~~~-~~~~~~~a~~iy~~Al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~-p~~~~~w~~la~~  373 (676)
                      +...+..+ ..++++.|..+|+...+.. ..+...|..++..|.+.+   ..+.+..+++.+.... .-+..+|..+...
T Consensus       475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G---~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a  551 (1060)
T PLN03218        475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG---QVAKAFGAYGIMRSKNVKPDRVVFNALISA  551 (1060)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            11112222 2357788999999988753 224567777777776643   5678888998887643 2235667777777


Q ss_pred             hccccCCCCCCCcCcchhHHHHHHHHHHHHhhc----cCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHH
Q 005817          374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN----VPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT  449 (676)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~----~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~  449 (676)
                      +..             .+++++|.++|++....    .|+...|...+...-+                  .|.+++|..
T Consensus       552 ~~k-------------~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k------------------~G~ldeA~e  600 (1060)
T PLN03218        552 CGQ-------------SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN------------------AGQVDRAKE  600 (1060)
T ss_pred             HHH-------------CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH------------------CCCHHHHHH
Confidence            654             46789999999998753    3444456555544333                  477999999


Q ss_pred             HHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHH
Q 005817          450 VYEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE  528 (676)
Q Consensus       450 iye~al~~~-p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~  528 (676)
                      +|+.....+ +.++..|...+..+.+.|++++|..++++.....+..+...|...+....+.+          +++++.+
T Consensus       601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G----------~~eeA~~  670 (1060)
T PLN03218        601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG----------DLDKAFE  670 (1060)
T ss_pred             HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------CHHHHHH
Confidence            999999886 45778999999999999999999999999884444556778888888887765          4889999


Q ss_pred             HHHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHh-hhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHH
Q 005817          529 LLKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALIS-VAKDGGGESGFSLPSAIINLVIQKDGIQQAREMY  604 (676)
Q Consensus       529 ~f~~Al~~-~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy  604 (676)
                      +|....+. ++++  ...|...+.-+.+.+  +.+..+|+.+... +.|+      ...+...+....+.|++++|.++|
T Consensus       671 l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd------vvtyN~LI~gy~k~G~~eeAlelf  742 (1060)
T PLN03218        671 ILQDARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT------VSTMNALITALCEGNQLPKALEVL  742 (1060)
T ss_pred             HHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99998865 3332  335666666665554  4566667665431 1222      122335677788899999999999


Q ss_pred             HHHHcC-CCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC-CCchHHHHH
Q 005817          605 KRFLAL-PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDY  661 (676)
Q Consensus       605 ~~al~~-~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~-~~~~lW~~y  661 (676)
                      +++... ..++...|...+..-...+      +++.|.++|+.+.+.-. .+..++...
T Consensus       743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G------~le~A~~l~~~M~k~Gi~pd~~tynsL  795 (1060)
T PLN03218        743 SEMKRLGLCPNTITYSILLVASERKD------DADVGLDLLSQAKEDGIKPNLVMCRCI  795 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            998653 3455666666666555556      89999999999988633 333444433

>TIGR00540 hemY_coli hemY protein

Probab=99.32  E-value=4e-09  Score=113.94  Aligned_cols=287  Identities=13%  Similarity=-0.017  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~-~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ...|.....++....|+..-..+.-++.....| .+.+...|.++++..|.+. .+-..++...+ ..|+.+.|+..+++
T Consensus       100 ~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al~~l~~  178 (409)
T TIGR00540       100 YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAARHGVDK  178 (409)
T ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence            566778888999888887766666677766666 5788999999999999875 57777888887 68899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      .++..|+++.++..+..+....+                                                         
T Consensus       179 l~~~~P~~~~~l~ll~~~~~~~~---------------------------------------------------------  201 (409)
T TIGR00540       179 LLEMAPRHKEVLKLAEEAYIRSG---------------------------------------------------------  201 (409)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHh---------------------------------------------------------
Confidence            99999999988877777665443                                                         


Q ss_pred             hhhhhhHHHhhhHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH-hcccCcHHHHHHHHHHHHhcCC----CChhhHHHHH
Q 005817          298 QKSVDLFREQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEA-TNLAQSDDMHDKILSDMQRDFL----VDPKYWDWLA  371 (676)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~Al~~~-p~~~~~~~~~~~~~~~-fe~~~~~~~a~~il~~~~~~~p----~~~~~w~~la  371 (676)
                                +.+.|...+....+.. ++..++...-...... +.. ...+.....+..+....|    +++.++..++
T Consensus       202 ----------d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~-~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a  270 (409)
T TIGR00540       202 ----------AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE-AMADEGIDGLLNWWKNQPRHRRHNIALKIALA  270 (409)
T ss_pred             ----------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHH
Confidence                      2333444444444431 1111110000000000 100 001111234445555555    6899999999


Q ss_pred             HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817          372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV  450 (676)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i  450 (676)
                      .....             .++.+.|..+++++++..|++. .....+..... +   .            .++...+...
T Consensus       271 ~~l~~-------------~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~-l---~------------~~~~~~~~~~  321 (409)
T TIGR00540       271 EHLID-------------CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR-L---K------------PEDNEKLEKL  321 (409)
T ss_pred             HHHHH-------------CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh-c---C------------CCChHHHHHH
Confidence            98865             5789999999999999888754 11000110111 1   0            2446788999


Q ss_pred             HHHHHHcCCCcH--HHHHHHHHHHHhcCCHHHHHHHHH--HHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHH
Q 005817          451 YEKAEAMGCLTE--DIAHRYVTLYLQLGKLDEARKLAA--KLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSI  526 (676)
Q Consensus       451 ye~al~~~p~~~--~lw~~~~~l~~~~~~~~~A~~l~~--~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~  526 (676)
                      +++++..+|.++  .+...++.++.+.|++++|++.++  .++ +..|++.. +..++.+..+.|+          .+++
T Consensus       322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~-~~~La~ll~~~g~----------~~~A  389 (409)
T TIGR00540       322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDAND-LAMAADAFDQAGD----------KAEA  389 (409)
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHH-HHHHHHHHHHcCC----------HHHH
Confidence            999999999999  888899999999999999999999  577 67888776 4477888887764          6888


Q ss_pred             HHHHHHHHhh
Q 005817          527 FELLKCILTK  536 (676)
Q Consensus       527 ~~~f~~Al~~  536 (676)
                      .++|++++..
T Consensus       390 ~~~~~~~l~~  399 (409)
T TIGR00540       390 AAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHHHH
Confidence            9999998864

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=2.6e-09  Score=109.43  Aligned_cols=342  Identities=9%  Similarity=-0.017  Sum_probs=228.3

Q ss_pred             HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCC---
Q 005817          305 REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK---  381 (676)
Q Consensus       305 ~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~---  381 (676)
                      ..+.++.|...|..||+..|+.+-|+...--.|...   +..+.+.+....+++..|+...+.+..|..+-..++..   
T Consensus       127 ~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~l---gd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal  203 (606)
T KOG0547|consen  127 RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESL---GDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL  203 (606)
T ss_pred             hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHH---hhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence            456789999999999999999777777654444443   34566677777888999999888887777653321110   


Q ss_pred             CCCCc------------CcchhH--HHHHHHHHHHHhh-----ccCchhHHHHHHHHHHHHh-----cCcc-ccccC---
Q 005817          382 DGTSE------------DIVPSQ--MQKAIQVYEEALK-----NVPSSMIFDLYTKFLMDMI-----APKK-EETRD---  433 (676)
Q Consensus       382 ~~~~~------------~~~~~~--~~~A~~~ye~al~-----~~~~~~lw~~y~~~~~~~~-----~~~~-~d~~~---  433 (676)
                      ..+.+            .-...+  -..|....++.++     .+|+......|...-....     .... .|..+   
T Consensus       204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~  283 (606)
T KOG0547|consen  204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA  283 (606)
T ss_pred             HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence            00000            000000  1234444455554     1233222222211100000     0000 00000   


Q ss_pred             -----------------------------CCCC-------------------hhhhhhHHHHHHHHHHHHHcCCCcHHHH
Q 005817          434 -----------------------------SELP-------------------SHVEHYISHLLTVYEKAEAMGCLTEDIA  465 (676)
Q Consensus       434 -----------------------------~~~~-------------------~~~~~~~~~a~~iye~al~~~p~~~~lw  465 (676)
                                                   ..+.                   ....|+...+..-+..+|..+|..+.+|
T Consensus       284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~ly  363 (606)
T KOG0547|consen  284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLY  363 (606)
T ss_pred             HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHH
Confidence                                         0000                   0133567788899999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHH
Q 005817          466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESL  545 (676)
Q Consensus       466 ~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~l  545 (676)
                      +..+.++...++.++-.+.+.+|. ...|.+++++..+.++..-.+          +++++..=|++|+..-|.....-+
T Consensus       364 I~~a~~y~d~~~~~~~~~~F~~A~-~ldp~n~dvYyHRgQm~flL~----------q~e~A~aDF~Kai~L~pe~~~~~i  432 (606)
T KOG0547|consen  364 IKRAAAYADENQSEKMWKDFNKAE-DLDPENPDVYYHRGQMRFLLQ----------QYEEAIADFQKAISLDPENAYAYI  432 (606)
T ss_pred             HHHHHHHhhhhccHHHHHHHHHHH-hcCCCCCchhHhHHHHHHHHH----------HHHHHHHHHHHHhhcChhhhHHHH
Confidence            999999999999999999999999 899999999999999887655          478888889999986654321112


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC------C--HHH
Q 005817          546 WLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP------G--LVL  617 (676)
Q Consensus       546 W~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~------~--~~l  617 (676)
                      -..++.|-...-....+.|+.+.+.++.      ++.....|++.+..++++++|.+.|.+|+.+.|.      +  +-+
T Consensus       433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV  506 (606)
T KOG0547|consen  433 QLCCALYRQHKIAESMKTFEEAKKKFPN------CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV  506 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCC------CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence            1122222222224456677777765532      4577778899999999999999999999998776      3  235


Q ss_pred             HHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCccc
Q 005817          618 YQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLL  673 (676)
Q Consensus       618 ~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~  673 (676)
                      ....+.+-+. +      ++++|-.|.++|++..|.+..-....++||...|+.+.
T Consensus       507 ~Ka~l~~qwk-~------d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e  555 (606)
T KOG0547|consen  507 HKALLVLQWK-E------DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE  555 (606)
T ss_pred             hhhHhhhchh-h------hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence            5555555544 3      89999999999999999988999999999999988764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.30  E-value=2.8e-07  Score=106.09  Aligned_cols=438  Identities=14%  Similarity=0.051  Sum_probs=255.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|...|+++++..|.+......++.+....| ...+...+++++.-.|.....-...|.... ..|+++.|..+|+++
T Consensus        50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aiely~ka  128 (822)
T PRK14574         50 TAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALALWQSS  128 (822)
T ss_pred             HHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            458899999999999998533337777776667 578999999999444444555554466664 678999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (676)
                      ++..|+++.++...+.......+...+...+.. ..   ..+|             ..                  ... 
T Consensus       129 L~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~-l~---~~dp-------------~~------------------~~~-  172 (822)
T PRK14574        129 LKKDPTNPDLISGMIMTQADAGRGGVVLKQATE-LA---ERDP-------------TV------------------QNY-  172 (822)
T ss_pred             HhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH-hc---ccCc-------------ch------------------HHH-
Confidence            999999999997655444333222222111111 00   0001             00                  000 


Q ss_pred             hhhhhHH--HhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh--
Q 005817          299 KSVDLFR--EQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK--  374 (676)
Q Consensus       299 ~~~~~~~--~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~--  374 (676)
                      .....+.  .++...|..+|+++++..|++.++...++..+.....   ...+......-...|......|+.....-  
T Consensus       173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~---~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~  249 (822)
T PRK14574        173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI---VEPALRLAKENPNLVSAEHYRQLERDAAAEQ  249 (822)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHhCccccCHHHHHHHHHHHHHHH
Confidence            0011111  1233359999999999999998888887776665542   23444444332222222333343222211  


Q ss_pred             ccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc---Cchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817          375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV---PSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV  450 (676)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~---~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i  450 (676)
                      +.... ..+....+.....++|..-++..+...   |... .|   .......+..           ....+....++..
T Consensus       250 vr~a~-~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~---~~~~~Drl~a-----------L~~r~r~~~vi~~  314 (822)
T PRK14574        250 VRMAV-LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADY---QRARIDRLGA-----------LLVRHQTADLIKE  314 (822)
T ss_pred             Hhhcc-cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHH---HHHHHHHHHH-----------HHHhhhHHHHHHH
Confidence            11000 000011122334677888888888744   3322 33   2222221100           0124667889999


Q ss_pred             HHHHHHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC------CChHHHHHHHHHHHHHhccccCCCCChhch
Q 005817          451 YEKAEAMGCL-TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL------SDSVQLWLLRISVEIRCVTRNSFSPSKADI  523 (676)
Q Consensus       451 ye~al~~~p~-~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~------P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~  523 (676)
                      |+........ -+-+-...++.++..+.+++|..+|..++ ...      |.+...-......+...+          .+
T Consensus       315 y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~-~~~~~~~~~~~~~~~~~~L~yA~ld~e----------~~  383 (822)
T PRK14574        315 YEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY-YSDGKTFRNSDDLLDADDLYYSLNESE----------QL  383 (822)
T ss_pred             HHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh-hccccccCCCcchHHHHHHHHHHHhcc----------cH
Confidence            9987655422 22344446788889999999999999998 533      112211111111111122          46


Q ss_pred             HHHHHHHHHHHhhcChh---------hhHHHHHH----HHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHH
Q 005817          524 LSIFELLKCILTKVSAL---------ESESLWLM----ALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAII  588 (676)
Q Consensus       524 ~~~~~~f~~Al~~~~~~---------~~~~lW~~----~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~  588 (676)
                      +++..++++.....|..         ..-+=|..    .+..+.-.+  ..+++.++..+. ..|.+     ..+...++
T Consensus       384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~-~aP~n-----~~l~~~~A  457 (822)
T PRK14574        384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS-TAPAN-----QNLRIALA  457 (822)
T ss_pred             HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHH
Confidence            77877877777643310         00011221    122222111  345666666543 45655     35555788


Q ss_pred             HHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc
Q 005817          589 NLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT  655 (676)
Q Consensus       589 ~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~  655 (676)
                      +.+...|...+|.++++.+..+.|.+..+....+.--..++      +...|.++-..+++.+|+++
T Consensus       458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~------e~~~A~~~~~~l~~~~Pe~~  518 (822)
T PRK14574        458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ------EWHQMELLTDDVISRSPEDI  518 (822)
T ss_pred             HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh------hHHHHHHHHHHHHhhCCCch
Confidence            88999999999999999999888888776655554444555      89999999999999999554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=99.26  E-value=8.6e-11  Score=119.46  Aligned_cols=145  Identities=20%  Similarity=0.379  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817          160 LWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELT  238 (676)
Q Consensus       160 lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~  238 (676)
                      +|..|++|+++.+ .+.+|.+|.+|+...+....+|+.+|.+|+..+++.+.|+.+|++|++..|.+..+|..|+.|+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            6999999988764 678899999998666667899999999988657788889999999999999999999999988764


Q ss_pred             HHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHH
Q 005817          239 YLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSG  318 (676)
Q Consensus       239 ~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~  318 (676)
                      .                                                                   ++.+.||.+|++
T Consensus        83 ~-------------------------------------------------------------------~d~~~aR~lfer   95 (280)
T PF05843_consen   83 L-------------------------------------------------------------------NDINNARALFER   95 (280)
T ss_dssp             T-------------------------------------------------------------------T-HHHHHHHHHH
T ss_pred             h-------------------------------------------------------------------CcHHHHHHHHHH
Confidence            2                                                                   134678999999


Q ss_pred             HHhcCCCch---hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 005817          319 AVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK  374 (676)
Q Consensus       319 Al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~  374 (676)
                      ++..+|...   .+|..|+++...++   ..+.+.++..++...+|++..++....++.
T Consensus        96 ~i~~l~~~~~~~~iw~~~i~fE~~~G---dl~~v~~v~~R~~~~~~~~~~~~~f~~ry~  151 (280)
T PF05843_consen   96 AISSLPKEKQSKKIWKKFIEFESKYG---DLESVRKVEKRAEELFPEDNSLELFSDRYS  151 (280)
T ss_dssp             HCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-HHHHHHCCT-
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            998887754   47777766655554   456788888899999998777665444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=99.25  E-value=1.4e-10  Score=117.88  Aligned_cols=111  Identities=17%  Similarity=0.248  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHhh
Q 005817          412 IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ-LGKLDEARKLAAKLCS  490 (676)
Q Consensus       412 lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~-~~~~~~A~~l~~~al~  490 (676)
                      .|..|++|..+.                  +.++.||.+|++|+...+.+..+|..+|.++.. .++.+.|.+||+.++ 
T Consensus         3 v~i~~m~~~~r~------------------~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl-   63 (280)
T PF05843_consen    3 VWIQYMRFMRRT------------------EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL-   63 (280)
T ss_dssp             HHHHHHHHHHHH------------------HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHh------------------CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-
Confidence            688999988873                  448999999999997767789999999999998 566777999999999 


Q ss_pred             ccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh-hHHHHHHHHH
Q 005817          491 GKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-SESLWLMALK  551 (676)
Q Consensus       491 ~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~-~~~lW~~~l~  551 (676)
                      +.+|.+..+|..|+++++..+          +.+.+|.+|++++..++... +..||..|++
T Consensus        64 k~f~~~~~~~~~Y~~~l~~~~----------d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~  115 (280)
T PF05843_consen   64 KKFPSDPDFWLEYLDFLIKLN----------DINNARALFERAISSLPKEKQSKKIWKKFIE  115 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHHHTT-----------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            899999999999999999875          58999999999999988765 5556655554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03077 Protein ECB2; Provisional

Probab=99.24  E-value=6.5e-08  Score=114.89  Aligned_cols=432  Identities=8%  Similarity=-0.019  Sum_probs=276.2

Q ss_pred             hhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCCHHHHHH
Q 005817          138 SGVARILEIYRLAVMR--FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH-PKVPGVWIYAAAWEFDHNLNVTAARA  213 (676)
Q Consensus       138 ~~~~~~~~iyeral~~--~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~-P~~~~lW~~~a~~e~~~~~~~~~Ar~  213 (676)
                      +....+..+|+++...  .| |...+...+.-|...+ ...+.+++..++..- +-+...|-..+.... ..|+++.|+.
T Consensus       267 g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~  344 (857)
T PLN03077        267 GECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL-SLGSWGEAEK  344 (857)
T ss_pred             CCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH-hcCCHHHHHH
Confidence            4577889999998765  45 5566677777777766 467888998888752 235778888888875 6889999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817          214 LMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE  293 (676)
Q Consensus       214 ~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (676)
                      +|++...  | +...|...+.-....+....+.. ++..-.                +.      .     -.|+.    
T Consensus       345 vf~~m~~--~-d~~s~n~li~~~~~~g~~~~A~~-lf~~M~----------------~~------g-----~~Pd~----  389 (857)
T PLN03077        345 VFSRMET--K-DAVSWTAMISGYEKNGLPDKALE-TYALME----------------QD------N-----VSPDE----  389 (857)
T ss_pred             HHhhCCC--C-CeeeHHHHHHHHHhCCCHHHHHH-HHHHHH----------------Hh------C-----CCCCc----
Confidence            9998643  3 35678888776554332222211 111000                00      0     00110    


Q ss_pred             chhhhhhhhhH-HHhhhHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005817          294 NMESQKSVDLF-REQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA  371 (676)
Q Consensus       294 ~~~~~~~~~~~-~~~~~~~a~~iy~~Al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la  371 (676)
                       .-+...+..+ ..++++.|..+++.+++.. ..+...+..++++|.+.+   ..+.|..+++++...   +..+|..+.
T Consensus       390 -~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g---~~~~A~~vf~~m~~~---d~vs~~~mi  462 (857)
T PLN03077        390 -ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK---CIDKALEVFHNIPEK---DVISWTSII  462 (857)
T ss_pred             -eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC---CHHHHHHHHHhCCCC---CeeeHHHHH
Confidence             0011111111 2357788999999998864 234567778888887764   567899999887542   456788887


Q ss_pred             HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch-hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817          372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV  450 (676)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~-~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i  450 (676)
                      .-+..             .++.++|..+|++.+..++.+ ..+...+.-+-.                  .|.++.+..+
T Consensus       463 ~~~~~-------------~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~------------------~g~l~~~~~i  511 (857)
T PLN03077        463 AGLRL-------------NNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR------------------IGALMCGKEI  511 (857)
T ss_pred             HHHHH-------------CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh------------------hchHHHhHHH
Confidence            76654             467899999999998764433 233333332222                  3567888888


Q ss_pred             HHHHHHcCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHH
Q 005817          451 YEKAEAMGC-LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFEL  529 (676)
Q Consensus       451 ye~al~~~p-~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~  529 (676)
                      +..++..+. .+..++-..++++.+.|++++|..+++..     +.+...|...|..+.+.|.          .+++.++
T Consensus       512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~----------~~~A~~l  576 (857)
T PLN03077        512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGK----------GSMAVEL  576 (857)
T ss_pred             HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCC----------HHHHHHH
Confidence            888887643 34455667888888999999998888764     4567788888888877764          7888888


Q ss_pred             HHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHH
Q 005817          530 LKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKR  606 (676)
Q Consensus       530 f~~Al~~-~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~  606 (676)
                      |++.... +.|+ ...+. ..+.-+...+  +....+|+.+....    +..+....+...++.+.+.|.+++|.+++++
T Consensus       577 f~~M~~~g~~Pd-~~T~~-~ll~a~~~~g~v~ea~~~f~~M~~~~----gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        577 FNRMVESGVNPD-EVTFI-SLLCACSRSGMVTQGLEYFHSMEEKY----SITPNLKHYACVVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             HHHHHHcCCCCC-cccHH-HHHHHHhhcChHHHHHHHHHHHHHHh----CCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            8887754 3332 22222 2222222222  34455566554211    1101123334557778888999999998887


Q ss_pred             HHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCccc
Q 005817          607 FLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLL  673 (676)
Q Consensus       607 al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~  673 (676)
                      .-  ..++...|...+.--...+      +.+.+....+++++..|+++..+......-...|.++.
T Consensus       651 m~--~~pd~~~~~aLl~ac~~~~------~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~  709 (857)
T PLN03077        651 MP--ITPDPAVWGALLNACRIHR------HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE  709 (857)
T ss_pred             CC--CCCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence            52  2345667777776544445      77888888888888888877777777776666666553

>TIGR00540 hemY_coli hemY protein

Probab=99.21  E-value=6.2e-08  Score=104.71  Aligned_cols=258  Identities=11%  Similarity=-0.006  Sum_probs=161.3

Q ss_pred             hhHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817          308 GLRVLQTIYSGAVEALPSSF-NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE  386 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~p~~~-~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~  386 (676)
                      +.+.|...|.++.+..|++. .+......+...   .+..+.+...++.+.+..|+++.++..++..++.          
T Consensus       133 ~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~---~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~----------  199 (409)
T TIGR00540       133 DEARANQHLEEAAELAGNDNILVEIARTRILLA---QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR----------  199 (409)
T ss_pred             CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------
Confidence            56778888888888877763 233222222221   2357788999999999999999998888888876          


Q ss_pred             CcchhHHHHHHHHHHHHhhcc-CchhHH-HHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC----C
Q 005817          387 DIVPSQMQKAIQVYEEALKNV-PSSMIF-DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC----L  460 (676)
Q Consensus       387 ~~~~~~~~~A~~~ye~al~~~-~~~~lw-~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p----~  460 (676)
                         .++++.|...+++.++.. .+..-. ..-.......+.               .+..+.....+..+....|    .
T Consensus       200 ---~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~---------------~~~~~~~~~~L~~~~~~~p~~~~~  261 (409)
T TIGR00540       200 ---SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD---------------EAMADEGIDGLLNWWKNQPRHRRH  261 (409)
T ss_pred             ---HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---------------HHHHhcCHHHHHHHHHHCCHHHhC
Confidence               588999999999988763 222211 000011111000               1112233446666666666    5


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh
Q 005817          461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (676)
Q Consensus       461 ~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~  540 (676)
                      ++.++..++..+...|++++|.+++++++ +..|++.......+.......      |  ++.+.+.+.++++++..|  
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l-~~~pd~~~~~~~~l~~~~~l~------~--~~~~~~~~~~e~~lk~~p--  330 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGL-KKLGDDRAISLPLCLPIPRLK------P--EDNEKLEKLIEKQAKNVD--  330 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHH-hhCCCcccchhHHHHHhhhcC------C--CChHHHHHHHHHHHHhCC--
Confidence            89999999999999999999999999999 888988653211111111111      0  123444444444443332  


Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHH--HHcCCCCCHHHH
Q 005817          541 ESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKR--FLALPRPGLVLY  618 (676)
Q Consensus       541 ~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~--al~~~p~~~~l~  618 (676)
                                                       ++.   ...+...++....+.|++++|++.|++  +++..|.... +
T Consensus       331 ---------------------------------~~~---~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~  373 (409)
T TIGR00540       331 ---------------------------------DKP---KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-L  373 (409)
T ss_pred             ---------------------------------CCh---hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-H
Confidence                                             220   002232455556778888888888884  5555554444 4


Q ss_pred             HHHHHHHhhccCCCCccchHHHHHHHHHHHhh
Q 005817          619 QNCIELENNLASVGDKDSLVNARKLFESALAT  650 (676)
Q Consensus       619 ~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~  650 (676)
                      .....+....|      +.+.|+++|++++..
T Consensus       374 ~~La~ll~~~g------~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       374 AMAADAFDQAG------DKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHHHcC------CHHHHHHHHHHHHHH
Confidence            47777777777      778888888888664

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.20  E-value=4.5e-08  Score=105.26  Aligned_cols=282  Identities=13%  Similarity=0.022  Sum_probs=190.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcc-CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          142 RILEIYRLAVMRFKGDIELW-FKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       142 ~~~~iyeral~~~p~~~~lW-~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~-~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      .+.....++-...+ ...+- ..-+......| .+.+...|.++....|+.. ...+..+.... ..|+.+.|...++++
T Consensus       102 ~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~  179 (398)
T PRK10747        102 QVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKL  179 (398)
T ss_pred             HHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence            45544444443322 12332 33333434455 5788999999999999864 33445567775 678999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (676)
                      ++..|+++.+....+......+                                                          
T Consensus       180 ~~~~P~~~~al~ll~~~~~~~g----------------------------------------------------------  201 (398)
T PRK10747        180 LEVAPRHPEVLRLAEQAYIRTG----------------------------------------------------------  201 (398)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHH----------------------------------------------------------
Confidence            9999999877666665554332                                                          


Q ss_pred             hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHH-----HHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 005817          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ-----RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARL  373 (676)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~-----~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~  373 (676)
                               +.+.|..++....+..+.+.+-..     .+..+...-......+....+.+.+.+..|+++.++..+|+.
T Consensus       202 ---------dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~  272 (398)
T PRK10747        202 ---------AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH  272 (398)
T ss_pred             ---------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence                     334444455544443322211111     111111110001123445556666666778899999999998


Q ss_pred             hccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817          374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (676)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~  453 (676)
                      .+.             .++.+.|..+.+++++.-+...+...|....                    .++.+++....++
T Consensus       273 l~~-------------~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~--------------------~~~~~~al~~~e~  319 (398)
T PRK10747        273 LIE-------------CDDHDTAQQIILDGLKRQYDERLVLLIPRLK--------------------TNNPEQLEKVLRQ  319 (398)
T ss_pred             HHH-------------CCCHHHHHHHHHHHHhcCCCHHHHHHHhhcc--------------------CCChHHHHHHHHH
Confidence            876             5788999999999999655555555554421                    2457889999999


Q ss_pred             HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHH
Q 005817          454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI  533 (676)
Q Consensus       454 al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~A  533 (676)
                      .+..+|.++++.+.++.+..+.+++++|+..+++++ +..|++.. +..+..++...|          +.+++.++|+++
T Consensus       320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al-~~~P~~~~-~~~La~~~~~~g----------~~~~A~~~~~~~  387 (398)
T PRK10747        320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL-KQRPDAYD-YAWLADALDRLH----------KPEEAAAMRRDG  387 (398)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCHHH-HHHHHHHHHHcC----------CHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 88898765 344566666665          378889999999


Q ss_pred             Hhhc
Q 005817          534 LTKV  537 (676)
Q Consensus       534 l~~~  537 (676)
                      +..+
T Consensus       388 l~~~  391 (398)
T PRK10747        388 LMLT  391 (398)
T ss_pred             Hhhh
Confidence            8754

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.17  E-value=6.1e-08  Score=112.36  Aligned_cols=408  Identities=9%  Similarity=0.037  Sum_probs=262.4

Q ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMR-FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       140 ~~~~~~iyeral~~-~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ...+..++..+... +..+...+...+..+.+.| .+.+.++|+++..  | +...|-..+.-.. ..|+++.|..+|++
T Consensus       139 ~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~-~~g~~~~A~~lf~~  214 (697)
T PLN03081        139 IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLV-DAGNYREAFALFRE  214 (697)
T ss_pred             HHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHH-HCcCHHHHHHHHHH
Confidence            34556677766653 3447889999999988877 4789999998854  4 4677888887775 67899999999999


Q ss_pred             HHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817          218 GLRVCPT-SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME  296 (676)
Q Consensus       218 al~~~p~-~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (676)
                      .++..+. +...+...++.....+....++ .+.+...+                      ..+     .+|.     .-
T Consensus       215 M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~-~l~~~~~~----------------------~g~-----~~d~-----~~  261 (697)
T PLN03081        215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQ-QLHCCVLK----------------------TGV-----VGDT-----FV  261 (697)
T ss_pred             HHHhCCCCChhhHHHHHHHHhcCCcHHHHH-HHHHHHHH----------------------hCC-----Cccc-----ee
Confidence            9876532 2345555554332211111111 01110000                      000     0000     00


Q ss_pred             hhhhhhhH-HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcC-CCChhhHHHHHHHh
Q 005817          297 SQKSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF-LVDPKYWDWLARLK  374 (676)
Q Consensus       297 ~~~~~~~~-~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~-p~~~~~w~~la~~~  374 (676)
                      +...+..+ ..+.++.|..+|+...   +.+...|..++..|.+.   +..+.+..+++++...- .-+..++..+...+
T Consensus       262 ~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~---g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~  335 (697)
T PLN03081        262 SCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALH---GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF  335 (697)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            11112222 2357889999998653   23456677777776654   35678999999987642 22345666666665


Q ss_pred             ccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc--CchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHH
Q 005817          375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV--PSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE  452 (676)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~--~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye  452 (676)
                      ..             .+.++.|.++++..++.-  |+...+...++...+                  .|.++.|..+|+
T Consensus       336 ~~-------------~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k------------------~G~~~~A~~vf~  384 (697)
T PLN03081        336 SR-------------LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK------------------WGRMEDARNVFD  384 (697)
T ss_pred             Hh-------------ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH------------------CCCHHHHHHHHH
Confidence            44             467899999999998763  222345444443333                  377899999999


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHH
Q 005817          453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC  532 (676)
Q Consensus       453 ~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~  532 (676)
                      +...   .+...|...+.-+.+.|+.++|..++++........+...+...+....+.|          .++++.++|+.
T Consensus       385 ~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g----------~~~~a~~~f~~  451 (697)
T PLN03081        385 RMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG----------LSEQGWEIFQS  451 (697)
T ss_pred             hCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC----------cHHHHHHHHHH
Confidence            8654   2455799999999999999999999999874444445566777776666555          48999999999


Q ss_pred             HHhh--cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005817          533 ILTK--VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL  608 (676)
Q Consensus       533 Al~~--~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al  608 (676)
                      ..+.  +.+.  ...|...++.+.+.+  +.+.++++.+-  +.|+      ...+...+.-....|+++.|+.++++++
T Consensus       452 m~~~~g~~p~--~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~  521 (697)
T PLN03081        452 MSENHRIKPR--AMHYACMIELLGREGLLDEAYAMIRRAP--FKPT------VNMWAALLTACRIHKNLELGRLAAEKLY  521 (697)
T ss_pred             HHHhcCCCCC--ccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            8753  2222  223555556665554  23333333210  1111      1223345555667899999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh
Q 005817          609 ALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT  650 (676)
Q Consensus       609 ~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~  650 (676)
                      ...|.+...|...+.+....|      .++.|.++++..-+.
T Consensus       522 ~~~p~~~~~y~~L~~~y~~~G------~~~~A~~v~~~m~~~  557 (697)
T PLN03081        522 GMGPEKLNNYVVLLNLYNSSG------RQAEAAKVVETLKRK  557 (697)
T ss_pred             CCCCCCCcchHHHHHHHHhCC------CHHHHHHHHHHHHHc
Confidence            988888777888888877777      889999999987764

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=99.16  E-value=1.8e-08  Score=109.57  Aligned_cols=262  Identities=11%  Similarity=0.112  Sum_probs=166.6

Q ss_pred             hHHHHHHHHHHHHhhccCc-----hhHHHHHHHHHHHHhcCcccccc-----------C------------C-CCCh---
Q 005817          391 SQMQKAIQVYEEALKNVPS-----SMIFDLYTKFLMDMIAPKKEETR-----------D------------S-ELPS---  438 (676)
Q Consensus       391 ~~~~~A~~~ye~al~~~~~-----~~lw~~y~~~~~~~~~~~~~d~~-----------~------------~-~~~~---  438 (676)
                      +.++.++.+|++|+..+..     ..+|..|..|+..++.....+..           +            + ++..   
T Consensus       204 ~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~  283 (881)
T KOG0128|consen  204 EDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVE  283 (881)
T ss_pred             ccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHH
Confidence            4578888899999887543     34899999988866532111100           0            0 0100   


Q ss_pred             --h---hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccc
Q 005817          439 --H---VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR  513 (676)
Q Consensus       439 --~---~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~  513 (676)
                        .   ......+.+..+++.++..|.-...|..|++++...|.+-.-..++++++ ...+.+..+|..|..+.-..-  
T Consensus       284 ~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~-~E~~~~~~~wi~y~~~~d~eL--  360 (881)
T KOG0128|consen  284 TKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV-AEMVLDRALWIGYGVYLDTEL--  360 (881)
T ss_pred             hccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HhccccHHHHhhhhhhccccc--
Confidence              0   11223455566777777777777889999999999999998888999999 778888999999875442210  


Q ss_pred             cCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHH
Q 005817          514 NSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ  593 (676)
Q Consensus       514 ~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~  593 (676)
                        .     -.+.+..++-+|++.||-  ...+|..++-=+++.+....-++......++..      ..+...|+.+..+
T Consensus       361 --k-----v~~~~~~~~~ra~R~cp~--tgdL~~rallAleR~re~~~vI~~~l~~~ls~~------~~l~~~~~~~rr~  425 (881)
T KOG0128|consen  361 --K-----VPQRGVSVHPRAVRSCPW--TGDLWKRALLALERNREEITVIVQNLEKDLSMT------VELHNDYLAYRRR  425 (881)
T ss_pred             --c-----cccccccccchhhcCCch--HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence              0     123444557788888874  366898766434444433222322222111111      1122223333222


Q ss_pred             h------cCHHHHHHHHHHHHc-------C-CCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc-hHH
Q 005817          594 K------DGIQQAREMYKRFLA-------L-PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-SLW  658 (676)
Q Consensus       594 ~------g~~~~Ar~iy~~al~-------~-~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~-~lW  658 (676)
                      .      .+++.-|+.|..|..       . -.+...+..-++++|..++.     +++.+|.+...-+...+.+. ..|
T Consensus       426 ~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~-----nmd~~R~iWn~imty~~~~iag~W  500 (881)
T KOG0128|consen  426 CTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLK-----NMDKAREIWNFIMTYGGGSIAGKW  500 (881)
T ss_pred             hcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh-----chhhhhHhhhccccCCcchHHHHH
Confidence            2      234555666666632       2 23456688889999988762     89999999998888655454 499


Q ss_pred             HHHHHHHhhcCCcccCC
Q 005817          659 RDYYSTETKVSFSLLCF  675 (676)
Q Consensus       659 ~~y~~fE~~~G~~~~~~  675 (676)
                      +.|+++|..||+..+|+
T Consensus       501 le~~~lE~~~g~~~~~R  517 (881)
T KOG0128|consen  501 LEAINLEREYGDGPSAR  517 (881)
T ss_pred             HHHHhHHHHhCCchhHH
Confidence            99999999999999885

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=7.3e-08  Score=100.92  Aligned_cols=256  Identities=13%  Similarity=0.097  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      .+....|.+..+..+|.......-+|.-+...| ..++-.+=-+.+..+|.++--|+..+-+.+ .-|++..||+.|-++
T Consensus       260 f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl-~i~k~seARry~SKa  338 (611)
T KOG1173|consen  260 FKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL-MIGKYSEARRYFSKA  338 (611)
T ss_pred             HHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH-HhcCcHHHHHHHHHH
Confidence            445567889999999999888877777444445 356667777889999999999999999987 678999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (676)
                      ....|.-...|+.|+.--...                                                           
T Consensus       339 t~lD~~fgpaWl~fghsfa~e-----------------------------------------------------------  359 (611)
T KOG1173|consen  339 TTLDPTFGPAWLAFGHSFAGE-----------------------------------------------------------  359 (611)
T ss_pred             hhcCccccHHHHHHhHHhhhc-----------------------------------------------------------
Confidence            999999999999998642211                                                           


Q ss_pred             hhhhhHHHhhhHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817          299 KSVDLFREQGLRVLQTIYSGAVEALPSSF--NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (676)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~--~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~  376 (676)
                              +.-++|...|..|-+..|+..  -++.     .-+|...++.+.+++.+.++...+|.+|-+...++-..+.
T Consensus       360 --------~EhdQAmaaY~tAarl~~G~hlP~LYl-----gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~  426 (611)
T KOG1173|consen  360 --------GEHDQAMAAYFTAARLMPGCHLPSLYL-----GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT  426 (611)
T ss_pred             --------chHHHHHHHHHHHHHhccCCcchHHHH-----HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh
Confidence                    123578888999988887752  2221     2244444578899999999999999999988777765543


Q ss_pred             ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc---hh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHH
Q 005817          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS---SM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE  452 (676)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~---~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye  452 (676)
                                   .+.+.+|...|+.++..+++   +. .|.--..-. ...             .-..+.++.|+..|+
T Consensus       427 -------------~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL-GH~-------------~Rkl~~~~eAI~~~q  479 (611)
T KOG1173|consen  427 -------------YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL-GHA-------------YRKLNKYEEAIDYYQ  479 (611)
T ss_pred             -------------HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH-HHH-------------HHHHhhHHHHHHHHH
Confidence                         46789999999999965442   22 243211110 000             012466889999999


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817          453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (676)
Q Consensus       453 ~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (676)
                      +|+...|.+++.+..-+-.+...|+++.|...+.+|+ ..-|++
T Consensus       480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL-~l~p~n  522 (611)
T KOG1173|consen  480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL-ALKPDN  522 (611)
T ss_pred             HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH-hcCCcc
Confidence            9999999999999999999999999999999999999 888876

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.13  E-value=1.9e-06  Score=99.31  Aligned_cols=394  Identities=9%  Similarity=-0.019  Sum_probs=232.7

Q ss_pred             HhCCCCHHHHHHHHHHHH--Hcc-CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH
Q 005817          152 MRFKGDIELWFKYMEFCR--QRK-NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE  227 (676)
Q Consensus       152 ~~~p~~~~lW~~y~~~~~--~~~-~~~~~~~~~ral~~~P~~~-~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~  227 (676)
                      -..|..+.  ..|.+...  +.| +..+...|.+++...|.++ .+. .++.... ..|+.+.|+.++++++.-.|.+..
T Consensus        28 ~~~p~~~~--~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~  103 (822)
T PRK14574         28 VVNPAMAD--TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAG-WAGRDQEVIDVYERYQSSMNISSR  103 (822)
T ss_pred             ccCccchh--HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHH-HcCCcHHHHHHHHHhccCCCCCHH
Confidence            34555554  33443333  334 4688899999999999884 444 6666554 568899999999999832233222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHh
Q 005817          228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ  307 (676)
Q Consensus       228 lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (676)
                      .-...+.+...                                                                   .+
T Consensus       104 ~llalA~ly~~-------------------------------------------------------------------~g  116 (822)
T PRK14574        104 GLASAARAYRN-------------------------------------------------------------------EK  116 (822)
T ss_pred             HHHHHHHHHHH-------------------------------------------------------------------cC
Confidence            11111111111                                                                   13


Q ss_pred             hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~  387 (676)
                      +++.|..+|+++++..|++.+.+..+..++...   +..+.+...++++...+|..... ..++.+...           
T Consensus       117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~---~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-----------  181 (822)
T PRK14574        117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADA---GRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-----------  181 (822)
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc---CCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-----------
Confidence            567788888888888888776665443333332   34567777777777777774332 333333211           


Q ss_pred             cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcC--------cccc----cc---C---------C-CCCh---
Q 005817          388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAP--------KKEE----TR---D---------S-ELPS---  438 (676)
Q Consensus       388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~--------~~~d----~~---~---------~-~~~~---  438 (676)
                        .++..+|..+|+++++..|.+. ....|..........        ...+    ..   +         . +...   
T Consensus       182 --~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~  259 (822)
T PRK14574        182 --TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS  259 (822)
T ss_pred             --cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence              1334448888888888777644 444443332221100        0000    00   0         0 0000   


Q ss_pred             --hhhhhHHHHHHHHHHHHHc---CCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCChHHHHHHHHHHH
Q 005817          439 --HVEHYISHLLTVYEKAEAM---GCLTE----DIAHRYVTLYLQLGKLDEARKLAAKLCSG--KLSDSVQLWLLRISVE  507 (676)
Q Consensus       439 --~~~~~~~~a~~iye~al~~---~p~~~----~lw~~~~~l~~~~~~~~~A~~l~~~al~~--~~P~~~~lW~~~i~l~  507 (676)
                        ..-...+++..-++..+..   .|..-    .+..+.+-.+...+++.++++.|+..-..  ..|..+..|..-..+.
T Consensus       260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~  339 (822)
T PRK14574        260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID  339 (822)
T ss_pred             chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence              0011356788888887773   34322    23445666677889999999999887622  3577777777655443


Q ss_pred             HHhccccCCCCChhchHHHHHHHHHHHhhcCh------hh--hHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhC----
Q 005817          508 IRCVTRNSFSPSKADILSIFELLKCILTKVSA------LE--SESLWLMALKFFMNQK-HYFDKLVEIALISVAKD----  574 (676)
Q Consensus       508 ~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~------~~--~~~lW~~~l~~~~~~~-~~~~~~~~~a~~~~~~~----  574 (676)
                      .  +          .++++..+|..++..-++      ..  ...|+-.+   ++..+ +.+..+++..... .|-    
T Consensus       340 ~--~----------~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~---ld~e~~~~A~~~l~~~~~~-~p~~~~~  403 (822)
T PRK14574        340 R--R----------LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL---NESEQLDKAYQFAVNYSEQ-TPYQVGV  403 (822)
T ss_pred             c--C----------CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH---HhcccHHHHHHHHHHHHhc-CCcEEec
Confidence            3  3          258899999999874321      10  12233222   22211 3344445544431 221    


Q ss_pred             ---CCCCCCcchHHHH---HHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHH
Q 005817          575 ---GGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESAL  648 (676)
Q Consensus       575 ---~~~~~~~~~~~~y---~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al  648 (676)
                         .+..+.++|...+   +....-.|++.+|.+++++.+...|.+..+....++++...+      ...+|..++..+.
T Consensus       404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg------~p~~A~~~~k~a~  477 (822)
T PRK14574        404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARD------LPRKAEQELKAVE  477 (822)
T ss_pred             cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHh
Confidence               0112345666332   344556899999999999999999999999999999999988      8899999999999


Q ss_pred             hhCCCCc
Q 005817          649 ATYDQNT  655 (676)
Q Consensus       649 ~~~~~~~  655 (676)
                      ...|.+.
T Consensus       478 ~l~P~~~  484 (822)
T PRK14574        478 SLAPRSL  484 (822)
T ss_pred             hhCCccH
Confidence            9888654

>PRK12370 invasion protein regulator; Provisional

Probab=99.08  E-value=7.2e-08  Score=108.24  Aligned_cols=227  Identities=10%  Similarity=-0.017  Sum_probs=153.3

Q ss_pred             hhHHHHHHHHHHHHhhccCchh-HHHHHHH--HHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTK--FLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~  466 (676)
                      .+.+++|+..|++|++..|+.. .|..-..  +....... .          ...+.+.+|...+++|+..+|.++..|.
T Consensus       274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-~----------~~~~~~~~A~~~~~~Al~ldP~~~~a~~  342 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-F----------DKQNAMIKAKEHAIKATELDHNNPQALG  342 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-c----------ccchHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            3568899999999999988754 2221111  11111100 0          0135689999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHH
Q 005817          467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLW  546 (676)
Q Consensus       467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW  546 (676)
                      ..+.++...|++++|...+++|+ +..|++...|..++.+....|          +.+++...|++|+...|.......+
T Consensus       343 ~lg~~~~~~g~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~G----------~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        343 LLGLINTIHSEYIVGSLLFKQAN-LLSPISADIKYYYGWNLFMAG----------QLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHhcCCCChhhHHH
Confidence            99999999999999999999999 899999999999988887776          4799999999999987754322222


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005817          547 LMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELEN  626 (676)
Q Consensus       547 ~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~  626 (676)
                      ...+-+.....+.+...+++++....|..     +......+..+...|+.++|+..+.++...+|.+...+......-.
T Consensus       412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~-----~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (553)
T PRK12370        412 KLWITYYHTGIDDAIRLGDELRSQHLQDN-----PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC  486 (553)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhccccC-----HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence            22222222222344445555543222332     2222234556778999999999999988777776655544443333


Q ss_pred             hccCCCCccchHHHHHHHHHHHhhC
Q 005817          627 NLASVGDKDSLVNARKLFESALATY  651 (676)
Q Consensus       627 ~~~~~~~~~~~~~aR~lye~al~~~  651 (676)
                      ..+        ++++..++..++..
T Consensus       487 ~~g--------~~a~~~l~~ll~~~  503 (553)
T PRK12370        487 QNS--------ERALPTIREFLESE  503 (553)
T ss_pred             ccH--------HHHHHHHHHHHHHh
Confidence            333        36666666655543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.07  E-value=3.4e-07  Score=100.87  Aligned_cols=321  Identities=15%  Similarity=0.107  Sum_probs=185.7

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~  216 (676)
                      +....|..|+...+++.|.....|...+......| ..++....--|-.++|.++++|+..+... ++.|++..||-+|.
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls-~~~~~i~qA~~cy~  231 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS-EQLGNINQARYCYS  231 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HhcccHHHHHHHHH
Confidence            34567889999999999999999999999998888 46777777778889999999999999998 47999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHH---HHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817          217 NGLRVCPTSEELWVEYLRMELTYLNKLK---ARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE  293 (676)
Q Consensus       217 ral~~~p~~~~lW~~y~~~e~~~~~~~~---~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (676)
                      |||+.+|.+.++-.+.+.+....+..-+   .+..++...       |.+  ...|..                      
T Consensus       232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-------p~~--d~er~~----------------------  280 (895)
T KOG2076|consen  232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-------PPV--DIERIE----------------------  280 (895)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-------Cch--hHHHHH----------------------
Confidence            9999999987777777777665544332   232222221       100  000000                      


Q ss_pred             chhhhhhhhhHHH-hhhHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHhcccCcHHHHH-HHHHHHHhcCCCChhhHHH
Q 005817          294 NMESQKSVDLFRE-QGLRVLQTIYSGAVEALPSSF--NLRQRFFEIVEATNLAQSDDMHD-KILSDMQRDFLVDPKYWDW  369 (676)
Q Consensus       294 ~~~~~~~~~~~~~-~~~~~a~~iy~~Al~~~p~~~--~~~~~~~~~~~~fe~~~~~~~a~-~il~~~~~~~p~~~~~w~~  369 (676)
                       +.....+..+.+ ++.+.|..+++.++....+-.  +-..-+..++-..   +.++.+. .+.+...+.-.+++.-|..
T Consensus       281 -d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~---~q~d~~~~~i~~~~~r~~e~d~~e~~~  356 (895)
T KOG2076|consen  281 -DLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN---KQSDKALMKIVDDRNRESEKDDSEWDT  356 (895)
T ss_pred             -HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh---HHHHHhhHHHHHHhccccCCChhhhhh
Confidence             001111222211 234667777777776322211  1111122222221   1222222 2222222222223333432


Q ss_pred             HHHHhcc-ccCCCCCCCc-Ccc-----------hh--HHHHHHHHHHHHh-hccCchhHHHHHHHHHHHHhcCccccccC
Q 005817          370 LARLKMT-DSVSKDGTSE-DIV-----------PS--QMQKAIQVYEEAL-KNVPSSMIFDLYTKFLMDMIAPKKEETRD  433 (676)
Q Consensus       370 la~~~~~-~~~~~~~~~~-~~~-----------~~--~~~~A~~~ye~al-~~~~~~~lw~~y~~~~~~~~~~~~~d~~~  433 (676)
                      .-..-.. ......+... ...           .+  ....+...|  .+ ..++....|..|.+.-.....        
T Consensus       357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~--l~~~n~~~~d~~dL~~d~a~al~~--------  426 (895)
T KOG2076|consen  357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHF--LVEDNVWVSDDVDLYLDLADALTN--------  426 (895)
T ss_pred             hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHH--HHHhcCChhhhHHHHHHHHHHHHh--------
Confidence            2211100 0000000000 000           00  111111111  11 122334467777666554321        


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817          434 SELPSHVEHYISHLLTVYEKAEAMGCL-TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT  512 (676)
Q Consensus       434 ~~~~~~~~~~~~~a~~iye~al~~~p~-~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~  512 (676)
                             .|.+..|...|..++...+. +..+|...+.++...|.++.|...|++++ ...|.+.+.-.....+..+.|.
T Consensus       427 -------~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl-~~~p~~~D~Ri~Lasl~~~~g~  498 (895)
T KOG2076|consen  427 -------IGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL-ILAPDNLDARITLASLYQQLGN  498 (895)
T ss_pred             -------cccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCchhhhhhHHHHHHhcCC
Confidence                   36688888888887776443 45689999999999999999999999999 7889888877777777766653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.06  E-value=6.9e-08  Score=103.15  Aligned_cols=274  Identities=14%  Similarity=0.112  Sum_probs=196.4

Q ss_pred             chHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHH
Q 005817          174 GRMKKVLAQVIRFHPKVPGVWIY--AAAWEFDHNLNVTAARALMQNGLRVCPT--------SEELWVEYLRMELTYLNKL  243 (676)
Q Consensus       174 ~~~~~~~~ral~~~P~~~~lW~~--~a~~e~~~~~~~~~Ar~~~~ral~~~p~--------~~~lW~~y~~~e~~~~~~~  243 (676)
                      ..|...|++.-..+++.+  |+.  .++..+| .+++++|+++|+.+=+..|-        |..+|..-=.+++.+....
T Consensus       336 ~~A~~~~~klp~h~~nt~--wvl~q~GrayFE-l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  336 REALNLFEKLPSHHYNTG--WVLSQLGRAYFE-LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHhhHHhcCCch--HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            578999999777778765  553  4555553 45899999999999999993        3456655444444432111


Q ss_pred             HHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHH-HhhhHHHHHHHHHHHhc
Q 005817          244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFR-EQGLRVLQTIYSGAVEA  322 (676)
Q Consensus       244 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~iy~~Al~~  322 (676)
                           ++..                 ....|+.|-.++                    ..|. +++.++|.+.|++|++.
T Consensus       413 -----Li~~-----------------~~~sPesWca~G--------------------NcfSLQkdh~~Aik~f~RAiQl  450 (638)
T KOG1126|consen  413 -----LIDT-----------------DPNSPESWCALG--------------------NCFSLQKDHDTAIKCFKRAIQL  450 (638)
T ss_pred             -----HHhh-----------------CCCCcHHHHHhc--------------------chhhhhhHHHHHHHHHHHhhcc
Confidence                 1110                 122344443321                    2222 35779999999999999


Q ss_pred             CCCchhHHHHHHHHHHHhccc--CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHH
Q 005817          323 LPSSFNLRQRFFEIVEATNLA--QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVY  400 (676)
Q Consensus       323 ~p~~~~~~~~~~~~~~~fe~~--~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~y  400 (676)
                      .|.. .+...++    -+|..  ...+.+..-+..++...|.+..+|+-++..+++             +++++.|.-.|
T Consensus       451 dp~f-aYayTLl----GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-------------qek~e~Ae~~f  512 (638)
T KOG1126|consen  451 DPRF-AYAYTLL----GHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-------------QEKLEFAEFHF  512 (638)
T ss_pred             CCcc-chhhhhc----CChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-------------cchhhHHHHHH
Confidence            8853 2221111    12211  135678888999999999999999999999987             58899999999


Q ss_pred             HHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH
Q 005817          401 EEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE  480 (676)
Q Consensus       401 e~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~  480 (676)
                      ++|++..|.+..-..++...+..                 .|..++|+.+|++|+..+|+++---+.-+.++...+++++
T Consensus       513 qkA~~INP~nsvi~~~~g~~~~~-----------------~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e  575 (638)
T KOG1126|consen  513 QKAVEINPSNSVILCHIGRIQHQ-----------------LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE  575 (638)
T ss_pred             HhhhcCCccchhHHhhhhHHHHH-----------------hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence            99999999877555555443332                 3678999999999999999999888888999999999999


Q ss_pred             HHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          481 ARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       481 A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      |+..+++.- +..|+...++......+.+.+.          .+.+..-|--|+..-|
T Consensus       576 al~~LEeLk-~~vP~es~v~~llgki~k~~~~----------~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  576 ALQELEELK-ELVPQESSVFALLGKIYKRLGN----------TDLALLHFSWALDLDP  622 (638)
T ss_pred             HHHHHHHHH-HhCcchHHHHHHHHHHHHHHcc----------chHHHHhhHHHhcCCC
Confidence            999999988 8899998888888888877664          3445455555555444

>PRK12370 invasion protein regulator; Provisional

Probab=99.06  E-value=1.4e-07  Score=105.94  Aligned_cols=189  Identities=14%  Similarity=0.021  Sum_probs=126.5

Q ss_pred             hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc------ccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCC
Q 005817          307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN------LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVS  380 (676)
Q Consensus       307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe------~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~  380 (676)
                      .+.+.|...|++|++..|++...+..+..++....      ..+....+...++++++..|+++.+|..+|..+..    
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~----  350 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI----  350 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Confidence            35678888888888888887665544433222111      11124577788888888888888888888777654    


Q ss_pred             CCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC
Q 005817          381 KDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC  459 (676)
Q Consensus       381 ~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p  459 (676)
                               .+++++|...|+++++..|+.. .|..+......                  .|.+++|...|++++..+|
T Consensus       351 ---------~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~------------------~G~~~eAi~~~~~Al~l~P  403 (553)
T PRK12370        351 ---------HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM------------------AGQLEEALQTINECLKLDP  403 (553)
T ss_pred             ---------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhcCC
Confidence                     4678888888888888877654 34333222222                  3667888888888888888


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817          460 LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK-LSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (676)
Q Consensus       460 ~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~-~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~  537 (676)
                      .++..+...+..+...|++++|...+++++ .. .|+++..+...+.+....|          +.++++..+.+.+...
T Consensus       404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l-~~~~p~~~~~~~~la~~l~~~G----------~~~eA~~~~~~~~~~~  471 (553)
T PRK12370        404 TRAAAGITKLWITYYHTGIDDAIRLGDELR-SQHLQDNPILLSMQVMFLSLKG----------KHELARKLTKEISTQE  471 (553)
T ss_pred             CChhhHHHHHHHHHhccCHHHHHHHHHHHH-HhccccCHHHHHHHHHHHHhCC----------CHHHHHHHHHHhhhcc
Confidence            876655444444556778888888888887 44 4667777766666665555          3677777777755443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.3e-06  Score=86.74  Aligned_cols=175  Identities=11%  Similarity=0.011  Sum_probs=120.0

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCC
Q 005817          440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS  519 (676)
Q Consensus       440 ~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~  519 (676)
                      ..+..++|...|++|+..+|.....|...+.=+...+|...|..-|++|+ ..+|.+-+.|.-..+.+.-.+-       
T Consensus       342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-di~p~DyRAWYGLGQaYeim~M-------  413 (559)
T KOG1155|consen  342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV-DINPRDYRAWYGLGQAYEIMKM-------  413 (559)
T ss_pred             HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-hcCchhHHHHhhhhHHHHHhcc-------
Confidence            44567899999999999999999999999888888999999999999999 8999999999987776654321       


Q ss_pred             hhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHH
Q 005817          520 KADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ  599 (676)
Q Consensus       520 ~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~  599 (676)
                         +.=+.-.|++|+.                                   +.|.+     +.++.+..+...+++..++
T Consensus       414 ---h~YaLyYfqkA~~-----------------------------------~kPnD-----sRlw~aLG~CY~kl~~~~e  450 (559)
T KOG1155|consen  414 ---HFYALYYFQKALE-----------------------------------LKPND-----SRLWVALGECYEKLNRLEE  450 (559)
T ss_pred             ---hHHHHHHHHHHHh-----------------------------------cCCCc-----hHHHHHHHHHHHHhccHHH
Confidence               1223333444433                                   33333     1222345555566677777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhC---C---C-C--chHHHHHHHHHhhcCC
Q 005817          600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY---D---Q-N--TSLWRDYYSTETKVSF  670 (676)
Q Consensus       600 Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~---~---~-~--~~lW~~y~~fE~~~G~  670 (676)
                      |.+.|.+++.........+...++|...++      +.+.|-+.|++.++..   +   + .  ..+|  -++++.++++
T Consensus       451 AiKCykrai~~~dte~~~l~~LakLye~l~------d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k~~~  522 (559)
T KOG1155|consen  451 AIKCYKRAILLGDTEGSALVRLAKLYEELK------DLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKKMKD  522 (559)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHhhcc
Confidence            777777777666565666666777766666      6777777777777743   1   1 1  1445  3567777666


Q ss_pred             ccc
Q 005817          671 SLL  673 (676)
Q Consensus       671 ~~~  673 (676)
                      .++
T Consensus       523 ~~~  525 (559)
T KOG1155|consen  523 FDE  525 (559)
T ss_pred             hHH
Confidence            553

>PLN03077 Protein ECB2; Provisional

Probab=99.04  E-value=8.3e-07  Score=105.54  Aligned_cols=407  Identities=8%  Similarity=-0.018  Sum_probs=254.1

Q ss_pred             hhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 005817          138 SGVARILEIYRLAVMR-FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM  215 (676)
Q Consensus       138 ~~~~~~~~iyeral~~-~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~  215 (676)
                      +....+..++..+.+. ++.|...+...+..+.+.| .+.+.++|+++..   .+...|-..+.-.. .+|+++.|..+|
T Consensus       302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~-~~g~~~~A~~lf  377 (857)
T PLN03077        302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYE-KNGLPDKALETY  377 (857)
T ss_pred             CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHH-hCCCHHHHHHHH
Confidence            3456677888887765 5668899999999998887 4789999998743   35677888888775 789999999999


Q ss_pred             HHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817          216 QNGLRV--CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE  293 (676)
Q Consensus       216 ~ral~~--~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (676)
                      ++..+.  .|+. ..+...+......+....+.. +.+...+.                      .+     .++.    
T Consensus       378 ~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~-l~~~~~~~----------------------g~-----~~~~----  424 (857)
T PLN03077        378 ALMEQDNVSPDE-ITIASVLSACACLGDLDVGVK-LHELAERK----------------------GL-----ISYV----  424 (857)
T ss_pred             HHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHH-HHHHHHHh----------------------CC-----Ccch----
Confidence            987554  3653 334444332221111111111 11110000                      00     0000    


Q ss_pred             chhhhhhhhhH-HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005817          294 NMESQKSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR  372 (676)
Q Consensus       294 ~~~~~~~~~~~-~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~  372 (676)
                       .-+...+..+ ..++++.|..+|++..+  + +...|..++..+...   +..+.+..+++++....+-+..++..+..
T Consensus       425 -~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~-d~vs~~~mi~~~~~~---g~~~eA~~lf~~m~~~~~pd~~t~~~lL~  497 (857)
T PLN03077        425 -VVANALIEMYSKCKCIDKALEVFHNIPE--K-DVISWTSIIAGLRLN---NRCFEALIFFRQMLLTLKPNSVTLIAALS  497 (857)
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHC---CCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence             0011112222 23578899999987543  2 334577766666543   34577888999988765555555554444


Q ss_pred             HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC--chhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817          373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP--SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV  450 (676)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~--~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i  450 (676)
                      .+-.             .+.++.+.+++...++.--  +..+....++...+                  .|.++.|..+
T Consensus       498 a~~~-------------~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k------------------~G~~~~A~~~  546 (857)
T PLN03077        498 ACAR-------------IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR------------------CGRMNYAWNQ  546 (857)
T ss_pred             HHhh-------------hchHHHhHHHHHHHHHhCCCccceechHHHHHHHH------------------cCCHHHHHHH
Confidence            4422             4678889999988887532  22233333333222                  4778999999


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHH
Q 005817          451 YEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELL  530 (676)
Q Consensus       451 ye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f  530 (676)
                      |+..    +.+...|...+.-+.+.|+.++|..++++........+...+...+....+.|          .++++.++|
T Consensus       547 f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g----------~v~ea~~~f  612 (857)
T PLN03077        547 FNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG----------MVTQGLEYF  612 (857)
T ss_pred             HHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC----------hHHHHHHHH
Confidence            9886    45677899999999999999999999998873333333344555555555544          488999999


Q ss_pred             HHHHhh--cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHH
Q 005817          531 KCILTK--VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKR  606 (676)
Q Consensus       531 ~~Al~~--~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~  606 (676)
                      +.....  +.++  ...+...++.+.+.+  +.+..+++.+-  +.|+      ...+...+.-....|+.+.+....++
T Consensus       613 ~~M~~~~gi~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd------~~~~~aLl~ac~~~~~~e~~e~~a~~  682 (857)
T PLN03077        613 HSMEEKYSITPN--LKHYACVVDLLGRAGKLTEAYNFINKMP--ITPD------PAVWGALLNACRIHRHVELGELAAQH  682 (857)
T ss_pred             HHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCC------HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            988743  3332  234555556665554  34444444321  2222      23333455555568899999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHh
Q 005817          607 FLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALA  649 (676)
Q Consensus       607 al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~  649 (676)
                      ++++.|.+...|.....+....|      ..+.|.++.+..-+
T Consensus       683 l~~l~p~~~~~y~ll~n~ya~~g------~~~~a~~vr~~M~~  719 (857)
T PLN03077        683 IFELDPNSVGYYILLCNLYADAG------KWDEVARVRKTMRE  719 (857)
T ss_pred             HHhhCCCCcchHHHHHHHHHHCC------ChHHHHHHHHHHHH
Confidence            99998988888888777776666      67777777766654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=8.8e-06  Score=83.67  Aligned_cols=252  Identities=10%  Similarity=0.052  Sum_probs=159.8

Q ss_pred             HhhhHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCC
Q 005817          306 EQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKD  382 (676)
Q Consensus       306 ~~~~~~a~~iy~~Al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~  382 (676)
                      ..+++.|..+|+..+++.|-..   +++...  +|.+-..+...-+|..+    ...+---|++....|.++-       
T Consensus       275 ~rDfD~a~s~Feei~knDPYRl~dmdlySN~--LYv~~~~skLs~LA~~v----~~idKyR~ETCCiIaNYYS-------  341 (559)
T KOG1155|consen  275 QRDFDQAESVFEEIRKNDPYRLDDMDLYSNV--LYVKNDKSKLSYLAQNV----SNIDKYRPETCCIIANYYS-------  341 (559)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchhHHHHhHH--HHHHhhhHHHHHHHHHH----HHhccCCccceeeehhHHH-------
Confidence            3588999999999999877542   222221  11110000001112222    2222233556666666663       


Q ss_pred             CCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc
Q 005817          383 GTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT  461 (676)
Q Consensus       383 ~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~  461 (676)
                            ..++.++|...|++||+..|... .|...-.-.++                  .++...|++.|.+|++.+|.+
T Consensus       342 ------lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE------------------mKNt~AAi~sYRrAvdi~p~D  397 (559)
T KOG1155|consen  342 ------LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE------------------MKNTHAAIESYRRAVDINPRD  397 (559)
T ss_pred             ------HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH------------------hcccHHHHHHHHHHHhcCchh
Confidence                  25789999999999999888643 67543221122                  355789999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh
Q 005817          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE  541 (676)
Q Consensus       462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~  541 (676)
                      ...|...++.+.-.+-+.=|+-.+++|+ ..-|++..+|....+.+.+.+          .++++.+.|.+|+.....+ 
T Consensus       398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~-~~kPnDsRlw~aLG~CY~kl~----------~~~eAiKCykrai~~~dte-  465 (559)
T KOG1155|consen  398 YRAWYGLGQAYEIMKMHFYALYYFQKAL-ELKPNDSRLWVALGECYEKLN----------RLEEAIKCYKRAILLGDTE-  465 (559)
T ss_pred             HHHHhhhhHHHHHhcchHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHhc----------cHHHHHHHHHHHHhccccc-
Confidence            9999999999999999999999999999 899999999999999998876          4799999999999754332 


Q ss_pred             hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhh--hhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005817          542 SESLWLMALKFFMNQK--HYFDKLVEIALISV--AKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL  608 (676)
Q Consensus       542 ~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~--~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al  608 (676)
                      ...+|.. ++.+++-.  +.+-..|++.+...  ....+ +.........+.|..+.+++++|-..-.+++
T Consensus       466 ~~~l~~L-akLye~l~d~~eAa~~yek~v~~~~~eg~~~-~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  466 GSALVRL-AKLYEELKDLNEAAQYYEKYVEVSELEGEID-DETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             hHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence            2345543 23333322  22333344444311  01110 0011111124566777778887755444444

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.98  E-value=1.2e-07  Score=97.49  Aligned_cols=167  Identities=14%  Similarity=0.122  Sum_probs=94.1

Q ss_pred             hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh--hHHHHHHHhccccCCCCCCC
Q 005817          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK--YWDWLARLKMTDSVSKDGTS  385 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~--~w~~la~~~~~~~~~~~~~~  385 (676)
                      +++.|...|++|++..|++...+...-.++..   .+..+.+...++++++.+|+++.  +|..++..            
T Consensus       113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~---~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~------------  177 (296)
T PRK11189        113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYY---GGRYELAQDDLLAFYQDDPNDPYRALWLYLAES------------  177 (296)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc------------
Confidence            34555666666666666655444433222211   12455666666666666666652  23322221            


Q ss_pred             cCcchhHHHHHHHHHHHHhhccCchhHHHHH-HHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHH
Q 005817          386 EDIVPSQMQKAIQVYEEALKNVPSSMIFDLY-TKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI  464 (676)
Q Consensus       386 ~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~l  464 (676)
                          .++.++|...|++++...+.. .|... ..+.....     +         ....++.+...++.+...+|..++.
T Consensus       178 ----~~~~~~A~~~l~~~~~~~~~~-~~~~~~~~~~lg~~-----~---------~~~~~~~~~~~~~~~~~l~~~~~ea  238 (296)
T PRK11189        178 ----KLDPKQAKENLKQRYEKLDKE-QWGWNIVEFYLGKI-----S---------EETLMERLKAGATDNTELAERLCET  238 (296)
T ss_pred             ----cCCHHHHHHHHHHHHhhCCcc-ccHHHHHHHHccCC-----C---------HHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                245788888887776544322 23211 11111100     0         0112233333334444445666789


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhccCC-ChHHHHHHHHHHHHH
Q 005817          465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLS-DSVQLWLLRISVEIR  509 (676)
Q Consensus       465 w~~~~~l~~~~~~~~~A~~l~~~al~~~~P-~~~~lW~~~i~l~~~  509 (676)
                      |...+..+...|++++|+..|++|+ ...| ++++.-...+.+...
T Consensus       239 ~~~Lg~~~~~~g~~~~A~~~~~~Al-~~~~~~~~e~~~~~~e~~~~  283 (296)
T PRK11189        239 YFYLAKYYLSLGDLDEAAALFKLAL-ANNVYNFVEHRYALLELALL  283 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 7665 566666666666654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.98  E-value=1.3e-06  Score=96.46  Aligned_cols=332  Identities=13%  Similarity=0.108  Sum_probs=189.0

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE  252 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~  252 (676)
                      .+.|..++..+++..|.++..|...+... ++.|++++|-...-.|-..+|.+.++|..+..+-...             
T Consensus       155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~Iy-EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~-------------  220 (895)
T KOG2076|consen  155 LEEAEEILMEVIKQDPRNPIAYYTLGEIY-EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL-------------  220 (895)
T ss_pred             HHHHHHHHHHHHHhCccchhhHHHHHHHH-HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-------------
Confidence            46788899999999999999999988887 6888999999999999899998888998887664432             


Q ss_pred             ccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHH
Q 005817          253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR  332 (676)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~  332 (676)
                                                                            ++++.|+..|.+||+..|.+.++...
T Consensus       221 ------------------------------------------------------~~i~qA~~cy~rAI~~~p~n~~~~~e  246 (895)
T KOG2076|consen  221 ------------------------------------------------------GNINQARYCYSRAIQANPSNWELIYE  246 (895)
T ss_pred             ------------------------------------------------------ccHHHHHHHHHHHHhcCCcchHHHHH
Confidence                                                                  25678889999999998887655443


Q ss_pred             HHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-
Q 005817          333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-  411 (676)
Q Consensus       333 ~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-  411 (676)
                      -..++.+                                                  .|...+|...|.+.+..+|... 
T Consensus       247 rs~L~~~--------------------------------------------------~G~~~~Am~~f~~l~~~~p~~d~  276 (895)
T KOG2076|consen  247 RSSLYQK--------------------------------------------------TGDLKRAMETFLQLLQLDPPVDI  276 (895)
T ss_pred             HHHHHHH--------------------------------------------------hChHHHHHHHHHHHHhhCCchhH
Confidence            3333222                                                  2556667777777777777432 


Q ss_pred             HHH-----HHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHhcCCHHHHHHH
Q 005817          412 IFD-----LYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC--LTEDIAHRYVTLYLQLGKLDEARKL  484 (676)
Q Consensus       412 lw~-----~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p--~~~~lw~~~~~l~~~~~~~~~A~~l  484 (676)
                      .|.     .+++....                  .+..++|..+++.++....  .+.+-.--++.+++....++.|...
T Consensus       277 er~~d~i~~~~~~~~~------------------~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~  338 (895)
T KOG2076|consen  277 ERIEDLIRRVAHYFIT------------------HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK  338 (895)
T ss_pred             HHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence            111     11111111                  1223788888888887422  2233344678888888888887766


Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhh--HHHHHHHHHHHHhh-hHHHH
Q 005817          485 AAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALES--ESLWLMALKFFMNQ-KHYFD  561 (676)
Q Consensus       485 ~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~--~~lW~~~l~~~~~~-~~~~~  561 (676)
                      .-..+....-++..-|-.+   +.+...                  -.++-.++...+  .++....+....-. .+..+
T Consensus       339 i~~~~~r~~e~d~~e~~~~---~~~~~~------------------~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e  397 (895)
T KOG2076|consen  339 IVDDRNRESEKDDSEWDTD---ERRREE------------------PNALCEVGKELSYDLRVIRLMICLVHLKERELLE  397 (895)
T ss_pred             HHHHhccccCCChhhhhhh---hhcccc------------------ccccccCCCCCCccchhHhHhhhhhcccccchHH
Confidence            5555521111222222111   000000                  000000111100  11111111111100 11112


Q ss_pred             HHHHHHHHh-hhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhccCCCCccchHH
Q 005817          562 KLVEIALIS-VAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG-LVLYQNCIELENNLASVGDKDSLVN  639 (676)
Q Consensus       562 ~~~~~a~~~-~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~-~~l~~~~i~lE~~~~~~~~~~~~~~  639 (676)
                      -+....... +.+..    ..++....++.+...|.++.|..+|..++..++.. ..+|...+.....++      ..+.
T Consensus       398 ~ll~~l~~~n~~~~d----~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~------e~e~  467 (895)
T KOG2076|consen  398 ALLHFLVEDNVWVSD----DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG------EYEE  467 (895)
T ss_pred             HHHHHHHHhcCChhh----hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh------hHHH
Confidence            222211110 11111    12233233455666777788888877777655443 347777777766666      7778


Q ss_pred             HHHHHHHHHhhCCCCchHHHHHHHHHhhcCCc
Q 005817          640 ARKLFESALATYDQNTSLWRDYYSTETKVSFS  671 (676)
Q Consensus       640 aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~  671 (676)
                      |-..|++++...|.+.++=+.-..+-...|+.
T Consensus       468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~  499 (895)
T KOG2076|consen  468 AIEFYEKVLILAPDNLDARITLASLYQQLGNH  499 (895)
T ss_pred             HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCH
Confidence            88888888887776666666666665555554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=2e-07  Score=99.72  Aligned_cols=261  Identities=15%  Similarity=0.058  Sum_probs=174.9

Q ss_pred             hhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH--hcccCcHHHHHHHH-HHHHhcCCCChhhHHHHHHHhcccc
Q 005817          302 DLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEA--TNLAQSDDMHDKIL-SDMQRDFLVDPKYWDWLARLKMTDS  378 (676)
Q Consensus       302 ~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~--fe~~~~~~~a~~il-~~~~~~~p~~~~~w~~la~~~~~~~  378 (676)
                      ..|+-.+++.|+.+|+.+-..-|-.++-    .++|..  +.+  ..+.+...+ ..++...|++|++|..++..+-.  
T Consensus       362 ayFEl~~Y~~a~~~F~~~r~~~p~rv~~----meiyST~LWHL--q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL--  433 (638)
T KOG1126|consen  362 AYFELIEYDQAERIFSLVRRIEPYRVKG----MEIYSTTLWHL--QDEVALSYLAQDLIDTDPNSPESWCALGNCFSL--  433 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccc----hhHHHHHHHHH--HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh--
Confidence            4445568899999999888776643211    112211  111  122333333 56778899999999999987643  


Q ss_pred             CCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC
Q 005817          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG  458 (676)
Q Consensus       379 ~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~  458 (676)
                                 +++.+.|+..|++|++..|.    ..|+-.+...             .......+++|...|..|+..+
T Consensus       434 -----------Qkdh~~Aik~f~RAiQldp~----faYayTLlGh-------------E~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  434 -----------QKDHDTAIKCFKRAIQLDPR----FAYAYTLLGH-------------ESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             -----------hhHHHHHHHHHHHhhccCCc----cchhhhhcCC-------------hhhhhHHHHhHHHHHHhhhcCC
Confidence                       68899999999999998886    2344333321             0112356899999999999999


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       459 p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      |.+...|...+-.+.++++++.|.--+++|+ ..+|.+..+-.-....+.+.+.          .+++.++|++|+..-|
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~-~INP~nsvi~~~~g~~~~~~k~----------~d~AL~~~~~A~~ld~  554 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV-EINPSNSVILCHIGRIQHQLKR----------KDKALQLYEKAIHLDP  554 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhh-cCCccchhHHhhhhHHHHHhhh----------hhHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999 9999999888888888877664          6889999999998655


Q ss_pred             hhhhHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHH
Q 005817          539 ALESESLWLMALKFFM-NQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV  616 (676)
Q Consensus       539 ~~~~~~lW~~~l~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~  616 (676)
                      .+ .+..+....-++. .+.+.+-..++... .+.|+..     .+.-..+....+.|+.+.|..-|.-|..+.|....
T Consensus       555 kn-~l~~~~~~~il~~~~~~~eal~~LEeLk-~~vP~es-----~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  555 KN-PLCKYHRASILFSLGRYVEALQELEELK-ELVPQES-----SVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             CC-chhHHHHHHHHHhhcchHHHHHHHHHHH-HhCcchH-----HHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            43 2222221110111 11122222233222 2334431     22213344456678888888888888888777665

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.93  E-value=4.2e-07  Score=89.36  Aligned_cols=199  Identities=11%  Similarity=0.057  Sum_probs=126.1

Q ss_pred             CHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817          157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM  235 (676)
Q Consensus       157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~  235 (676)
                      ....+...+..+...| ...+...+++++..+|.++..|...+.... ..|+++.|...|++++...|.+..+|..++.+
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            3566666666666655 467777777777777777777777777765 56777888888888887777766655555443


Q ss_pred             HHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHH
Q 005817          236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTI  315 (676)
Q Consensus       236 e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i  315 (676)
                      ....                                                                   ++++.|...
T Consensus       109 ~~~~-------------------------------------------------------------------g~~~~A~~~  121 (234)
T TIGR02521       109 LCQQ-------------------------------------------------------------------GKYEQAMQQ  121 (234)
T ss_pred             HHHc-------------------------------------------------------------------ccHHHHHHH
Confidence            3211                                                                   244566777


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHH
Q 005817          316 YSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQK  395 (676)
Q Consensus       316 y~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~  395 (676)
                      |++++...+                                   .|.....|..++..+..             .++++.
T Consensus       122 ~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~~~-------------~g~~~~  153 (234)
T TIGR02521       122 FEQAIEDPL-----------------------------------YPQPARSLENAGLCALK-------------AGDFDK  153 (234)
T ss_pred             HHHHHhccc-----------------------------------cccchHHHHHHHHHHHH-------------cCCHHH
Confidence            777665321                                   11222333344444433             356777


Q ss_pred             HHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 005817          396 AIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ  474 (676)
Q Consensus       396 A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~  474 (676)
                      |...|+++++..|... .|.........                  .|++++|...+++++...|.++..+...+.++..
T Consensus       154 A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (234)
T TIGR02521       154 AEKYLTRALQIDPQRPESLLELAELYYL------------------RGQYKDARAYLERYQQTYNQTAESLWLGIRIARA  215 (234)
T ss_pred             HHHHHHHHHHhCcCChHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            7778877777666532 33333222222                  3567778888888877777777777777888888


Q ss_pred             cCCHHHHHHHHHHHh
Q 005817          475 LGKLDEARKLAAKLC  489 (676)
Q Consensus       475 ~~~~~~A~~l~~~al  489 (676)
                      .|+.+.|+.+.+.+.
T Consensus       216 ~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       216 LGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HhhHHHHHHHHHHHH
Confidence            888888887776665

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.92  E-value=9.3e-08  Score=89.73  Aligned_cols=175  Identities=14%  Similarity=-0.023  Sum_probs=121.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      +|+...|+.-+++|++.+|.++..|...+.++...|..+.|.+-|++|+ +..|++.++...|.-+.-.+|.        
T Consensus        48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl-sl~p~~GdVLNNYG~FLC~qg~--------  118 (250)
T COG3063          48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL-SLAPNNGDVLNNYGAFLCAQGR--------  118 (250)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH-hcCCCccchhhhhhHHHHhCCC--------
Confidence            4778999999999999999999999999999999999999999999999 8999999999999988887764        


Q ss_pred             hchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHH
Q 005817          521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA  600 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~A  600 (676)
                        .+++...|.+|+.. |.            |....                         .-+....-...+.|..+.|
T Consensus       119 --~~eA~q~F~~Al~~-P~------------Y~~~s-------------------------~t~eN~G~Cal~~gq~~~A  158 (250)
T COG3063         119 --PEEAMQQFERALAD-PA------------YGEPS-------------------------DTLENLGLCALKAGQFDQA  158 (250)
T ss_pred             --hHHHHHHHHHHHhC-CC------------CCCcc-------------------------hhhhhhHHHHhhcCCchhH
Confidence              68888888888763 11            00000                         0000111113345566666


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC-CCchHHHHHHHHHhhcCCc
Q 005817          601 REMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTETKVSFS  671 (676)
Q Consensus       601 r~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~-~~~~lW~~y~~fE~~~G~~  671 (676)
                      +..|++++...|...........++...+      ++-.||..+++.....+ +-..+|+. |+|+...||-
T Consensus       159 ~~~l~raL~~dp~~~~~~l~~a~~~~~~~------~y~~Ar~~~~~~~~~~~~~A~sL~L~-iriak~~gd~  223 (250)
T COG3063         159 EEYLKRALELDPQFPPALLELARLHYKAG------DYAPARLYLERYQQRGGAQAESLLLG-IRIAKRLGDR  223 (250)
T ss_pred             HHHHHHHHHhCcCCChHHHHHHHHHHhcc------cchHHHHHHHHHHhcccccHHHHHHH-HHHHHHhccH
Confidence            66666666666665555556666655555      55666666666655554 33355554 4566655554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.87  E-value=5.3e-07  Score=88.60  Aligned_cols=189  Identities=10%  Similarity=-0.040  Sum_probs=136.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      .++++.|...+++++..+|.+...+...+..+...|++++|...+++++ ...|.+...|..++.+....+         
T Consensus        44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~g---------  113 (234)
T TIGR02521        44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL-TLNPNNGDVLNNYGTFLCQQG---------  113 (234)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcc---------
Confidence            3678999999999999999999999999999999999999999999999 889999999998888887765         


Q ss_pred             hchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHH
Q 005817          521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ  598 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~  598 (676)
                       +.+++.+.|.+++...+.......|......+...+  +.+...+++++.. .|..     ......++......|+++
T Consensus       114 -~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-----~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       114 -KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DPQR-----PESLLELAELYYLRGQYK  186 (234)
T ss_pred             -cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCC-----hHHHHHHHHHHHHcCCHH
Confidence             478899999999874321112223332222222222  3445556655542 2322     223334566677789999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       599 ~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      +|...+++++...|.+...+...+.+....+      +.+.++.+.+.+...+|
T Consensus       187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       187 DARAYLERYQQTYNQTAESLWLGIRIARALG------DVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh------hHHHHHHHHHHHHhhCc
Confidence            9999999998876666666656666666666      78888888888776544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.86  E-value=6.6e-06  Score=88.53  Aligned_cols=285  Identities=13%  Similarity=0.051  Sum_probs=182.8

Q ss_pred             HhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhh-HHHHHHHhccccCCCCCC
Q 005817          306 EQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKY-WDWLARLKMTDSVSKDGT  384 (676)
Q Consensus       306 ~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~-w~~la~~~~~~~~~~~~~  384 (676)
                      +|+++.|++...++-+..+. +.+.. ++-..... ..+..+.+...+.++.+..|++... ....++.++.        
T Consensus        97 eGd~~~A~k~l~~~~~~~~~-p~l~~-llaA~aA~-~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~--------  165 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQ-PVVNY-LLAAEAAQ-QRGDEARANQHLERAAELADNDQLPVEITRVRIQLA--------  165 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccc-hHHHH-HHHHHHHH-HCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--------
Confidence            56788888777766554322 22222 11111112 2246788999999999988888543 3444666654        


Q ss_pred             CcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH
Q 005817          385 SEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED  463 (676)
Q Consensus       385 ~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~  463 (676)
                           .++++.|...+++.++..|.+. ....-......                  .|+.+.+..++.+.....+.+++
T Consensus       166 -----~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~------------------~gdw~~a~~~l~~l~k~~~~~~~  222 (398)
T PRK10747        166 -----RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR------------------TGAWSSLLDILPSMAKAHVGDEE  222 (398)
T ss_pred             -----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------------------HHhHHHHHHHHHHHHHcCCCCHH
Confidence                 4788999999999999888654 22222222222                  47789999999998887666544


Q ss_pred             H--------HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817          464 I--------AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (676)
Q Consensus       464 l--------w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~  535 (676)
                      -        |...........+.+...++++..- ...|+++.++..++......|          +.+++.++++++++
T Consensus       223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp-~~~~~~~~~~~~~A~~l~~~g----------~~~~A~~~L~~~l~  291 (398)
T PRK10747        223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS-RKTRHQVALQVAMAEHLIECD----------DHDTAQQIILDGLK  291 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC-HHHhCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHh
Confidence            2        2222222223344555566666655 567889999999999888876          47888888999988


Q ss_pred             hcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCH
Q 005817          536 KVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGL  615 (676)
Q Consensus       536 ~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~  615 (676)
                      .-+ .  ..+...+........+...+..+...+ ..|++     +.+...++....+.|++++|+..|+++++..|.+.
T Consensus       292 ~~~-~--~~l~~l~~~l~~~~~~~al~~~e~~lk-~~P~~-----~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~  362 (398)
T PRK10747        292 RQY-D--ERLVLLIPRLKTNNPEQLEKVLRQQIK-QHGDT-----PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY  362 (398)
T ss_pred             cCC-C--HHHHHHHhhccCCChHHHHHHHHHHHh-hCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence            433 2  223333332111111222222222222 23443     45555788889999999999999999999876654


Q ss_pred             HHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhC
Q 005817          616 VLYQNCIELENNLASVGDKDSLVNARKLFESALATY  651 (676)
Q Consensus       616 ~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~  651 (676)
                       .+..+..+....|      +.+.|..+|.+++...
T Consensus       363 -~~~~La~~~~~~g------~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        363 -DYAWLADALDRLH------KPEEAAAMRRDGLMLT  391 (398)
T ss_pred             -HHHHHHHHHHHcC------CHHHHHHHHHHHHhhh
Confidence             4556777777877      8899999999999865

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=3.9e-06  Score=88.30  Aligned_cols=183  Identities=9%  Similarity=0.006  Sum_probs=121.1

Q ss_pred             hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817          307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE  386 (676)
Q Consensus       307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~  386 (676)
                      ..+.....+.+..++..|-+.....--+-.  -.+.+ .....-.+=.+++..+|+.+..|+..|-+++.          
T Consensus       258 c~f~~c~kit~~lle~dpfh~~~~~~~ia~--l~el~-~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~----------  324 (611)
T KOG1173|consen  258 CRFKECLKITEELLEKDPFHLPCLPLHIAC--LYELG-KSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM----------  324 (611)
T ss_pred             ChHHHHHHHhHHHHhhCCCCcchHHHHHHH--HHHhc-ccchHHHHHHHHHHhCCCCCcchhhHHHHHHH----------
Confidence            367788888888888877664433221111  12222 12233334468899999999999999998876          


Q ss_pred             CcchhHHHHHHHHHHHHhhccCc-hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc--HH
Q 005817          387 DIVPSQMQKAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT--ED  463 (676)
Q Consensus       387 ~~~~~~~~~A~~~ye~al~~~~~-~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~--~~  463 (676)
                         .+++.+||..|-+|..-.|+ ..-|..|....-                  .++.-++|...|..|-...|.+  |.
T Consensus       325 ---i~k~seARry~SKat~lD~~fgpaWl~fghsfa------------------~e~EhdQAmaaY~tAarl~~G~hlP~  383 (611)
T KOG1173|consen  325 ---IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA------------------GEGEHDQAMAAYFTAARLMPGCHLPS  383 (611)
T ss_pred             ---hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh------------------hcchHHHHHHHHHHHHHhccCCcchH
Confidence               46788999999999876665 336776654322                  1355688999999998876554  55


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      +|+..  =+.+.++.+-|.+.+..|+ ..+|.++-+.....-+.-..+          ...++...|+.++..
T Consensus       384 LYlgm--ey~~t~n~kLAe~Ff~~A~-ai~P~Dplv~~Elgvvay~~~----------~y~~A~~~f~~~l~~  443 (611)
T KOG1173|consen  384 LYLGM--EYMRTNNLKLAEKFFKQAL-AIAPSDPLVLHELGVVAYTYE----------EYPEALKYFQKALEV  443 (611)
T ss_pred             HHHHH--HHHHhccHHHHHHHHHHHH-hcCCCcchhhhhhhheeehHh----------hhHHHHHHHHHHHHH
Confidence            54432  2235788999999999999 899988766554432222222          356777777777743

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.81  E-value=7.2e-08  Score=100.00  Aligned_cols=131  Identities=18%  Similarity=0.244  Sum_probs=106.4

Q ss_pred             HHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHh
Q 005817           74 IVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMR  153 (676)
Q Consensus        74 i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~  153 (676)
                      |.++...|+..+..+|.++..|++||+|...+...-..+                    .....+...+-..||++|++.
T Consensus         1 i~~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--------------------~~~~~a~~E~klsilerAL~~   60 (321)
T PF08424_consen    1 IRKRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--------------------KAERRALAERKLSILERALKH   60 (321)
T ss_pred             CchHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--------------------hhhHHHHHHHHHHHHHHHHHh
Confidence            456788999999999999999999999987654211100                    011224567788999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCC
Q 005817          154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN--LNVTAARALMQNGLRVCPT  224 (676)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~--~~~~~Ar~~~~ral~~~p~  224 (676)
                      +|++..||+.|++.+.+.. .+.+.+.+++++..+|+++.+|..|+.+.....  -+++.++.+|.++|+....
T Consensus        61 np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~  134 (321)
T PF08424_consen   61 NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR  134 (321)
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999988765 467899999999999999999999999986422  3588999999999987653

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.75  E-value=3.7e-06  Score=86.58  Aligned_cols=234  Identities=13%  Similarity=-0.046  Sum_probs=148.0

Q ss_pred             hHHHHHHHHHHHHhhccCch--hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817          391 SQMQKAIQVYEEALKNVPSS--MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (676)
Q Consensus       391 ~~~~~A~~~ye~al~~~~~~--~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~  468 (676)
                      ...+.++.-+.+.|...+..  .....|..  .....             ...|..+.|+..|++++..+|.++..|...
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~--~g~~~-------------~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l  104 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYE--RGVLY-------------DSLGLRALARNDFSQALALRPDMADAYNYL  104 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHH--HHHHH-------------HHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            45677888888888754421  11111211  11110             013678899999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005817          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLM  548 (676)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~  548 (676)
                      +..+...|++++|...+++++ +..|++...|..++......|          +.+++.+.|++++...|......+|..
T Consensus       105 g~~~~~~g~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g----------~~~eA~~~~~~al~~~P~~~~~~~~~~  173 (296)
T PRK11189        105 GIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAYLNRGIALYYGG----------RYELAQDDLLAFYQDDPNDPYRALWLY  173 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            999999999999999999999 899999999999888777665          479999999999998775533456653


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHH--HHHHHHHHc----CCCCCHHHHHHHH
Q 005817          549 ALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA--REMYKRFLA----LPRPGLVLYQNCI  622 (676)
Q Consensus       549 ~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~A--r~iy~~al~----~~p~~~~l~~~~i  622 (676)
                      ... .....+.+...+.++.....+       ..|.  +.......|+...+  .+.+..++.    ..|.....|....
T Consensus       174 l~~-~~~~~~~A~~~l~~~~~~~~~-------~~~~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg  243 (296)
T PRK11189        174 LAE-SKLDPKQAKENLKQRYEKLDK-------EQWG--WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLA  243 (296)
T ss_pred             HHH-ccCCHHHHHHHHHHHHhhCCc-------cccH--HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            221 111113333344333321111       2333  22222234544333  333333222    2233345566666


Q ss_pred             HHHhhccCCCCccchHHHHHHHHHHHhhCC-CCchHHHHHHHHHh
Q 005817          623 ELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTET  666 (676)
Q Consensus       623 ~lE~~~~~~~~~~~~~~aR~lye~al~~~~-~~~~lW~~y~~fE~  666 (676)
                      ......|      +.+.|+..|++|+...| +.+..=..-++++.
T Consensus       244 ~~~~~~g------~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~  282 (296)
T PRK11189        244 KYYLSLG------DLDEAAALFKLALANNVYNFVEHRYALLELAL  282 (296)
T ss_pred             HHHHHCC------CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            6666777      89999999999999987 43333333333433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.75  E-value=0.00032  Score=76.79  Aligned_cols=98  Identities=12%  Similarity=0.119  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      +.-.+..+++--+..|..+..+|-.+.=++...| +..+.+.|++++...=...+.|..++.-.. ..|.-..|..+.+.
T Consensus       304 ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~s-aag~~s~Av~ll~~  382 (799)
T KOG4162|consen  304 ILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYS-AAGSDSKAVNLLRE  382 (799)
T ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHH-HhccchHHHHHHHh
Confidence            3344555555556677778888877776666667 578889999998877777788888877663 56677788889998


Q ss_pred             HHHhC--CCCHHHHHHHHHHHH
Q 005817          218 GLRVC--PTSEELWVEYLRMEL  237 (676)
Q Consensus       218 al~~~--p~~~~lW~~y~~~e~  237 (676)
                      .+...  |.+..+.+...++..
T Consensus       383 ~~~~~~~ps~~s~~Lmasklc~  404 (799)
T KOG4162|consen  383 SLKKSEQPSDISVLLMASKLCI  404 (799)
T ss_pred             hcccccCCCcchHHHHHHHHHH
Confidence            88888  666666666555543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.69  E-value=0.00048  Score=74.05  Aligned_cols=367  Identities=14%  Similarity=0.087  Sum_probs=205.9

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE  252 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~  252 (676)
                      +.+-.++.+..|..+|.+++---+-+-.. ...|+-+.|-.....|++..+.|.--|.-+.-+.-.              
T Consensus        23 YkkgLK~~~~iL~k~~eHgeslAmkGL~L-~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~--------------   87 (700)
T KOG1156|consen   23 YKKGLKLIKQILKKFPEHGESLAMKGLTL-NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS--------------   87 (700)
T ss_pred             HHhHHHHHHHHHHhCCccchhHHhccchh-hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh--------------
Confidence            44567788888889998876444333332 367899999999999999999998888877633211              


Q ss_pred             ccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHH
Q 005817          253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR  332 (676)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~  332 (676)
                                                                           .++++.|.+.|.+|+..-|+|.++|..
T Consensus        88 -----------------------------------------------------dK~Y~eaiKcy~nAl~~~~dN~qilrD  114 (700)
T KOG1156|consen   88 -----------------------------------------------------DKKYDEAIKCYRNALKIEKDNLQILRD  114 (700)
T ss_pred             -----------------------------------------------------hhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence                                                                 136788999999999999999988877


Q ss_pred             HHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc---Cc
Q 005817          333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV---PS  409 (676)
Q Consensus       333 ~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~---~~  409 (676)
                      +--+-.+..   ..+.....=..+++..|..-..|+.+|.....             .+....|..+.++-.+..   |+
T Consensus       115 lslLQ~QmR---d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-------------~g~y~~A~~il~ef~~t~~~~~s  178 (700)
T KOG1156|consen  115 LSLLQIQMR---DYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-------------LGEYKMALEILEEFEKTQNTSPS  178 (700)
T ss_pred             HHHHHHHHH---hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhccCCC
Confidence            632222221   23344455567788899999999998877654             467777777776666654   33


Q ss_pred             hhHHHHHHHHHHHH-hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhcCCHHHHHHHH
Q 005817          410 SMIFDLYTKFLMDM-IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL---TEDIAHRYVTLYLQLGKLDEARKLA  485 (676)
Q Consensus       410 ~~lw~~y~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~---~~~lw~~~~~l~~~~~~~~~A~~l~  485 (676)
                      ......-.-+..+. ...             ..|..+   .+++......+.   ....-..-++++.+.+++++|..+|
T Consensus       179 ~~~~e~se~~Ly~n~i~~-------------E~g~~q---~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y  242 (700)
T KOG1156|consen  179 KEDYEHSELLLYQNQILI-------------EAGSLQ---KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY  242 (700)
T ss_pred             HHHHHHHHHHHHHHHHHH-------------HcccHH---HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence            22111111111110 000             011222   223333322221   2233445678888888999999999


Q ss_pred             HHHhhccCCChHHHHHHHHHHHHHh-cc--------------cc-----CCCC----ChhchH-HHHHHHHHHHhh-cCh
Q 005817          486 AKLCSGKLSDSVQLWLLRISVEIRC-VT--------------RN-----SFSP----SKADIL-SIFELLKCILTK-VSA  539 (676)
Q Consensus       486 ~~al~~~~P~~~~lW~~~i~l~~~~-~~--------------~~-----~~~p----~~~~~~-~~~~~f~~Al~~-~~~  539 (676)
                      ...+ ..+|++..-+..+....-.. +.              ..     .+.|    ++.++. .+.+.+..-+++ +|+
T Consensus       243 ~~Ll-~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~  321 (700)
T KOG1156|consen  243 RRLL-ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS  321 (700)
T ss_pred             HHHH-hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence            9988 78888765554444333100 00              00     0001    110111 111122222222 221


Q ss_pred             hhhHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhhhC-------CCCCCCcc--hHHHH--HHHHHHhcCHHHHHHHHHH
Q 005817          540 LESESLWLMALKFFMN--QKHYFDKLVEIALISVAKD-------GGGESGFS--LPSAI--INLVIQKDGIQQAREMYKR  606 (676)
Q Consensus       540 ~~~~~lW~~~l~~~~~--~~~~~~~~~~~a~~~~~~~-------~~~~~~~~--~~~~y--~~~~~~~g~~~~Ar~iy~~  606 (676)
                      - ...+    ...+..  ....++++.......+.++       .+.+..|.  ++..|  ++-.-..|+++.|......
T Consensus       322 v-f~dl----~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~  396 (700)
T KOG1156|consen  322 V-FKDL----RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL  396 (700)
T ss_pred             h-hhhh----HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            1 0011    011111  1122333333322222221       11111121  11111  1223347899999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhC
Q 005817          607 FLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY  651 (676)
Q Consensus       607 al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~  651 (676)
                      ||...|.-+.+|+.-+.+-.-.|      +++.|-.+++.|-+..
T Consensus       397 AIdHTPTliEly~~KaRI~kH~G------~l~eAa~~l~ea~elD  435 (700)
T KOG1156|consen  397 AIDHTPTLIELYLVKARIFKHAG------LLDEAAAWLDEAQELD  435 (700)
T ss_pred             HhccCchHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHhcc
Confidence            99988888888877777766666      7788888888887763

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.66  E-value=0.00016  Score=71.91  Aligned_cols=311  Identities=14%  Similarity=0.037  Sum_probs=215.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ..-|..-|..|+.-+|+++....+-+......| ...+..-+++.|.+-|+-...-+.-+...+ .+|.++.|..-|+..
T Consensus        54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll-K~Gele~A~~DF~~v  132 (504)
T KOG0624|consen   54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL-KQGELEQAEADFDQV  132 (504)
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh-hcccHHHHHHHHHHH
Confidence            455788999999999999888887777777777 456788899999999998888888888887 789999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (676)
                      |+..|.+...-..+-++++..-.... |..+.                                                
T Consensus       133 l~~~~s~~~~~eaqskl~~~~e~~~l-~~ql~------------------------------------------------  163 (504)
T KOG0624|consen  133 LQHEPSNGLVLEAQSKLALIQEHWVL-VQQLK------------------------------------------------  163 (504)
T ss_pred             HhcCCCcchhHHHHHHHHhHHHHHHH-HHHHH------------------------------------------------
Confidence            99999765555555555443211110 00000                                                


Q ss_pred             hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcccc
Q 005817          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS  378 (676)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~  378 (676)
                         ..+..++...|.......++..|-+..++..-.+.|..-   +....+.+-+..+.+.-.++.+..+..+++++.  
T Consensus       164 ---s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~---~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~--  235 (504)
T KOG0624|consen  164 ---SASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAE---GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT--  235 (504)
T ss_pred             ---HHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhc---CcHHHHHHHHHHHHhccccchHHHHHHHHHHHh--
Confidence               001113566778888888888887777765544444332   345566777777777777888888888888775  


Q ss_pred             CCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHH--HHhcCccccccCCCCChhhhhhHHHHHHHHHHHH
Q 005817          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM--DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE  455 (676)
Q Consensus       379 ~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al  455 (676)
                                 .++.+.+.....++|+..|..+ -+..|-++-.  ..+. +...       ...++....+.+.+++.+
T Consensus       236 -----------vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le-s~e~-------~ie~~~~t~cle~ge~vl  296 (504)
T KOG0624|consen  236 -----------VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE-SAEQ-------AIEEKHWTECLEAGEKVL  296 (504)
T ss_pred             -----------hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH-HHHH-------HHhhhhHHHHHHHHHHHH
Confidence                       4677888888889999888766 3334432211  1110 0000       012356788899999999


Q ss_pred             HcCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHH
Q 005817          456 AMGCLTED----IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK  531 (676)
Q Consensus       456 ~~~p~~~~----lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~  531 (676)
                      ..+|..+.    ............+++-+|+..+.+++ ...|+++.+...++..+.-.+          ..+.+..-|+
T Consensus       297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL-~~d~~dv~~l~dRAeA~l~dE----------~YD~AI~dye  365 (504)
T KOG0624|consen  297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL-DIDPDDVQVLCDRAEAYLGDE----------MYDDAIHDYE  365 (504)
T ss_pred             hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH-hcCchHHHHHHHHHHHHhhhH----------HHHHHHHHHH
Confidence            98887433    23334445566788999999999999 889999999999988776433          4677777788


Q ss_pred             HHHhhcC
Q 005817          532 CILTKVS  538 (676)
Q Consensus       532 ~Al~~~~  538 (676)
                      +|+...+
T Consensus       366 ~A~e~n~  372 (504)
T KOG0624|consen  366 KALELNE  372 (504)
T ss_pred             HHHhcCc
Confidence            8876543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=1.5e-06  Score=91.79  Aligned_cols=111  Identities=16%  Similarity=0.221  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhcCC--CChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817          348 MHDKILSDMQRDFL--VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI  424 (676)
Q Consensus       348 ~a~~il~~~~~~~p--~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~  424 (676)
                      .....+-.+....|  .++++...++-++..             .+.+++|++.|+.||+..|++. +|..+=...-.  
T Consensus       412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l-------------s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN--  476 (579)
T KOG1125|consen  412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNL-------------SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN--  476 (579)
T ss_pred             HHHHHHHHHHHhCCCCCChhHHhhhHHHHhc-------------chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC--
Confidence            34455566666777  578888888877754             4789999999999999999876 99876432221  


Q ss_pred             cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                                      ....+.|+..|.+|++..|.....+...+--.+..|.+++|.+.+-.||
T Consensus       477 ----------------~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  477 ----------------GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             ----------------CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence                            1345799999999999999998889888888889999999998888887

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=6.2e-05  Score=76.45  Aligned_cols=295  Identities=12%  Similarity=0.023  Sum_probs=190.9

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Q 005817          144 LEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC  222 (676)
Q Consensus       144 ~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~  222 (676)
                      ..++-.-.+.+|.++.|-...++.+-..| +..+.-.|+++...+|.....--.|+.+.- ..|+.+....+..+.+...
T Consensus       218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~  296 (564)
T KOG1174|consen  218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG-QEGGCEQDSALMDYLFAKV  296 (564)
T ss_pred             HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH-hccCHhhHHHHHHHHHhhh
Confidence            45666667788888888888888877766 567888888888888887777777777663 5678888888888877766


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhh
Q 005817          223 PTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVD  302 (676)
Q Consensus       223 p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (676)
                      .....-|.--+..  .+-.+...|  .|..+.+...-+++.                         +     ..+..+..
T Consensus       297 ~~ta~~wfV~~~~--l~~~K~~~r--AL~~~eK~I~~~~r~-------------------------~-----~alilKG~  342 (564)
T KOG1174|consen  297 KYTASHWFVHAQL--LYDEKKFER--ALNFVEKCIDSEPRN-------------------------H-----EALILKGR  342 (564)
T ss_pred             hcchhhhhhhhhh--hhhhhhHHH--HHHHHHHHhccCccc-------------------------c-----hHHHhccH
Confidence            4444444433321  111111111  111111111111100                         0     00112222


Q ss_pred             hHH-HhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHH-HHhccccCC
Q 005817          303 LFR-EQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA-RLKMTDSVS  380 (676)
Q Consensus       303 ~~~-~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la-~~~~~~~~~  380 (676)
                      ++. .+..+.|..-|+.|...-|...+.+.-++..|-.|.   ....+...-+...+.+|++..+...++ ...+..   
T Consensus       343 lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~---~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d---  416 (564)
T KOG1174|consen  343 LLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK---RFKEANALANWTIRLFQNSARSLTLFGTLVLFPD---  416 (564)
T ss_pred             HHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC---
Confidence            222 245678889999999988888888888877776654   345566666777888899888766553 333321   


Q ss_pred             CCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC
Q 005817          381 KDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC  459 (676)
Q Consensus       381 ~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p  459 (676)
                               ..--++|...|+++|+..|.-. -...-+.++..                  +|..+.+..++++++...|
T Consensus       417 ---------p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~------------------Eg~~~D~i~LLe~~L~~~~  469 (564)
T KOG1174|consen  417 ---------PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV------------------EGPTKDIIKLLEKHLIIFP  469 (564)
T ss_pred             ---------chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh------------------hCccchHHHHHHHHHhhcc
Confidence                     2234889999999999888521 11112222221                  3566788999999998744


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817          460 LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (676)
Q Consensus       460 ~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (676)
                       +..+....++++...+.+++|...|..|+ ...|++..-..-.=.++.
T Consensus       470 -D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL-r~dP~~~~sl~Gl~~lEK  516 (564)
T KOG1174|consen  470 -DVNLHNHLGDIMRAQNEPQKAMEYYYKAL-RQDPKSKRTLRGLRLLEK  516 (564)
T ss_pred             -ccHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCccchHHHHHHHHHHh
Confidence             56889999999999999999999999999 899998765544333443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.54  E-value=0.0013  Score=65.15  Aligned_cols=227  Identities=15%  Similarity=0.122  Sum_probs=136.5

Q ss_pred             cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHHHHHHH
Q 005817          345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLM  421 (676)
Q Consensus       345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y~~~~~  421 (676)
                      ..+.|+.++..++..---.+.+...+..+|..             .+..++|+++-++-++..+..   .+-..|..+..
T Consensus       122 l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~-------------treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq  188 (389)
T COG2956         122 LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA-------------TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ  188 (389)
T ss_pred             hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence            34556666665554322223333344444432             367888998888877765532   36667776665


Q ss_pred             HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH-HHH
Q 005817          422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-QLW  500 (676)
Q Consensus       422 ~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~-~lW  500 (676)
                      ....               .++.++|+..+++|++.+|++...=+..++++...|+++.|.+.+++++ +++|... .+-
T Consensus       189 ~~~~---------------~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~-eQn~~yl~evl  252 (389)
T COG2956         189 QALA---------------SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL-EQNPEYLSEVL  252 (389)
T ss_pred             HHhh---------------hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH-HhChHHHHHHH
Confidence            5331               3568899999999999999999989999999999999999999999999 7777532 222


Q ss_pred             HHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCC
Q 005817          501 LLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESG  580 (676)
Q Consensus       501 ~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  580 (676)
                      -.....+...|.          +++                    |..   ++.+           +.. ..+.      
T Consensus       253 ~~L~~~Y~~lg~----------~~~--------------------~~~---fL~~-----------~~~-~~~g------  281 (389)
T COG2956         253 EMLYECYAQLGK----------PAE--------------------GLN---FLRR-----------AME-TNTG------  281 (389)
T ss_pred             HHHHHHHHHhCC----------HHH--------------------HHH---HHHH-----------HHH-ccCC------
Confidence            111112222221          111                    111   1111           110 1111      


Q ss_pred             cchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCC-CccchHHHHHHHHHHHhhCC
Q 005817          581 FSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVG-DKDSLVNARKLFESALATYD  652 (676)
Q Consensus       581 ~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~-~~~~~~~aR~lye~al~~~~  652 (676)
                      .+...+..+......+.+.|.....+-+.- .|+...+..+++++..-.+.| .+.+..-.|++-..-+...|
T Consensus       282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~  353 (389)
T COG2956         282 ADAELMLADLIELQEGIDAAQAYLTRQLRR-KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP  353 (389)
T ss_pred             ccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence            233335566666777888888877766654 455666777777766544332 23466667777666666554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.54  E-value=1e-05  Score=91.66  Aligned_cols=144  Identities=13%  Similarity=0.071  Sum_probs=126.4

Q ss_pred             HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcccc
Q 005817          352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEE  430 (676)
Q Consensus       352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d  430 (676)
                      -+....+++|++.++...+|.....             .++++.|..+++.+++..|... .+..|+..+.+        
T Consensus        74 ~~~~~~~~~~~~~~~~~~La~i~~~-------------~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~--------  132 (694)
T PRK15179         74 ELLDYVRRYPHTELFQVLVARALEA-------------AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR--------  132 (694)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHH-------------cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--------
Confidence            3456678899999999999999865             5789999999999999999765 66666665554        


Q ss_pred             ccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 005817          431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC  510 (676)
Q Consensus       431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~  510 (676)
                                .+.+++|+..+++++..+|.+++.....+..+.+.|.+++|..+|++++ ..+|++...|..++......
T Consensus       133 ----------~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~-~~~p~~~~~~~~~a~~l~~~  201 (694)
T PRK15179        133 ----------QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLS-RQHPEFENGYVGWAQSLTRR  201 (694)
T ss_pred             ----------hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHc
Confidence                      3678999999999999999999999999999999999999999999999 79999999999999999888


Q ss_pred             ccccCCCCChhchHHHHHHHHHHHhhc
Q 005817          511 VTRNSFSPSKADILSIFELLKCILTKV  537 (676)
Q Consensus       511 ~~~~~~~p~~~~~~~~~~~f~~Al~~~  537 (676)
                      |.          .+++...|++|+...
T Consensus       202 G~----------~~~A~~~~~~a~~~~  218 (694)
T PRK15179        202 GA----------LWRARDVLQAGLDAI  218 (694)
T ss_pred             CC----------HHHHHHHHHHHHHhh
Confidence            74          789999999999864

>PLN02789 farnesyltranstransferase

Probab=98.52  E-value=9.3e-05  Score=76.42  Aligned_cols=193  Identities=12%  Similarity=0.052  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCC--HHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN--VTAARALM  215 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~--~~~Ar~~~  215 (676)
                      ..+|..++..++..+|.+...|......+...+  ...+...+++++..+|.+..+|..-.-.. +..|.  ...+..++
T Consensus        53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l-~~l~~~~~~~el~~~  131 (320)
T PLN02789         53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA-EKLGPDAANKELEFT  131 (320)
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH-HHcCchhhHHHHHHH
Confidence            468999999999999999999998877777666  36788999999999999999998765443 34444  36789999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcch
Q 005817          216 QNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM  295 (676)
Q Consensus       216 ~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (676)
                      ++++..+|.+..+|..-.......                                                        
T Consensus       132 ~kal~~dpkNy~AW~~R~w~l~~l--------------------------------------------------------  155 (320)
T PLN02789        132 RKILSLDAKNYHAWSHRQWVLRTL--------------------------------------------------------  155 (320)
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHh--------------------------------------------------------
Confidence            999999999999998765432221                                                        


Q ss_pred             hhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc-cC---cHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005817          296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNL-AQ---SDDMHDKILSDMQRDFLVDPKYWDWLA  371 (676)
Q Consensus       296 ~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~-~~---~~~~a~~il~~~~~~~p~~~~~w~~la  371 (676)
                                 +.++.+...++++|+..|.+...|..-.-++...+. .+   ..+.......+++...|++..+|..+.
T Consensus       156 -----------~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~  224 (320)
T PLN02789        156 -----------GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLR  224 (320)
T ss_pred             -----------hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence                       134567888999999999888888765544433211 11   123455566789999999999999888


Q ss_pred             HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc
Q 005817          372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS  409 (676)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~  409 (676)
                      ..+......         ..+...|...+.++++..|.
T Consensus       225 ~ll~~~~~~---------l~~~~~~~~~~~~~~~~~~~  253 (320)
T PLN02789        225 GLFKDDKEA---------LVSDPEVSSVCLEVLSKDSN  253 (320)
T ss_pred             HHHhcCCcc---------cccchhHHHHHHHhhcccCC
Confidence            776431100         12334577777777765444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.48  E-value=2.7e-05  Score=73.47  Aligned_cols=182  Identities=12%  Similarity=0.046  Sum_probs=137.8

Q ss_pred             hhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccc
Q 005817          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD  377 (676)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~  377 (676)
                      ......|..+++..|+.-+++|++..|++...|.....+|...+   ..+.+.+-|++++...|+++.+...++-..-. 
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G---e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-  115 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG---ENDLADESYRKALSLAPNNGDVLNNYGAFLCA-  115 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---ChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-
Confidence            33445556678999999999999999999888877766665543   45789999999999999999998888766544 


Q ss_pred             cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc
Q 005817          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (676)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~  457 (676)
                                  +++++.|.+.|++|+..-.-......|.+.-.-               ....|....|+..|++++..
T Consensus       116 ------------qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C---------------al~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         116 ------------QGRPEEAMQQFERALADPAYGEPSDTLENLGLC---------------ALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             ------------CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH---------------HhhcCCchhHHHHHHHHHHh
Confidence                        468999999999999752111111112111110               11257789999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-ChHHHHHHHHHHHHHhcc
Q 005817          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS-DSVQLWLLRISVEIRCVT  512 (676)
Q Consensus       458 ~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P-~~~~lW~~~i~l~~~~~~  512 (676)
                      +|..+......+.++...|++-.|+..+++-. ...+ .-..||+. |.++...|+
T Consensus       169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~-~~~~~~A~sL~L~-iriak~~gd  222 (250)
T COG3063         169 DPQFPPALLELARLHYKAGDYAPARLYLERYQ-QRGGAQAESLLLG-IRIAKRLGD  222 (250)
T ss_pred             CcCCChHHHHHHHHHHhcccchHHHHHHHHHH-hcccccHHHHHHH-HHHHHHhcc
Confidence            99999999999999999999999999999988 5444 44566665 677777664

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=0.00044  Score=70.48  Aligned_cols=276  Identities=13%  Similarity=0.102  Sum_probs=183.6

Q ss_pred             hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817          307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE  386 (676)
Q Consensus       307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~  386 (676)
                      |+.+.|.-+|+++.-..|....---.| .++-  ...+..+....+..++.........-|+.-+...+.          
T Consensus       246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Y-a~LL--~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~----------  312 (564)
T KOG1174|consen  246 GDYFQAEDIFSSTLCANPDNVEAMDLY-AVLL--GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD----------  312 (564)
T ss_pred             cCchHHHHHHHHHhhCChhhhhhHHHH-HHHH--HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh----------
Confidence            455677888888888777654322111 1111  112346677777888777666666678777766654          


Q ss_pred             CcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817          387 DIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (676)
Q Consensus       387 ~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~  466 (676)
                         .+++++|...-+++++..|.+.  ..|+-  .....             ...+..+.|.-.|..|...-|..-+.|.
T Consensus       313 ---~K~~~rAL~~~eK~I~~~~r~~--~alil--KG~lL-------------~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~  372 (564)
T KOG1174|consen  313 ---EKKFERALNFVEKCIDSEPRNH--EALIL--KGRLL-------------IALERHTQAVIAFRTAQMLAPYRLEIYR  372 (564)
T ss_pred             ---hhhHHHHHHHHHHHhccCcccc--hHHHh--ccHHH-------------HhccchHHHHHHHHHHHhcchhhHHHHH
Confidence               4678899999999998766432  11210  00000             0135678899999999999899999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHH
Q 005817          467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLW  546 (676)
Q Consensus       467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW  546 (676)
                      ..+.-++..|.+.+|..+...+. +.+|.|..-......... .     .+|  ..-+++.+.++++|+.-|.....-+-
T Consensus       373 GL~hsYLA~~~~kEA~~~An~~~-~~~~~sA~~LtL~g~~V~-~-----~dp--~~rEKAKkf~ek~L~~~P~Y~~AV~~  443 (564)
T KOG1174|consen  373 GLFHSYLAQKRFKEANALANWTI-RLFQNSARSLTLFGTLVL-F-----PDP--RMREKAKKFAEKSLKINPIYTPAVNL  443 (564)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHH-HHhhcchhhhhhhcceee-c-----cCc--hhHHHHHHHHHhhhccCCccHHHHHH
Confidence            99999999999999999999999 788888765544321110 0     011  13477888999999876643211111


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005817          547 LMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELEN  626 (676)
Q Consensus       547 ~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~  626 (676)
                      ..=+-..+...+..-+++++++... ++.      .+-....++....+.+.+|..-|..|+++.|.+..-...+-.||.
T Consensus       444 ~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK  516 (564)
T KOG1174|consen  444 IAELCQVEGPTKDIIKLLEKHLIIF-PDV------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK  516 (564)
T ss_pred             HHHHHHhhCccchHHHHHHHHHhhc-ccc------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence            1101112333355666777776533 332      455567888888899999999999999999999998888888997


Q ss_pred             hccCC
Q 005817          627 NLASV  631 (676)
Q Consensus       627 ~~~~~  631 (676)
                      ....+
T Consensus       517 ~~~~~  521 (564)
T KOG1174|consen  517 SDDES  521 (564)
T ss_pred             ccCCC
Confidence            76543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.47  E-value=0.0019  Score=71.02  Aligned_cols=85  Identities=13%  Similarity=0.160  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCCHHHHHHH
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARAL  214 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--P~~~~lW~~~a~~e~~~~~~~~~Ar~~  214 (676)
                      +-+..+...||+++.---+....|..+.--....| ...+..+.+.++...  |.++...+++++.+.+..+.++.+..+
T Consensus       337 g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldY  416 (799)
T KOG4162|consen  337 GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDY  416 (799)
T ss_pred             HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHH
Confidence            34556677888888777777889988876655556 468899999999999  888999999999999888899999999


Q ss_pred             HHHHHHhC
Q 005817          215 MQNGLRVC  222 (676)
Q Consensus       215 ~~ral~~~  222 (676)
                      -++++..+
T Consensus       417 A~kai~~~  424 (799)
T KOG4162|consen  417 AQKAISLL  424 (799)
T ss_pred             HHHHHHHh
Confidence            99998755

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.44  E-value=5.3e-06  Score=75.47  Aligned_cols=100  Identities=11%  Similarity=0.009  Sum_probs=84.3

Q ss_pred             hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~  468 (676)
                      .++++.|...|++++...|... .|.........                  .|.++.|...|++++..+|.++..|...
T Consensus        37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~------------------~g~~~~A~~~y~~Al~l~p~~~~a~~~l   98 (144)
T PRK15359         37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM------------------LKEYTTAINFYGHALMLDASHPEPVYQT   98 (144)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            4789999999999999888654 45443333332                  4789999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (676)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (676)
                      +..+...|++++|+..+++++ ...|+++..|..+.....
T Consensus        99 g~~l~~~g~~~eAi~~~~~Al-~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         99 GVCLKMMGEPGLAREAFQTAI-KMSYADASWSEIRQNAQI  137 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHH
Confidence            999999999999999999999 899999999977665443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.44  E-value=7e-06  Score=78.93  Aligned_cols=98  Identities=9%  Similarity=0.055  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCC--HHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN--VTAARALM  215 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~--~~~Ar~~~  215 (676)
                      ....+...+++++...|++.+.|...+..+...| ++.+...|++++.+.|+++.+|..++...+...|+  ...|+.++
T Consensus        54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l  133 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI  133 (198)
T ss_pred             hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            3467778899999999999999999999998887 58899999999999999999999999854235566  59999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHH
Q 005817          216 QNGLRVCPTSEELWVEYLRME  236 (676)
Q Consensus       216 ~ral~~~p~~~~lW~~y~~~e  236 (676)
                      +++++.+|++..++...+...
T Consensus       134 ~~al~~dP~~~~al~~LA~~~  154 (198)
T PRK10370        134 DKALALDANEVTALMLLASDA  154 (198)
T ss_pred             HHHHHhCCCChhHHHHHHHHH
Confidence            999999999987776665443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.43  E-value=0.0051  Score=66.48  Aligned_cols=96  Identities=10%  Similarity=0.115  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      .+.|...-.++++-.+.|.--|-.|.=+.+..+ ++.+.+.|.+|+...|++.++|..++.+.. +.++++.....=.+-
T Consensus        57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~-QmRd~~~~~~tr~~L  135 (700)
T KOG1156|consen   57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI-QMRDYEGYLETRNQL  135 (700)
T ss_pred             hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHhhhhHHHHHHHH
Confidence            456778888999999999999999988876655 688999999999999999999999999886 778999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHH
Q 005817          219 LRVCPTSEELWVEYLRME  236 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e  236 (676)
                      ++..|....-|+.++.-.
T Consensus       136 Lql~~~~ra~w~~~Avs~  153 (700)
T KOG1156|consen  136 LQLRPSQRASWIGFAVAQ  153 (700)
T ss_pred             HHhhhhhHHHHHHHHHHH
Confidence            999999889999988643

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=1.7e-05  Score=83.87  Aligned_cols=211  Identities=11%  Similarity=0.012  Sum_probs=137.1

Q ss_pred             hhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817          297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (676)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~  376 (676)
                      +.....++..|++..|.-.|+.||+..|.+.+.|..+--  ...+. ..+..+...+.+|++..|++-++...+|-.+..
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~--~qaEN-E~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN  365 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGI--TQAEN-ENEQNAISALRRCLELDPTNLEALMALAVSYTN  365 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhh--Hhhhc-cchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence            556667777888999999999999999999999975422  22332 145678889999999999999988888876653


Q ss_pred             ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---------------------h----HHHHHHHHHHHHhcCccccc
Q 005817          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---------------------M----IFDLYTKFLMDMIAPKKEET  431 (676)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---------------------~----lw~~y~~~~~~~~~~~~~d~  431 (676)
                      .             +.-..|...+.+=|...|..                     .    +-..|+....+.-  ...|.
T Consensus       366 e-------------g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~--~~~Dp  430 (579)
T KOG1125|consen  366 E-------------GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP--TKIDP  430 (579)
T ss_pred             h-------------hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC--CCCCh
Confidence            2             12223444443333322110                     0    1111111111100  00122


Q ss_pred             cCC---CCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817          432 RDS---ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (676)
Q Consensus       432 ~~~---~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (676)
                      .+.   +|++...+.+++|..-|+.|+...|.+..+|-.++..+...++.++|+..|.+|+ +.-|..++.|...+--.+
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL-qLqP~yVR~RyNlgIS~m  509 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL-QLQPGYVRVRYNLGISCM  509 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH-hcCCCeeeeehhhhhhhh
Confidence            221   2233445678888888888888888888888888888877777888888888888 788888777776655555


Q ss_pred             HhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          509 RCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       509 ~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      ..|          ...++.+.|-.||..
T Consensus       510 NlG----------~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  510 NLG----------AYKEAVKHLLEALSM  527 (579)
T ss_pred             hhh----------hHHHHHHHHHHHHHh
Confidence            444          367777777777764

>PLN02789 farnesyltranstransferase

Probab=98.41  E-value=0.00025  Score=73.27  Aligned_cols=213  Identities=8%  Similarity=0.019  Sum_probs=145.5

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALG  251 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~-~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~  251 (676)
                      ..++..+++++++.+|.+..+|..-..... ..| ++..+...++++++.+|.+..+|..-..+-...           +
T Consensus        53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~-~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l-----------~  120 (320)
T PLN02789         53 SPRALDLTADVIRLNPGNYTVWHFRRLCLE-ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKL-----------G  120 (320)
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHH-HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHc-----------C
Confidence            578999999999999999999998877764 444 689999999999999999999997654332110           0


Q ss_pred             cccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHH
Q 005817          252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ  331 (676)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~  331 (676)
                      .                                                      ...+.+...++++++..|.+...|.
T Consensus       121 ~------------------------------------------------------~~~~~el~~~~kal~~dpkNy~AW~  146 (320)
T PLN02789        121 P------------------------------------------------------DAANKELEFTRKILSLDAKNYHAWS  146 (320)
T ss_pred             c------------------------------------------------------hhhHHHHHHHHHHHHhCcccHHHHH
Confidence            0                                                      0113457788899999999998887


Q ss_pred             HHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh
Q 005817          332 RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM  411 (676)
Q Consensus       332 ~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~  411 (676)
                      .---++..++   ..+.+...++++++.+|.+..+|...+........ ..     ......+.+.+...++|...|.+.
T Consensus       147 ~R~w~l~~l~---~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~-l~-----~~~~~~e~el~y~~~aI~~~P~N~  217 (320)
T PLN02789        147 HRQWVLRTLG---GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL-LG-----GLEAMRDSELKYTIDAILANPRNE  217 (320)
T ss_pred             HHHHHHHHhh---hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc-cc-----cccccHHHHHHHHHHHHHhCCCCc
Confidence            6555555543   46778889999999999999999887755321100 00     001124567778889999999765


Q ss_pred             -HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 005817          412 -IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ  474 (676)
Q Consensus       412 -lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~  474 (676)
                       .|...- ........ .            .+....+...+.+++..+|.++-..-..++++..
T Consensus       218 SaW~Yl~-~ll~~~~~-~------------l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        218 SPWRYLR-GLFKDDKE-A------------LVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             CHHHHHH-HHHhcCCc-c------------cccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence             775443 33321100 0            1223457777888888778776555555555543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.36  E-value=0.0027  Score=63.01  Aligned_cols=265  Identities=13%  Similarity=0.082  Sum_probs=154.2

Q ss_pred             HHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005817          164 YMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL  243 (676)
Q Consensus       164 y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~  243 (676)
                      =++|+.+..++++..+|-.+++..|...++-+..+.+. ...|.++.|.++=+-.+. -|+-.--=...+.+++      
T Consensus        42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLf-RsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL------  113 (389)
T COG2956          42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLF-RSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQL------  113 (389)
T ss_pred             HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHH-HhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHH------
Confidence            34555555566777777777777777777777666665 456677766665444333 2331100000000000      


Q ss_pred             HHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC
Q 005817          244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL  323 (676)
Q Consensus       244 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~  323 (676)
                             +                                                 ......|-+++|..+|...++..
T Consensus       114 -------~-------------------------------------------------~Dym~aGl~DRAE~~f~~L~de~  137 (389)
T COG2956         114 -------G-------------------------------------------------RDYMAAGLLDRAEDIFNQLVDEG  137 (389)
T ss_pred             -------H-------------------------------------------------HHHHHhhhhhHHHHHHHHHhcch
Confidence                   0                                                 00111234577777777666532


Q ss_pred             CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh-----hHHHHHHHhccccCCCCCCCcCcchhHHHHHHH
Q 005817          324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK-----YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ  398 (676)
Q Consensus       324 p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~-----~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~  398 (676)
                      ---......++.+|..-   ..++.|..+-+++++.-|+...     .+..+|+....             .++.++|+.
T Consensus       138 efa~~AlqqLl~IYQ~t---reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-------------~~~~d~A~~  201 (389)
T COG2956         138 EFAEGALQQLLNIYQAT---REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-------------SSDVDRARE  201 (389)
T ss_pred             hhhHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-------------hhhHHHHHH
Confidence            22224445555665432   2356677777777777666522     34455555543             467889999


Q ss_pred             HHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhcC
Q 005817          399 VYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT-EDIAHRYVTLYLQLG  476 (676)
Q Consensus       399 ~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~-~~lw~~~~~l~~~~~  476 (676)
                      .+++|++..|+.. .-..--+.+.                  .+|++++|.+.+++.++.+|.. +++--.....+...|
T Consensus       202 ~l~kAlqa~~~cvRAsi~lG~v~~------------------~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg  263 (389)
T COG2956         202 LLKKALQADKKCVRASIILGRVEL------------------AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG  263 (389)
T ss_pred             HHHHHHhhCccceehhhhhhHHHH------------------hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence            9999999888642 1110111111                  2478999999999999998874 556666677777889


Q ss_pred             CHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          477 KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       477 ~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      +.++.+..+.++. ..+|...-.-..+=..+...|           .+.+.....+-++.-|
T Consensus       264 ~~~~~~~fL~~~~-~~~~g~~~~l~l~~lie~~~G-----------~~~Aq~~l~~Ql~r~P  313 (389)
T COG2956         264 KPAEGLNFLRRAM-ETNTGADAELMLADLIELQEG-----------IDAAQAYLTRQLRRKP  313 (389)
T ss_pred             CHHHHHHHHHHHH-HccCCccHHHHHHHHHHHhhC-----------hHHHHHHHHHHHhhCC
Confidence            9999999999998 777764333222211222223           3556666666666655

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.36  E-value=0.001  Score=70.54  Aligned_cols=155  Identities=11%  Similarity=0.019  Sum_probs=98.6

Q ss_pred             hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~  387 (676)
                      +++.|..+++++++..|++...+..-+..+......+....+...+......+|........++..+..           
T Consensus        58 ~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~-----------  126 (355)
T cd05804          58 DLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE-----------  126 (355)
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH-----------
Confidence            556677778888877777653332100001111111123344444544334455555555555655544           


Q ss_pred             cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH----
Q 005817          388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE----  462 (676)
Q Consensus       388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~----  462 (676)
                        .++++.|...++++++..|... .+.........                  .|.++.+...+++++...|.++    
T Consensus       127 --~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~------------------~g~~~eA~~~l~~~l~~~~~~~~~~~  186 (355)
T cd05804         127 --AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM------------------QGRFKEGIAFMESWRDTWDCSSMLRG  186 (355)
T ss_pred             --cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH------------------cCCHHHHHHHHHhhhhccCCCcchhH
Confidence              5778999999999999888754 33333333322                  3678999999999998766433    


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS  494 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P  494 (676)
                      ..|...+.++...|++++|..++++++ ...|
T Consensus       187 ~~~~~la~~~~~~G~~~~A~~~~~~~~-~~~~  217 (355)
T cd05804         187 HNWWHLALFYLERGDYEAALAIYDTHI-APSA  217 (355)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHh-cccc
Confidence            357788999999999999999999988 5545

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.34  E-value=0.00016  Score=82.88  Aligned_cols=270  Identities=10%  Similarity=0.059  Sum_probs=159.5

Q ss_pred             CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHH
Q 005817          323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE  402 (676)
Q Consensus       323 ~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~  402 (676)
                      .|.+.+.|..++..+...   +..+.+..+++..++.+|+...+|...|-+++..             ++.+.+..+  .
T Consensus        27 ~p~n~~a~~~Li~~~~~~---~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~-------------~~~~~~~lv--~   88 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSE---NLTDEAKDICEEHLKEHKKSISALYISGILSLSR-------------RPLNDSNLL--N   88 (906)
T ss_pred             CcchHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh-------------cchhhhhhh--h
Confidence            467778888888777443   3567889999999999999999999888876552             344444444  4


Q ss_pred             HhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005817          403 ALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR  482 (676)
Q Consensus       403 al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~  482 (676)
                      ++...+...-|                                .+.+.|-.++...+.+.......+..+.+.|+.++|.
T Consensus        89 ~l~~~~~~~~~--------------------------------~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~  136 (906)
T PRK14720         89 LIDSFSQNLKW--------------------------------AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLK  136 (906)
T ss_pred             hhhhcccccch--------------------------------hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHH
Confidence            44444433222                                1222222223333444556666777777777777777


Q ss_pred             HHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHhhhH
Q 005817          483 KLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS----ALESESLWLMALKFFMNQKH  558 (676)
Q Consensus       483 ~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~----~~~~~~lW~~~l~~~~~~~~  558 (676)
                      .+|++++ +..|+++.+...++..+...           +++++.+++.+|+...-    ......+|..++.+-....+
T Consensus       137 ~~yer~L-~~D~~n~~aLNn~AY~~ae~-----------dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d  204 (906)
T PRK14720        137 GVWERLV-KADRDNPEIVKKLATSYEEE-----------DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFD  204 (906)
T ss_pred             HHHHHHH-hcCcccHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccch
Confidence            7777777 67777777777777665543           26777777777776421    12245677765543222223


Q ss_pred             HHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchH
Q 005817          559 YFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLV  638 (676)
Q Consensus       559 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~  638 (676)
                      .+..+.++......-..    ...+...........++++++..+++.++...|.+.......+.....        .+.
T Consensus       205 ~f~~i~~ki~~~~~~~~----~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~--------kY~  272 (906)
T PRK14720        205 FFLRIERKVLGHREFTR----LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE--------KYK  272 (906)
T ss_pred             HHHHHHHHHHhhhccch----hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH--------Hcc
Confidence            44444443322211000    011111222335567789999999999999888876655554443321        111


Q ss_pred             HHHHHHHHHHhhCC--CC-chHHHHHHHHHhh
Q 005817          639 NARKLFESALATYD--QN-TSLWRDYYSTETK  667 (676)
Q Consensus       639 ~aR~lye~al~~~~--~~-~~lW~~y~~fE~~  667 (676)
                      . ...|+.++...+  ++ ..+-..+.+||..
T Consensus       273 ~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~  303 (906)
T PRK14720        273 D-HSLLEDYLKMSDIGNNRKPVKDCIADFEKN  303 (906)
T ss_pred             C-cchHHHHHHHhccccCCccHHHHHHHHHHH
Confidence            2 556667777665  33 3666667777765

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=0.00044  Score=70.91  Aligned_cols=201  Identities=14%  Similarity=0.134  Sum_probs=138.6

Q ss_pred             hhHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~--~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~  467 (676)
                      .+++++|.+.|.+||....+  ..++..-+..                   ...|+++.|...|-+.+..-..+.++...
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfniglt~-------------------e~~~~ldeald~f~klh~il~nn~evl~q  563 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTA-------------------EALGNLDEALDCFLKLHAILLNNAEVLVQ  563 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcccH-------------------HHhcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            57899999999999975432  1133211111                   12578899999888877765667899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHH
Q 005817          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL  547 (676)
Q Consensus       468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~  547 (676)
                      .+.++....+..+|+.++.++. ...|+++.+....+.++-+.|+          -.++.+.+-...+-+|.+--.-=|.
T Consensus       564 ianiye~led~aqaie~~~q~~-slip~dp~ilskl~dlydqegd----------ksqafq~~ydsyryfp~nie~iewl  632 (840)
T KOG2003|consen  564 IANIYELLEDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGD----------KSQAFQCHYDSYRYFPCNIETIEWL  632 (840)
T ss_pred             HHHHHHHhhCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccc----------hhhhhhhhhhcccccCcchHHHHHH
Confidence            9999999999999999999999 8899999999999999987763          4556555555555566543222365


Q ss_pred             HHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005817          548 MALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE  625 (676)
Q Consensus       548 ~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE  625 (676)
                      .  .||..-+  +.....|++|.. +.|..     ..|..+.+....+.|++.+|..+|...-+-.|.+..-....+.+-
T Consensus       633 ~--ayyidtqf~ekai~y~ekaal-iqp~~-----~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~  704 (840)
T KOG2003|consen  633 A--AYYIDTQFSEKAINYFEKAAL-IQPNQ-----SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA  704 (840)
T ss_pred             H--HHHHhhHHHHHHHHHHHHHHh-cCccH-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence            3  1221111  111222344332 34443     478766778888999999999999998888888876555555554


Q ss_pred             hhc
Q 005817          626 NNL  628 (676)
Q Consensus       626 ~~~  628 (676)
                      ..+
T Consensus       705 ~dl  707 (840)
T KOG2003|consen  705 GDL  707 (840)
T ss_pred             ccc
Confidence            333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.31  E-value=1.3e-05  Score=72.85  Aligned_cols=89  Identities=11%  Similarity=-0.113  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Q 005817          144 LEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC  222 (676)
Q Consensus       144 ~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~  222 (676)
                      ..+|++++...|++   |...+......| +..+...|.+++...|.++..|...+.... ..|+++.|...|++++..+
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcC
Confidence            47899999999975   445555555556 577899999999999999999999998875 6889999999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 005817          223 PTSEELWVEYLRME  236 (676)
Q Consensus       223 p~~~~lW~~y~~~e  236 (676)
                      |+++..|...+...
T Consensus        89 p~~~~a~~~lg~~l  102 (144)
T PRK15359         89 ASHPEPVYQTGVCL  102 (144)
T ss_pred             CCCcHHHHHHHHHH
Confidence            99988888777643

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.30  E-value=2.9e-05  Score=80.69  Aligned_cols=177  Identities=12%  Similarity=0.119  Sum_probs=125.4

Q ss_pred             HHHHHHhhccCch-hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC
Q 005817          398 QVYEEALKNVPSS-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG  476 (676)
Q Consensus       398 ~~ye~al~~~~~~-~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~  476 (676)
                      .-|++.++..|.+ ..|..|+.+...........      ........++...+|++|+..+|.++.+++.|+....+..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~------~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~   79 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS------KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW   79 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc------hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            4578888888865 49999999988754321100      0012345678899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhh
Q 005817          477 KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQ  556 (676)
Q Consensus       477 ~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~  556 (676)
                      +.++..+.+++++ ..+|++..||..|+++......      + -.+..++++|.+||+.+.......        ....
T Consensus        80 ~~~~l~~~we~~l-~~~~~~~~LW~~yL~~~q~~~~------~-f~v~~~~~~y~~~l~~L~~~~~~~--------~~~~  143 (321)
T PF08424_consen   80 DSEKLAKKWEELL-FKNPGSPELWREYLDFRQSNFA------S-FTVSDVRDVYEKCLRALSRRRSGR--------MTSH  143 (321)
T ss_pred             CHHHHHHHHHHHH-HHCCCChHHHHHHHHHHHHHhc------c-CcHHHHHHHHHHHHHHHHHhhccc--------cccc
Confidence            9999899999999 8899999999999998876321      0 147899999999998654221100        0000


Q ss_pred             hHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcC
Q 005817          557 KHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL  610 (676)
Q Consensus       557 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~  610 (676)
                      . ....+-..+             ..++..+..|+.+.|-.+.|..+++-.++.
T Consensus       144 ~-~~~~~e~~~-------------l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  144 P-DLPELEEFM-------------LYVFLRLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             c-chhhHHHHH-------------HHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence            0 000000000             123335778888999999999999998764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.27  E-value=1.8e-05  Score=76.02  Aligned_cols=121  Identities=15%  Similarity=0.134  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI  424 (676)
Q Consensus       346 ~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~  424 (676)
                      .+.+...+.+.++..|++...|..+|..+..             .++++.|...|+++++..|.+. ++..|+.......
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~-------------~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~  121 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLW-------------RNDYDNALLAYRQALQLRGENAELYAALATVLYYQA  121 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            3456667888999999999999999999876             5789999999999999988654 7766665332110


Q ss_pred             cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD  495 (676)
Q Consensus       425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~  495 (676)
                         +            +...+.|+.++++++..+|.++..+...+..+.+.|++++|...+++++ +..|.
T Consensus       122 ---g------------~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL-~l~~~  176 (198)
T PRK10370        122 ---G------------QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL-DLNSP  176 (198)
T ss_pred             ---C------------CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC
Confidence               0            1125899999999999999999999999999999999999999999999 65554

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=0.00039  Score=66.62  Aligned_cols=156  Identities=14%  Similarity=0.075  Sum_probs=123.7

Q ss_pred             cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHH
Q 005817          345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDM  423 (676)
Q Consensus       345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~  423 (676)
                      ....|...++++...||.++.+-...|.+.-             ..+..+.|.++|+..|...|++. +...=+....  
T Consensus        67 ~~~lAq~C~~~L~~~fp~S~RV~~lkam~lE-------------a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk--  131 (289)
T KOG3060|consen   67 RDDLAQKCINQLRDRFPGSKRVGKLKAMLLE-------------ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK--  131 (289)
T ss_pred             chHHHHHHHHHHHHhCCCChhHHHHHHHHHH-------------HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH--
Confidence            4568999999999999999988777776552             25789999999999999999865 2221111111  


Q ss_pred             hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHH
Q 005817          424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR  503 (676)
Q Consensus       424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~  503 (676)
                                      .+|..-.|+..+..-++..+.+.+.|...++++...|.+++|.-.+++.+ =..|.++....++
T Consensus       132 ----------------a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l-l~~P~n~l~f~rl  194 (289)
T KOG3060|consen  132 ----------------AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL-LIQPFNPLYFQRL  194 (289)
T ss_pred             ----------------HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-HcCCCcHHHHHHH
Confidence                            13444567777777888899999999999999999999999999999999 7899999999999


Q ss_pred             HHHHHHhccccCCCCChhchHHHHHHHHHHHhhcCh
Q 005817          504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA  539 (676)
Q Consensus       504 i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~  539 (676)
                      +++.-..|.       -.+++.+++.|.+|++..|.
T Consensus       195 ae~~Yt~gg-------~eN~~~arkyy~~alkl~~~  223 (289)
T KOG3060|consen  195 AEVLYTQGG-------AENLELARKYYERALKLNPK  223 (289)
T ss_pred             HHHHHHHhh-------HHHHHHHHHHHHHHHHhChH
Confidence            987765442       12678899999999998773

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.24  E-value=0.0001  Score=73.23  Aligned_cols=182  Identities=16%  Similarity=0.060  Sum_probs=119.5

Q ss_pred             HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh---hHHHHHHHhccccCCC
Q 005817          305 REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK---YWDWLARLKMTDSVSK  381 (676)
Q Consensus       305 ~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~---~w~~la~~~~~~~~~~  381 (676)
                      ..++++.|...|++++...|++......++.....+...+..+.+...++++++.+|+++.   +|..++..+...... 
T Consensus        45 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~-  123 (235)
T TIGR03302        45 DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR-  123 (235)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc-
Confidence            4568899999999999999987543333333333333334688999999999999999876   577777666432100 


Q ss_pred             CCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHH--HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC
Q 005817          382 DGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM--DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG  458 (676)
Q Consensus       382 ~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~  458 (676)
                          .....++.+.|...|++++...|... .+..+.....  .........  + +-.....|++..|...|++++...
T Consensus       124 ----~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~--~-a~~~~~~g~~~~A~~~~~~al~~~  196 (235)
T TIGR03302       124 ----VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELY--V-ARFYLKRGAYVAAINRFETVVENY  196 (235)
T ss_pred             ----ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHcCChHHHHHHHHHHHHHC
Confidence                00114678999999999999888654 3322211100  000000000  0 000012477899999999999886


Q ss_pred             CCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817          459 CLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD  495 (676)
Q Consensus       459 p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~  495 (676)
                      |.+   ++.|...+..+...|++++|...++.+. ..+|.
T Consensus       197 p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~-~~~~~  235 (235)
T TIGR03302       197 PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG-ANYPD  235 (235)
T ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC
Confidence            654   5789999999999999999999888877 66663

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.22  E-value=3.2e-05  Score=69.40  Aligned_cols=91  Identities=10%  Similarity=-0.005  Sum_probs=78.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Q 005817          145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (676)
Q Consensus       145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p  223 (676)
                      ..|++++...|.+...-..++......+ ...+...|++++..+|.++.+|...+.... ..|+++.|..+|++++...|
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCC
Confidence            4688999999999888777888777766 578899999999999999999999999886 57899999999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 005817          224 TSEELWVEYLRME  236 (676)
Q Consensus       224 ~~~~lW~~y~~~e  236 (676)
                      ++..+|...+.+.
T Consensus        83 ~~~~~~~~la~~~   95 (135)
T TIGR02552        83 DDPRPYFHAAECL   95 (135)
T ss_pred             CChHHHHHHHHHH
Confidence            9888887666543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=98.21  E-value=1.9e-05  Score=69.50  Aligned_cols=111  Identities=19%  Similarity=0.334  Sum_probs=85.0

Q ss_pred             HHhhHHhHHHhhCCC---CChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHH
Q 005817           75 VKQRRKFEYRLKRPS---PLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAV  151 (676)
Q Consensus        75 ~~~R~~fE~~l~~~~---~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral  151 (676)
                      -++|..||..|..-.   ..+..|++||+|-....                        +.    .....+...+++|++
T Consensus         2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~------------------------p~----~~~~~~L~~lLer~~   53 (126)
T PF08311_consen    2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENY------------------------PS----GGKQSGLLELLERCI   53 (126)
T ss_dssp             HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHC------------------------TT----CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHC------------------------CC----CCchhHHHHHHHHHH
Confidence            468999999999865   55788999999965421                        10    112456678999999


Q ss_pred             HhCCCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005817          152 MRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (676)
Q Consensus       152 ~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral  219 (676)
                      +.|+++         +.+|+.|++++     .....+|..+...  .-..+.+|+.+|.+. +..|++..|..+|++||
T Consensus        54 ~~f~~~~~Y~nD~RylkiWi~ya~~~-----~~~~~if~~l~~~~IG~~~A~fY~~wA~~l-e~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   54 RKFKDDERYKNDERYLKIWIKYADLS-----SDPREIFKFLYSKGIGTKLALFYEEWAEFL-EKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHTTSGGGTT-HHHHHHHHHHHTTB-----SHHHHHHHHHHHHTTSTTBHHHHHHHHHHH-HHTT-HHHHHHHHHHHH
T ss_pred             HHHhhhHhhcCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHcCccHHHHHHHHHHHHHH-HHcCCHHHHHHHHHhhC
Confidence            999876         36888888764     3678888888774  345789999999998 58899999999999996

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.21  E-value=0.00014  Score=71.76  Aligned_cols=224  Identities=11%  Similarity=0.093  Sum_probs=163.7

Q ss_pred             Hcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005817          170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV  248 (676)
Q Consensus       170 ~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~  248 (676)
                      ..| ..++.+.|+.+|...|. ++.++...+... .......|..+|..++...|.+...-...+++....         
T Consensus       235 rLgm~r~AekqlqssL~q~~~-~dTfllLskvY~-ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam---------  303 (478)
T KOG1129|consen  235 RLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQ-RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM---------  303 (478)
T ss_pred             HhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHH-HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH---------
Confidence            346 47889999999999985 777888888774 566889999999999999998766655555543321         


Q ss_pred             HhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh
Q 005817          249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN  328 (676)
Q Consensus       249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~  328 (676)
                                                                                ++.+.|..+|+.+++..|.+++
T Consensus       304 ----------------------------------------------------------~~~~~a~~lYk~vlk~~~~nvE  325 (478)
T KOG1129|consen  304 ----------------------------------------------------------EQQEDALQLYKLVLKLHPINVE  325 (478)
T ss_pred             ----------------------------------------------------------HhHHHHHHHHHHHHhcCCccce
Confidence                                                                      1345677888888888887754


Q ss_pred             HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817          329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP  408 (676)
Q Consensus       329 ~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~  408 (676)
                      ...-.   ...+-..++++.+...|.+++..--.+|++...++--.+-             -++++-+..-|++|+....
T Consensus       326 aiAci---a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-------------aqQ~D~~L~sf~RAlstat  389 (478)
T KOG1129|consen  326 AIACI---AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-------------AQQIDLVLPSFQRALSTAT  389 (478)
T ss_pred             eeeee---eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-------------hcchhhhHHHHHHHHhhcc
Confidence            32110   0011122467888888888888888888888777766553             3578889999999987643


Q ss_pred             c--h--hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 005817          409 S--S--MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKL  484 (676)
Q Consensus       409 ~--~--~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l  484 (676)
                      .  .  .+|-.     ......             .-|+..-|..-|.-|+..++.+.+.+...+-+..+.|+++.|+.+
T Consensus       390 ~~~~aaDvWYN-----lg~vaV-------------~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsl  451 (478)
T KOG1129|consen  390 QPGQAADVWYN-----LGFVAV-------------TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSL  451 (478)
T ss_pred             Ccchhhhhhhc-----cceeEE-------------eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence            2  2  26621     111110             126688888899999999999999999999999999999999999


Q ss_pred             HHHHhhccCCChH
Q 005817          485 AAKLCSGKLSDSV  497 (676)
Q Consensus       485 ~~~al~~~~P~~~  497 (676)
                      +..|. ...|+..
T Consensus       452 l~~A~-s~~P~m~  463 (478)
T KOG1129|consen  452 LNAAK-SVMPDMA  463 (478)
T ss_pred             HHHhh-hhCcccc
Confidence            99998 7788743

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.19  E-value=0.0038  Score=68.58  Aligned_cols=143  Identities=15%  Similarity=0.112  Sum_probs=94.4

Q ss_pred             CCcHHHHHHH--HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          459 CLTEDIAHRY--VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       459 p~~~~lw~~~--~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      |.+.-+|..|  ++.+...|++++|+...++|+ ...|+.++++...+.++.+.|+          +.++.+.++.|-..
T Consensus       189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI-~htPt~~ely~~KarilKh~G~----------~~~Aa~~~~~Ar~L  257 (517)
T PF12569_consen  189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI-EHTPTLVELYMTKARILKHAGD----------LKEAAEAMDEAREL  257 (517)
T ss_pred             CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhC
Confidence            3344578776  888889999999999999999 8999999999999999988875          45443333333211


Q ss_pred             cChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCC--CCC
Q 005817          537 VSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALP--RPG  614 (676)
Q Consensus       537 ~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~--p~~  614 (676)
                                                         ...+     --+....+.+..+.|.+++|.++.....+..  |.+
T Consensus       258 -----------------------------------D~~D-----RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~  297 (517)
T PF12569_consen  258 -----------------------------------DLAD-----RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS  297 (517)
T ss_pred             -----------------------------------Chhh-----HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence                                               0110     0112245677888999999999988887644  222


Q ss_pred             HHHHHHHHHHHhhccCC-CCccchHHHHHHHHHHHhhCC
Q 005817          615 LVLYQNCIELENNLASV-GDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       615 ~~l~~~~i~lE~~~~~~-~~~~~~~~aR~lye~al~~~~  652 (676)
                      ...=++++.++...|.. ...+++..|.+-|......|.
T Consensus       298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            22336666665543310 012267777777777777654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.17  E-value=6.4e-05  Score=67.47  Aligned_cols=118  Identities=12%  Similarity=-0.032  Sum_probs=94.1

Q ss_pred             HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcccc
Q 005817          352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEE  430 (676)
Q Consensus       352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d  430 (676)
                      .+++++...|++......++..++.             .++++.|...|++++...|... .|.....+...        
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~-------------~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~--------   63 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQ-------------QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM--------   63 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHH-------------cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--------
Confidence            4566777778776666666766654             4778999999999998877654 55444433332        


Q ss_pred             ccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817          431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL  501 (676)
Q Consensus       431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~  501 (676)
                                .++++.|...|++++..+|.+++.|...+..+...|++++|...+++++ +..|++...+.
T Consensus        64 ----------~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~  123 (135)
T TIGR02552        64 ----------LKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAI-EICGENPEYSE  123 (135)
T ss_pred             ----------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhccccchHHH
Confidence                      4678999999999999999999999999999999999999999999999 88898766443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.16  E-value=0.00042  Score=75.19  Aligned_cols=232  Identities=16%  Similarity=0.116  Sum_probs=134.4

Q ss_pred             CcHHHHHHHHHHHHhc--------CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC-----ch
Q 005817          344 QSDDMHDKILSDMQRD--------FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP-----SS  410 (676)
Q Consensus       344 ~~~~~a~~il~~~~~~--------~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~-----~~  410 (676)
                      +..+.+...+..+++.        +|.=......+|..+..             .+++.+|..+|++|++...     ++
T Consensus       213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-------------~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-------------LGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-------------hccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3455666666665554        23223333346777654             5788999999999997532     11


Q ss_pred             h-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005817          411 M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC-LTEDIAHRYVTLYLQLGKLDEARKLAAKL  488 (676)
Q Consensus       411 ~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p-~~~~lw~~~~~l~~~~~~~~~A~~l~~~a  488 (676)
                      . .-..+.++-.-.+....-+        ......++|++|+++.....+ .-.......+..+...+.+++|..++.++
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~--------EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a  351 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFA--------EAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA  351 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChH--------HHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            1 2222222222122110000        011234455555555222211 12344566677777889999999999988


Q ss_pred             hhcc--------CCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc-------ChhhhHHHHHHHHHHH
Q 005817          489 CSGK--------LSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV-------SALESESLWLMALKFF  553 (676)
Q Consensus       489 l~~~--------~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~-------~~~~~~~lW~~~l~~~  553 (676)
                      + +.        +|.-..+...++.+....|.          ..+++++|++|++..       ......+||.+...+.
T Consensus       352 l-~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk----------~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~  420 (508)
T KOG1840|consen  352 L-KIYLDAPGEDNVNLAKIYANLAELYLKMGK----------YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE  420 (508)
T ss_pred             H-HHHHhhccccchHHHHHHHHHHHHHHHhcc----------hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence            8 43        22235666667777777664          789999999999863       2233578999877765


Q ss_pred             Hhhh-HHHHHHHHHHHHhhhhCCCCCCCcchHHHH---HHHHHHhcCHHHHHHHHHHHHc
Q 005817          554 MNQK-HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLA  609 (676)
Q Consensus       554 ~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y---~~~~~~~g~~~~Ar~iy~~al~  609 (676)
                      +... .+...+|..+..+. +..|. ..+.+...|   +..+...|+++.|.++-++++.
T Consensus       421 ~~k~~~~a~~l~~~~~~i~-~~~g~-~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  421 ELKKYEEAEQLFEEAKDIM-KLCGP-DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HhcccchHHHHHHHHHHHH-HHhCC-CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            4433 45666666665544 33322 123333344   4456678999999999998874

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.15  E-value=6.9e-05  Score=73.88  Aligned_cols=221  Identities=11%  Similarity=-0.009  Sum_probs=149.8

Q ss_pred             hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~  469 (676)
                      .+-+.+|...++.+|+..|...-+....+....                  -+.+.+|..+|...++..|.+..+.+..+
T Consensus       236 Lgm~r~AekqlqssL~q~~~~dTfllLskvY~r------------------idQP~~AL~~~~~gld~fP~~VT~l~g~A  297 (478)
T KOG1129|consen  236 LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQR------------------IDQPERALLVIGEGLDSFPFDVTYLLGQA  297 (478)
T ss_pred             hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHH------------------hccHHHHHHHHhhhhhcCCchhhhhhhhH
Confidence            355778899999999887755433222222222                  14578999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh--cChhh--hHHH
Q 005817          470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK--VSALE--SESL  545 (676)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~--~~~~~--~~~l  545 (676)
                      .+....++.++|.++|+.++ +.+|.+++.-.--+.-+. .+         ++++-+...|.+.|+.  .++.-  ...|
T Consensus       298 Ri~eam~~~~~a~~lYk~vl-k~~~~nvEaiAcia~~yf-Y~---------~~PE~AlryYRRiLqmG~~speLf~NigL  366 (478)
T KOG1129|consen  298 RIHEAMEQQEDALQLYKLVL-KLHPINVEAIACIAVGYF-YD---------NNPEMALRYYRRILQMGAQSPELFCNIGL  366 (478)
T ss_pred             HHHHHHHhHHHHHHHHHHHH-hcCCccceeeeeeeeccc-cC---------CChHHHHHHHHHHHHhcCCChHHHhhHHH
Confidence            99999999999999999999 888877542211110000 11         2467777788888774  22221  1233


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhh-hCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005817          546 WLMALKFFMNQKHYFDKLVEIALISVA-KDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIEL  624 (676)
Q Consensus       546 W~~~l~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~l  624 (676)
                      -.+|.+.++-    .-.-|++|+.... |+.   ....|+ .........|++.-|...|.-|+...+....-+....-|
T Consensus       367 CC~yaqQ~D~----~L~sf~RAlstat~~~~---aaDvWY-Nlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL  438 (478)
T KOG1129|consen  367 CCLYAQQIDL----VLPSFQRALSTATQPGQ---AADVWY-NLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL  438 (478)
T ss_pred             HHHhhcchhh----hHHHHHHHHhhccCcch---hhhhhh-ccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence            3344444432    2233444443222 221   112232 222334567999999999999999888888888888889


Q ss_pred             HhhccCCCCccchHHHHHHHHHHHhhCCC
Q 005817          625 ENNLASVGDKDSLVNARKLFESALATYDQ  653 (676)
Q Consensus       625 E~~~~~~~~~~~~~~aR~lye~al~~~~~  653 (676)
                      +...|      +++.||.++..|....|.
T Consensus       439 ~~r~G------~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  439 AARSG------DILGARSLLNAAKSVMPD  461 (478)
T ss_pred             HhhcC------chHHHHHHHHHhhhhCcc
Confidence            98888      899999999999998884

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.14  E-value=0.00026  Score=70.32  Aligned_cols=170  Identities=12%  Similarity=0.095  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-------C
Q 005817          140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPG---VWIYAAAWEFDH-------N  205 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~---lW~~~a~~e~~~-------~  205 (676)
                      ...+...|++++..+|++.   ..|...+......+ ...+...|++++..+|+++.   .|...+......       .
T Consensus        49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~  128 (235)
T TIGR03302        49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQ  128 (235)
T ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCH
Confidence            5678899999999999876   46666766666666 57899999999999998776   465555554422       2


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCC
Q 005817          206 LNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVE  285 (676)
Q Consensus       206 ~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (676)
                      |+.+.|...|+++++.+|++...|..+..+............ .+                                   
T Consensus       129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~-~~-----------------------------------  172 (235)
T TIGR03302       129 TAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKEL-YV-----------------------------------  172 (235)
T ss_pred             HHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHH-HH-----------------------------------
Confidence            678899999999999999998777666554332211000000 00                                   


Q ss_pred             CCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCC
Q 005817          286 NTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLV  362 (676)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~  362 (676)
                                    ..-.+..+++..|...|++++...|+++   +.+..+..++..   .+..+.+...++.+...+|+
T Consensus       173 --------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~---lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       173 --------------ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK---LGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             --------------HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCC
Confidence                          0011223578899999999999988754   344444333333   34567888889998888874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.14  E-value=0.001  Score=68.38  Aligned_cols=165  Identities=13%  Similarity=0.120  Sum_probs=119.3

Q ss_pred             hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~  387 (676)
                      +++.|...|-+....+-++.++..++..+|...+   ....+...+-++...-|++|.+...++.++-.           
T Consensus       539 ~ldeald~f~klh~il~nn~evl~qianiye~le---d~aqaie~~~q~~slip~dp~ilskl~dlydq-----------  604 (840)
T KOG2003|consen  539 NLDEALDCFLKLHAILLNNAEVLVQIANIYELLE---DPAQAIELLMQANSLIPNDPAILSKLADLYDQ-----------  604 (840)
T ss_pred             CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh---CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-----------
Confidence            5667777777666666667777777777877665   35678888899999999999999999988843           


Q ss_pred             cchhHHHHHHHHHHHHhhccCchh---HHH--HHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH
Q 005817          388 IVPSQMQKAIQVYEEALKNVPSSM---IFD--LYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE  462 (676)
Q Consensus       388 ~~~~~~~~A~~~ye~al~~~~~~~---lw~--~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~  462 (676)
                        .++-..|-+.+=..-...|.+-   -|.  .|++                      ....++++..|++|-...|...
T Consensus       605 --egdksqafq~~ydsyryfp~nie~iewl~ayyid----------------------tqf~ekai~y~ekaaliqp~~~  660 (840)
T KOG2003|consen  605 --EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----------------------TQFSEKAINYFEKAALIQPNQS  660 (840)
T ss_pred             --ccchhhhhhhhhhcccccCcchHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHHhcCccHH
Confidence              2344556665555555566432   342  2221                      1345789999999988878765


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (676)
                      ..-+.-+..+.+.|++++|..+|...- +.+|.+.+.....+.+.-..|
T Consensus       661 kwqlmiasc~rrsgnyqka~d~yk~~h-rkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLYKDIH-RKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHH-HhCccchHHHHHHHHHhcccc
Confidence            555556788889999999999999988 899999888777666554333

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.13  E-value=0.0034  Score=66.49  Aligned_cols=293  Identities=10%  Similarity=-0.019  Sum_probs=163.5

Q ss_pred             hHHHHHHHHHHHhcCCCchhHHH-HHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817          309 LRVLQTIYSGAVEALPSSFNLRQ-RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (676)
Q Consensus       309 ~~~a~~iy~~Al~~~p~~~~~~~-~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~  387 (676)
                      .+.+...|.++.+..|.+..-+. .++.....+. .+..+.+...+++++..+|++...+.. +........        
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~--------   91 (355)
T cd05804          22 RPAAAAKAAAAAQALAARATERERAHVEALSAWI-AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGD--------   91 (355)
T ss_pred             cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcc--------
Confidence            34456677777666554422211 1222222222 235678899999999999999877653 222211100        


Q ss_pred             cchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817          388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (676)
Q Consensus       388 ~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~  467 (676)
                       ..+....+...++......|..........+...                 ..|.++.|...+++++..+|.++..+..
T Consensus        92 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-----------------~~G~~~~A~~~~~~al~~~p~~~~~~~~  153 (355)
T cd05804          92 -FSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-----------------EAGQYDRAEEAARRALELNPDDAWAVHA  153 (355)
T ss_pred             -cccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-----------------HcCCHHHHHHHHHHHHhhCCCCcHHHHH
Confidence             0122334444444422222322111111111111                 1477899999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCCh----HHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh-h
Q 005817          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDS----VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-S  542 (676)
Q Consensus       468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~----~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~-~  542 (676)
                      ++..+...|++++|...+++++ ...|.+    ...|...+.+....|          +.+++..+|++++..-|... .
T Consensus       154 la~i~~~~g~~~eA~~~l~~~l-~~~~~~~~~~~~~~~~la~~~~~~G----------~~~~A~~~~~~~~~~~~~~~~~  222 (355)
T cd05804         154 VAHVLEMQGRFKEGIAFMESWR-DTWDCSSMLRGHNWWHLALFYLERG----------DYEAALAIYDTHIAPSAESDPA  222 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHhhh-hccCCCcchhHHHHHHHHHHHHHCC----------CHHHHHHHHHHHhccccCCChH
Confidence            9999999999999999999999 766643    235666677776666          47999999999874322111 0


Q ss_pred             H----HHHHHHHHHHHhhh---HHHHHHHHHHHHhhhhCCCCCCCcchH-HHHHHHHHHhcCHHHHHHHHHHHHcCCCC-
Q 005817          543 E----SLWLMALKFFMNQK---HYFDKLVEIALISVAKDGGGESGFSLP-SAIINLVIQKDGIQQAREMYKRFLALPRP-  613 (676)
Q Consensus       543 ~----~lW~~~l~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~y~~~~~~~g~~~~Ar~iy~~al~~~p~-  613 (676)
                      .    ..+..+........   ...+.+....    .+.... ...... ..++......|+.+.|..+.+.+...... 
T Consensus       223 ~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~----~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~  297 (355)
T cd05804         223 LDLLDAASLLWRLELAGHVDVGDRWEDLADYA----AWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSA  297 (355)
T ss_pred             HHHhhHHHHHHHHHhcCCCChHHHHHHHHHHH----HhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence            0    11222111111111   1222222221    111100 011111 13444566688899999999887543211 


Q ss_pred             --C------HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhC
Q 005817          614 --G------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATY  651 (676)
Q Consensus       614 --~------~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~  651 (676)
                        .      ..+..-........|      +.+.|..+...|+...
T Consensus       298 ~~~~~~~~~~~~~~l~A~~~~~~g------~~~~A~~~L~~al~~a  337 (355)
T cd05804         298 DDNKQPARDVGLPLAEALYAFAEG------NYATALELLGPVRDDL  337 (355)
T ss_pred             CchhhhHHhhhHHHHHHHHHHHcC------CHHHHHHHHHHHHHHH
Confidence              1      112222233344556      8899999999998875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.12  E-value=0.0041  Score=70.14  Aligned_cols=148  Identities=13%  Similarity=0.085  Sum_probs=108.1

Q ss_pred             hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh--hHHHHHHHhccccCCCCCCC
Q 005817          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK--YWDWLARLKMTDSVSKDGTS  385 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~--~w~~la~~~~~~~~~~~~~~  385 (676)
                      +..+|+..|++|.+..+++.+-+....+.|++-+   +.+.+..+.-..-+..|--..  -|...+-++++         
T Consensus       507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~---~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe---------  574 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEES---TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE---------  574 (1238)
T ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc---cHHHHHHHHHHHhhhchHHHHHhhhhhccccccC---------
Confidence            4467889999999999998888888888877533   567777776555555554432  35555555554         


Q ss_pred             cCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHH
Q 005817          386 EDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI  464 (676)
Q Consensus       386 ~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~l  464 (676)
                          .+++..|+.-|+.|+...|.+. .|..--   +. +.              ..|.+..|..+|.+|...+|.+.-.
T Consensus       575 ----a~n~h~aV~~fQsALR~dPkD~n~W~gLG---eA-Y~--------------~sGry~~AlKvF~kAs~LrP~s~y~  632 (1238)
T KOG1127|consen  575 ----AHNLHGAVCEFQSALRTDPKDYNLWLGLG---EA-YP--------------ESGRYSHALKVFTKASLLRPLSKYG  632 (1238)
T ss_pred             ----ccchhhHHHHHHHHhcCCchhHHHHHHHH---HH-HH--------------hcCceehHHHhhhhhHhcCcHhHHH
Confidence                4667889999999999888654 664322   22 11              1477889999999999999887655


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          465 AHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       465 w~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      -+.-+.++..+|.+.+|+..+...+
T Consensus       633 ~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  633 RFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            5556778889999999999988888

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=0.0012  Score=63.34  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=86.4

Q ss_pred             hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~  387 (676)
                      .++.|..+|++.++-.|++.-++.+=+-+....   +..-.+.+-+...+..||.+.++|..+|.+|+.           
T Consensus       101 ~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~---GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-----------  166 (289)
T KOG3060|consen  101 NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ---GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-----------  166 (289)
T ss_pred             chhhHHHHHHHHhccCcchhHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----------
Confidence            445677777777777777655544322222222   223466667778888999999999999999987           


Q ss_pred             cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc
Q 005817          388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT  461 (676)
Q Consensus       388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~  461 (676)
                        .+.+++|.-.||+.+-..|.+. .+..|++..-...   +            ..++..++..|++|+..+|.+
T Consensus       167 --~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g---g------------~eN~~~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  167 --EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG---G------------AENLELARKYYERALKLNPKN  224 (289)
T ss_pred             --HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh---h------------HHHHHHHHHHHHHHHHhChHh
Confidence              5889999999999999889877 4555555443221   0            246788899999999887744

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.11  E-value=0.0076  Score=60.29  Aligned_cols=306  Identities=11%  Similarity=0.033  Sum_probs=186.6

Q ss_pred             hhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCC
Q 005817          302 DLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK  381 (676)
Q Consensus       302 ~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~  381 (676)
                      .+|..+.+..|..-|..||+-.|++......-...|-.++   ....+..-+++.++..|+-..+.+..+...++     
T Consensus        47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmG---ksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-----  118 (504)
T KOG0624|consen   47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMG---KSKAALQDLSRVLELKPDFMAARIQRGVVLLK-----  118 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhc---CCccchhhHHHHHhcCccHHHHHHHhchhhhh-----
Confidence            4445567888999999999998887543332222333333   33456667888889999876666666666655     


Q ss_pred             CCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHH---H------HHhcCccccccCCCCChhhhhhHHHHHHHH
Q 005817          382 DGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFL---M------DMIAPKKEETRDSELPSHVEHYISHLLTVY  451 (676)
Q Consensus       382 ~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~---~------~~~~~~~~d~~~~~~~~~~~~~~~~a~~iy  451 (676)
                              .|.+++|.+-|...|+..|++. .-..+.++.   +      +..+.            ...|+...+.+..
T Consensus       119 --------~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~------------~~~GD~~~ai~~i  178 (504)
T KOG0624|consen  119 --------QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA------------SGSGDCQNAIEMI  178 (504)
T ss_pred             --------cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH------------hcCCchhhHHHHH
Confidence                    5889999999999999888532 112222211   1      11100            1135678888888


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHH
Q 005817          452 EKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK  531 (676)
Q Consensus       452 e~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~  531 (676)
                      ...++..|=+..++..-+..+..-|.+..|+.=+..+- +...+|.+....-.+++-..|          +.+.......
T Consensus       179 ~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as-kLs~DnTe~~ykis~L~Y~vg----------d~~~sL~~iR  247 (504)
T KOG0624|consen  179 THLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS-KLSQDNTEGHYKISQLLYTVG----------DAENSLKEIR  247 (504)
T ss_pred             HHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccccchHHHHHHHHHHHhhh----------hHHHHHHHHH
Confidence            99999989899999999999999999999988777776 666778888877777776655          3555555567


Q ss_pred             HHHhhcChhh-hHHHHHHHHHHHHhhhHHHH---------HHHHHHHHh--hhhCCCCCCCcchHHHHHHHHHHhcCHHH
Q 005817          532 CILTKVSALE-SESLWLMALKFFMNQKHYFD---------KLVEIALIS--VAKDGGGESGFSLPSAIINLVIQKDGIQQ  599 (676)
Q Consensus       532 ~Al~~~~~~~-~~~lW~~~l~~~~~~~~~~~---------~~~~~a~~~--~~~~~~~~~~~~~~~~y~~~~~~~g~~~~  599 (676)
                      ++|+.-|..+ +.+++.. +....+..+.++         ..++...+.  ..|.... -....+...-.....-|.+-+
T Consensus       248 ECLKldpdHK~Cf~~YKk-lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~-ir~~~~r~~c~C~~~d~~~~e  325 (504)
T KOG0624|consen  248 ECLKLDPDHKLCFPFYKK-LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM-IRYNGFRVLCTCYREDEQFGE  325 (504)
T ss_pred             HHHccCcchhhHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc-eeeeeeheeeecccccCCHHH
Confidence            7777554322 2233321 111111111111         111111111  1222100 000000011122334678889


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCC
Q 005817          600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN  654 (676)
Q Consensus       600 Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~  654 (676)
                      |.+.-..++...|.+...+..-++-...-.      +++.|..-|++|++.++++
T Consensus       326 AiqqC~evL~~d~~dv~~l~dRAeA~l~dE------~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  326 AIQQCKEVLDIDPDDVQVLCDRAEAYLGDE------MYDDAIHDYEKALELNESN  374 (504)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHhcCccc
Confidence            999999999988888876655443332322      7788888888888887744

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.07  E-value=0.001  Score=72.15  Aligned_cols=234  Identities=15%  Similarity=0.107  Sum_probs=137.0

Q ss_pred             HHHcc-CchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHH
Q 005817          168 CRQRK-NGRMKKVLAQVIRF--------HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC-----PTSEELWVEYL  233 (676)
Q Consensus       168 ~~~~~-~~~~~~~~~ral~~--------~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~-----p~~~~lW~~y~  233 (676)
                      +...| ++.+..++.+|++.        ||.....-..++.+.. ..+++..|..+|++||.+.     ++++.+=..+.
T Consensus       209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~  287 (508)
T KOG1840|consen  209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLN  287 (508)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            33344 57788888888887        6665555545666664 5678888888888888654     23444444444


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHH--hhhHH
Q 005817          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE--QGLRV  311 (676)
Q Consensus       234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  311 (676)
                      ++-..+..                                                           .+.|.+  .-++.
T Consensus       288 nLa~ly~~-----------------------------------------------------------~GKf~EA~~~~e~  308 (508)
T KOG1840|consen  288 NLAVLYYK-----------------------------------------------------------QGKFAEAEEYCER  308 (508)
T ss_pred             HHHHHHhc-----------------------------------------------------------cCChHHHHHHHHH
Confidence            43332210                                                           000000  02345


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcC---C--CC---hhhHHHHHHHhccccCCCCC
Q 005817          312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF---L--VD---PKYWDWLARLKMTDSVSKDG  383 (676)
Q Consensus       312 a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~---p--~~---~~~w~~la~~~~~~~~~~~~  383 (676)
                      |..|+++-  ......++...+.++...+...+..+.+..++..+++..   |  ++   +.....+|..++.       
T Consensus       309 Al~I~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-------  379 (508)
T KOG1840|consen  309 ALEIYEKL--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-------  379 (508)
T ss_pred             HHHHHHHh--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-------
Confidence            55555551  123344666666666665554445566666665554422   1  22   4456777877765       


Q ss_pred             CCcCcchhHHHHHHHHHHHHhhccC----c------hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817          384 TSEDIVPSQMQKAIQVYEEALKNVP----S------SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (676)
Q Consensus       384 ~~~~~~~~~~~~A~~~ye~al~~~~----~------~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~  453 (676)
                            .|++++|.+.|++|++...    .      ..+|..-....+. ... . +         ...-+.++..++ +
T Consensus       380 ------~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~-k~~-~-~---------a~~l~~~~~~i~-~  440 (508)
T KOG1840|consen  380 ------MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL-KKY-E-E---------AEQLFEEAKDIM-K  440 (508)
T ss_pred             ------hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh-ccc-c-h---------HHHHHHHHHHHH-H
Confidence                  5889999999999998641    1      1266554443221 100 0 0         012345555555 3


Q ss_pred             HHHc-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          454 AEAM-GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       454 al~~-~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      +... .|.....+...+..|...|+++.|.++.++++
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3332 34556678899999999999999999999888

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.01  E-value=0.0003  Score=79.92  Aligned_cols=139  Identities=12%  Similarity=-0.007  Sum_probs=110.7

Q ss_pred             CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHH
Q 005817          324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEA  403 (676)
Q Consensus       324 p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~a  403 (676)
                      |.+.+....+.++..+.   +..+.+..+++.+++..|++..++..+|.....             .+++++|+..++++
T Consensus        83 ~~~~~~~~~La~i~~~~---g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-------------~~~~eeA~~~~~~~  146 (694)
T PRK15179         83 PHTELFQVLVARALEAA---HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-------------QQGIEAGRAEIELY  146 (694)
T ss_pred             cccHHHHHHHHHHHHHc---CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-------------hccHHHHHHHHHHH
Confidence            55556655555544443   357899999999999999999999999988765             57899999999999


Q ss_pred             hhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005817          404 LKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR  482 (676)
Q Consensus       404 l~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~  482 (676)
                      +...|.+. .-......+.+                  .|.+++|..+|++++..+|.+++.|+.|+..+...|+.++|.
T Consensus       147 l~~~p~~~~~~~~~a~~l~~------------------~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~  208 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDE------------------IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR  208 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHH------------------hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            99988754 22222222222                  377999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCh
Q 005817          483 KLAAKLCSGKLSDS  496 (676)
Q Consensus       483 ~l~~~al~~~~P~~  496 (676)
                      ..|++|+...-|.+
T Consensus       209 ~~~~~a~~~~~~~~  222 (694)
T PRK15179        209 DVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHHHHHhhCcch
Confidence            99999994444444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=0.039  Score=58.66  Aligned_cols=368  Identities=11%  Similarity=0.026  Sum_probs=208.2

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....+...|-.|+...|++.-|+.+-..-..+.+ +..+.+=-.+++.++|.-++.|-..+.-.+ ..|+++.|+..|..
T Consensus        17 d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~-~lg~~~eA~~ay~~   95 (539)
T KOG0548|consen   17 DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF-GLGDYEEAILAYSE   95 (539)
T ss_pred             cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH-hcccHHHHHHHHHH
Confidence            4678899999999999999888877666655555 566666667788999999999988877665 67899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHH------------------------HHHHHhccccccccccccch---------
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLK------------------------ARKVALGEDKGTLVRDHRDA---------  264 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~------------------------~r~~~l~~~~~~~~~~~~~~---------  264 (676)
                      ||...|++..|..-....+........                        +...++..    .+++|-+.         
T Consensus        96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~----~~~~p~~l~~~l~d~r~  171 (539)
T KOG0548|consen   96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEI----IQKNPTSLKLYLNDPRL  171 (539)
T ss_pred             HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHH----hhcCcHhhhcccccHHH
Confidence            999999998887777665522100000                        00000000    01111000         


Q ss_pred             hHHhhhhhccccccCCCC------CCCCCCC------CCCcchhhhhhh-------------hhHHHhhhHHHHHHHHHH
Q 005817          265 DEKRWINENKGLFMPLDG------EVENTDG------SQPENMESQKSV-------------DLFREQGLRVLQTIYSGA  319 (676)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~~~~~-------------~~~~~~~~~~a~~iy~~A  319 (676)
                      .-..|+-.+.........      ...+|..      +.+ .+..+...             ..+...++..|..-|..+
T Consensus       172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a  250 (539)
T KOG0548|consen  172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPII-EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA  250 (539)
T ss_pred             HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCcc-chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            000000000000000000      0011100      111 11111000             011123567788888888


Q ss_pred             HhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHH
Q 005817          320 VEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQV  399 (676)
Q Consensus       320 l~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~  399 (676)
                      ++.. ++..+....--.+  |+.. .+.......++.++.--+...-...+++.....++.      ....++++.|+..
T Consensus       251 ~el~-~~it~~~n~aA~~--~e~~-~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a------~~k~~~~~~ai~~  320 (539)
T KOG0548|consen  251 LELA-TDITYLNNIAAVY--LERG-KYAECIELCEKAVEVGRELRADYKLIAKALARLGNA------YTKREDYEGAIKY  320 (539)
T ss_pred             HhHh-hhhHHHHHHHHHH--Hhcc-HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh------hhhHHhHHHHHHH
Confidence            8776 4444433322111  2221 122222222332222211111222333333221110      0114678899999


Q ss_pred             HHHHhhccCchhH---------------HHHHHHHHHHHhcC-ccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH
Q 005817          400 YEEALKNVPSSMI---------------FDLYTKFLMDMIAP-KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED  463 (676)
Q Consensus       400 ye~al~~~~~~~l---------------w~~y~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~  463 (676)
                      |+++|...-+..+               -..|+..+...-.+ ++++       ....+++..|...|.+|+..+|.++.
T Consensus       321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne-------~Fk~gdy~~Av~~YteAIkr~P~Da~  393 (539)
T KOG0548|consen  321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNE-------AFKKGDYPEAVKHYTEAIKRDPEDAR  393 (539)
T ss_pred             HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHH-------HHhccCHHHHHHHHHHHHhcCCchhH
Confidence            9999876543221               11222221100000 0000       11346789999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh
Q 005817          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (676)
Q Consensus       464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~  540 (676)
                      +|..-+-.+.+.+++..|++=.+.++ +..|+....|.+-+..+....          +.+.+.+.|++|+..-|..
T Consensus       394 lYsNRAac~~kL~~~~~aL~Da~~~i-eL~p~~~kgy~RKg~al~~mk----------~ydkAleay~eale~dp~~  459 (539)
T KOG0548|consen  394 LYSNRAACYLKLGEYPEALKDAKKCI-ELDPNFIKAYLRKGAALRAMK----------EYDKALEAYQEALELDPSN  459 (539)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhcCchh
Confidence            99999999999999999999999999 889999999988876665443          3677888899998866543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.93  E-value=4.2e-05  Score=59.46  Aligned_cols=64  Identities=20%  Similarity=0.178  Sum_probs=58.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (676)
                      .|+++.|...|++++..+|.+.++++.++..+.+.|++++|..++++++ ...|+++.+|..+++
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~-~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL-KQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH-GGGTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCHHHHHHHHhc
Confidence            4789999999999999999999999999999999999999999999999 899999888877654

...

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.89  E-value=1.8e-05  Score=77.34  Aligned_cols=82  Identities=17%  Similarity=0.303  Sum_probs=72.7

Q ss_pred             chHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHH
Q 005817          582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDY  661 (676)
Q Consensus       582 ~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y  661 (676)
                      .++..|+.+..+.|.+.+...||..|+...|.+..+|..++.+|...-     ++++.+|++|.+++.++|.+|.+|..|
T Consensus       108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~-----ani~s~Ra~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEI-----ANIESSRAMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhh-----ccHHHHHHHHHhhhccCCCCchHHHHH
Confidence            555588888888888999999999999999999999999998886642     289999999999999999999999999


Q ss_pred             HHHHhhc
Q 005817          662 YSTETKV  668 (676)
Q Consensus       662 ~~fE~~~  668 (676)
                      ..||..+
T Consensus       183 fr~El~y  189 (435)
T COG5191         183 FRMELMY  189 (435)
T ss_pred             HHHHHHH
Confidence            9999875

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=97.88  E-value=1.9e-05  Score=49.68  Aligned_cols=31  Identities=19%  Similarity=0.362  Sum_probs=27.6

Q ss_pred             chHHHHHHHHHHHhhCCCCchHHHHHHHHHhh
Q 005817          636 SLVNARKLFESALATYDQNTSLWRDYYSTETK  667 (676)
Q Consensus       636 ~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~  667 (676)
                      ++++||.+|++.+...| ++..|+.|+.||.+
T Consensus         2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFEe~   32 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHP-EVKNWIKYAKFEER   32 (32)
T ss_pred             hHHHHHHHHHHHHHhCC-CchHHHHHHHhhcC
Confidence            68999999999999875 58999999999964

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.82  E-value=0.016  Score=65.64  Aligned_cols=62  Identities=10%  Similarity=0.124  Sum_probs=47.7

Q ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817          174 GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME  236 (676)
Q Consensus       174 ~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e  236 (676)
                      ..+..+|-++++++|+....|-..+...-+.. ++..|+..|++|....|+....|...+...
T Consensus       475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adty  536 (1238)
T KOG1127|consen  475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTY  536 (1238)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Confidence            45677888888888888888888887765433 788888888888888888777777766543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.75  E-value=0.00038  Score=73.50  Aligned_cols=95  Identities=12%  Similarity=0.108  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|...|++|+...|++..+|...+..+...| +..+...+++++.+.|.++..|...+...+ ..|+++.|...|+++
T Consensus        18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~a   96 (356)
T PLN03088         18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKG   96 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence            568899999999999999999999999988887 578999999999999999999999998886 689999999999999


Q ss_pred             HHhCCCCHHHHHHHHHH
Q 005817          219 LRVCPTSEELWVEYLRM  235 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~  235 (676)
                      ++..|++..+.....+.
T Consensus        97 l~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         97 ASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHhCCCCHHHHHHHHHH
Confidence            99999987665554444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.71  E-value=0.0076  Score=69.56  Aligned_cols=67  Identities=12%  Similarity=0.035  Sum_probs=45.5

Q ss_pred             CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHH
Q 005817          323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE  402 (676)
Q Consensus       323 ~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~  402 (676)
                      .|.+......+..+|.+.   +..+.+..+++++++..|+++.+...+|..+-+             . ++++|...+.+
T Consensus       112 ~~~~k~Al~~LA~~Ydk~---g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-------------~-dL~KA~~m~~K  174 (906)
T PRK14720        112 YGENKLALRTLAEAYAKL---NENKKLKGVWERLVKADRDNPEIVKKLATSYEE-------------E-DKEKAITYLKK  174 (906)
T ss_pred             hhhhhHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------------h-hHHHHHHHHHH
Confidence            444433444444444443   345678888888888888888888888877644             2 68888888888


Q ss_pred             Hhhc
Q 005817          403 ALKN  406 (676)
Q Consensus       403 al~~  406 (676)
                      |+..
T Consensus       175 AV~~  178 (906)
T PRK14720        175 AIYR  178 (906)
T ss_pred             HHHH
Confidence            8875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.70  E-value=0.038  Score=60.82  Aligned_cols=71  Identities=11%  Similarity=-0.073  Sum_probs=63.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT  512 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~  512 (676)
                      .|.+++|....++||...|+.+++++.-+.++...|++++|...++.|- ...+.+--+-..-+....+.|.
T Consensus       207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar-~LD~~DRyiNsK~aKy~LRa~~  277 (517)
T PF12569_consen  207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR-ELDLADRYINSKCAKYLLRAGR  277 (517)
T ss_pred             hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hCChhhHHHHHHHHHHHHHCCC
Confidence            4778999999999999999999999999999999999999999999998 7777777777787888887764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.0039  Score=63.90  Aligned_cols=160  Identities=13%  Similarity=0.038  Sum_probs=110.4

Q ss_pred             cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh---HHHHHHHHHH
Q 005817          345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLM  421 (676)
Q Consensus       345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~  421 (676)
                      ....+.++--+.++..+.+......-+..+..             ....++|...|+++|..-|...   .-..-.+-++
T Consensus       184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-------------~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le  250 (486)
T KOG0550|consen  184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYY-------------NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLE  250 (486)
T ss_pred             cchhHHHHHHHHHhcccchhHHHHhccccccc-------------ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHH
Confidence            34556666667777788776654443333322             3568999999999999877532   1111222222


Q ss_pred             HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817          422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV  497 (676)
Q Consensus       422 ~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~  497 (676)
                      .+-.. +++       ....|++..|-+.|..||..+|.+    ..+|..-+....+.|+..+|+.-.++|+ ...|...
T Consensus       251 ~~k~~-gN~-------~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syi  321 (486)
T KOG0550|consen  251 VKKER-GND-------AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYI  321 (486)
T ss_pred             HHHhh-hhh-------HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHH
Confidence            22111 111       123588999999999999999985    4578888888889999999999999999 7777766


Q ss_pred             HHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          498 QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       498 ~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      .-...+++...-.+          +.+++.+-|++|++.
T Consensus       322 kall~ra~c~l~le----------~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  322 KALLRRANCHLALE----------KWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHH----------HHHHHHHHHHHHHhh
Confidence            66777776666554          367788888888875

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.65  E-value=0.00019  Score=55.73  Aligned_cols=61  Identities=15%  Similarity=0.172  Sum_probs=52.7

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR  234 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~  234 (676)
                      +..+...|++++..+|+++.+++.++...+ ..|+++.|+.++++++...|+++.+|...++
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            578899999999999999999999999987 6789999999999999999998777766554

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.65  E-value=0.0019  Score=67.77  Aligned_cols=103  Identities=10%  Similarity=0.009  Sum_probs=93.0

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~  216 (676)
                      ...+.++..+...+..+|+|.-+|..-.+...+.+ ...+.+.+.+++...|..+-+|+.|+...+ ..|+...|..+++
T Consensus       320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~  398 (484)
T COG4783         320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILN  398 (484)
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHH
Confidence            44677889999999999999999999999998887 578999999999999999999999999998 6889999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHH
Q 005817          217 NGLRVCPTSEELWVEYLRMELTYLN  241 (676)
Q Consensus       217 ral~~~p~~~~lW~~y~~~e~~~~~  241 (676)
                      +++...|+++..|..+++-....++
T Consensus       399 ~~~~~~p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         399 RYLFNDPEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             HHhhcCCCCchHHHHHHHHHHHhCc
Confidence            9999999999999999987665543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.60  E-value=0.00068  Score=71.62  Aligned_cols=97  Identities=10%  Similarity=0.036  Sum_probs=86.6

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      .++++.|+..|++|+..+|.++..|...+..+...|++++|+..+++++ ...|.+...|..++.++...|         
T Consensus        15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l~P~~~~a~~~lg~~~~~lg---------   84 (356)
T PLN03088         15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI-ELDPSLAKAYLRKGTACMKLE---------   84 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHhC---------
Confidence            4678999999999999999999999999999999999999999999999 899999999999988887776         


Q ss_pred             hchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005817          521 ADILSIFELLKCILTKVSALESESLWLM  548 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~  548 (676)
                       +.+++...|++|+...|.......|..
T Consensus        85 -~~~eA~~~~~~al~l~P~~~~~~~~l~  111 (356)
T PLN03088         85 -EYQTAKAALEKGASLAPGDSRFTKLIK  111 (356)
T ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence             479999999999998776655556654

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=97.60  E-value=0.0001  Score=47.87  Aligned_cols=32  Identities=31%  Similarity=0.658  Sum_probs=29.1

Q ss_pred             chHHHHHHHHHHHhhCCCCchHHHHHHHHHhh
Q 005817          636 SLVNARKLFESALATYDQNTSLWRDYYSTETK  667 (676)
Q Consensus       636 ~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~  667 (676)
                      +.+++|.+|++++..+|.++.+|+.|++||.+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~~   33 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEFEER   33 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHHHhC
Confidence            67899999999999999889999999999863

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.55  E-value=0.00023  Score=54.72  Aligned_cols=56  Identities=14%  Similarity=0.051  Sum_probs=51.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV  497 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~  497 (676)
                      .|+++.|+..|++++..+|.+++.|..++.++...|++++|+.++++++ +..|+++
T Consensus        10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~-~~~P~~p   65 (65)
T PF13432_consen   10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL-ELDPDNP   65 (65)
T ss_dssp             CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTT-H
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCCC
Confidence            4789999999999999999999999999999999999999999999999 8889864

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.55  E-value=0.00041  Score=53.99  Aligned_cols=66  Identities=12%  Similarity=0.190  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCC
Q 005817          157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQNGLRVCP  223 (676)
Q Consensus       157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~-~~~~Ar~~~~ral~~~p  223 (676)
                      +...|...+......+ +..+...|++++..+|+++.+|...+.... ..| +...|...|++++..+|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence            5678999999888877 689999999999999999999999999986 577 79999999999999988

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.53  E-value=0.0003  Score=54.08  Aligned_cols=61  Identities=15%  Similarity=0.217  Sum_probs=51.0

Q ss_pred             HHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH
Q 005817          165 MEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE  226 (676)
Q Consensus       165 ~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~  226 (676)
                      +......| ++.+..+|++++..+|.++..|..++.... ..|+++.|+..|++++...|+++
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence            34444555 578999999999999999999999999987 78899999999999999999874

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.48  E-value=0.0021  Score=52.24  Aligned_cols=87  Identities=21%  Similarity=0.168  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~  468 (676)
                      .+++++|...|+++++..|... .|.........                  .++++.|...|++++...|.++..|...
T Consensus        13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~   74 (100)
T cd00189          13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK------------------LGKYEEALEDYEKALELDPDNAKAYYNL   74 (100)
T ss_pred             HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence            4678999999999998877653 34333333322                  3668899999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817          469 VTLYLQLGKLDEARKLAAKLCSGKLSD  495 (676)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~  495 (676)
                      +.++...|+++.|...+.+++ ..+|+
T Consensus        75 ~~~~~~~~~~~~a~~~~~~~~-~~~~~  100 (100)
T cd00189          75 GLAYYKLGKYEEALEAYEKAL-ELDPN  100 (100)
T ss_pred             HHHHHHHHhHHHHHHHHHHHH-ccCCC
Confidence            999999999999999999998 76663

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.45  E-value=0.0012  Score=59.66  Aligned_cols=86  Identities=19%  Similarity=0.254  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....|..+|+-.+...|.+..-|+.+.-.+...| +..+...|.+|+.+.|++|......+.-.+ ..|+++.|+..|+.
T Consensus        50 ~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L-~lG~~~~A~~aF~~  128 (157)
T PRK15363         50 EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL-ACDNVCYAIKALKA  128 (157)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence            3577899999999999999999999999998877 689999999999999999999999998887 78999999999999


Q ss_pred             HHHhCCCC
Q 005817          218 GLRVCPTS  225 (676)
Q Consensus       218 al~~~p~~  225 (676)
                      ++.++...
T Consensus       129 Ai~~~~~~  136 (157)
T PRK15363        129 VVRICGEV  136 (157)
T ss_pred             HHHHhccC
Confidence            99999543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.45  E-value=0.0034  Score=65.89  Aligned_cols=120  Identities=13%  Similarity=0.065  Sum_probs=98.5

Q ss_pred             CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChh
Q 005817          361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSH  439 (676)
Q Consensus       361 p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~  439 (676)
                      |.....|+-.|..++.             .+.++.|+..+..-++..|++. +|..-.+...+                 
T Consensus       303 ~~~~aa~YG~A~~~~~-------------~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-----------------  352 (484)
T COG4783         303 RGGLAAQYGRALQTYL-------------AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-----------------  352 (484)
T ss_pred             ccchHHHHHHHHHHHH-------------hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------
Confidence            5556666666655544             3678899999999998888765 44443333333                 


Q ss_pred             hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817          440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT  512 (676)
Q Consensus       440 ~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~  512 (676)
                       .+....|.+.+++++..+|..+-+|+.|++.+++.|++++|..++.+.+ ...|.++..|...++.+...|+
T Consensus       353 -~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~-~~~p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         353 -ANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYL-FNDPEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             -cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHh-hcCCCCchHHHHHHHHHHHhCc
Confidence             3668999999999999999999999999999999999999999999999 8999999999999998887764

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=97.44  E-value=0.0014  Score=57.05  Aligned_cols=109  Identities=17%  Similarity=0.283  Sum_probs=76.9

Q ss_pred             HhhHHhHHHhhC---CCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHH
Q 005817           76 KQRRKFEYRLKR---PSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVM  152 (676)
Q Consensus        76 ~~R~~fE~~l~~---~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~  152 (676)
                      ..|..||..|.+   ...-+..|++||.|=....                        +..    +.......+++||++
T Consensus         3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~------------------------p~g----~~~s~L~~lLerc~~   54 (125)
T smart00777        3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENY------------------------PQG----GKESGLLTLLERCIR   54 (125)
T ss_pred             HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhC------------------------CCC----CchhhHHHHHHHHHH
Confidence            568999999953   2234688999999843210                        000    112456788889988


Q ss_pred             hCCC---------CHHHHHHHHHHHHHccCchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          153 RFKG---------DIELWFKYMEFCRQRKNGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       153 ~~p~---------~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~--P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      .|-+         -+++|+.|++++.     ..+.+|.-+....  -....+|..+|.+. +..|++..|..+|++|
T Consensus        55 ~f~~~~~YknD~RyLkiWi~ya~~~~-----dp~~if~~L~~~~IG~~~AlfYe~~A~~l-E~~g~~~~A~~iy~~G  125 (125)
T smart00777       55 YFEDDERYKNDPRYLKIWLKYADNCD-----EPRELFQFLYSKGIGTKLALFYEEWAQLL-EAAGRYKKADEVYQLG  125 (125)
T ss_pred             HhhhhhhhcCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHHcc
Confidence            8643         3589999999862     3466777665532  33678999999987 6899999999999875

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.44  E-value=0.0053  Score=55.81  Aligned_cols=117  Identities=17%  Similarity=0.169  Sum_probs=83.6

Q ss_pred             cHHHHHHHHHHHHhcCCCC---hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 005817          345 SDDMHDKILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLM  421 (676)
Q Consensus       345 ~~~~a~~il~~~~~~~p~~---~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~  421 (676)
                      ....+...++.++..+|++   ....+.+|...+.             .+++++|...|+.++...|...+ ...+.+..
T Consensus        26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-------------~g~~~~A~~~l~~~~~~~~d~~l-~~~a~l~L   91 (145)
T PF09976_consen   26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-------------QGDYDEAKAALEKALANAPDPEL-KPLARLRL   91 (145)
T ss_pred             CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhhCCCHHH-HHHHHHHH
Confidence            3455677888899999998   3446777887765             47899999999999998765431 11112111


Q ss_pred             HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       422 ~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      ..+.             ..++.++.|...++. +...+..+..+...++++...|++++|+..|++|+
T Consensus        92 A~~~-------------~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARIL-------------LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHH-------------HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            1110             014678999999866 33345567788889999999999999999999985

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=97.42  E-value=0.00028  Score=45.71  Aligned_cols=32  Identities=31%  Similarity=0.585  Sum_probs=27.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          206 LNVTAARALMQNGLRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       206 ~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~  237 (676)
                      |+++.||.+|+++++.+|.+..+|..|++|+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~   32 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFEE   32 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence            46788899999999988888899999988874

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.42  E-value=0.00035  Score=48.96  Aligned_cols=43  Identities=21%  Similarity=0.327  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817          191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR  234 (676)
Q Consensus       191 ~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~  234 (676)
                      |.+|..++..+. ..|+++.|+.+|+++++.+|+++.+|..+++
T Consensus         1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            468899999886 6889999999999999999999999988765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.0037  Score=62.05  Aligned_cols=129  Identities=16%  Similarity=0.083  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhc
Q 005817          347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIA  425 (676)
Q Consensus       347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~  425 (676)
                      +..-.-++.-+..+|++.+-|..+++.++.             .++...|...|.+|++..|.+. ++..|.....-.- 
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~-------------~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a-  204 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMA-------------LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA-  204 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------------hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-
Confidence            344445666788899999999999999986             5789999999999999988654 8888877665421 


Q ss_pred             CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817          426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (676)
Q Consensus       426 ~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (676)
                        +            +....++..++++++..+|.+...-..++.-+...|++.+|...++..+ ...|.+ .-|...|+
T Consensus       205 --~------------~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL-~~lp~~-~~rr~~ie  268 (287)
T COG4235         205 --G------------QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLL-DLLPAD-DPRRSLIE  268 (287)
T ss_pred             --C------------CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCC-CchHHHHH
Confidence              1            2345789999999999999998887788888889999999999999999 656653 12444443

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=97.37  E-value=0.00029  Score=44.40  Aligned_cols=30  Identities=23%  Similarity=0.486  Sum_probs=24.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          207 NVTAARALMQNGLRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       207 ~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~  237 (676)
                      .++.||.+|+|.+..+|+ ...|+.|++||.
T Consensus         2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe   31 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE   31 (32)
T ss_pred             hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence            467888888888888886 688888888874

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.36  E-value=0.0014  Score=53.37  Aligned_cols=84  Identities=10%  Similarity=0.092  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...+...+++++...|.+...|..++......+ ...+...|++++...|.++..|...+.... ..|+.+.|...+.++
T Consensus        16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~   94 (100)
T cd00189          16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY-KLGKYEEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence            466788999999999998888888888887766 578899999999999999889988888876 577899999999999


Q ss_pred             HHhCCC
Q 005817          219 LRVCPT  224 (676)
Q Consensus       219 l~~~p~  224 (676)
                      ++.+|.
T Consensus        95 ~~~~~~  100 (100)
T cd00189          95 LELDPN  100 (100)
T ss_pred             HccCCC
Confidence            988873

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.35  E-value=0.0021  Score=63.48  Aligned_cols=94  Identities=9%  Similarity=-0.005  Sum_probs=83.4

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~  216 (676)
                      .....|...|.+|+...|.|.-++-.-+....+.| +..|.+-.+.||.++|+..+.|.......+ ..|++..|...|+
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~ayk  173 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYK  173 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHH
Confidence            34678999999999999999999998888888888 688999999999999999999999998886 6889999999999


Q ss_pred             HHHHhCCCCHHHHHHH
Q 005817          217 NGLRVCPTSEELWVEY  232 (676)
Q Consensus       217 ral~~~p~~~~lW~~y  232 (676)
                      +||.+.|+++..|..+
T Consensus       174 KaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  174 KALELDPDNESYKSNL  189 (304)
T ss_pred             hhhccCCCcHHHHHHH
Confidence            9999999987544443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.31  Score=52.08  Aligned_cols=315  Identities=15%  Similarity=0.048  Sum_probs=173.3

Q ss_pred             HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCC
Q 005817          305 REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGT  384 (676)
Q Consensus       305 ~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~  384 (676)
                      ..++++.|...|-.||...|.+.-++..=-..+...   +.++.+.+--.+.++.+|+=+..|...+-..+.        
T Consensus        14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~---~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~--------   82 (539)
T KOG0548|consen   14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL---GSYEKALKDATKTRRLNPDWAKGYSRKGAALFG--------   82 (539)
T ss_pred             ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHH---hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh--------
Confidence            346888999999999998887743333222222221   234445555566778888888888877766543        


Q ss_pred             CcCcchhHHHHHHHHHHHHhhccCchh-----HHHHHHH----------------------------------HHHHHhc
Q 005817          385 SEDIVPSQMQKAIQVYEEALKNVPSSM-----IFDLYTK----------------------------------FLMDMIA  425 (676)
Q Consensus       385 ~~~~~~~~~~~A~~~ye~al~~~~~~~-----lw~~y~~----------------------------------~~~~~~~  425 (676)
                           .++++.|+..|.+||+..|+++     +-..+..                                  .++.+-.
T Consensus        83 -----lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~  157 (539)
T KOG0548|consen   83 -----LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK  157 (539)
T ss_pred             -----cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence                 5788999999999998887755     1122210                                  0000000


Q ss_pred             C------ccccccC-----------------C--------------CC-----Ch----------------------hhh
Q 005817          426 P------KKEETRD-----------------S--------------EL-----PS----------------------HVE  441 (676)
Q Consensus       426 ~------~~~d~~~-----------------~--------------~~-----~~----------------------~~~  441 (676)
                      .      ...|+.+                 .              .+     .+                      ...
T Consensus       158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk  237 (539)
T KOG0548|consen  158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK  237 (539)
T ss_pred             CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence            0      0000000                 0              00     00                      011


Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH---HHHHhccccCCCC
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS---VEIRCVTRNSFSP  518 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~---l~~~~~~~~~~~p  518 (676)
                      .+...+..-|..++..+ .+-.....-+..+...|.+...+...+.++ +..   .+.|..+-.   ...+.|....   
T Consensus       238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~-E~g---re~rad~klIak~~~r~g~a~~---  309 (539)
T KOG0548|consen  238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAV-EVG---RELRADYKLIAKALARLGNAYT---  309 (539)
T ss_pred             hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHH-HHh---HHHHHHHHHHHHHHHHhhhhhh---
Confidence            24567777888888877 666667777777788888888887777777 322   233333221   1112121000   


Q ss_pred             ChhchHHHHHHHHHHHhhcCh-h---------hhHHHHHH--HHH-------------HHHhhh-HHHHHHHHHHHHhhh
Q 005817          519 SKADILSIFELLKCILTKVSA-L---------ESESLWLM--ALK-------------FFMNQK-HYFDKLVEIALISVA  572 (676)
Q Consensus       519 ~~~~~~~~~~~f~~Al~~~~~-~---------~~~~lW~~--~l~-------------~~~~~~-~~~~~~~~~a~~~~~  572 (676)
                      .-++.+.+.+.|++++...-. +         +..+.+..  |++             +|.... ..+-+-|++|+. ..
T Consensus       310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk-r~  388 (539)
T KOG0548|consen  310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK-RD  388 (539)
T ss_pred             hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-cC
Confidence            012456677777777753111 1         01111111  110             000000 112233555553 23


Q ss_pred             hCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          573 KDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       573 ~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      |++     ...+..-+....++|.+..|.+--++++++.|+...-|..=......+.      +++.+-+.|+.+++..|
T Consensus       389 P~D-----a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk------~ydkAleay~eale~dp  457 (539)
T KOG0548|consen  389 PED-----ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK------EYDKALEAYQEALELDP  457 (539)
T ss_pred             Cch-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCc
Confidence            433     2333334555677888888888888888888877775544444444444      78899999999999988


Q ss_pred             CCc
Q 005817          653 QNT  655 (676)
Q Consensus       653 ~~~  655 (676)
                      ++.
T Consensus       458 ~~~  460 (539)
T KOG0548|consen  458 SNA  460 (539)
T ss_pred             hhH
Confidence            654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.32  E-value=0.00037  Score=48.84  Aligned_cols=43  Identities=21%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (676)
Q Consensus       462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (676)
                      |+.|..++..+.+.|++++|.+++++++ +.+|+++..|..+++
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l-~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRAL-ALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCCHHHHHHhhh
Confidence            4689999999999999999999999999 899999999998764

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.28  E-value=0.0035  Score=68.62  Aligned_cols=56  Identities=18%  Similarity=0.233  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (676)
                      |.+..|..+|++        ..+|..-+.++...|...+|..+..+-+ + .|+.+.+|..+.++.
T Consensus       412 GitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~l-e-k~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  412 GITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQEL-E-KDPDPRLYCLLGDVL  467 (777)
T ss_pred             chHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHh-c-CCCcchhHHHhhhhc
Confidence            678889999987        5688899999999999999998988888 5 566677777776554

>PRK11906 transcriptional regulator; Provisional

Probab=97.26  E-value=0.054  Score=57.37  Aligned_cols=136  Identities=10%  Similarity=0.033  Sum_probs=101.4

Q ss_pred             hhHHHHHHHHHHHHh---hccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH
Q 005817          390 PSQMQKAIQVYEEAL---KNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED  463 (676)
Q Consensus       390 ~~~~~~A~~~ye~al---~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~  463 (676)
                      +.....|...|.+|+   ...|...   -|.++..+.........           .......|++.-++|++.+|.++-
T Consensus       271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-----------~~~~~~~a~~~A~rAveld~~Da~  339 (458)
T PRK11906        271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-----------LELAAQKALELLDYVSDITTVDGK  339 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-----------chHHHHHHHHHHHHHHhcCCCCHH
Confidence            356788999999999   4444322   34444444442221111           135678899999999999999988


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhh-
Q 005817          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALES-  542 (676)
Q Consensus       464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~-  542 (676)
                      .-...+....-.++++.|..++++|+ ..+|++...|..+..+..-.|          +.+++.+.+++|++..|..-. 
T Consensus       340 a~~~~g~~~~~~~~~~~a~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G----------~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        340 ILAIMGLITGLSGQAKVSHILFEQAK-IHSTDIASLYYYRALVHFHNE----------KIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHh-hcCCccHHHHHHHHHHHHHcC----------CHHHHHHHHHHHhccCchhhHH
Confidence            77777777777778999999999999 999999999999887777666          478999999999998776533 


Q ss_pred             --HHHHH
Q 005817          543 --ESLWL  547 (676)
Q Consensus       543 --~~lW~  547 (676)
                        .++|.
T Consensus       409 ~~~~~~~  415 (458)
T PRK11906        409 VVIKECV  415 (458)
T ss_pred             HHHHHHH
Confidence              34555

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.25  E-value=0.0012  Score=51.89  Aligned_cols=56  Identities=18%  Similarity=0.316  Sum_probs=50.7

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW  229 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW  229 (676)
                      +..+.+++++++..+|.++.+|..++.... ..|+++.|...|++++...|+++.+-
T Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen   11 YEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            578999999999999999999999999987 68899999999999999999876543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.23  E-value=0.0023  Score=63.23  Aligned_cols=90  Identities=12%  Similarity=-0.025  Sum_probs=80.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      .+++..|...|.+||..+|.++-+|+.=+.-+.+.|.++.|.+=++.|+ ...|++.+.|.+........|.        
T Consensus        94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~iDp~yskay~RLG~A~~~~gk--------  164 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-SIDPHYSKAYGRLGLAYLALGK--------  164 (304)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-hcChHHHHHHHHHHHHHHccCc--------
Confidence            3679999999999999999999999999999999999999999999999 9999999999998877776663        


Q ss_pred             hchHHHHHHHHHHHhhcChhh
Q 005817          521 ADILSIFELLKCILTKVSALE  541 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~~~~~  541 (676)
                        .+++.+-|++||..-|.++
T Consensus       165 --~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  165 --YEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             --HHHHHHHHHhhhccCCCcH
Confidence              6888888999999777654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.22  E-value=0.05  Score=52.90  Aligned_cols=160  Identities=17%  Similarity=0.096  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005817          143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV  221 (676)
Q Consensus       143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~  221 (676)
                      +..-+-+...+.|+|..+ ..+..-+...| .+....+..+++..+|.+..+-..+++..+ .+||+..|...|.++.+.
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l  129 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARL  129 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhcc
Confidence            344555777799999999 88887776666 356677888888899999888877888887 689999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhh
Q 005817          222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSV  301 (676)
Q Consensus       222 ~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (676)
                      .|++.++|....-.....                                                              
T Consensus       130 ~p~d~~~~~~lgaaldq~--------------------------------------------------------------  147 (257)
T COG5010         130 APTDWEAWNLLGAALDQL--------------------------------------------------------------  147 (257)
T ss_pred             CCCChhhhhHHHHHHHHc--------------------------------------------------------------
Confidence            999999888766543332                                                              


Q ss_pred             hhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 005817          302 DLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK  374 (676)
Q Consensus       302 ~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~  374 (676)
                           ++.+.|+.-|.+|++..|.+......+.-.+   -+.+..+.++.++......-+.+..+-..++...
T Consensus       148 -----Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~---~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~  212 (257)
T COG5010         148 -----GRFDEARRAYRQALELAPNEPSIANNLGMSL---LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV  212 (257)
T ss_pred             -----cChhHHHHHHHHHHHhccCCchhhhhHHHHH---HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence                 2445677777777777776655544432222   1224566777777777776666666666666554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.16  E-value=0.024  Score=62.38  Aligned_cols=113  Identities=13%  Similarity=0.123  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI  424 (676)
Q Consensus       346 ~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~  424 (676)
                      ++.+...++..++.+|-....|+.++-..+.             .++.+.|.+.|..++..-|+.. -|+........  
T Consensus       501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALq-------------lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~--  565 (777)
T KOG1128|consen  501 FSEADKHLERSLEINPLQLGTWFGLGCAALQ-------------LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR--  565 (777)
T ss_pred             HHHHHHHHHHHhhcCccchhHHHhccHHHHH-------------HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH--
Confidence            4556666777777777777777777666654             4667777777777777766543 56554443333  


Q ss_pred             cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                                      .+...+|...+.+|++.+-.+..+|.+|..+..+.|.+++|.+.|.+.+
T Consensus       566 ----------------~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll  614 (777)
T KOG1128|consen  566 ----------------LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL  614 (777)
T ss_pred             ----------------HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence                            2345677777888887776677788888888888888888887777776

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.15  E-value=0.0061  Score=64.44  Aligned_cols=102  Identities=13%  Similarity=0.136  Sum_probs=84.8

Q ss_pred             hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~  469 (676)
                      .++++.|+.+|++..+..|....  ..++....                  .+.-.+|..++.+++..+|.+.++....+
T Consensus       182 t~~~~~ai~lle~L~~~~pev~~--~LA~v~l~------------------~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa  241 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPEVAV--LLARVYLL------------------MNEEVEAIRLLNEALKENPQDSELLNLQA  241 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCcHHH--HHHHHHHh------------------cCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35689999999999888776432  22232222                  12246889999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817          470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT  512 (676)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~  512 (676)
                      +++++.++++.|+.+.++|+ ...|.+...|...+..++..|+
T Consensus       242 ~fLl~k~~~~lAL~iAk~av-~lsP~~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  242 EFLLSKKKYELALEIAKKAV-ELSPSEFETWYQLAECYIQLGD  283 (395)
T ss_pred             HHHHhcCCHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhcCC
Confidence            99999999999999999999 8999999999999999998875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.14  E-value=0.41  Score=49.41  Aligned_cols=130  Identities=14%  Similarity=-0.045  Sum_probs=96.8

Q ss_pred             CChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhh
Q 005817          362 VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVE  441 (676)
Q Consensus       362 ~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~  441 (676)
                      .+|.+-..+|...+.             ++..+.|..+.+++++..-+..+...| .    ...               .
T Consensus       261 ~~p~l~~~~a~~li~-------------l~~~~~A~~~i~~~Lk~~~D~~L~~~~-~----~l~---------------~  307 (400)
T COG3071         261 NDPELVVAYAERLIR-------------LGDHDEAQEIIEDALKRQWDPRLCRLI-P----RLR---------------P  307 (400)
T ss_pred             cChhHHHHHHHHHHH-------------cCChHHHHHHHHHHHHhccChhHHHHH-h----hcC---------------C
Confidence            345555666666654             678899999999999876554432221 1    111               2


Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChh
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~  521 (676)
                      ++.+......++.+..+|.+|.++...+.++.+++.+.+|...++.|+ + .-.+..-|...++...+.|+         
T Consensus       308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl-~-~~~s~~~~~~la~~~~~~g~---------  376 (400)
T COG3071         308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL-K-LRPSASDYAELADALDQLGE---------  376 (400)
T ss_pred             CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH-h-cCCChhhHHHHHHHHHHcCC---------
Confidence            456778888899999999999999999999999999999999999999 4 34455666666777777664         


Q ss_pred             chHHHHHHHHHHHhh
Q 005817          522 DILSIFELLKCILTK  536 (676)
Q Consensus       522 ~~~~~~~~f~~Al~~  536 (676)
                       ...+.+++++++..
T Consensus       377 -~~~A~~~r~e~L~~  390 (400)
T COG3071         377 -PEEAEQVRREALLL  390 (400)
T ss_pred             -hHHHHHHHHHHHHH
Confidence             68888888888853

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.14  E-value=0.0067  Score=52.52  Aligned_cols=90  Identities=13%  Similarity=0.110  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc---H
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT---E  462 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~---~  462 (676)
                      .+++++|...|++++...|...    .+.........                  .++++.|...|+.++..+|.+   +
T Consensus        15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~p~~~~~~   76 (119)
T TIGR02795        15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA------------------QGKYADAAKAFLAVVKKYPKSPKAP   76 (119)
T ss_pred             cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh------------------hccHHHHHHHHHHHHHHCCCCCccc
Confidence            4789999999999998777532    22112222211                  367899999999999987774   6


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ  498 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~  498 (676)
                      ..+...+..+...|++++|...+++++ ..+|++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~  111 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAKATLQQVI-KRYPGSSA  111 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHH-HHCcCChh
Confidence            789999999999999999999999999 88898753

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.13  E-value=0.0028  Score=49.17  Aligned_cols=68  Identities=13%  Similarity=0.043  Sum_probs=54.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       461 ~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      ++..|...+..+...|++++|+..|.+++ ...|+++.+|..+.......++         +.+++.+.|++|++.-|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai-~~~p~~~~~~~~~g~~~~~~~~---------~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI-ELDPNNAEAYYNLGLAYMKLGK---------DYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHH-HHSTTHHHHHHHHHHHHHHTTT---------HHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhCc---------cHHHHHHHHHHHHHcCc
Confidence            46788888888888899999999999998 7888888888888887777652         36778888888876543

...

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.13  E-value=0.0078  Score=63.64  Aligned_cols=109  Identities=22%  Similarity=0.248  Sum_probs=91.0

Q ss_pred             CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHH
Q 005817          344 QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMD  422 (676)
Q Consensus       344 ~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~  422 (676)
                      +..+.+..+++++.+.+|+   .+..+|+.++.             .++-.+|..+.+++++..|... +....++|...
T Consensus       183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~-------------~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  183 QRYDEAIELLEKLRERDPE---VAVLLARVYLL-------------MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS  246 (395)
T ss_pred             ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh-------------cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            4577899999999998865   66678888765             2445789999999999888544 77778888876


Q ss_pred             HhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005817          423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAA  486 (676)
Q Consensus       423 ~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~  486 (676)
                                        .+..+.|..+.++|+...|.+.+.|...+..+...|+++.|+..+.
T Consensus       247 ------------------k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  247 ------------------KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             ------------------cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence                              3567999999999999999999999999999999999999986544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.10  E-value=0.0044  Score=56.00  Aligned_cols=86  Identities=10%  Similarity=0.012  Sum_probs=79.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      .|+++.|..+|+-....+|.+.+.|..++-.+...|++++|+..|.+|. ...|+++.............|         
T Consensus        48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~~ddp~~~~~ag~c~L~lG---------  117 (157)
T PRK15363         48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIKIDAPQAPWAAAECYLACD---------  117 (157)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHHcC---------
Confidence            4789999999999999999999999999999999999999999999999 889999999988888887776         


Q ss_pred             hchHHHHHHHHHHHhhc
Q 005817          521 ADILSIFELLKCILTKV  537 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~  537 (676)
                       +++.+++-|+.|+..+
T Consensus       118 -~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        118 -NVCYAIKALKAVVRIC  133 (157)
T ss_pred             -CHHHHHHHHHHHHHHh
Confidence             4899999999999876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.06  E-value=0.0023  Score=50.36  Aligned_cols=62  Identities=19%  Similarity=0.161  Sum_probs=55.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR  503 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~  503 (676)
                      .++++.|..++++++..+|.++..|..++.++...|++++|...+++++ +..|++...-...
T Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l-~~~p~~~~~~~~~   69 (73)
T PF13371_consen    8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL-ELSPDDPDARALR   69 (73)
T ss_pred             CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH-HHCCCcHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999 8899876554433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.06  E-value=0.11  Score=50.51  Aligned_cols=52  Identities=12%  Similarity=0.004  Sum_probs=25.4

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817          459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (676)
Q Consensus       459 p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (676)
                      |.+..+...++....++|++..|...+.++. ...|++.+.|....-.+.+.|
T Consensus        97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~l~p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-RLAPTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHh-ccCCCChhhhhHHHHHHHHcc
Confidence            4444444445555555555555555555555 445555555555444444443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.97  E-value=0.011  Score=51.10  Aligned_cols=87  Identities=14%  Similarity=0.134  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHH
Q 005817          140 VARILEIYRLAVMRFKGD---IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR  212 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~---~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar  212 (676)
                      ...+...|++++..+|++   ...+..++....+.+ +..+...|++++..+|++   +.+|...+.... ..|+.+.|.
T Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~A~   96 (119)
T TIGR02795        18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ-ELGDKEKAK   96 (119)
T ss_pred             HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH-HhCChHHHH
Confidence            567889999999999987   467777777777766 578999999999999885   678888888875 688999999


Q ss_pred             HHHHHHHHhCCCCHH
Q 005817          213 ALMQNGLRVCPTSEE  227 (676)
Q Consensus       213 ~~~~ral~~~p~~~~  227 (676)
                      ..+++++...|++..
T Consensus        97 ~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        97 ATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHHHHCcCChh
Confidence            999999999998754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.97  E-value=0.0029  Score=51.46  Aligned_cols=81  Identities=16%  Similarity=0.126  Sum_probs=65.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCC
Q 005817          441 EHYISHLLTVYEKAEAMGCL--TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP  518 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~--~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p  518 (676)
                      +++++.|...|++++...|.  +...|+..+..+.+.|++++|..++++ . +..|.+.......+......+.      
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~~~~~~~~~l~a~~~~~l~~------   73 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-KLDPSNPDIHYLLARCLLKLGK------   73 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-THHHCHHHHHHHHHHHHHHTT-------
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-CCCCCCHHHHHHHHHHHHHhCC------
Confidence            46789999999999999885  466788899999999999999999999 6 6677777777777887777764      


Q ss_pred             ChhchHHHHHHHHHH
Q 005817          519 SKADILSIFELLKCI  533 (676)
Q Consensus       519 ~~~~~~~~~~~f~~A  533 (676)
                          .+++.++|++|
T Consensus        74 ----y~eAi~~l~~~   84 (84)
T PF12895_consen   74 ----YEEAIKALEKA   84 (84)
T ss_dssp             ----HHHHHHHHHHH
T ss_pred             ----HHHHHHHHhcC
Confidence                67787777764

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.85  E-value=0.077  Score=58.74  Aligned_cols=153  Identities=15%  Similarity=0.014  Sum_probs=107.0

Q ss_pred             HHHhcCCCChhhHHHHHH--HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHH--HHHHHHHHHhcCccc
Q 005817          355 DMQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFD--LYTKFLMDMIAPKKE  429 (676)
Q Consensus       355 ~~~~~~p~~~~~w~~la~--~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~--~y~~~~~~~~~~~~~  429 (676)
                      .+...-|.++.+|..+.+  .++...+          .+...+|+..|++|++..|+.. .|.  .++......+.  ..
T Consensus       328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~----------~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~--~~  395 (517)
T PRK10153        328 RLQQGLPHQGAALTLFYQAHHYLNSGD----------AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ--PL  395 (517)
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC--Cc
Confidence            344566788888765543  3332211          3568899999999999999754 111  11121221111  10


Q ss_pred             cccCCCCChhhhhhHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817          430 ETRDSELPSHVEHYISHLLTVYEKAEAM--GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (676)
Q Consensus       430 d~~~~~~~~~~~~~~~~a~~iye~al~~--~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (676)
                                .+..+..+....++++..  +|.++.++...+-.....|++++|...+++|+ ...| +...|..+..+.
T Consensus       396 ----------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~L~p-s~~a~~~lG~~~  463 (517)
T PRK10153        396 ----------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI-DLEM-SWLNYVLLGKVY  463 (517)
T ss_pred             ----------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCC-CHHHHHHHHHHH
Confidence                      124467777778887774  67778888888888888999999999999999 8888 567788888888


Q ss_pred             HHhccccCCCCChhchHHHHHHHHHHHhhcChhh
Q 005817          508 IRCVTRNSFSPSKADILSIFELLKCILTKVSALE  541 (676)
Q Consensus       508 ~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~  541 (676)
                      ...|+          .+++.+.|++|+..-|...
T Consensus       464 ~~~G~----------~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        464 ELKGD----------NRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHcCC----------HHHHHHHHHHHHhcCCCCc
Confidence            77774          7999999999998766543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.05  Score=54.20  Aligned_cols=94  Identities=11%  Similarity=-0.026  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCc
Q 005817          309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI  388 (676)
Q Consensus       309 ~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~  388 (676)
                      +..|..-|.+|+...|++.+.+..+-+++..-..+.....++.++++++..+|++...-.++|..+++            
T Consensus       172 ~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe------------  239 (287)
T COG4235         172 ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE------------  239 (287)
T ss_pred             hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH------------
Confidence            34456666666666666666666555544322222234566777777777777777766677766665            


Q ss_pred             chhHHHHHHHHHHHHhhccCchhHHHH
Q 005817          389 VPSQMQKAIQVYEEALKNVPSSMIFDL  415 (676)
Q Consensus       389 ~~~~~~~A~~~ye~al~~~~~~~lw~~  415 (676)
                       .+++.+|...++.-++..|.+.=|..
T Consensus       240 -~g~~~~A~~~Wq~lL~~lp~~~~rr~  265 (287)
T COG4235         240 -QGDYAEAAAAWQMLLDLLPADDPRRS  265 (287)
T ss_pred             -cccHHHHHHHHHHHHhcCCCCCchHH
Confidence             46788888888888888776554443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.81  E-value=0.044  Score=51.15  Aligned_cols=88  Identities=8%  Similarity=-0.045  Sum_probs=67.3

Q ss_pred             HHHHhCCCC--HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Q 005817          149 LAVMRFKGD--IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVC  222 (676)
Q Consensus       149 ral~~~p~~--~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~  222 (676)
                      ..++..+.+  ...|...+......+ ++.+...|.+++...|+.   +..|...+.... ..|+.+.|...+++++...
T Consensus        24 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~  102 (168)
T CHL00033         24 RILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERN  102 (168)
T ss_pred             HhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Confidence            333444444  567777777776666 578999999999998764   347888888775 7889999999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 005817          223 PTSEELWVEYLRMEL  237 (676)
Q Consensus       223 p~~~~lW~~y~~~e~  237 (676)
                      |.....|...+.+..
T Consensus       103 ~~~~~~~~~la~i~~  117 (168)
T CHL00033        103 PFLPQALNNMAVICH  117 (168)
T ss_pred             cCcHHHHHHHHHHHH
Confidence            998877766665544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.55  E-value=0.01  Score=48.16  Aligned_cols=80  Identities=21%  Similarity=0.250  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHHHHhhccCch--h-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSS--M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~--~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~  466 (676)
                      .++++.|+..|++.++..|++  . .|...+....+                  .|++++|..++++ ...++.++....
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~------------------~~~y~~A~~~~~~-~~~~~~~~~~~~   62 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ------------------QGKYEEAIELLQK-LKLDPSNPDIHY   62 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH------------------TTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH------------------CCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence            367899999999999998853  2 33322222222                  4779999999999 666777778888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 005817          467 RYVTLYLQLGKLDEARKLAAKL  488 (676)
Q Consensus       467 ~~~~l~~~~~~~~~A~~l~~~a  488 (676)
                      .++..+.+.|++++|+++++++
T Consensus        63 l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   63 LLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHhcC
Confidence            8899999999999999999875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.40  E-value=0.096  Score=47.48  Aligned_cols=118  Identities=19%  Similarity=0.036  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc---HHHHHH
Q 005817          391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT---EDIAHR  467 (676)
Q Consensus       391 ~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~---~~lw~~  467 (676)
                      ++...+...++.-++..|... +...+.+......             ...|++++|...|+.++...|..   +...+.
T Consensus        25 ~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~-------------~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   25 GDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAA-------------YEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             CCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHH-------------HHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            345666667777777666542 1122222221110             01477999999999999986543   456888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHH
Q 005817          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (676)
Q Consensus       468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al  534 (676)
                      .+.++...|++++|+.+++..  ...+..+..+....++....|          +.++++..|++||
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~--~~~~~~~~~~~~~Gdi~~~~g----------~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI--PDEAFKALAAELLGDIYLAQG----------DYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc--cCcchHHHHHHHHHHHHHHCC----------CHHHHHHHHHHhC
Confidence            899999999999999999763  345556778888888888876          4799999999885

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=96.37  E-value=0.086  Score=46.44  Aligned_cols=115  Identities=12%  Similarity=0.167  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHH-hc
Q 005817          524 LSIFELLKCILTKVS-ALESESLWLMALKFFMNQK------HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ-KD  595 (676)
Q Consensus       524 ~~~~~~f~~Al~~~~-~~~~~~lW~~~l~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~-~g  595 (676)
                      ++.++.|+..|.... .++.+..|..|+...+...      ..+..++++++..+..+..-  ..+.  -|+..-.. ..
T Consensus         2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y--~nD~--RylkiWi~ya~   77 (126)
T PF08311_consen    2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERY--KNDE--RYLKIWIKYAD   77 (126)
T ss_dssp             HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGG--TT-H--HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhh--cCCH--HHHHHHHHHHH
Confidence            445667899998776 6677889999998876542      45677888888766433211  1111  24432111 22


Q ss_pred             CHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHH
Q 005817          596 GIQQAREMYKRFLA--LPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESAL  648 (676)
Q Consensus       596 ~~~~Ar~iy~~al~--~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al  648 (676)
                      -.+.++.+|+-+..  +......+|..++.+....+      +.++|.++|..++
T Consensus        78 ~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~------~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   78 LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG------NFKKADEIYQLGI  126 (126)
T ss_dssp             TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-------HHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC------CHHHHHHHHHhhC
Confidence            23488999988754  45566789999999888888      8999999999885

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.31  E-value=0.046  Score=54.85  Aligned_cols=86  Identities=10%  Similarity=0.134  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR  212 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar  212 (676)
                      ...+...|+..+..+|++.   ..+...++.....| +..+...|.+++..+|.+   ++.|...+.... ..|+.+.|+
T Consensus       159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~-~~g~~~~A~  237 (263)
T PRK10803        159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ-DKGDTAKAK  237 (263)
T ss_pred             HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH-HcCCHHHHH
Confidence            4677888999999999883   45555555555555 578899999999998874   678887777764 578999999


Q ss_pred             HHHHHHHHhCCCCH
Q 005817          213 ALMQNGLRVCPTSE  226 (676)
Q Consensus       213 ~~~~ral~~~p~~~  226 (676)
                      .+|++.++..|++.
T Consensus       238 ~~~~~vi~~yP~s~  251 (263)
T PRK10803        238 AVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHCcCCH
Confidence            99999999999874

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.28  E-value=0.13  Score=51.62  Aligned_cols=77  Identities=8%  Similarity=0.100  Sum_probs=43.9

Q ss_pred             CHHHHHHHHHHH-HHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005817          157 DIELWFKYMEFC-RQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVE  231 (676)
Q Consensus       157 ~~~lW~~y~~~~-~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~  231 (676)
                      +..-|..++--+ .+.| +..+...|+..+..+|++   +..++..+...+ ..|+++.|...|++.+...|+++.....
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            345555544432 2333 456666777777777765   345555555554 4567777777777777777766444444


Q ss_pred             HHH
Q 005817          232 YLR  234 (676)
Q Consensus       232 y~~  234 (676)
                      +++
T Consensus       220 l~k  222 (263)
T PRK10803        220 MFK  222 (263)
T ss_pred             HHH
Confidence            433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.27  E-value=2.8  Score=47.85  Aligned_cols=225  Identities=19%  Similarity=0.192  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817          391 SQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (676)
Q Consensus       391 ~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~  467 (676)
                      +++.+|.....+.++..|+..   ...++..+-                    .|..+.|..+++..-...+.+......
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r--------------------~gk~~ea~~~Le~~~~~~~~D~~tLq~   82 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFR--------------------LGKGDEALKLLEALYGLKGTDDLTLQF   82 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH--------------------hcCchhHHHHHhhhccCCCCchHHHHH
Confidence            567888888888888888744   223332222                    234455555555444444555555555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhch-HHHHHHHHHHHhhcChhhhHHHH
Q 005817          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADI-LSIFELLKCILTKVSALESESLW  546 (676)
Q Consensus       468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~-~~~~~~f~~Al~~~~~~~~~~lW  546 (676)
                      ....+.+.|..++|..+|++++ +.+|. .++...+...+.+.+.       +... ..+.++|+    .+|. ...-||
T Consensus        83 l~~~y~d~~~~d~~~~~Ye~~~-~~~P~-eell~~lFmayvR~~~-------yk~qQkaa~~LyK----~~pk-~~yyfW  148 (932)
T KOG2053|consen   83 LQNVYRDLGKLDEAVHLYERAN-QKYPS-EELLYHLFMAYVREKS-------YKKQQKAALQLYK----NFPK-RAYYFW  148 (932)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHH-hhCCc-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----hCCc-ccchHH
Confidence            6677889999999999999999 99999 6666666655555432       1111 12233333    2343 345688


Q ss_pred             HHHHHHHHhhh-----------HHHHHHHHHHHHhhhhCCCC-CCCcchHHHHHHHHHHhcCHHHHHHHHHHHH--cCCC
Q 005817          547 LMALKFFMNQK-----------HYFDKLVEIALISVAKDGGG-ESGFSLPSAIINLVIQKDGIQQAREMYKRFL--ALPR  612 (676)
Q Consensus       547 ~~~l~~~~~~~-----------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al--~~~p  612 (676)
                      ....-++....           -.+++.+++.+.    +.|. .....+. .|...+..+|..++|-.++..-+  ..++
T Consensus       149 sV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~----~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~  223 (932)
T KOG2053|consen  149 SVISLILQSIFSENELLDPILLALAEKMVQKLLE----KKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTS  223 (932)
T ss_pred             HHHHHHHHhccCCcccccchhHHHHHHHHHHHhc----cCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccc
Confidence            75332222111           112333333221    1111 1122233 56667778899999999984333  3344


Q ss_pred             CCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005817          613 PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS  663 (676)
Q Consensus       613 ~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~  663 (676)
                      .+..+-....+|-...+      ...+.-++-.+++...+++   |..|.+
T Consensus       224 ~~~~l~~~~~dllk~l~------~w~~l~~l~~~Ll~k~~Dd---y~~~~~  265 (932)
T KOG2053|consen  224 ANLYLENKKLDLLKLLN------RWQELFELSSRLLEKGNDD---YKIYTD  265 (932)
T ss_pred             cchHHHHHHHHHHHHhc------ChHHHHHHHHHHHHhCCcc---hHHHHH
Confidence            44445445555554444      3334434444444443333   777666

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.26  E-value=0.25  Score=54.80  Aligned_cols=152  Identities=10%  Similarity=-0.010  Sum_probs=101.3

Q ss_pred             hcCCCchhHHHHHHHHHHHhccc--CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHH
Q 005817          321 EALPSSFNLRQRFFEIVEATNLA--QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ  398 (676)
Q Consensus       321 ~~~p~~~~~~~~~~~~~~~fe~~--~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~  398 (676)
                      ...|.+.+.|..++.....+...  .....+...++++++..|+...+|-.++..+.-..... +    .....+..+..
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-~----~~~~~l~~a~~  405 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-P----LDEKQLAALST  405 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-C----ccHHHHHHHHH
Confidence            44577767776665544332211  13457888999999999999888777665443211110 0    00234566777


Q ss_pred             HHHHHhhc--cCch-hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 005817          399 VYEEALKN--VPSS-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQL  475 (676)
Q Consensus       399 ~ye~al~~--~~~~-~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~  475 (676)
                      ..++++..  .+.. ..+....-  ...                ..|+++.|...|++|+..+| +...|...+.++...
T Consensus       406 ~~~~a~al~~~~~~~~~~~ala~--~~~----------------~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~  466 (517)
T PRK10153        406 ELDNIVALPELNVLPRIYEILAV--QAL----------------VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELK  466 (517)
T ss_pred             HHHHhhhcccCcCChHHHHHHHH--HHH----------------hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence            77776553  2222 23322211  111                13679999999999999999 577899999999999


Q ss_pred             CCHHHHHHHHHHHhhccCCChH
Q 005817          476 GKLDEARKLAAKLCSGKLSDSV  497 (676)
Q Consensus       476 ~~~~~A~~l~~~al~~~~P~~~  497 (676)
                      |+.++|...|++|+ ...|..+
T Consensus       467 G~~~eA~~~~~~A~-~L~P~~p  487 (517)
T PRK10153        467 GDNRLAADAYSTAF-NLRPGEN  487 (517)
T ss_pred             CCHHHHHHHHHHHH-hcCCCCc
Confidence            99999999999999 8888865

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=1.6  Score=44.39  Aligned_cols=167  Identities=13%  Similarity=0.115  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817          156 GDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM  235 (676)
Q Consensus       156 ~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~  235 (676)
                      ++.++|+.|..|-.. +++++..+|.-+.+..-...++|+..|--.+ -.|.+..|.++..+|    |+++---...+.+
T Consensus        57 ~~~~lWia~C~fhLg-dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka----~k~pL~~RLlfhl  130 (557)
T KOG3785|consen   57 DSLQLWIAHCYFHLG-DYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKA----PKTPLCIRLLFHL  130 (557)
T ss_pred             HHHHHHHHHHHHhhc-cHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhC----CCChHHHHHHHHH
Confidence            467788887777331 2567788888777755555677777665443 345677777666654    4443111111111


Q ss_pred             HHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhH----HHhhhHH
Q 005817          236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLF----REQGLRV  311 (676)
Q Consensus       236 e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  311 (676)
                      ....    .                    +++.|.        .+.+.        + .|..++++.+-    ....++.
T Consensus       131 ahkl----n--------------------dEk~~~--------~fh~~--------L-qD~~EdqLSLAsvhYmR~HYQe  169 (557)
T KOG3785|consen  131 AHKL----N--------------------DEKRIL--------TFHSS--------L-QDTLEDQLSLASVHYMRMHYQE  169 (557)
T ss_pred             HHHh----C--------------------cHHHHH--------HHHHH--------H-hhhHHHHHhHHHHHHHHHHHHH
Confidence            1111    0                    111111        00000        0 00011221111    1235788


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005817          312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR  372 (676)
Q Consensus       312 a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~  372 (676)
                      |..||++.+.-.|+-..+-..+.-.|.+..   -++....++.--++.+|+++.+-...|-
T Consensus       170 AIdvYkrvL~dn~ey~alNVy~ALCyyKlD---Yydvsqevl~vYL~q~pdStiA~NLkac  227 (557)
T KOG3785|consen  170 AIDVYKRVLQDNPEYIALNVYMALCYYKLD---YYDVSQEVLKVYLRQFPDSTIAKNLKAC  227 (557)
T ss_pred             HHHHHHHHHhcChhhhhhHHHHHHHHHhcc---hhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            999999998877764332222212233332   4567888999999999999877555543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.15  E-value=0.075  Score=49.80  Aligned_cols=86  Identities=14%  Similarity=0.077  Sum_probs=59.3

Q ss_pred             hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhh
Q 005817          364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH  442 (676)
Q Consensus       364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~  442 (676)
                      ...+..+|..+..             .+++++|...|+++++..|... ....+...-.-..               ..|
T Consensus        35 a~~~~~lg~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~---------------~~g   86 (172)
T PRK02603         35 AFVYYRDGMSAQA-------------DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA---------------SNG   86 (172)
T ss_pred             HHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH---------------HcC
Confidence            3345566666644             4789999999999998655321 1112211111111               147


Q ss_pred             hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC
Q 005817          443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK  477 (676)
Q Consensus       443 ~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~  477 (676)
                      .++.|...|++++...|.+...+..++..+...|+
T Consensus        87 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  121 (172)
T PRK02603         87 EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE  121 (172)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence            78999999999999999999988888888887776

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.11  E-value=0.0076  Score=39.44  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=30.5

Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005817          451 YEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR  482 (676)
Q Consensus       451 ye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~  482 (676)
                      |++|++.+|.+++.|..++.++...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            78999999999999999999999999999986

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.35  Score=50.14  Aligned_cols=167  Identities=13%  Similarity=-0.026  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh-h
Q 005817          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-S  542 (676)
Q Consensus       464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~-~  542 (676)
                      .-+.-++.+...|++++|.++.-..+ +..+++.+-...+..+.-..          .+.+.+...|+++|+.-|... +
T Consensus       171 a~~lka~cl~~~~~~~~a~~ea~~il-kld~~n~~al~vrg~~~yy~----------~~~~ka~~hf~qal~ldpdh~~s  239 (486)
T KOG0550|consen  171 AKLLKAECLAFLGDYDEAQSEAIDIL-KLDATNAEALYVRGLCLYYN----------DNADKAINHFQQALRLDPDHQKS  239 (486)
T ss_pred             HHHhhhhhhhhcccchhHHHHHHHHH-hcccchhHHHHhcccccccc----------cchHHHHHHHhhhhccChhhhhH
Confidence            33445777788899999999888888 77777765444333222211          157788888999998655322 2


Q ss_pred             HHHHHHHHHHHHhh----------h--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHH---HHHhcCHHHHHHHHHHH
Q 005817          543 ESLWLMALKFFMNQ----------K--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL---VIQKDGIQQAREMYKRF  607 (676)
Q Consensus       543 ~~lW~~~l~~~~~~----------~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~---~~~~g~~~~Ar~iy~~a  607 (676)
                      ..... ..+.++..          +  ..+...|..|+. +.|..    .......|..-   ..++|...+|..--+.+
T Consensus       240 k~~~~-~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~-idP~n----~~~naklY~nra~v~~rLgrl~eaisdc~~A  313 (486)
T KOG0550|consen  240 KSASM-MPKKLEVKKERGNDAFKNGNYRKAYECYTEALN-IDPSN----KKTNAKLYGNRALVNIRLGRLREAISDCNEA  313 (486)
T ss_pred             HhHhh-hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc-CCccc----cchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence            22111 11222111          1  122334444543 34443    33444456543   45688889988888888


Q ss_pred             HcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC
Q 005817          608 LALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ  653 (676)
Q Consensus       608 l~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~  653 (676)
                      +.+.+.-.+-++.-+.-...++      +++.|..-|++|.+...+
T Consensus       314 l~iD~syikall~ra~c~l~le------~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  314 LKIDSSYIKALLRRANCHLALE------KWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhccc
Confidence            8877655554443333333334      778999999999997543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.99  E-value=0.1  Score=45.40  Aligned_cols=83  Identities=18%  Similarity=0.128  Sum_probs=66.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---hHHHHHHHHHHHHHhcccc
Q 005817          441 EHYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD---SVQLWLLRISVEIRCVTRN  514 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~---~~~lW~~~i~l~~~~~~~~  514 (676)
                      .|..++|...|++++..++..   ...++.++..+...|++++|..++++++ ..+|+   +..++..++......|.  
T Consensus        14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~-~~~p~~~~~~~l~~f~Al~L~~~gr--   90 (120)
T PF12688_consen   14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL-EEFPDDELNAALRVFLALALYNLGR--   90 (120)
T ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHHHHCCC--
Confidence            477899999999999986554   4689999999999999999999999999 88898   77788777766655553  


Q ss_pred             CCCCChhchHHHHHHHHHHH
Q 005817          515 SFSPSKADILSIFELLKCIL  534 (676)
Q Consensus       515 ~~~p~~~~~~~~~~~f~~Al  534 (676)
                              .+++.+.+-.++
T Consensus        91 --------~~eAl~~~l~~l  102 (120)
T PF12688_consen   91 --------PKEALEWLLEAL  102 (120)
T ss_pred             --------HHHHHHHHHHHH
Confidence                    455555555554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.94  E-value=0.13  Score=47.84  Aligned_cols=100  Identities=11%  Similarity=0.003  Sum_probs=67.3

Q ss_pred             hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccccccCCCCChh
Q 005817          364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSELPSH  439 (676)
Q Consensus       364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~d~~~~~~~~~  439 (676)
                      ...|..++.....             .++++.|...|++++...+...    .|........                  
T Consensus        35 a~~~~~~g~~~~~-------------~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~------------------   83 (168)
T CHL00033         35 AFTYYRDGMSAQS-------------EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT------------------   83 (168)
T ss_pred             HHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH------------------
Confidence            3456677776654             4779999999999987755321    2222211111                  


Q ss_pred             hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-------hcCCHHHH-------HHHHHHHhhccCCC
Q 005817          440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL-------QLGKLDEA-------RKLAAKLCSGKLSD  495 (676)
Q Consensus       440 ~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~-------~~~~~~~A-------~~l~~~al~~~~P~  495 (676)
                      ..|..+.|+..|++++..+|.....+...+.++.       ..|+++.|       ..++++++ ...|.
T Consensus        84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~-~~~p~  152 (168)
T CHL00033         84 SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAI-ALAPG  152 (168)
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHH-HhCcc
Confidence            1467899999999999999988887777777776       77777644       44555555 45553

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.80  E-value=0.83  Score=44.04  Aligned_cols=129  Identities=16%  Similarity=0.116  Sum_probs=72.0

Q ss_pred             cHHHHHHHHHHHHhcCCCC---hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHHHH---
Q 005817          345 SDDMHDKILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLY---  416 (676)
Q Consensus       345 ~~~~a~~il~~~~~~~p~~---~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~~y---  416 (676)
                      .+..+...++.++..+|.+   +.+.+.+|..+..             .++++.|+..|++-++..|+..  -+-.|   
T Consensus        20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-------------~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g   86 (203)
T PF13525_consen   20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-------------QGDYEEAIAAYERFIKLYPNSPKADYALYMLG   86 (203)
T ss_dssp             -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-------------TT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence            4556666666666666665   3345555555544             3566777777777777666543  11111   


Q ss_pred             -HHHHHHHhc-CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHhcCC
Q 005817          417 -TKFLMDMIA-PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED-----------------IAHRYVTLYLQLGK  477 (676)
Q Consensus       417 -~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~-----------------lw~~~~~l~~~~~~  477 (676)
                       +.+....-. ....|          ++...+|...|+..+...|.++-                 --+.-+.++.+.|.
T Consensus        87 ~~~~~~~~~~~~~~~D----------~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~  156 (203)
T PF13525_consen   87 LSYYKQIPGILRSDRD----------QTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK  156 (203)
T ss_dssp             HHHHHHHHHHH-TT-------------HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHhCccchhcccC----------hHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence             111110000 00111          35567888888888888887521                 12234777888999


Q ss_pred             HHHHHHHHHHHhhccCCChH
Q 005817          478 LDEARKLAAKLCSGKLSDSV  497 (676)
Q Consensus       478 ~~~A~~l~~~al~~~~P~~~  497 (676)
                      +..|..-++.++ +.+|++.
T Consensus       157 y~aA~~r~~~v~-~~yp~t~  175 (203)
T PF13525_consen  157 YKAAIIRFQYVI-ENYPDTP  175 (203)
T ss_dssp             HHHHHHHHHHHH-HHSTTSH
T ss_pred             HHHHHHHHHHHH-HHCCCCc
Confidence            999999999999 8999875

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.76  E-value=0.43  Score=48.72  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~  466 (676)
                      .++++.|...++..-+......   +...|+.+...                  .+.+..|.-+|+......+.++.+..
T Consensus       144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g------------------~e~~~~A~y~f~El~~~~~~t~~~ln  205 (290)
T PF04733_consen  144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG------------------GEKYQDAFYIFEELSDKFGSTPKLLN  205 (290)
T ss_dssp             TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT------------------TTCCCHHHHHHHHHHCCS--SHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC------------------chhHHHHHHHHHHHHhccCCCHHHHH
Confidence            4789999999988755433322   44555544432                  12467899999998777778899999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817          467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT  512 (676)
Q Consensus       467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~  512 (676)
                      ..+...+..|++++|..++.+++ ...|++++.....|-+....|.
T Consensus       206 g~A~~~l~~~~~~eAe~~L~~al-~~~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  206 GLAVCHLQLGHYEEAEELLEEAL-EKDPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHC-CC-CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999 8899999999888887776664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.66  E-value=4.3  Score=44.33  Aligned_cols=50  Identities=18%  Similarity=0.273  Sum_probs=39.0

Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD  495 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~  495 (676)
                      +.++.|...++   ..++.++.+-...++.+-+++++++|.++|+..+ ++.-+
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~-kn~~d  142 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLA-KNNSD  142 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCc
Confidence            34667777776   4456677788889999999999999999999998 54443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.31  Score=50.54  Aligned_cols=124  Identities=12%  Similarity=-0.011  Sum_probs=90.9

Q ss_pred             hhHHHHHHHHHHHHhhccCchh-------------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM-------------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA  456 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~-------------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~  456 (676)
                      .+++..|..-|++|+..++...             .-..++++..-.               ...+.+..|....++++.
T Consensus       221 ~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~---------------lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  221 EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACY---------------LKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHH---------------HhhhhHHHHHHHHHHHHh
Confidence            4678899999999998765211             111222222211               124567899999999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       457 ~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      .+|.++...+.-++-++..|.++.|+..+++++ +..|.|..+-...+.+-.+...         ..++-+++|.+.+..
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~-k~~P~Nka~~~el~~l~~k~~~---------~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLARDDFQKAL-KLEPSNKAARAELIKLKQKIRE---------YEEKEKKMYANMFAK  355 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999 8999998888888777665432         234456677777765


Q ss_pred             cC
Q 005817          537 VS  538 (676)
Q Consensus       537 ~~  538 (676)
                      .+
T Consensus       356 ~~  357 (397)
T KOG0543|consen  356 LA  357 (397)
T ss_pred             cc
Confidence            43

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.46  E-value=0.14  Score=48.00  Aligned_cols=70  Identities=13%  Similarity=-0.028  Sum_probs=59.5

Q ss_pred             hhhHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817          441 EHYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (676)
                      .|+++.|...|++++...|..   ...|..++..+...|++++|...+.+++ ...|.+...|..+..+....+
T Consensus        48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g  120 (172)
T PRK02603         48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-ELNPKQPSALNNIAVIYHKRG  120 (172)
T ss_pred             cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcC
Confidence            367899999999999876543   4689999999999999999999999999 889998888888777766544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.35  E-value=4.2  Score=42.25  Aligned_cols=116  Identities=11%  Similarity=0.044  Sum_probs=76.8

Q ss_pred             cHHHHHHHHHHHHhcCCCChhh-HHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 005817          345 SDDMHDKILSDMQRDFLVDPKY-WDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDM  423 (676)
Q Consensus       345 ~~~~a~~il~~~~~~~p~~~~~-w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~  423 (676)
                      .+..++..+.+..+.- +.|.+ ++.-|+..-             ..++.+++-....++-+.-++..+ ..++....-.
T Consensus        99 ~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~-------------qrgd~~~an~yL~eaae~~~~~~l-~v~ltrarll  163 (400)
T COG3071          99 DFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQ-------------QRGDEDRANRYLAEAAELAGDDTL-AVELTRARLL  163 (400)
T ss_pred             cHHHHHHHHHHhhhcC-cchHHHHHHHHHHHH-------------hcccHHHHHHHHHHHhccCCCchH-HHHHHHHHHH
Confidence            4566666666643333 33444 333333321             257788888888888765333332 1222222222


Q ss_pred             hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005817          424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCS  490 (676)
Q Consensus       424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~  490 (676)
                      +               .++++..|+.-...++...|..+.+-.--.+.+.+.|++.....++.+.-+
T Consensus       164 l---------------~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k  215 (400)
T COG3071         164 L---------------NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK  215 (400)
T ss_pred             H---------------hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            2               146688999999999999999999999999999999999999998888773

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.34  E-value=1.7  Score=41.34  Aligned_cols=47  Identities=11%  Similarity=0.280  Sum_probs=31.6

Q ss_pred             hhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHh
Q 005817          365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMI  424 (676)
Q Consensus       365 ~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~  424 (676)
                      ++++.+|+.++.             .|.++.|...|+-|+...--+-+=-.|+-++...+
T Consensus       238 EtyFYL~K~~l~-------------~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l  284 (297)
T COG4785         238 ETYFYLGKYYLS-------------LGDLDEATALFKLAVANNVYNFVEHRYALLELSLL  284 (297)
T ss_pred             HHHHHHHHHHhc-------------cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            457888998876             57899999999999865332222234555665443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.31  E-value=0.028  Score=36.76  Aligned_cols=32  Identities=13%  Similarity=0.132  Sum_probs=26.0

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 005817          180 LAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAAR  212 (676)
Q Consensus       180 ~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar  212 (676)
                      |++||..+|+++..|..++.+.. ..|+.+.|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence            67888888888888888888875 677888775

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.24  E-value=3.1  Score=40.07  Aligned_cols=58  Identities=17%  Similarity=0.175  Sum_probs=42.7

Q ss_pred             HHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH
Q 005817          169 RQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE  227 (676)
Q Consensus       169 ~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~  227 (676)
                      ...| +..+.+.|++.+..+|.+   ++.++..+.-.+ ..|+...|...|++.++.+|+++.
T Consensus        16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~   77 (203)
T PF13525_consen   16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPK   77 (203)
T ss_dssp             HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcc
Confidence            3444 578999999999999986   355555555555 578999999999999999999864

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.15  E-value=3.2  Score=41.20  Aligned_cols=153  Identities=8%  Similarity=-0.020  Sum_probs=92.1

Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH---HHHHHHHHHHHHhcc---
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDI---AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV---QLWLLRISVEIRCVT---  512 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~l---w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~---~lW~~~i~l~~~~~~---  512 (676)
                      |++++|...|+..+...|.++..   .+..+..+.+.+++++|...+++.+ +.+|+++   ..+...+......+.   
T Consensus        46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi-~~~P~~~~~~~a~Y~~g~~~~~~~~~~~  124 (243)
T PRK10866         46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-RLNPTHPNIDYVLYMRGLTNMALDDSAL  124 (243)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence            67899999999999999987533   3555666678999999999999999 8889764   333333322111110   


Q ss_pred             --ccCCCC---ChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHH
Q 005817          513 --RNSFSP---SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAI  587 (676)
Q Consensus       513 --~~~~~p---~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y  587 (676)
                        .....+   |......+.+.|++-++..|.+...+          .+...+..+-++    +...       .+  .-
T Consensus       125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~----------~A~~rl~~l~~~----la~~-------e~--~i  181 (243)
T PRK10866        125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT----------DATKRLVFLKDR----LAKY-------EL--SV  181 (243)
T ss_pred             hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH----------HHHHHHHHHHHH----HHHH-------HH--HH
Confidence              000000   11123456678888888888654221          111111111111    1000       11  23


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHcCCCCCHHHH
Q 005817          588 INLVIQKDGIQQAREMYKRFLALPRPGLVLY  618 (676)
Q Consensus       588 ~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~  618 (676)
                      +.|..+.|.+..|..=++.++...|.+...-
T Consensus       182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~  212 (243)
T PRK10866        182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATR  212 (243)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHCCCCchHH
Confidence            4567778899999999999998877765533

>PRK11906 transcriptional regulator; Provisional

Probab=95.09  E-value=1.8  Score=46.17  Aligned_cols=128  Identities=12%  Similarity=0.020  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHH---hcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 005817          346 DDMHDKILSDMQ---RDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMD  422 (676)
Q Consensus       346 ~~~a~~il~~~~---~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~  422 (676)
                      .+.+..++.+++   ...|+....+..+|.-++......    -.+.......|...-++|++..+.+..-..-+.+...
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g----~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~  349 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHG----KSELELAAQKALELLDYVSDITTVDGKILAIMGLITG  349 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            346777899999   888888777776665544321000    0012356778888999999887765521111122111


Q ss_pred             HhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817          423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD  495 (676)
Q Consensus       423 ~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~  495 (676)
                      .                 .+..+.+...|++|+..+|.....|...+-+..-.|+.++|+...++|+ +..|.
T Consensus       350 ~-----------------~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al-rLsP~  404 (458)
T PRK11906        350 L-----------------SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL-QLEPR  404 (458)
T ss_pred             h-----------------hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCch
Confidence            1                 2447899999999999999999999999999999999999999999999 88886

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=94.88  E-value=1.7  Score=44.32  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=43.5

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHcCCCC------CH-HHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          586 AIINLVIQKDGIQQAREMYKRFLALPRP------GL-VLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       586 ~y~~~~~~~g~~~~Ar~iy~~al~~~p~------~~-~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      ..+.+..+.|++++|.++|++....+-.      +. .++...+-+-...+      ++..|+..|++..+.+|
T Consensus       160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~------D~v~A~~~~~~~~~~~~  227 (282)
T PF14938_consen  160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMG------DYVAARKALERYCSQDP  227 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHGTTST
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhhCC
Confidence            4567788899999999999999764311      11 24555555555666      88999999999998877

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.85  E-value=0.49  Score=46.69  Aligned_cols=56  Identities=11%  Similarity=0.011  Sum_probs=37.9

Q ss_pred             hhHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817          442 HYISHLLTVYEKAEAMG---CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ  498 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~---p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~  498 (676)
                      |+++.|..+|..++...   |..|+..+..+..+.+.|+.++|..++++.+ +.+|+...
T Consensus       192 g~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~-k~YP~t~a  250 (262)
T COG1729         192 GDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVI-KRYPGTDA  250 (262)
T ss_pred             ccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHCCCCHH
Confidence            33444444555544443   3446778888888888888888888888888 77887643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=94.66  E-value=0.64  Score=40.45  Aligned_cols=85  Identities=15%  Similarity=0.022  Sum_probs=64.6

Q ss_pred             hhHHHHHHHHHHHHhhccCch-hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC---cHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSS-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL---TEDIA  465 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~-~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~---~~~lw  465 (676)
                      .|+.++|+..|++++..-.+. ..-..++..-...-               ..|.+++|..+++.++...|.   +..+.
T Consensus        14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr---------------~LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen   14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR---------------NLGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            578999999999999864332 22233333322111               147899999999999998887   77888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          466 HRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       466 ~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      ..++-.+...|+.++|...+-.++
T Consensus        79 ~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   79 VFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH
Confidence            889989999999999998888777

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.62  E-value=3.5  Score=42.06  Aligned_cols=79  Identities=19%  Similarity=0.121  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHhhccC----chhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817          391 SQMQKAIQVYEEALKNVP----SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (676)
Q Consensus       391 ~~~~~A~~~ye~al~~~~----~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~  466 (676)
                      .++.-|+..++-.+..-.    ...+|..|..|..                    |++++|..+|+.+...+-.+.++|.
T Consensus        36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL--------------------gdY~~Al~~Y~~~~~~~~~~~el~v   95 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL--------------------GDYEEALNVYTFLMNKDDAPAELGV   95 (557)
T ss_pred             ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh--------------------ccHHHHHHHHHHHhccCCCCcccch
Confidence            345666666665553211    1228888776654                    5689999999998887555677888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHh
Q 005817          467 RYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       467 ~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      ..+-..--.|.+.+|..+..++-
T Consensus        96 nLAcc~FyLg~Y~eA~~~~~ka~  118 (557)
T KOG3785|consen   96 NLACCKFYLGQYIEAKSIAEKAP  118 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhCC
Confidence            88777767788999887766643

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.56  E-value=0.1  Score=33.70  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Q 005817          191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS  225 (676)
Q Consensus       191 ~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~  225 (676)
                      +.+|...+...+ ..|+++.|+..|+++++.+|++
T Consensus         1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence            467888888886 6889999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=94.43  E-value=5.8  Score=39.38  Aligned_cols=47  Identities=19%  Similarity=-0.007  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005817          442 HYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKL  488 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~a  488 (676)
                      |.+..|..-++..+...|.+   ++.....+.-+...|..++|.++....
T Consensus       189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            45667777788888877765   445555666677788888887665543

>PRK15331 chaperone protein SicA; Provisional

Probab=94.04  E-value=0.34  Score=44.18  Aligned_cols=84  Identities=7%  Similarity=0.024  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|..+|.-.+...|.+.+.|+-++..+...+ +.+|...|..|..+.+++|..-...+.-.+ ..|+...|+..|+-+
T Consensus        53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l-~l~~~~~A~~~f~~a  131 (165)
T PRK15331         53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL-LMRKAAKARQCFELV  131 (165)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH-HhCCHHHHHHHHHHH
Confidence            567889999999999999999999998887666 689999999999999999998888888776 678999999999999


Q ss_pred             HHhCCCC
Q 005817          219 LRVCPTS  225 (676)
Q Consensus       219 l~~~p~~  225 (676)
                      +. .|..
T Consensus       132 ~~-~~~~  137 (165)
T PRK15331        132 NE-RTED  137 (165)
T ss_pred             Hh-Ccch
Confidence            98 4553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.00  E-value=0.45  Score=42.39  Aligned_cols=87  Identities=11%  Similarity=0.068  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHhhccCchh------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED  463 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~  463 (676)
                      .++++.|++.|+......|...      ++..|+.+..                    ++++.|+..|++-+..+|.++.
T Consensus        23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~--------------------~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ--------------------GDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc--------------------cCHHHHHHHHHHHHHhCCCCCC
Confidence            4789999999999998888532      6777665543                    5689999999999999999865


Q ss_pred             H-HHHH----HHHHHhc-------------CCHHHHHHHHHHHhhccCCChH
Q 005817          464 I-AHRY----VTLYLQL-------------GKLDEARKLAAKLCSGKLSDSV  497 (676)
Q Consensus       464 l-w~~~----~~l~~~~-------------~~~~~A~~l~~~al~~~~P~~~  497 (676)
                      + |..|    +.+....             +....|+.-+++.+ ..+|+|.
T Consensus        83 vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv-~~yP~S~  133 (142)
T PF13512_consen   83 VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLV-RRYPNSE  133 (142)
T ss_pred             ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHH-HHCcCCh
Confidence            3 2222    2222211             12566788888888 7888874

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.94  E-value=0.93  Score=46.30  Aligned_cols=166  Identities=16%  Similarity=0.027  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh
Q 005817          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE  541 (676)
Q Consensus       462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~  541 (676)
                      +-+.+.-+.++...|++++|++++.++      .+.+.-...+++..+.+          .++.+.+.++..-+.-....
T Consensus       102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~----------R~dlA~k~l~~~~~~~eD~~  165 (290)
T PF04733_consen  102 EIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMN----------RPDLAEKELKNMQQIDEDSI  165 (290)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHCCSCCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcCCcHH
Confidence            333444455555667777766544332      34555566666666554          35666666666543222111


Q ss_pred             hHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHH
Q 005817          542 SESLWLMALKFFMNQ--KHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQ  619 (676)
Q Consensus       542 ~~~lW~~~l~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~  619 (676)
                      -..+...|+......  ....-.+|+...    ...+  ..+.+....+-.....|++++|.++++.++...|.++....
T Consensus       166 l~qLa~awv~l~~g~e~~~~A~y~f~El~----~~~~--~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La  239 (290)
T PF04733_consen  166 LTQLAEAWVNLATGGEKYQDAFYIFEELS----DKFG--STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA  239 (290)
T ss_dssp             HHHHHHHHHHHHHTTTCCCHHHHHHHHHH----CCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHH----hccC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence            233444444433221  122333344322    1111  11222223344455677788888877777777777777666


Q ss_pred             HHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCC
Q 005817          620 NCIELENNLASVGDKDSLVNARKLFESALATYDQN  654 (676)
Q Consensus       620 ~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~  654 (676)
                      ..|-+...+|.     ..+.+.......-..+|++
T Consensus       240 Nliv~~~~~gk-----~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  240 NLIVCSLHLGK-----PTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHTT------TCHHHHHHHHHCHHHTTTS
T ss_pred             HHHHHHHHhCC-----ChhHHHHHHHHHHHhCCCC
Confidence            66666555551     2355666666666666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=93.87  E-value=15  Score=42.19  Aligned_cols=162  Identities=17%  Similarity=0.156  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh-hHHHHHHHhccccCCCCCCCc
Q 005817          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK-YWDWLARLKMTDSVSKDGTSE  386 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~-~w~~la~~~~~~~~~~~~~~~  386 (676)
                      ..+.|..+|++|++..|. .++...+|..+.+-.   .+...+++==++-+.+|.++- +|....-......+. .+.  
T Consensus        92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~---~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~-~~~--  164 (932)
T KOG2053|consen   92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREK---SYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSE-NEL--  164 (932)
T ss_pred             hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCC-ccc--
Confidence            345566666666666666 455555555554421   233344444444556666643 354433322211000 000  


Q ss_pred             CcchhHHHHHHHHHHHHhhcc-C--chhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc--CCCc
Q 005817          387 DIVPSQMQKAIQVYEEALKNV-P--SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM--GCLT  461 (676)
Q Consensus       387 ~~~~~~~~~A~~~ye~al~~~-~--~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~--~p~~  461 (676)
                       ...--+.-|....++.++.- +  +..-...|......                  ++..++|..++..-+..  .+.+
T Consensus       165 -~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~------------------~~k~~eal~~l~~~la~~l~~~~  225 (932)
T KOG2053|consen  165 -LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL------------------QGKYQEALEFLAITLAEKLTSAN  225 (932)
T ss_pred             -ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh------------------cccHHHHHHHHHHHHHHhccccc
Confidence             00011233444444444433 1  11122333333222                  24466666666433322  2223


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (676)
Q Consensus       462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (676)
                      +.+-..-.+++...+++.+...+..+++ ...|++
T Consensus       226 ~~l~~~~~dllk~l~~w~~l~~l~~~Ll-~k~~Dd  259 (932)
T KOG2053|consen  226 LYLENKKLDLLKLLNRWQELFELSSRLL-EKGNDD  259 (932)
T ss_pred             hHHHHHHHHHHHHhcChHHHHHHHHHHH-HhCCcc
Confidence            4444456667777777777777777777 666665

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.81  E-value=1.3  Score=46.12  Aligned_cols=99  Identities=12%  Similarity=0.067  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIE---------------LWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD  203 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~---------------lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~  203 (676)
                      ...|..-|+||+..+..+..               +.++.+--+.+.+ +..+.....++|...|+++..-+.-++-.+ 
T Consensus       224 ~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-  302 (397)
T KOG0543|consen  224 FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL-  302 (397)
T ss_pred             HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-
Confidence            56788899999887763221               1222222223333 567899999999999999998888888776 


Q ss_pred             hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005817          204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTY  239 (676)
Q Consensus       204 ~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~  239 (676)
                      ..|+++.||..|+++++..|.+..+=.+++++-...
T Consensus       303 ~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  303 ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            577999999999999999999999999988876543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.59  E-value=6.2  Score=36.74  Aligned_cols=131  Identities=11%  Similarity=0.076  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh--
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL--  540 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~--  540 (676)
                      .--...+.-+.+.|++.+|+..|+++++..+-++..+..-+++.....++          ...+..++++-...-|..  
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~----------~A~a~~tLe~l~e~~pa~r~  159 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE----------FAAAQQTLEDLMEYNPAFRS  159 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc----------HHHHHHHHHHHhhcCCccCC
Confidence            34556677788999999999999999988899998888887766655442          455656666655543221  


Q ss_pred             -hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHH----HHHHHHHcCCCC
Q 005817          541 -ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR----EMYKRFLALPRP  613 (676)
Q Consensus       541 -~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar----~iy~~al~~~p~  613 (676)
                       +..-+   +...+...+  ...+..|+.++.+. |.      +.-...|..|+.++|..++|+    .+++.+.+..|.
T Consensus       160 pd~~Ll---~aR~laa~g~~a~Aesafe~a~~~y-pg------~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H  229 (251)
T COG4700         160 PDGHLL---FARTLAAQGKYADAESAFEVAISYY-PG------PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH  229 (251)
T ss_pred             CCchHH---HHHHHHhcCCchhHHHHHHHHHHhC-CC------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence             11111   112222221  34677777776532 32      233346888888887665544    445555544443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.56  E-value=1.5  Score=39.20  Aligned_cols=62  Identities=18%  Similarity=0.055  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          173 NGRMKKVLAQVIRFHPKV-----PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~-----~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~  237 (676)
                      +..+.+.|+.....+|..     .+||+.++.+.   .+++..|...++|-++.||+|+.+=..+...-+
T Consensus        26 Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~---~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   26 YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK---QGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            678999999999999974     47888888874   679999999999999999999875444443333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.53  E-value=0.36  Score=51.22  Aligned_cols=52  Identities=8%  Similarity=-0.056  Sum_probs=44.9

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 005817          440 VEHYISHLLTVYEKAEAMGCLTEDI---AHRYVTLYLQLGKLDEARKLAAKLCSGK  492 (676)
Q Consensus       440 ~~~~~~~a~~iye~al~~~p~~~~l---w~~~~~l~~~~~~~~~A~~l~~~al~~~  492 (676)
                      ..+.++.|...|++|+..+|.+.+.   |...+..+...|++++|+..+++|+ ..
T Consensus        87 ~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL-el  141 (453)
T PLN03098         87 SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL-RD  141 (453)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh
Confidence            4577899999999999999998754   8888999999999999999999999 54

>PRK15331 chaperone protein SicA; Provisional

Probab=93.53  E-value=0.95  Score=41.37  Aligned_cols=85  Identities=7%  Similarity=-0.001  Sum_probs=71.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      +|+++.|..+|.-....+|.+++.|+.++..+...++++.|...|..|. ...++++.-.....+.....+         
T Consensus        50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~-~l~~~dp~p~f~agqC~l~l~---------  119 (165)
T PRK15331         50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF-TLLKNDYRPVFFTGQCQLLMR---------  119 (165)
T ss_pred             CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcccCCCCccchHHHHHHHhC---------
Confidence            4789999999999999999999999999999999999999999999998 665666555555555555555         


Q ss_pred             hchHHHHHHHHHHHhh
Q 005817          521 ADILSIFELLKCILTK  536 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~  536 (676)
                       +.+.+++.|+.++..
T Consensus       120 -~~~~A~~~f~~a~~~  134 (165)
T PRK15331        120 -KAAKARQCFELVNER  134 (165)
T ss_pred             -CHHHHHHHHHHHHhC
Confidence             478888889999874

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.49  E-value=0.33  Score=51.52  Aligned_cols=69  Identities=9%  Similarity=-0.063  Sum_probs=61.7

Q ss_pred             hCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Q 005817          153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGV---WIYAAAWEFDHNLNVTAARALMQNGLRVC  222 (676)
Q Consensus       153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~l---W~~~a~~e~~~~~~~~~Ar~~~~ral~~~  222 (676)
                      ..|++...|..+...+.+.| ++.+...|+++|.++|+++..   |...+.... ..|+++.|...|++|+...
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Confidence            58999999999999988887 689999999999999999854   888888775 7899999999999999973

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.28  E-value=12  Score=42.61  Aligned_cols=125  Identities=15%  Similarity=0.064  Sum_probs=68.1

Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChh
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~  521 (676)
                      |-++.|..+|.++-..+        ..-.++...|..++|.++.+.-- +.+  -..-+..|+......+          
T Consensus       814 gMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~D-RiH--Lr~Tyy~yA~~Lear~----------  872 (1416)
T KOG3617|consen  814 GMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKD-RIH--LRNTYYNYAKYLEARR----------  872 (1416)
T ss_pred             hhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhcc-cee--hhhhHHHHHHHHHhhc----------
Confidence            55778888888755432        23456677788888887766533 222  2234555665544333          


Q ss_pred             chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHH
Q 005817          522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR  601 (676)
Q Consensus       522 ~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar  601 (676)
                      |++.+.+.|+++=  ++   +..+..+..++.    ..++.-..+    .  .     -+.++.+|.+++...|+.+.|.
T Consensus       873 Di~~AleyyEK~~--~h---afev~rmL~e~p----~~~e~Yv~~----~--~-----d~~L~~WWgqYlES~GemdaAl  932 (1416)
T KOG3617|consen  873 DIEAALEYYEKAG--VH---AFEVFRMLKEYP----KQIEQYVRR----K--R-----DESLYSWWGQYLESVGEMDAAL  932 (1416)
T ss_pred             cHHHHHHHHHhcC--Ch---HHHHHHHHHhCh----HHHHHHHHh----c--c-----chHHHHHHHHHHhcccchHHHH
Confidence            5777777777762  22   122333322211    111111111    0  1     1245557777777778888888


Q ss_pred             HHHHHH
Q 005817          602 EMYKRF  607 (676)
Q Consensus       602 ~iy~~a  607 (676)
                      ..|..|
T Consensus       933 ~~Y~~A  938 (1416)
T KOG3617|consen  933 SFYSSA  938 (1416)
T ss_pred             HHHHHh
Confidence            888777

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.96  E-value=2.3  Score=39.44  Aligned_cols=30  Identities=10%  Similarity=0.107  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          208 VTAARALMQNGLRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       208 ~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~  237 (676)
                      ++.|..-|+.||+++|+..+....+..-..
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            667888999999999987665555554433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.95  E-value=1.2  Score=41.32  Aligned_cols=96  Identities=10%  Similarity=0.002  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----c------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQR-----K------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH---  204 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~-----~------~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~---  204 (676)
                      .+++++..|+.....+|.|.+.+.++.-.+...     +      ...+..-|+.||.++|+..+.....+.-..+.   
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            578899999999999999999888877665432     1      24567889999999999765443333322111   


Q ss_pred             -------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817          205 -------NLNVTAARALMQNGLRVCPTSEELWVEYLRM  235 (676)
Q Consensus       205 -------~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~  235 (676)
                             ...++.|...|++|+...|++ +++..-+.+
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~  122 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEM  122 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHH
Confidence                   124778999999999999997 444444433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.92  E-value=0.2  Score=32.21  Aligned_cols=34  Identities=21%  Similarity=0.139  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (676)
Q Consensus       462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (676)
                      ++.|...+..+...|++++|+..+++++ ...|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al-~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKAL-ELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHCcCC
Confidence            4678999999999999999999999999 888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=91.64  E-value=7.9  Score=39.41  Aligned_cols=157  Identities=15%  Similarity=0.152  Sum_probs=91.6

Q ss_pred             hhhHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC------hhhHHHHHHHhccc
Q 005817          307 QGLRVLQTIYSGAVEA---LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD------PKYWDWLARLKMTD  377 (676)
Q Consensus       307 ~~~~~a~~iy~~Al~~---~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~------~~~w~~la~~~~~~  377 (676)
                      ++++.|...|.+|...   ..+.......+.+....+... ....+...+++++..+-..      ......+|..+...
T Consensus        49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~  127 (282)
T PF14938_consen   49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ  127 (282)
T ss_dssp             T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred             hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            4567777777777643   222222223333332222222 4556677777776654322      23455666666431


Q ss_pred             cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV  450 (676)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i  450 (676)
                                  .++++.|++.|++|+.......       .....+.+...                  .++++.|..+
T Consensus       128 ------------~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~------------------l~~y~~A~~~  177 (282)
T PF14938_consen  128 ------------LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR------------------LGRYEEAIEI  177 (282)
T ss_dssp             ------------T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH------------------TT-HHHHHHH
T ss_pred             ------------cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH------------------hCCHHHHHHH
Confidence                        2689999999999998543211       22222333222                  3679999999


Q ss_pred             HHHHHHcC---CC-c---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817          451 YEKAEAMG---CL-T---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD  495 (676)
Q Consensus       451 ye~al~~~---p~-~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~  495 (676)
                      |++.....   +. .   .+.++.-+-..+..|++..|...+++.. ..+|.
T Consensus       178 ~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~-~~~~~  228 (282)
T PF14938_consen  178 YEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC-SQDPS  228 (282)
T ss_dssp             HHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG-TTSTT
T ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC
Confidence            99988752   22 1   2466777777788899999999999998 77774

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.48  E-value=1.6  Score=40.90  Aligned_cols=88  Identities=14%  Similarity=-0.011  Sum_probs=70.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccC
Q 005817          441 EHYISHLLTVYEKAEAMGCLTED-----IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS  515 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~-----lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~  515 (676)
                      .|.++.|..-|..|+...|..+.     +|..-+...++.+..+.|+.-+.+|+ ..+|.......+++.++.+..    
T Consensus       108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai-el~pty~kAl~RRAeayek~e----  182 (271)
T KOG4234|consen  108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI-ELNPTYEKALERRAEAYEKME----  182 (271)
T ss_pred             cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH-hcCchhHHHHHHHHHHHHhhh----
Confidence            36799999999999999887542     56667777889999999999999999 999999888888888887664    


Q ss_pred             CCCChhchHHHHHHHHHHHhhcCh
Q 005817          516 FSPSKADILSIFELLKCILTKVSA  539 (676)
Q Consensus       516 ~~p~~~~~~~~~~~f~~Al~~~~~  539 (676)
                            .++.+.+=|.+.+...|.
T Consensus       183 ------k~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  183 ------KYEEALEDYKKILESDPS  200 (271)
T ss_pred             ------hHHHHHHHHHHHHHhCcc
Confidence                  256666666776666554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=91.44  E-value=15  Score=36.11  Aligned_cols=183  Identities=15%  Similarity=0.106  Sum_probs=108.2

Q ss_pred             hhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHhcccCcHHHHHHHHHHHHhcCCCChhh-HHHH--HHHhc
Q 005817          300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEI-VEATNLAQSDDMHDKILSDMQRDFLVDPKY-WDWL--ARLKM  375 (676)
Q Consensus       300 ~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~-~~~fe~~~~~~~a~~il~~~~~~~p~~~~~-w~~l--a~~~~  375 (676)
                      ....+..|+++.|...|+......|.+.-.-...++. ++.+. .+.+..+...+++-++.+|+++.+ |..+  +...+
T Consensus        41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~  119 (254)
T COG4105          41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF  119 (254)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence            3444556789999999999998888875444444443 33333 236789999999999999999775 4333  22222


Q ss_pred             cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh------HHHHH-----HHHHHHHhcCccccccCCCCChhhhhhH
Q 005817          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM------IFDLY-----TKFLMDMIAPKKEETRDSELPSHVEHYI  444 (676)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~------lw~~y-----~~~~~~~~~~~~~d~~~~~~~~~~~~~~  444 (676)
                      ......     .--+.....|..-|++-|+.-|+++      .-..+     +..++.....           ....|..
T Consensus       120 ~~i~~~-----~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary-----------Y~kr~~~  183 (254)
T COG4105         120 FQIDDV-----TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY-----------YLKRGAY  183 (254)
T ss_pred             ccCCcc-----ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHhcCh
Confidence            211100     0013455678888899999888754      11111     1112111000           0112445


Q ss_pred             HHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817          445 SHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL  502 (676)
Q Consensus       445 ~~a~~iye~al~~~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~  502 (676)
                      ..|..-++..++..|.+   .+-...+.+.+...|-.++|.+.-.-.- .+.|++.  |..
T Consensus       184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~-~N~p~s~--~~~  241 (254)
T COG4105         184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG-ANYPDSQ--WYK  241 (254)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH-hcCCCCc--chh
Confidence            56666667777765554   3445556666777888888876554444 6788876  544

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=91.37  E-value=4.1  Score=35.65  Aligned_cols=113  Identities=12%  Similarity=0.125  Sum_probs=66.9

Q ss_pred             HHHHHHHHHH-hhcChhhhHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCH
Q 005817          525 SIFELLKCIL-TKVSALESESLWLMALKFFMNQK------HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI  597 (676)
Q Consensus       525 ~~~~~f~~Al-~~~~~~~~~~lW~~~l~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~  597 (676)
                      ..++.|+..| ..-..++.+..|..|+.+.+.+-      ..+..+++++++.+.....-.+-+-....++.+.-   ..
T Consensus         3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~---~~   79 (125)
T smart00777        3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYAD---NC   79 (125)
T ss_pred             HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH---hc
Confidence            3456678887 43445566888999888776432      24566777777654322211011111122233322   23


Q ss_pred             HHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHH
Q 005817          598 QQAREMYKRFLAL--PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFES  646 (676)
Q Consensus       598 ~~Ar~iy~~al~~--~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~  646 (676)
                      +.++.+|.-+.+.  ......+|..++.+-...+      +...|.++|+.
T Consensus        80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g------~~~~A~~iy~~  124 (125)
T smart00777       80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAG------RYKKADEVYQL  124 (125)
T ss_pred             CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcC------CHHHHHHHHHc
Confidence            4478888877543  2334558888888766777      89999999975

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=90.92  E-value=0.48  Score=47.12  Aligned_cols=63  Identities=14%  Similarity=0.082  Sum_probs=56.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI  504 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i  504 (676)
                      +|+.++|..+|+.|+...|.++++.+.++.|....+++-+|...|-+|+ ...|.+.+....+.
T Consensus       129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL-tisP~nseALvnR~  191 (472)
T KOG3824|consen  129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL-TISPGNSEALVNRA  191 (472)
T ss_pred             ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee-eeCCCchHHHhhhh
Confidence            4789999999999999999999999999999999999999999999999 88898776655543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.87  E-value=1.7  Score=42.99  Aligned_cols=96  Identities=13%  Similarity=0.154  Sum_probs=71.3

Q ss_pred             hhhhhhhHHHhhhHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCCh---hhHH
Q 005817          297 SQKSVDLFREQGLRVLQTIYSGAVEALPSS-----FNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDP---KYWD  368 (676)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~-----~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~---~~w~  368 (676)
                      +.....++-.+++..|...|...++.-|++     ..||+-  +.  .|. .+.+..+..++..+.+.+|+++   +..+
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLG--e~--~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLG--ES--LYA-QGDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHH--HH--HHh-cccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            455556666678999999999999988775     355532  11  122 2467889999999999999884   5566


Q ss_pred             HHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch
Q 005817          369 WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS  410 (676)
Q Consensus       369 ~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~  410 (676)
                      .++.....             .++.+.|+.+|++.++.-|+.
T Consensus       220 Klg~~~~~-------------l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         220 KLGVSLGR-------------LGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHHH-------------hcCHHHHHHHHHHHHHHCCCC
Confidence            77766543             577899999999999998864

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.64  E-value=19  Score=35.58  Aligned_cols=184  Identities=10%  Similarity=0.077  Sum_probs=105.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH-HHHHHHHHHHHHhccccCC
Q 005817          441 EHYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-QLWLLRISVEIRCVTRNSF  516 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~-~lW~~~i~l~~~~~~~~~~  516 (676)
                      .|++++|...|+.....+|.+   +..-+..+.-..+.++++.|+...++-+ +.+|+++ .-|..|+.........+..
T Consensus        47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi-~lyP~~~n~dY~~YlkgLs~~~~i~~~  125 (254)
T COG4105          47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI-RLYPTHPNADYAYYLKGLSYFFQIDDV  125 (254)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCCCCCChhHHHHHHHHHHhccCCcc
Confidence            377999999999999887775   4555666666668999999999999999 8999864 3355555444432211111


Q ss_pred             CCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcC
Q 005817          517 SPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDG  596 (676)
Q Consensus       517 ~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~  596 (676)
                      +-+......+..-|+.-+...|.+.-..-=...+.++       .   .    .+...       .  ..-+.|..+.|.
T Consensus       126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~-------~---d----~LA~~-------E--m~IaryY~kr~~  182 (254)
T COG4105         126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL-------N---D----ALAGH-------E--MAIARYYLKRGA  182 (254)
T ss_pred             ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH-------H---H----HHHHH-------H--HHHHHHHHHhcC
Confidence            1111224456666777777777653111000001111       0   0    01110       1  123566777778


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          597 IQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       597 ~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      ...|..=++.+++..|...........|+......    .+..-++-..+.|..+.
T Consensus       183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~l----gl~~~a~~~~~vl~~N~  234 (254)
T COG4105         183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYAL----GLTDEAKKTAKVLGANY  234 (254)
T ss_pred             hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh----CChHHHHHHHHHHHhcC
Confidence            88887778888877666555444444443322111    23455555566666654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=90.37  E-value=15  Score=34.25  Aligned_cols=127  Identities=14%  Similarity=0.041  Sum_probs=86.7

Q ss_pred             cHHHHHHHHHHHHh-cCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHHHHHH
Q 005817          345 SDDMHDKILSDMQR-DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFL  420 (676)
Q Consensus       345 ~~~~a~~il~~~~~-~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y~~~~  420 (676)
                      .+..+...|.+.+. .|.+++.+..-+|+..+.             .+++-.|..++++..+..|.-   .--..|....
T Consensus       104 r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-------------~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700         104 RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-------------IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-------------hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            46678888877655 688888888888877654             356778888888888766531   1222333333


Q ss_pred             HHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHH----HHHHHHHhhccCCCh
Q 005817          421 MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEA----RKLAAKLCSGKLSDS  496 (676)
Q Consensus       421 ~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A----~~l~~~al~~~~P~~  496 (676)
                      -.                  +|.+..|+..|+.+++..| .+..-+.|+.|+.++|...+|    ..+.+.+. +..|+.
T Consensus       171 aa------------------~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~-r~~~H~  230 (251)
T COG4700         171 AA------------------QGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDTAK-RSRPHY  230 (251)
T ss_pred             Hh------------------cCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH-hcchhH
Confidence            22                  4677889999999999855 577889999999999976665    45566666 556654


Q ss_pred             HHHHHHHH
Q 005817          497 VQLWLLRI  504 (676)
Q Consensus       497 ~~lW~~~i  504 (676)
                      -+-...|+
T Consensus       231 rkh~reW~  238 (251)
T COG4700         231 RKHHREWI  238 (251)
T ss_pred             HHHHHHHH
Confidence            43333333

>PRK04841 transcriptional regulator MalT; Provisional

Probab=90.30  E-value=49  Score=39.87  Aligned_cols=300  Identities=13%  Similarity=0.075  Sum_probs=152.5

Q ss_pred             hhhHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHH-hcccCcHHHHHHHHHHHHhcCCCChh-----hHHHHHHHhc
Q 005817          307 QGLRVLQTIYSGAVEALPS-----SFNLRQRFFEIVEA-TNLAQSDDMHDKILSDMQRDFLVDPK-----YWDWLARLKM  375 (676)
Q Consensus       307 ~~~~~a~~iy~~Al~~~p~-----~~~~~~~~~~~~~~-fe~~~~~~~a~~il~~~~~~~p~~~~-----~w~~la~~~~  375 (676)
                      ++++.+...+..+....+.     .........-.... +-..+..+.+...+++++...|....     .+..++....
T Consensus       423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~  502 (903)
T PRK04841        423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH  502 (903)
T ss_pred             CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence            4567777788777655432     11111111111110 11123567788888888776555421     1233333332


Q ss_pred             cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (676)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~--~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~  453 (676)
                      .             .++++.|...+++++.....  ...+..+.........             ...|+++.|...+++
T Consensus       503 ~-------------~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~-------------~~~G~~~~A~~~~~~  556 (903)
T PRK04841        503 C-------------KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL-------------FAQGFLQAAYETQEK  556 (903)
T ss_pred             H-------------cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH-------------HHCCCHHHHHHHHHH
Confidence            2             57889999999999865332  1111111111111100             024778888888888


Q ss_pred             HHHc-----CCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC----C-hHHHHHHHHHHHHHhccccCCCCCh
Q 005817          454 AEAM-----GCL---TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS----D-SVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       454 al~~-----~p~---~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P----~-~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      ++..     .+.   ...++...+..+...|++++|...+.+++ ....    . ....+...+.+....|         
T Consensus       557 al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~la~~~~~~G---------  626 (903)
T PRK04841        557 AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL-EVLSNYQPQQQLQCLAMLAKISLARG---------  626 (903)
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH-HhhhccCchHHHHHHHHHHHHHHHcC---------
Confidence            8764     111   12234455677778899999999999987 4322    1 1222222333444444         


Q ss_pred             hchHHHHHHHHHHHhhcChhhhHHHHHHHH-----HHHHhh--hHHHHHHHHHHHHhhhhCCCCCCCcc--hHHHHHHHH
Q 005817          521 ADILSIFELLKCILTKVSALESESLWLMAL-----KFFMNQ--KHYFDKLVEIALISVAKDGGGESGFS--LPSAIINLV  591 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l-----~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~y~~~~  591 (676)
                       +.+.+...+.++............|....     ......  .+.+...+...   ..+..+. ....  +....+...
T Consensus       627 -~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~---~~~~~~~-~~~~~~~~~~~a~~~  701 (903)
T PRK04841        627 -DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQA---PKPEFAN-NHFLQGQWRNIARAQ  701 (903)
T ss_pred             -CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCCcc-chhHHHHHHHHHHHH
Confidence             46778888888765321110011111100     111111  12222222211   1111110 0000  011234446


Q ss_pred             HHhcCHHHHHHHHHHHHcCCCC---C---HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC
Q 005817          592 IQKDGIQQAREMYKRFLALPRP---G---LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ  653 (676)
Q Consensus       592 ~~~g~~~~Ar~iy~~al~~~p~---~---~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~  653 (676)
                      ...|+.++|..++++++.....   .   ..............|      +.+.|+..+++|+.....
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G------~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG------RKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHhCc
Confidence            6789999999999999764211   1   123333444445666      789999999999998763

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=89.95  E-value=0.65  Score=36.69  Aligned_cols=67  Identities=21%  Similarity=0.109  Sum_probs=46.5

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc---CCC-h---HHHHHHHHHHHHHhccccCCCCChhchHHHHHHHH
Q 005817          459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK---LSD-S---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK  531 (676)
Q Consensus       459 p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~---~P~-~---~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~  531 (676)
                      |....++...+..+...|++++|+..+++++ ..   .++ +   ...+...+.+....|          +.+++.+.|+
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~lg~~~~~~g----------~~~~A~~~~~   70 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKAL-DIEEQLGDDHPDTANTLNNLGECYYRLG----------DYEEALEYYQ   70 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHHHHTTTHHHHHHHHHHHHHHHHHHTT----------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHcC----------CHHHHHHHHH
Confidence            3445678889999999999999999999998 42   332 2   334444455555544          4788888888


Q ss_pred             HHHhh
Q 005817          532 CILTK  536 (676)
Q Consensus       532 ~Al~~  536 (676)
                      +|++.
T Consensus        71 ~al~i   75 (78)
T PF13424_consen   71 KALDI   75 (78)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88753

...

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.59  E-value=1  Score=28.94  Aligned_cols=33  Identities=15%  Similarity=0.105  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Q 005817          191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT  224 (676)
Q Consensus       191 ~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~  224 (676)
                      +.+|...+.... ..|+++.|...|+++|+++|+
T Consensus         1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence            357888888775 688999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.55  E-value=45  Score=38.34  Aligned_cols=85  Identities=16%  Similarity=0.234  Sum_probs=56.4

Q ss_pred             CChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhh
Q 005817          362 VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVE  441 (676)
Q Consensus       362 ~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~  441 (676)
                      .++.+|-+++++.-.             .|..+.|..+|..|-..            |.+-.+.             =.+
T Consensus       910 ~d~~L~~WWgqYlES-------------~GemdaAl~~Y~~A~D~------------fs~VrI~-------------C~q  951 (1416)
T KOG3617|consen  910 RDESLYSWWGQYLES-------------VGEMDAALSFYSSAKDY------------FSMVRIK-------------CIQ  951 (1416)
T ss_pred             cchHHHHHHHHHHhc-------------ccchHHHHHHHHHhhhh------------hhheeeE-------------eec
Confidence            346788888887633             57889999999888431            1111110             014


Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      |++++|-.+-+.     ..+...-...+..+...|++.+|...|-+|-
T Consensus       952 Gk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  952 GKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             cCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            667777666544     3445566778889999999999988877764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=89.18  E-value=0.54  Score=29.83  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (676)
Q Consensus       464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (676)
                      ..+..+..+.+.|++++|..++++.+ ..+|+|
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~-~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLI-KRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHH-HHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH-HHCcCC
Confidence            34566777778899999999999999 889975

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=88.95  E-value=2.3  Score=38.25  Aligned_cols=57  Identities=7%  Similarity=-0.062  Sum_probs=30.0

Q ss_pred             HHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005817          162 FKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (676)
Q Consensus       162 ~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral  219 (676)
                      ..+++.+...| +..+..++.+++..+|.+..+|...++... ..|+...|..+|++..
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHH
Confidence            33333333333 345566666666666666666666666554 4556666665555554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.45  E-value=0.98  Score=29.02  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (676)
Q Consensus       462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (676)
                      +..|..-+..+...|++++|...+++++ +..|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRAL-ELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHH-HHCcCC
Confidence            3578888999999999999999999999 878763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.26  E-value=7.5  Score=36.63  Aligned_cols=91  Identities=20%  Similarity=0.151  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~  466 (676)
                      .+.++.|...|..||..+|...   --..|..--...               ...+..+.|+.-..+|++.+|.......
T Consensus       108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~---------------iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen  108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAAL---------------IKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHH---------------HHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            4789999999999999998532   222232221111               1235567888899999999999888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817          467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (676)
Q Consensus       467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (676)
                      .-+..+.+...+++|+.=|.+.+ ...|..
T Consensus       173 RRAeayek~ek~eealeDyKki~-E~dPs~  201 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALEDYKKIL-ESDPSR  201 (271)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHH-HhCcch
Confidence            88889999999999999999998 777754

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=87.48  E-value=6.8  Score=43.07  Aligned_cols=118  Identities=14%  Similarity=0.183  Sum_probs=76.5

Q ss_pred             cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHh
Q 005817          345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMI  424 (676)
Q Consensus       345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~  424 (676)
                      ....++.+++.+...+|++.-.....|+++..             .++++.|++.|++++.....-+.......++..+.
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~-------------~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~  314 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERL-------------KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC  314 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH
Confidence            45689999999999999987766677887754             58899999999999853222111222223333332


Q ss_pred             cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHhcCCH-------HHHHHHHHHH
Q 005817          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR-YVTLYLQLGKL-------DEARKLAAKL  488 (676)
Q Consensus       425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~-~~~l~~~~~~~-------~~A~~l~~~a  488 (676)
                      .             ..+.+.++|...+.+....+.-+..+|.. -+-.+...++.       ++|..++.++
T Consensus       315 ~-------------~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  315 H-------------MFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             H-------------HHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            1             12466889999999988875544444333 35556667766       5555555543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.46  E-value=32  Score=34.13  Aligned_cols=69  Identities=17%  Similarity=0.132  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817          443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT  512 (676)
Q Consensus       443 ~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~  512 (676)
                      .+..|.=+|+..-.+.|.++.+-...+...+..+++++|..+++.|+ ...|+.++.....+-+....|.
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL-~kd~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL-DKDAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHhCC
Confidence            47788899999888788899999999999999999999999999999 7788888888888877776665

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.00  E-value=1.3  Score=28.32  Aligned_cols=32  Identities=9%  Similarity=0.038  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Q 005817          192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT  224 (676)
Q Consensus       192 ~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~  224 (676)
                      .+|...+.... ..|+++.|...|+++++..|+
T Consensus         2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence            56888888875 688999999999999999884

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=86.84  E-value=6.3  Score=35.41  Aligned_cols=61  Identities=11%  Similarity=0.048  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (676)
Q Consensus       464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~  535 (676)
                      .....+..+...|++++|..++.+++ ...|.+..+|...+..+...|.          ...+.++|++..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l-~~dP~~E~~~~~lm~~~~~~g~----------~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRAL-ALDPYDEEAYRLLMRALAAQGR----------RAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTT-HHHHHHHHHHHHHTT-----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHCcC----------HHHHHHHHHHHHH
Confidence            44556777778888888888888888 7888888888888888887764          4555555555543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=85.15  E-value=1.6  Score=43.60  Aligned_cols=60  Identities=13%  Similarity=0.257  Sum_probs=52.2

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~  233 (676)
                      .+++.++|+-|+.+.|++|++-+.++.|. |.++++-.|-.+|-+||...|.+.+....-.
T Consensus       132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~-E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  132 LEKAMTLFEHALALAPTNPQILIEMGQFR-EMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHhHHH-HhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            47899999999999999999999999997 5778999999999999999998866544433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=83.97  E-value=42  Score=32.30  Aligned_cols=195  Identities=16%  Similarity=0.040  Sum_probs=104.9

Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHH-HHHHHHhccccCCCCCh
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR-ISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~-i~l~~~~~~~~~~~p~~  520 (676)
                      |-..-||--|..++...|.-|+++-..+-.+...|+++.|...++..+ +..|...-....+ |.++- .|.        
T Consensus        79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~-ELDp~y~Ya~lNRgi~~YY-~gR--------  148 (297)
T COG4785          79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGIALYY-GGR--------  148 (297)
T ss_pred             hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh-ccCCcchHHHhccceeeee-cCc--------
Confidence            344556777889999999999999999999999999999999999999 8888765433333 22221 111        


Q ss_pred             hchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHH-HHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHH
Q 005817          521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDK-LVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ  599 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~  599 (676)
                        ..-+.+-|.+--+.-|.+....+|....+ .......+.. +.+++.. .  +     ..-|-...+++..  |.+. 
T Consensus       149 --~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~-~--d-----~e~WG~~iV~~yL--gkiS-  214 (297)
T COG4785         149 --YKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEK-S--D-----KEQWGWNIVEFYL--GKIS-  214 (297)
T ss_pred             --hHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHh-c--c-----HhhhhHHHHHHHH--hhcc-
Confidence              22222222333333344445678874221 1111122221 2233321 1  1     1234323345543  2222 


Q ss_pred             HHHHHHHHHcCCCCCHHH----HHHHHHH---HhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhh
Q 005817          600 AREMYKRFLALPRPGLVL----YQNCIEL---ENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETK  667 (676)
Q Consensus       600 Ar~iy~~al~~~p~~~~l----~~~~i~l---E~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~  667 (676)
                      ...+++++......+..+    -..+-.|   ...+|      +++.|-.+|.-|+...-- .-+=.+|+-||..
T Consensus       215 ~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G------~~~~A~~LfKLaiannVy-nfVE~RyA~~EL~  282 (297)
T COG4785         215 EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG------DLDEATALFKLAVANNVY-NFVEHRYALLELS  282 (297)
T ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHH
Confidence            234566665544333321    1222222   23445      788999999888875221 1344566677754

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=82.34  E-value=2.1  Score=27.34  Aligned_cols=32  Identities=25%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD  495 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~  495 (676)
                      .+|...+.++...|++++|...+++++ +..|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~-~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKAL-ELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHH-HHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC
Confidence            578899999999999999999999999 65553

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=82.26  E-value=1.9  Score=33.98  Aligned_cols=49  Identities=24%  Similarity=0.237  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHHHHHHHc----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          441 EHYISHLLTVYEKAEAM----GCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~----~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      .|.+++|+..|++|+..    ++..   ...+...+..+...|++++|...+++++
T Consensus        18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen   18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47789999999999865    2222   3467778999999999999999999998

...

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=82.01  E-value=9.1  Score=37.15  Aligned_cols=92  Identities=9%  Similarity=0.131  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005817          142 RILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR  220 (676)
Q Consensus       142 ~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~  220 (676)
                      -+..-|-||+...|..+..|.+-+--..+.+ .+.+..-..||+++.|+....-.....+.+ ...+++.|...++||..
T Consensus        28 ~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l-~s~~~~eaI~~Lqra~s  106 (284)
T KOG4642|consen   28 DAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL-QSKGYDEAIKVLQRAYS  106 (284)
T ss_pred             hHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH-hhccccHHHHHHHHHHH
Confidence            3556999999999999999988776555555 467788888999999998877777777765 45689999999999953


Q ss_pred             hC---C--CCHHHHHHHHH
Q 005817          221 VC---P--TSEELWVEYLR  234 (676)
Q Consensus       221 ~~---p--~~~~lW~~y~~  234 (676)
                      ..   |  ...++|..+..
T Consensus       107 l~r~~~~~~~~di~~~L~~  125 (284)
T KOG4642|consen  107 LLREQPFTFGDDIPKALRD  125 (284)
T ss_pred             HHhcCCCCCcchHHHHHHH
Confidence            32   2  22567766554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=80.31  E-value=78  Score=32.91  Aligned_cols=125  Identities=10%  Similarity=0.037  Sum_probs=74.8

Q ss_pred             hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcC-CCCC---
Q 005817          541 ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPG---  614 (676)
Q Consensus       541 ~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~-~p~~---  614 (676)
                      .....|...++.....+  +.+..++..+.....+..  ...+.+...++.+++..|+..+|....+..+.. ....   
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~--~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE--SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            34557776665443333  334444544432111111  013566667899999999999999998888761 1100   


Q ss_pred             ------------------------------HHHHHHHHHHHhhc-cCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005817          615 ------------------------------LVLYQNCIELENNL-ASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS  663 (676)
Q Consensus       615 ------------------------------~~l~~~~i~lE~~~-~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~  663 (676)
                                                    ...+.....+-... .. .+..+.+.+.+.|..|++..|+....|..|+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSK-LSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence                                          01222233222222 00 01237899999999999999988889999998


Q ss_pred             HHhhc
Q 005817          664 TETKV  668 (676)
Q Consensus       664 fE~~~  668 (676)
                      |..+.
T Consensus       301 ~~~~~  305 (352)
T PF02259_consen  301 FNDKL  305 (352)
T ss_pred             HHHHH
Confidence            87653

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=80.27  E-value=84  Score=33.23  Aligned_cols=172  Identities=10%  Similarity=0.049  Sum_probs=95.1

Q ss_pred             hhHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcccc
Q 005817          442 HYISHLLTVYEKAEAM----GCLTEDIAHRYVTLYLQ---LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRN  514 (676)
Q Consensus       442 ~~~~~a~~iye~al~~----~p~~~~lw~~~~~l~~~---~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~  514 (676)
                      .+++....+.+..-..    .+.++.+-..||--+.+   .|+.++|+.++..++....+.+++.+......+...-. .
T Consensus       155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~-~  233 (374)
T PF13281_consen  155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFL-E  233 (374)
T ss_pred             hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH-H
Confidence            3466777777665444    23467788899999988   89999999999996646666777877776655542200 0


Q ss_pred             CCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh----hhHHHHHHHHHHHHhhhhCCCCCCCcchHH--HHH
Q 005817          515 SFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMN----QKHYFDKLVEIALISVAKDGGGESGFSLPS--AII  588 (676)
Q Consensus       515 ~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~y~  588 (676)
                      ...-+....+++.+.|.+|...-+.. -..|-...+-....    ....++++.-+.-..+......++...++.  .++
T Consensus       234 s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~  312 (374)
T PF13281_consen  234 SNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLL  312 (374)
T ss_pred             cCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence            00001124678888899998754321 11111111101111    112233332111111111110111233331  234


Q ss_pred             HHHHHhcCHHHHHHHHHHHHcCCCCCH
Q 005817          589 NLVIQKDGIQQAREMYKRFLALPRPGL  615 (676)
Q Consensus       589 ~~~~~~g~~~~Ar~iy~~al~~~p~~~  615 (676)
                      +...-.|+.++|.+.+++++...|+..
T Consensus       313 Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  313 EASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            445568999999999999998866554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	676
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-11
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-06
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	9e-11
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-09
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-08
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	7e-07
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	1e-05
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	1e-04
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.4 bits (200), Expect = 5e-16
 Identities = 91/637 (14%), Positives = 201/637 (31%), Gaps = 158/637 (24%)

Query: 44  DVVQYRLERMVDELD--DLE--RRGLFTRHEISEIVKQ-------RRKFEYRLKRPSPLK 92
           D++    +  VD  D  D++   + + ++ EI  I+          R F   L +   + 
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 93  QDYLAYI---EYESQLDALR-RLRKKSIGRDEGRERRVSKKMKKSVSDFS--GVARILEI 146
           Q ++  +    Y+  +  ++   R+ S+      E+R   ++      F+   V+R+   
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPY 137

Query: 147 YRL--AVMRFKGDIELWFKYMEFCRQRKNGRMKKVLA-QVIRFHPKVP----GV-WIYAA 198
            +L  A++  +    +    +        G  K  +A  V   +         + W+   
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGS-----G--KTWVALDVCLSYKVQCKMDFKIFWL--- 187

Query: 199 AWEFDHNL-NVTAARALMQNGLRVC-------------PTSEELWVEYLRMELTYLNKLK 244
                 NL N  +   +++   ++               ++ +L +  ++ EL  L K K
Sbjct: 188 ------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 245 ARKVALGEDKGTLVRDH-RDADEKRWINEN-KGLFMPLDGEVENT-DGSQPENMESQKSV 301
             +  L      LV  + ++A      N + K L      +V +    +   ++      
Sbjct: 242 PYENCL------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 302 DLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF 360
                ++   +L        + LP          E++       S      I+++  RD 
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPR---------EVLTTNPRRLS------IIAESIRDG 340

Query: 361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQK---AIQVYEEALKNVPSSMIFDLYT 417
           L     W  +   K+T  +    +   + P++ +K    + V+  +  ++P+ ++  ++ 
Sbjct: 341 LATWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWF 397

Query: 418 KFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLY-LQL- 475
                     K +                   V  K      + +      +++  + L 
Sbjct: 398 D-------VIKSDVMV----------------VVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 476 --GKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFEL---L 530
              KL+    L   +      D   +         +    +   P   D      +   L
Sbjct: 435 LKVKLENEYALHRSIV-----DHYNI--------PKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 531 KCILTKVSALESESLWLMALKF----FMNQKHYFDKLVEIALISVAKDGGGESGFSLPSA 586
           K      +    E + L  + F    F+ QK        I   S A +  G    S+ + 
Sbjct: 482 K------NIEHPERMTLFRMVFLDFRFLEQK--------IRHDSTAWNASG----SILNT 523

Query: 587 IINLVIQKDGIQQAREMYKRFLA-----LPRPGLVLY 618
           +  L   K  I      Y+R +      LP+    L 
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 9e-10
 Identities = 61/422 (14%), Positives = 121/422 (28%), Gaps = 124/422 (29%)

Query: 340 TNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV--PSQMQKAI 397
               +    +  ILS  +  F+ +   +D      M  S+      + I+     +   +
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDN---FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 398 QVYEEALKNVPSSMIFDL--------YTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT 449
           +++   L +    M+           Y KFLM  I   K E R   + +    YI     
Sbjct: 66  RLF-WTLLSKQEEMVQKFVEEVLRINY-KFLMSPI---KTEQRQPSMMT--RMYIEQRDR 118

Query: 450 VY--------------EKAEAM-GCLTEDIAHRYVTLYLQLGKLDEARK--LAAKLCSGK 492
           +Y              +    +   L E    + V +   LG    + K  +A  +C   
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG----SGKTWVALDVCL-- 172

Query: 493 LSDSVQL-------WLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESL 545
            S  VQ        W   +++      +N  SP    +L + + L   +       S+  
Sbjct: 173 -SYKVQCKMDFKIFW---LNL------KNCNSPE--TVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 546 ---------WLMALKFFMNQKHY------------------FD---K-LVEIALISVAKD 574
                        L+  +  K Y                  F+   K L+      V   
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 575 GGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL-----ALPR------PGLV-----LY 618
               +   +     ++ +  D   + + +  ++L      LPR      P  +       
Sbjct: 281 LSAATTTHISLDHHSMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 619 QNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST------ETKVSFSL 672
           ++ +   +N   V + D L    +   + L   +      R  +           +   L
Sbjct: 338 RDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEY-----RKMFDRLSVFPPSAHIPTIL 391

Query: 673 LC 674
           L 
Sbjct: 392 LS 393

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 81/476 (17%), Positives = 149/476 (31%), Gaps = 150/476 (31%)

Query: 9   YWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDLERRGLFTR 68
           +WL L+   C+S  ++               L M   + Y+++       D        +
Sbjct: 185 FWLNLK--NCNSPETV---------------LEMLQKLLYQIDPNWTSRSDHSSN---IK 224

Query: 69  HEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSI------------ 116
             I  I       +  L+R        L    YE+ L  L  ++                
Sbjct: 225 LRIHSI-------QAELRR-------LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 117 -GRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKG-----DIELWFKYMEFCRQ 170
             R             K V+DF   A    I                  L  KY++ CR 
Sbjct: 271 TTRF------------KQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKYLD-CRP 315

Query: 171 RK--------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH-------NLNVTAAR--- 212
           +         N R   ++A+ IR        W +    +           L     R   
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 213 ---ALMQNGLRVCPTS--EELWVEYLRMEL-TYLNKLKARKVALGEDKGTLVRDH----- 261
              ++      + PT     +W + ++ ++   +NKL    +   + K + +        
Sbjct: 376 DRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 262 -------RDADEKRWIN--------ENKGLFMP-LDGEVENTDGSQPENMESQKSVDLFR 305
                    A  +  ++        ++  L  P LD    +  G   +N+E  + + LFR
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 306 E--QGLRVLQT--IYSG-AVEALPSSFNLRQ--RFFE--IVEATNLAQSDDMHDKILSDM 356
                 R L+    +   A  A  S  N  Q  +F++  I +      +D  ++++++ +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD------NDPKYERLVNAI 548

Query: 357 QRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ-----VYEEALKNV 407
             DFL  PK  + L   K TD +              + A+      ++EEA K V
Sbjct: 549 L-DFL--PKIEENLICSKYTDLL--------------RIALMAEDEAIFEEAHKQV 587

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 64.3 bits (156), Expect = 2e-11
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 140 VARILEIYRLAVMRFKGDIEL-WFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYA 197
             ++  IY   +     D  L + +YM+F R+ +     + +  +          V++ A
Sbjct: 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174

Query: 198 AAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
           A  E+  + + + A  + + GL+      E  + Y+            R +
Sbjct: 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 225

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 10/125 (8%), Positives = 39/125 (31%), Gaps = 18/125 (14%)

Query: 141 ARILEIYRLAVMRFKGDIELWFKYMEFC---------------RQRKNGRMKKVLAQVIR 185
            R++  Y   ++      ++W++  ++                 +  +     +  + I 
Sbjct: 33  KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 92

Query: 186 -FHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP-TSEELWVEYLRMELTYLNKL 243
               K   ++   A +E +  +      ++    L +       ++++Y++         
Sbjct: 93  TLLKKNMLLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 151

Query: 244 KARKV 248
             R +
Sbjct: 152 SGRMI 156

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 5/111 (4%)

Query: 142 RILEIYRLAVMRF-KGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPG-VWIYAA 198
               IY  A+    K ++ L+F Y ++   R    ++  +  +++      P  V+I   
Sbjct: 82  EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 141

Query: 199 AWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL-KARKV 248
            +       + + R + +       T   ++V    ME         A K+
Sbjct: 142 KFARRAE-GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 63.7 bits (154), Expect = 9e-11
 Identities = 62/529 (11%), Positives = 144/529 (27%), Gaps = 99/529 (18%)

Query: 146 IYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN 205
           +    +     D++ W   +   + +   + +K   +++   P     W      E    
Sbjct: 1   MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAK 60

Query: 206 LNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDAD 265
            N      L Q  L       +LW         YL+ ++  K  L   K  + + +  A 
Sbjct: 61  -NYDKVEKLFQRCLMKVL-HIDLWKC-------YLSYVRETKGKLPSYKEKMAQAYDFAL 111

Query: 266 EKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPS 325
           +K  +                   +     E+Q+   + R         +Y        +
Sbjct: 112 DKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR---------VYQ---RGCVN 159

Query: 326 SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDP-KYWDWLARLKMTDSVSKDGT 384
                ++ +          +  +  K++ D  RD++       ++   +K  D  +    
Sbjct: 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219

Query: 385 SEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYI 444
            ++      Q                 ++  Y ++          E  +           
Sbjct: 220 PQNTPQEAQQVD---------------MWKKYIQW----------EKSNPLRTEDQTLIT 254

Query: 445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504
             ++  YE+   +     DI +       Q  KL   +        G ++++        
Sbjct: 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK--------GDMNNAKLFSDEAA 306

Query: 505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHY----- 559
           ++  R +                             ++  L+     +  ++  Y     
Sbjct: 307 NIYERAI------------------------STLLKKNMLLYFAYADYEESRMKYEKVHS 342

Query: 560 -FDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLY 618
            +++L+ I  I                  +    + +GI+  R ++K+     R    +Y
Sbjct: 343 IYNRLLAIEDIDPTLVY---------IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393

Query: 619 QNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETK 667
                +E   +   DK     A K+FE  L  Y         Y    + 
Sbjct: 394 VTAALMEYYCS--KDKSV---AFKIFELGLKKYGDIPEYVLAYIDYLSH 437

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 140 VARILEIYRLAVMRFKGDIEL-WFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYA 197
             ++  IY   +     D  L + +YM+F R+ +     + +  +          V++ A
Sbjct: 337 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396

Query: 198 AAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
           A  E+  + + + A  + + GL+      E  + Y+            R +
Sbjct: 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 447

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 59/498 (11%), Positives = 147/498 (29%), Gaps = 60/498 (12%)

Query: 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAA 198
           + +  + Y   V +F      W  Y+E   + KN  +++K+  + +     +  +W    
Sbjct: 28  IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID-LWKCYL 86

Query: 199 AWEFDHNLNVTAARALMQNGLRVCP-------TSEELWVEYLRMELTYLNKLK----ARK 247
           ++  +    + + +  M                S ++WV+Y+                R 
Sbjct: 87  SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146

Query: 248 VALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ 307
            A+         +     E+ W + NK          +     +  +  + + V    E 
Sbjct: 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET 206

Query: 308 GLRVLQ----TIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILSDMQRDFL 361
            ++ L     ++            ++ +++  +E            +  +++   ++  L
Sbjct: 207 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266

Query: 362 VDPKYWD-WLARLKMTDSVSKDGTSEDIV---PSQMQKAIQVYEEALKNVP--SSMIFDL 415
           V   + D W    +  +  SK    +  +        +A  +YE A+  +   + +++  
Sbjct: 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326

Query: 416 YTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED-IAHRYVTLYLQ 474
           Y  +    +  K E+                   +Y +  A+  +    +  +Y+    +
Sbjct: 327 YADYEESRM--KYEKVHS----------------IYNRLLAIEDIDPTLVYIQYMKFARR 368

Query: 475 LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534
              +   R +  K           +++    +E  C    S   S A    IFEL     
Sbjct: 369 AEGIKSGRMIFKK-AREDARTRHHVYVTAALMEYYC----SKDKSVAF--KIFELGLKKY 421

Query: 535 TKVSALESESLWLMALKFFMNQKHY--FDKLVEIALISVAKDGGGESGFSLPSAIINLVI 592
                       L  + +  +         L E  L S +            +  +    
Sbjct: 422 GD-----IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW--ARFLAFES 474

Query: 593 QKDGIQQAREMYKRFLAL 610
               +    ++ KR    
Sbjct: 475 NIGDLASILKVEKRRFTA 492

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 53/524 (10%), Positives = 146/524 (27%), Gaps = 67/524 (12%)

Query: 142 RILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAW 200
            ++      +     DI L+ K ++     K   ++ +   ++    P +  +W    + 
Sbjct: 50  DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSL 109

Query: 201 EFDH--NLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV 258
           EFD    L+      ++   L     + +  +      +TY+ K         E +  ++
Sbjct: 110 EFDKMEELDAAVIEPVLARCLSKELGNND--LSLWLSYITYVRKKNDIITGGEEARNIVI 167

Query: 259 RDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSG 318
           +  +   +K        +F P   +  N      E+ +     +   +Q ++ ++ +Y  
Sbjct: 168 QAFQVVVDKC------AIFEPKSIQFWNEYLHFLEHWKPVNKFE--EQQRVQYIRKLYKT 219

Query: 319 AVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378
            +             ++         +     + + ++   ++     +     +     
Sbjct: 220 LLCQPMDCLE---SMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT---- 272

Query: 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPS 438
               G   ++  +  Q       +  +     ++        +   +  K E  D    +
Sbjct: 273 ---KGLKRNLPITLNQATESNLPKPNEYDVQQLLIW---LEWIRWESDNKLELSDDLHKA 326

Query: 439 HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498
            + +       VY +A    C   +I         +            KL    + +S  
Sbjct: 327 RMTY-------VYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV 379

Query: 499 LWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKH 558
           L                    +  ILS  + +   L  +   +  +   +          
Sbjct: 380 LAFSLSEQYEL---NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436

Query: 559 YFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-L 617
           Y                            +N + +  G+  +R+++ +   L +     +
Sbjct: 437 Y-------------------------CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI 471

Query: 618 YQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDY 661
           Y     +E +++          A K+ E  L  +  +      Y
Sbjct: 472 YLENAYIEYHISKDTKT-----ACKVLELGLKYFATDGEYINKY 510

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 32/211 (15%), Positives = 63/211 (29%), Gaps = 21/211 (9%)

Query: 57  LDDLERRGLFTRHEISEIVKQRRK-FEYRLKRPSP----LKQDYLAYIEYESQLDALRRL 111
           L  LE      + E  + V+  RK ++  L +P      + Q Y  + +  +QL A R +
Sbjct: 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHI 251

Query: 112 RKKSIGRDEGRERRVSKKMKKSVSDF------SGVARILEIYRLAVMRFKGDIELWFKYM 165
            + S        R + +               +                   + +W +++
Sbjct: 252 GELS--AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWI 309

Query: 166 EFCRQRKNG--------RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217
            +    K          RM  V  Q  +     P +W   A ++ + N + T     ++ 
Sbjct: 310 RWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369

Query: 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
           G +  P S  L               +    
Sbjct: 370 GQQCIPNSAVLAFSLSEQYELNTKIPEIETT 400

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 14/200 (7%)

Query: 63  RGLFTR------HEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSI 116
           R  + R        +SE+ K    FE  L + +  K        ++S     ++++    
Sbjct: 109 RNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168

Query: 117 GRDEGRERR---VSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN 173
           G       R   +  +    +      +R+  I+   +  F    E++F Y E+      
Sbjct: 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ 228

Query: 174 G-RMKKVLAQVIRFHPKVPGVWIYAAAWE----FDHNLNVTAARALMQNGLRVCPTSEEL 228
             + KKV+ + I     +     Y    +    +       +               + L
Sbjct: 229 KEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288

Query: 229 WVEYLRMELTYLNKLKARKV 248
            + +L   L        RK+
Sbjct: 289 RINHLNYVLKKRGLELFRKL 308

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 159 ELWFKYMEFCRQRKNG-RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217
            L   ++ +  +++     +K+  ++       P V+IY A  E+    +      +  +
Sbjct: 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVG-PHVFIYCAFIEYYATGSRATPYNIFSS 345

Query: 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
           GL   P S  L  E+    L   ++  AR +
Sbjct: 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	676
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	100.0
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	100.0
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	100.0
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.98
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.97
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.92
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.89
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.87
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.87
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.83
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.83
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.83
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.81
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.81
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.8
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.71
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.71
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.68
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.67
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.66
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.66
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.65
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.62
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.56
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.49
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.46
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.45
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.44
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.38
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.38
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.37
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.35
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.34
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.33
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.33
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.29
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.27
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.26
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.26
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.25
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.24
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.23
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.2
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	99.18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.15
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.14
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.11
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.09
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	99.09
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.06
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.04
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.99
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.99
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.95
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.93
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.91
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.9
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.89
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.82
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.78
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.75
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.73
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.73
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.72
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.71
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.7
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.69
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.68
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.65
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.64
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.63
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.63
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.61
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.61
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.6
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.59
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.58
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.58
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.57
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.56
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.56
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.53
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.52
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.52
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.52
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.48
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.48
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.47
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.45
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.44
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.43
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.42
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.42
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.42
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.42
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.42
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.4
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.4
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.36
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.34
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.33
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.33
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.33
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.31
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.3
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.29
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.29
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.28
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.27
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.27
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.27
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.24
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.22
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.2
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.2
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.2
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.19
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.15
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.13
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.12
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.01
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.99
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.98
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.97
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.96
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.95
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.94
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.92
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.9
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.89
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.88
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.88
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	97.88
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.87
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.83
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.82
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.82
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.77
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.77
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.76
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.76
4aez_C	223	MAD3, mitotic spindle checkpoint component MAD3; c	97.76
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.74
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.73
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.73
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.66
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	97.66
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.62
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.62
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.61
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.61
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.55
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	97.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.51
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.51
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.51
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.5
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.49
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.46
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.43
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.34
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.31
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.27
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.26
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.15
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.09
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.02
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.0
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.9
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.85
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.85
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.79
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.68
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	96.6
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.58
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	96.56
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.48
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.25
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.21
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.01
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.92
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.58
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	94.83
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	94.68
4aez_C	223	MAD3, mitotic spindle checkpoint component MAD3; c	94.16
1klx_A	138	Cysteine rich protein B; structural genomics, heli	94.03
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.42
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	92.92
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	92.73
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.72
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.08
1klx_A	138	Cysteine rich protein B; structural genomics, heli	91.49
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	90.56
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	88.96
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	87.14
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	84.65
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	81.37

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=100.00  E-value=5.7e-39  Score=362.25  Aligned_cols=438  Identities=11%  Similarity=0.087  Sum_probs=326.3

Q ss_pred             hhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCC
Q 005817           77 QRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKG  156 (676)
Q Consensus        77 ~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~  156 (676)
                      +...||..|.++|.+...|++||+++...                                ..+.+++.+|+|++..||.
T Consensus        51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~--------------------------------~~~~~aR~vyEraL~~fP~   98 (679)
T 4e6h_A           51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSL--------------------------------KQWKQVYETFDKLHDRFPL   98 (679)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------------------TCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCcCCHHHHHHHHHHHHhc--------------------------------CcHHHHHHHHHHHHHHCCC
Confidence            56789999999999999999999997531                                1357889999999999999


Q ss_pred             CHHHHHHHHHHHHHccC----chHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHh--
Q 005817          157 DIELWFKYMEFCRQRKN----GRMKKVLAQVIRFHP--KVPGVWIYAAAWEFDHNLN-------VTAARALMQNGLRV--  221 (676)
Q Consensus       157 ~~~lW~~y~~~~~~~~~----~~~~~~~~ral~~~P--~~~~lW~~~a~~e~~~~~~-------~~~Ar~~~~ral~~--  221 (676)
                      +..+|..|++++.+.+.    ..++.+|+|||..+|  .++++|..|+.+..+.++.       .+.+|.+|++|+..  
T Consensus        99 ~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG  178 (679)
T 4e6h_A           99 MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCA  178 (679)
T ss_dssp             CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence            99999999999988753    578999999999994  5889999999998654432       24567999999985  


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhh
Q 005817          222 --CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK  299 (676)
Q Consensus       222 --~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (676)
                        +|.+..+|..|+.|+....          ..                                          ..++ 
T Consensus       179 ~~d~~s~~iW~~Yi~f~~~~~----------~~------------------------------------------~~~e-  205 (679)
T 4e6h_A          179 IFEPKSIQFWNEYLHFLEHWK----------PV------------------------------------------NKFE-  205 (679)
T ss_dssp             TTCSSCHHHHHHHHHHHHTCC----------CC------------------------------------------SHHH-
T ss_pred             cccccchHHHHHHHHHHHhcc----------cc------------------------------------------CcHH-
Confidence              5668899999999987530          00                                          0000 


Q ss_pred             hhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccC
Q 005817          300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSV  379 (676)
Q Consensus       300 ~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~  379 (676)
                           ..+.++.++.+|++|+. +|...  ...++..|..|+.......++.++....                      
T Consensus       206 -----eq~~~~~~R~iy~raL~-iP~~~--~~~~w~~Y~~fe~~~~~~~a~~~~~e~~----------------------  255 (679)
T 4e6h_A          206 -----EQQRVQYIRKLYKTLLC-QPMDC--LESMWQRYTQWEQDVNQLTARRHIGELS----------------------  255 (679)
T ss_dssp             -----HHHHHHHHHHHHHHHTT-SCCSS--HHHHHHHHHHHHHHHCTTTHHHHHHHHH----------------------
T ss_pred             -----HHhHHHHHHHHHHHHHh-CccHH--HHHHHHHHHHHHHhcCcchHHHHHHHhh----------------------
Confidence                 01256789999999996 55431  2233344455542111112233222211                      


Q ss_pred             CCCCCCcCcchhHHHHHHHHHHH------Hhhc-------------cCc--------hhHHHHHHHHHHHHhcCcccccc
Q 005817          380 SKDGTSEDIVPSQMQKAIQVYEE------ALKN-------------VPS--------SMIFDLYTKFLMDMIAPKKEETR  432 (676)
Q Consensus       380 ~~~~~~~~~~~~~~~~A~~~ye~------al~~-------------~~~--------~~lw~~y~~~~~~~~~~~~~d~~  432 (676)
                                 ..++.|+.+|.+      +|..             +|.        ..+|..|+.|+...... .++  
T Consensus       256 -----------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~-l~~--  321 (679)
T 4e6h_A          256 -----------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLE-LSD--  321 (679)
T ss_dssp             -----------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTC-CCH--
T ss_pred             -----------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCcc-ccc--
Confidence                       122333333322      2211             120        13899999998862110 000  


Q ss_pred             CCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817          433 DSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR-KLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (676)
Q Consensus       433 ~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~-~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (676)
                              ....++++.+|++|+...|..+++|+.|+.++...|+.++|+ .+|++|+ ..+|.+..+|..++.++...+
T Consensus       322 --------~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi-~~~P~s~~Lwl~~a~~ee~~~  392 (679)
T 4e6h_A          322 --------DLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ-QCIPNSAVLAFSLSEQYELNT  392 (679)
T ss_dssp             --------HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT
T ss_pred             --------hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhC
Confidence                    123567889999999999999999999999999999999996 9999999 899999999999999999876


Q ss_pred             cccCCCCChhchHHHHHHHHHHHhhc-----------Ch---------hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Q 005817          512 TRNSFSPSKADILSIFELLKCILTKV-----------SA---------LESESLWLMALKFFMNQK--HYFDKLVEIALI  569 (676)
Q Consensus       512 ~~~~~~p~~~~~~~~~~~f~~Al~~~-----------~~---------~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~  569 (676)
                                ++++++++|++++..+           |.         .....+|..|+.+..+.+  +.++++|++|++
T Consensus       393 ----------~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          393 ----------KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                      4899999999999864           21         023458999987654443  568889999886


Q ss_pred             hhhhCCCCCCCcchHHHHHHHHHHhcC-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHH
Q 005817          570 SVAKDGGGESGFSLPSAIINLVIQKDG-IQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESAL  648 (676)
Q Consensus       570 ~~~~~~~~~~~~~~~~~y~~~~~~~g~-~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al  648 (676)
                      ..++.     ...++..++.++.+.++ .++||+||++++...|.+..+|..|++||...+      +.++||++|++|+
T Consensus       463 ~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~------~~~~AR~lferal  531 (679)
T 4e6h_A          463 LKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN------EESQVKSLFESSI  531 (679)
T ss_dssp             TGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHHT
T ss_pred             hcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC------CHHHHHHHHHHHH
Confidence            52222     13444456667777654 899999999999999999999999999999988      8999999999999


Q ss_pred             hhCC---CCchHHHHHHHHHhhcCCccc
Q 005817          649 ATYD---QNTSLWRDYYSTETKVSFSLL  673 (676)
Q Consensus       649 ~~~~---~~~~lW~~y~~fE~~~G~~~~  673 (676)
                      ...|   ....+|..|++||.++|+.+.
T Consensus       532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~  559 (679)
T 4e6h_A          532 DKISDSHLLKMIFQKVIFFESKVGSLNS  559 (679)
T ss_dssp             TTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            9987   345999999999999999864

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=100.00  E-value=4.5e-34  Score=318.88  Aligned_cols=431  Identities=14%  Similarity=0.151  Sum_probs=320.2

Q ss_pred             HhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHH
Q 005817           80 KFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIE  159 (676)
Q Consensus        80 ~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~  159 (676)
                      .||..|..+|.+...|+.|+++ ...                                +...+++.+|++++..+|.+..
T Consensus         1 ~le~al~~~P~~~~~w~~l~~~-~~~--------------------------------~~~~~a~~~~e~al~~~P~~~~   47 (530)
T 2ooe_A            1 MAEKKLEENPYDLDAWSILIRE-AQN--------------------------------QPIDKARKTYERLVAQFPSSGR   47 (530)
T ss_dssp             CHHHHHHHCTTCHHHHHHHHHH-HHS--------------------------------SCHHHHHHHHHHHHTTCTTCHH
T ss_pred             ChhhHhhhCCCCHHHHHHHHHH-HHh--------------------------------CCHHHHHHHHHHHHHHCCCCHH
Confidence            3789999999999999999985 211                                1257889999999999999999


Q ss_pred             HHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHH----HHHHHHHhC---CCCHHHHHH
Q 005817          160 LWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARA----LMQNGLRVC---PTSEELWVE  231 (676)
Q Consensus       160 lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~----~~~ral~~~---p~~~~lW~~  231 (676)
                      +|..|++++.+.| .+.++.+|++|+..+| ++.+|+.|+.+..+..|+++.||.    +|++++..+   |.+..+|..
T Consensus        48 ~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~  126 (530)
T 2ooe_A           48 FWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVD  126 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            9999999999887 5789999999999999 688999999988777788877665    999998764   567899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHH
Q 005817          232 YLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRV  311 (676)
Q Consensus       232 y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (676)
                      |+.|+....          ...                         .                 +      ...++++.
T Consensus       127 ~~~~~~~~~----------~~~-------------------------~-----------------~------~~~~~~~~  148 (530)
T 2ooe_A          127 YINFLKGVE----------AVG-------------------------S-----------------Y------AENQRITA  148 (530)
T ss_dssp             HHHHHHHSC----------CCS-------------------------S-----------------T------THHHHHHH
T ss_pred             HHHHHhcCC----------Ccc-------------------------c-----------------H------HHHhHHHH
Confidence            999987530          000                         0                 0      01246789


Q ss_pred             HHHHHHHHHhcCCCch--hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcc
Q 005817          312 LQTIYSGAVEALPSSF--NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV  389 (676)
Q Consensus       312 a~~iy~~Al~~~p~~~--~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~  389 (676)
                      |+.+|++|++ .|...  .+|..    +..|+.......+..++..                                 .
T Consensus       149 a~~~y~~al~-~P~~~~~~~~~~----~~~~e~~~~~~~~~~~l~~---------------------------------~  190 (530)
T 2ooe_A          149 VRRVYQRGCV-NPMINIEQLWRD----YNKYEEGINIHLAKKMIED---------------------------------R  190 (530)
T ss_dssp             HHHHHHHHTT-SCCTTHHHHHHH----HHHHHHHHCHHHHHHHHHT---------------------------------T
T ss_pred             HHHHHHHHHh-chhhhHHHHHHH----HHHHHHhhchhHHHHHHHH---------------------------------h
Confidence            9999999999 66542  34443    3334311111111111110                                 1


Q ss_pred             hhHHHHHHHHHHH------Hhhc----cC-c--------hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817          390 PSQMQKAIQVYEE------ALKN----VP-S--------SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV  450 (676)
Q Consensus       390 ~~~~~~A~~~ye~------al~~----~~-~--------~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i  450 (676)
                      .+++..|+.+|++      +++.    +| +        ..+|..|+.++...... .++.         .....++..+
T Consensus       191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~-~~~~---------~~~~~~a~~~  260 (530)
T 2ooe_A          191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR-TEDQ---------TLITKRVMFA  260 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC-CSCS---------HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc-CCcc---------hhHHHHHHHH
Confidence            3456667776665      5543    23 2        24999999988762110 0010         1123578899


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhccccC
Q 005817          451 YEKAEAMGCLTEDIAHRYVTLYLQ-------LGKLD-------EARKLAAKLCSG-KLSDSVQLWLLRISVEIRCVTRNS  515 (676)
Q Consensus       451 ye~al~~~p~~~~lw~~~~~l~~~-------~~~~~-------~A~~l~~~al~~-~~P~~~~lW~~~i~l~~~~~~~~~  515 (676)
                      |++|+..+|.++++|+.|+.++.+       .|+++       +|+.++++|+ + .+|++..+|..++.++...|    
T Consensus       261 y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al-~~~~p~~~~l~~~~~~~~~~~g----  335 (530)
T 2ooe_A          261 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEESRM----  335 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHhcC----
Confidence            999999999999999999999986       68876       8999999999 6 68999999999999998876    


Q ss_pred             CCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHH-
Q 005817          516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVI-  592 (676)
Q Consensus       516 ~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~-  592 (676)
                            +.++++++|++++...|. ....+|..++.++.+.+  +.++.+|++|+.. .|..     .......+..+. 
T Consensus       336 ------~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~~~~-----~~~~~~~a~~~~~  402 (530)
T 2ooe_A          336 ------KYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED-ARTR-----HHVYVTAALMEYY  402 (530)
T ss_dssp             ------CHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTCC-----THHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-cCCc-----hHHHHHHHHHHHH
Confidence                  489999999999985443 22348988776554333  4567778877753 2211     111111122222 


Q ss_pred             HhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc----hHHHHHHHHHhhc
Q 005817          593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT----SLWRDYYSTETKV  668 (676)
Q Consensus       593 ~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~----~lW~~y~~fE~~~  668 (676)
                      ..|+.++|+.+|++++..+|.+..+|..++.++...|      +.++||.+|++|+...|.++    .+|..|++||..+
T Consensus       403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g------~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~  476 (530)
T 2ooe_A          403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN------EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  476 (530)
T ss_dssp             HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT------CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred             HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC------CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999999988      89999999999999876443    5999999999999


Q ss_pred             CCcccC
Q 005817          669 SFSLLC  674 (676)
Q Consensus       669 G~~~~~  674 (676)
                      |+.+.+
T Consensus       477 G~~~~~  482 (530)
T 2ooe_A          477 GDLASI  482 (530)
T ss_dssp             SCHHHH
T ss_pred             CCHHHH
Confidence            997653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=100.00  E-value=2.3e-32  Score=308.41  Aligned_cols=408  Identities=11%  Similarity=0.123  Sum_probs=302.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Q 005817          143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN---VTAARALMQNG  218 (676)
Q Consensus       143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~---~~~Ar~~~~ra  218 (676)
                      ....|+++|..+|.|+..|..|++++.+.+ ...++.+|++++..+|.++.+|+.|+.+|. ..++   ++.|+.+|+||
T Consensus        51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~-~~~~~~~~~~v~~lfeRa  129 (679)
T 4e6h_A           51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEF-DKMEELDAAVIEPVLARC  129 (679)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TC--CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-hhCCcchHHHHHHHHHHH
Confidence            356889999999999999999999998876 478999999999999999999999999997 6778   99999999999


Q ss_pred             HHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817          219 LRVCP--TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME  296 (676)
Q Consensus       219 l~~~p--~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (676)
                      |..+|  .+.++|..|++|.....+.           .                                      .+  
T Consensus       130 l~~~~~~~sv~LW~~Yl~f~~~~~~~-----------~--------------------------------------~~--  158 (679)
T 4e6h_A          130 LSKELGNNDLSLWLSYITYVRKKNDI-----------I--------------------------------------TG--  158 (679)
T ss_dssp             TCSSSCCCCHHHHHHHHHHHHHHSCS-----------T--------------------------------------TT--
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHhccc-----------c--------------------------------------cc--
Confidence            99994  5789999999997653100           0                                      00  


Q ss_pred             hhhhhhhHHHhhhHHHHHHHHHHHhcCCC----chhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005817          297 SQKSVDLFREQGLRVLQTIYSGAVEALPS----SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR  372 (676)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~----~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~  372 (676)
                              .+...+.++.+|++|+..++.    +..+|..|+++....+...                           .
T Consensus       159 --------~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~---------------------------~  203 (679)
T 4e6h_A          159 --------GEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN---------------------------K  203 (679)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS---------------------------H
T ss_pred             --------cchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC---------------------------c
Confidence                    001345678999999986544    4567776655443322100                           0


Q ss_pred             HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHH
Q 005817          373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS---SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT  449 (676)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~---~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~  449 (676)
                      .+              -.+++++++.+|+++|. +|.   ..+|..|..|+.+.... ...    .........+..|+.
T Consensus       204 ~e--------------eq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~-~a~----~~~~e~~~~y~~Ar~  263 (679)
T 4e6h_A          204 FE--------------EQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQL-TAR----RHIGELSAQYMNARS  263 (679)
T ss_dssp             HH--------------HHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTT-THH----HHHHHHHHHHHHHHH
T ss_pred             HH--------------HHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcc-hHH----HHHHHhhHHHHHHHH
Confidence            00              03467899999999995 674   34999999998763110 000    000011234556677


Q ss_pred             HHHHH------HHc-CCC-------------------cHHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhccCCCh
Q 005817          450 VYEKA------EAM-GCL-------------------TEDIAHRYVTLYLQLG-------KLDEARKLAAKLCSGKLSDS  496 (676)
Q Consensus       450 iye~a------l~~-~p~-------------------~~~lw~~~~~l~~~~~-------~~~~A~~l~~~al~~~~P~~  496 (676)
                      +|...      +.. .|.                   ...+|..|+.++..++       ..+.++.+|++++ ..+|++
T Consensus       264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL-~~~p~~  342 (679)
T 4e6h_A          264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA-QHVCFA  342 (679)
T ss_dssp             HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH-HHTTTC
T ss_pred             HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH-HHcCCC
Confidence            66542      111 111                   1378999999998764       2345678999999 899999


Q ss_pred             HHHHHHHHHHHHHhccccCCCCChhchHHHH-HHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhh-
Q 005817          497 VQLWLLRISVEIRCVTRNSFSPSKADILSIF-ELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVA-  572 (676)
Q Consensus       497 ~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~-~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~-  572 (676)
                      +++|..|++++...+.          .++++ ++|++|+..+|.  +..||..++.+.+..+  +.++.+|++++..+. 
T Consensus       343 ~~lW~~ya~~~~~~~~----------~~~a~r~il~rAi~~~P~--s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~  410 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNT----------DSTVITKYLKLGQQCIPN--SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL  410 (679)
T ss_dssp             HHHHHHHHHHHHHHSC----------CTTHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            9999999999988764          56775 999999999985  4678999988776654  567788888876431 


Q ss_pred             ------hCCCCC---------CCcchHHHHHHHHHHhcCHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhccCCCCccc
Q 005817          573 ------KDGGGE---------SGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLYQNCIELENNLASVGDKDS  636 (676)
Q Consensus       573 ------~~~~~~---------~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~-~p~~~~l~~~~i~lE~~~~~~~~~~~  636 (676)
                            +..+..         ....++..|+.++.+.|+++.||++|++|+.. ++....+|..++.||...+.     +
T Consensus       411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~-----d  485 (679)
T 4e6h_A          411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK-----D  485 (679)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS-----C
T ss_pred             HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC-----C
Confidence                  111000         01123448999999999999999999999988 66667899999999988651     5


Q ss_pred             hHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcccCC
Q 005817          637 LVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLCF  675 (676)
Q Consensus       637 ~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~~~  675 (676)
                      .++||++|+++++.+|+++.+|+.|++||...|+.++|+
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR  524 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK  524 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence            899999999999999999999999999999999887653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.98  E-value=1.7e-30  Score=285.34  Aligned_cols=377  Identities=14%  Similarity=0.108  Sum_probs=273.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL  219 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral  219 (676)
                      +.+++.+|++++..||.              ...++++.+|+|||..+| ++++|..|+.++.+.+...+.+|.+|++|+
T Consensus        11 i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al   75 (493)
T 2uy1_A           11 LSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTL   75 (493)
T ss_dssp             -CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            56789999999999997              125689999999999999 889999999999865445677899999999


Q ss_pred             Hh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817          220 RV---CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME  296 (676)
Q Consensus       220 ~~---~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (676)
                      ..   +|.+..+|..|++|+.....                                                       
T Consensus        76 ~~vg~d~~s~~iW~~Yi~f~~~~~~-------------------------------------------------------  100 (493)
T 2uy1_A           76 GQFENYWDSYGLYKEYIEEEGKIED-------------------------------------------------------  100 (493)
T ss_dssp             HHSTTCTTCHHHHHHHHHHTSSCSS-------------------------------------------------------
T ss_pred             HHcCCCcccHHHHHHHHHHHHhchh-------------------------------------------------------
Confidence            87   56789999999999653100                                                       


Q ss_pred             hhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817          297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (676)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~  376 (676)
                              ..++.+.++.||++|+..++.+   ...++..|..|+.......+..++...                    
T Consensus       101 --------~~~~~~~vR~iy~rAL~~P~~~---~~~lw~~Y~~fE~~~~~~~~~~~~~~~--------------------  149 (493)
T 2uy1_A          101 --------EQTRIEKIRNGYMRALQTPMGS---LSELWKDFENFELELNKITGKKIVGDT--------------------  149 (493)
T ss_dssp             --------HHHHHHHHHHHHHHHHTSCCTT---HHHHHHHHHHHHHHHCHHHHHHHHHHH--------------------
T ss_pred             --------hhHHHHHHHHHHHHHHhChhhh---HHHHHHHHHHHHHHhccccHHHHHHHH--------------------
Confidence                    0125678999999999953332   234455556665322222233332221                    


Q ss_pred             ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHH
Q 005817          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA  454 (676)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~--~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~a  454 (676)
                                   .+.+..|+.+|+++....+.  ..+|..|++++.+.... ..+          .+..++++.+|++|
T Consensus       150 -------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~-~~~----------~~~~~Rv~~~ye~a  205 (493)
T 2uy1_A          150 -------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK-LGG----------RPHESRMHFIHNYI  205 (493)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC-CCH----------HHHHHHHHHHHHHH
T ss_pred             -------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc-Ccc----------hhhHHHHHHHHHHH
Confidence                         23466778888877765442  34999999998742110 100          12356788999999


Q ss_pred             HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHH
Q 005817          455 EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (676)
Q Consensus       455 l~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al  534 (676)
                      +...|.++++|+.|+.++.+.|+.+.|+.++++|+ +. |++..+|..|+.+...              +++.+.+.++.
T Consensus       206 l~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi-~~-P~~~~l~~~y~~~~e~--------------~~~~~~l~~~~  269 (493)
T 2uy1_A          206 LDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI-EM-SDGMFLSLYYGLVMDE--------------EAVYGDLKRKY  269 (493)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-CCSSHHHHHHHHHTTC--------------THHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hC-CCcHHHHHHHHhhcch--------------hHHHHHHHHHH
Confidence            99999999999999999999999999999999999 77 9999999988766311              11111111111


Q ss_pred             h--------hcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhc-CHHHHHHH
Q 005817          535 T--------KVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKD-GIQQAREM  603 (676)
Q Consensus       535 ~--------~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g-~~~~Ar~i  603 (676)
                      .        ..++.....+|..|+.+..+..  +.++.+|++| . . |..    ...++..++.++...+ +.++||+|
T Consensus       270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~-~~~----~~~v~i~~A~lE~~~~~d~~~ar~i  342 (493)
T 2uy1_A          270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-N-EGV----GPHVFIYCAFIEYYATGSRATPYNI  342 (493)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-T-SCC----CHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-C-CCC----ChHHHHHHHHHHHHHCCChHHHHHH
Confidence            1        1233445679999998764443  5678888887 2 2 211    2233445677777766 59999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcccC
Q 005817          604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLC  674 (676)
Q Consensus       604 y~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~~  674 (676)
                      |++++...|.++.+|..|+++|...+      +.++||.+|+++    +++..+|..|++||..+|+.+.+
T Consensus       343 fe~al~~~~~~~~~~~~yid~e~~~~------~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~  403 (493)
T 2uy1_A          343 FSSGLLKHPDSTLLKEEFFLFLLRIG------DEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELF  403 (493)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHH
Confidence            99999988888999999999999988      899999999998    34679999999999999998765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.97  E-value=5e-28  Score=269.98  Aligned_cols=412  Identities=15%  Similarity=0.236  Sum_probs=295.9

Q ss_pred             HHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHH
Q 005817           72 SEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAV  151 (676)
Q Consensus        72 ~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral  151 (676)
                      .++-+.|..||..|...|.+..-|+.|+++|...                                +....++.+|+||+
T Consensus        26 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--------------------------------~~~~~a~~~~~ral   73 (530)
T 2ooe_A           26 QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA--------------------------------KNYDKVEKLFQRCL   73 (530)
T ss_dssp             SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--------------------------------TCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--------------------------------CCHHHHHHHHHHHH
Confidence            3577899999999999999999999999998643                                13578899999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHc-c-Cch----HHHHHHHHHHh---CCCCHHHHHHHHHHHHH--------hCCCHHHHHHH
Q 005817          152 MRFKGDIELWFKYMEFCRQR-K-NGR----MKKVLAQVIRF---HPKVPGVWIYAAAWEFD--------HNLNVTAARAL  214 (676)
Q Consensus       152 ~~~p~~~~lW~~y~~~~~~~-~-~~~----~~~~~~ral~~---~P~~~~lW~~~a~~e~~--------~~~~~~~Ar~~  214 (676)
                      ..+| +.++|..|+.+.... | ...    ++++|++++..   +|.++.+|..|+.++..        .+|+++.||.+
T Consensus        74 ~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~  152 (530)
T 2ooe_A           74 MKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV  152 (530)
T ss_dssp             TTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred             hcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence            9999 799999999988654 3 333    45699999886   56788999999999853        15789999999


Q ss_pred             HHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCC
Q 005817          215 MQNGLRVCPTS--EELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQP  292 (676)
Q Consensus       215 ~~ral~~~p~~--~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (676)
                      |++++. .|.+  ..+|..|..|+...+. ..++. ++..                                        
T Consensus       153 y~~al~-~P~~~~~~~~~~~~~~e~~~~~-~~~~~-~l~~----------------------------------------  189 (530)
T 2ooe_A          153 YQRGCV-NPMINIEQLWRDYNKYEEGINI-HLAKK-MIED----------------------------------------  189 (530)
T ss_dssp             HHHHTT-SCCTTHHHHHHHHHHHHHHHCH-HHHHH-HHHT----------------------------------------
T ss_pred             HHHHHh-chhhhHHHHHHHHHHHHHhhch-hHHHH-HHHH----------------------------------------
Confidence            999999 6765  4899999999865422 11111 1100                                        


Q ss_pred             cchhhhhhhhhHHHhhhHHHHHHHHH------HHhc----CC-Cc-------hhHHHHHHHHHHHhccc-Cc----HHHH
Q 005817          293 ENMESQKSVDLFREQGLRVLQTIYSG------AVEA----LP-SS-------FNLRQRFFEIVEATNLA-QS----DDMH  349 (676)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~a~~iy~~------Al~~----~p-~~-------~~~~~~~~~~~~~fe~~-~~----~~~a  349 (676)
                                  ..+.+..|+.+|+.      +++.    +| +.       ...|..++.+...-... ..    ...+
T Consensus       190 ------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a  257 (530)
T 2ooe_A          190 ------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV  257 (530)
T ss_dssp             ------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred             ------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence                        01245556666655      4442    23 21       35666655433221100 01    1356


Q ss_pred             HHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHH-------HHHHHHHHHhh-ccCch-hHHHHHHHHH
Q 005817          350 DKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ-------KAIQVYEEALK-NVPSS-MIFDLYTKFL  420 (676)
Q Consensus       350 ~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~-------~A~~~ye~al~-~~~~~-~lw~~y~~~~  420 (676)
                      ..++++++..+|.++.+|..++..+......      ....++++       .|+.+|++|++ ..|.. .+|..|+.++
T Consensus       258 ~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~------~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~  331 (530)
T 2ooe_A          258 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL------LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  331 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhchh------hhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            6789999999999999999999987531000      00013333       78888888887 46653 4888888877


Q ss_pred             HHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHH
Q 005817          421 MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE-DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL  499 (676)
Q Consensus       421 ~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~-~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l  499 (676)
                      ..                  .|.+++|+.+|++++..+|.++ .+|+.|+.++.+.|++++|+.++++|+ +..|.+..+
T Consensus       332 ~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al-~~~~~~~~~  392 (530)
T 2ooe_A          332 ES------------------RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDARTRHHV  392 (530)
T ss_dssp             HH------------------TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCTTCCTHH
T ss_pred             Hh------------------cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH-hccCCchHH
Confidence            65                  3567888888888888877775 588888888888888888888888888 666766666


Q ss_pred             HHHHHHHHHH-hccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCC
Q 005817          500 WLLRISVEIR-CVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGE  578 (676)
Q Consensus       500 W~~~i~l~~~-~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~  578 (676)
                      |...+.++.. .|          +.++++++|++|++..|..  ..+|                                
T Consensus       393 ~~~~a~~~~~~~~----------~~~~A~~~~e~al~~~p~~--~~~~--------------------------------  428 (530)
T 2ooe_A          393 YVTAALMEYYCSK----------DKSVAFKIFELGLKKYGDI--PEYV--------------------------------  428 (530)
T ss_dssp             HHHHHHHHHHHTC----------CHHHHHHHHHHHHHHHTTC--HHHH--------------------------------
T ss_pred             HHHHHHHHHHHcC----------ChhHHHHHHHHHHHHCCCC--HHHH--------------------------------
Confidence            6555444322 23          4677777777777655421  2233                                


Q ss_pred             CCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          579 SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG----LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       579 ~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~----~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                            ..|+.++...|+.++||.+|++++..+|.+    ..+|..++.+|...|      +.+.+.+++.++++.+|
T Consensus       429 ------~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G------~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          429 ------LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG------DLASILKVEKRRFTAFR  494 (530)
T ss_dssp             ------HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS------CHHHHHHHHHHHHHHTH
T ss_pred             ------HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHCc
Confidence                  256666777899999999999999876544    349999999999988      89999999999999998

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.97  E-value=1.4e-29  Score=278.04  Aligned_cols=383  Identities=14%  Similarity=0.185  Sum_probs=268.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CchHHHHHHHHHHh---CCCCHHHHHHHHHHHHH---hCCCHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRF---HPKVPGVWIYAAAWEFD---HNLNVTAA  211 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~---~P~~~~lW~~~a~~e~~---~~~~~~~A  211 (676)
                      ..+++.||+||+...| ++++|..|++|+.+.+  ...++.+|++|+..   +|.++.+|..|+.|+..   .+++++.+
T Consensus        30 ~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v  108 (493)
T 2uy1_A           30 YRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI  108 (493)
T ss_dssp             HHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence            6788999999999999 9999999999999876  35689999999986   68899999999999631   24579999


Q ss_pred             HHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCC
Q 005817          212 RALMQNGLRVCPTS--EELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG  289 (676)
Q Consensus       212 r~~~~ral~~~p~~--~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (676)
                      |.+|+|||.. |..  ..+|..|..||..... ..+.+. +..                                     
T Consensus       109 R~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~-~~~~~~-~~~-------------------------------------  148 (493)
T 2uy1_A          109 RNGYMRALQT-PMGSLSELWKDFENFELELNK-ITGKKI-VGD-------------------------------------  148 (493)
T ss_dssp             HHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCH-HHHHHH-HHH-------------------------------------
T ss_pred             HHHHHHHHhC-hhhhHHHHHHHHHHHHHHhcc-ccHHHH-HHH-------------------------------------
Confidence            9999999994 542  6899999999986421 111110 000                                     


Q ss_pred             CCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHhcccCc----HHHHHHHHHHHHhcCCCCh
Q 005817          290 SQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPS-SFNLRQRFFEIVEATNLAQS----DDMHDKILSDMQRDFLVDP  364 (676)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~-~~~~~~~~~~~~~~fe~~~~----~~~a~~il~~~~~~~p~~~  364 (676)
                                     ....+..|+.+|+.+....+. +...|..++++.........    ...+..+|++++..+|..+
T Consensus       149 ---------------~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~  213 (493)
T 2uy1_A          149 ---------------TLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE  213 (493)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred             ---------------HhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH
Confidence                           012556788888888765543 45678777665432111111    2356778999999999999


Q ss_pred             hhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhh
Q 005817          365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY  443 (676)
Q Consensus       365 ~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~  443 (676)
                      .+|+.+|+.+..             .+++++|+.+|++|+.. |... +|..|+.+.+.                  ...
T Consensus       214 ~lW~~ya~~~~~-------------~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~------------------~~~  261 (493)
T 2uy1_A          214 EVYFFYSEYLIG-------------IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDE------------------EAV  261 (493)
T ss_dssp             HHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTC------------------THH
T ss_pred             HHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcch------------------hHH
Confidence            999999998865             46688999999999999 8655 88888776320                  000


Q ss_pred             HHHHHHHH---HH---HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCC
Q 005817          444 ISHLLTVY---EK---AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFS  517 (676)
Q Consensus       444 ~~~a~~iy---e~---al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~  517 (676)
                      .+++...+   +.   .....+....+|+.|+.++.+.++.+.|+.++++|. .. +.+..+|..++.++...+.     
T Consensus       262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~-~~~~~v~i~~A~lE~~~~~-----  334 (493)
T 2uy1_A          262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NE-GVGPHVFIYCAFIEYYATG-----  334 (493)
T ss_dssp             HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TS-CCCHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CC-CCChHHHHHHHHHHHHHCC-----
Confidence            11111111   00   000011134678888888888888888888888882 22 2356788888877776543     


Q ss_pred             CChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCH
Q 005817          518 PSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI  597 (676)
Q Consensus       518 p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~  597 (676)
                          +.++++++|+.|++..|..  ..+|.                                      .|++++...|+.
T Consensus       335 ----d~~~ar~ife~al~~~~~~--~~~~~--------------------------------------~yid~e~~~~~~  370 (493)
T 2uy1_A          335 ----SRATPYNIFSSGLLKHPDS--TLLKE--------------------------------------EFFLFLLRIGDE  370 (493)
T ss_dssp             ----CSHHHHHHHHHHHHHCTTC--HHHHH--------------------------------------HHHHHHHHHTCH
T ss_pred             ----ChHHHHHHHHHHHHHCCCC--HHHHH--------------------------------------HHHHHHHHcCCH
Confidence                4678888888887765421  22332                                      466667778899


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC----CCc-hHHHHHHHHHhhcCCc
Q 005817          598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD----QNT-SLWRDYYSTETKVSFS  671 (676)
Q Consensus       598 ~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~----~~~-~lW~~y~~fE~~~G~~  671 (676)
                      ++||.+|+++.    .+..+|..+++||...|      +.+.+|++|++++....    .++ .+-..|.+||..+|+.
T Consensus       371 ~~aR~l~er~~----k~~~lw~~~~~fE~~~G------~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l  439 (493)
T 2uy1_A          371 ENARALFKRLE----KTSRMWDSMIEYEFMVG------SMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRY  439 (493)
T ss_dssp             HHHHHHHHHSC----CBHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHH
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhH
Confidence            99999999983    46889999999999999      89999999999997542    122 3335556677777763

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.92  E-value=1.8e-21  Score=207.46  Aligned_cols=371  Identities=10%  Similarity=0.052  Sum_probs=302.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|...|++++...|++...|......+...+ .+.+...+++++..+|.++..|...+.... ..|+++.|...|+++
T Consensus        15 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a   93 (388)
T 1w3b_A           15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERGQLQEAIEHYRHA   93 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence            577889999999999999999999999888777 578899999999999999999999999886 678999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (676)
                      ++..|++...|...+......                                                           
T Consensus        94 l~~~p~~~~~~~~l~~~~~~~-----------------------------------------------------------  114 (388)
T 1w3b_A           94 LRLKPDFIDGYINLAAALVAA-----------------------------------------------------------  114 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred             HHcCcchHHHHHHHHHHHHHc-----------------------------------------------------------
Confidence            999999888777666543321                                                           


Q ss_pred             hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcccc
Q 005817          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS  378 (676)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~  378 (676)
                              ++++.|...|+++++..|++...+..+-.++...   +..+.+...+++++...|++..+|..++..+..  
T Consensus       115 --------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--  181 (388)
T 1w3b_A          115 --------GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL---GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA--  181 (388)
T ss_dssp             --------SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT---SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--
T ss_pred             --------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence                    2456789999999999999887777665555433   357889999999999999999999999988865  


Q ss_pred             CCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc
Q 005817          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (676)
Q Consensus       379 ~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~  457 (676)
                                 .++++.|...|+++++..|... .|.........                  .+.++.|...|++++..
T Consensus       182 -----------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------------~~~~~~A~~~~~~al~~  232 (388)
T 1w3b_A          182 -----------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE------------------ARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             -----------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT------------------TTCTTHHHHHHHHHHHH
T ss_pred             -----------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhh
Confidence                       5789999999999999877643 33322222221                  36678999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (676)
Q Consensus       458 ~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~  537 (676)
                      +|.++..|...+..+...|++++|...+++++ ...|+++..|...+......|          +.+++.+.|++++...
T Consensus       233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~  301 (388)
T 1w3b_A          233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEKG----------SVAEAEDCYNTALRLC  301 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHHS----------CHHHHHHHHHHHHHHC
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999 889999999999888887776          3788888888888765


Q ss_pred             ChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHH
Q 005817          538 SALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVL  617 (676)
Q Consensus       538 ~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l  617 (676)
                      |..  ...|.                                      ..+......|++++|...|++++...|.....
T Consensus       302 p~~--~~~~~--------------------------------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  341 (388)
T 1w3b_A          302 PTH--ADSLN--------------------------------------NLANIKREQGNIEEAVRLYRKALEVFPEFAAA  341 (388)
T ss_dssp             TTC--HHHHH--------------------------------------HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             ccc--HHHHH--------------------------------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence            532  11111                                      12233446789999999999999988888888


Q ss_pred             HHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcC
Q 005817          618 YQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVS  669 (676)
Q Consensus       618 ~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G  669 (676)
                      +...+.+....|      +.+.|..+|+++++..|+.+..|......-...|
T Consensus       342 ~~~l~~~~~~~g------~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          342 HSNLASVLQQQG------KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHTTT------CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcC------CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            888888877777      8899999999999999988888888776655554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.89  E-value=2.3e-19  Score=202.22  Aligned_cols=434  Identities=11%  Similarity=-0.043  Sum_probs=321.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC-------------------HHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV-------------------PGVWIYAAA  199 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~-------------------~~lW~~~a~  199 (676)
                      ...+..+|++++. .|.+...|...+..+.+.| .+.+.++|++   ..|..                   +..|...+.
T Consensus       133 ~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  208 (597)
T 2xpi_A          133 YARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ  208 (597)
T ss_dssp             HHHHHHHHHHTCG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHH
Confidence            5678889988864 4788999999999988887 5788889886   45554                   789999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccC
Q 005817          200 WEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMP  279 (676)
Q Consensus       200 ~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (676)
                      ... ..|+++.|+.+|+++++..|++...|..++.+..............+.... ..+.++   ..      ...++..
T Consensus       209 ~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~---~~------~~~~~~~  277 (597)
T 2xpi_A          209 VYT-NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYST-YSKEDA---AF------LRSLYML  277 (597)
T ss_dssp             HHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHH-HHGGGH---HH------HHHHHHT
T ss_pred             HHH-HcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcc-cccchH---HH------HHHHHHH
Confidence            886 789999999999999999999999988877643321111110000000000 000000   00      0000000


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhh-HHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHh
Q 005817          280 LDGEVENTDGSQPENMESQKSVDL-FREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR  358 (676)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~  358 (676)
                      +                    ... ...++++.|..+|+++++. |.+...|..+...+...   +..+.+..++++++.
T Consensus       278 ~--------------------~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~  333 (597)
T 2xpi_A          278 K--------------------LNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR---SRFIDVLAITTKILE  333 (597)
T ss_dssp             T--------------------SCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred             H--------------------HHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHH
Confidence            0                    001 1235788999999999887 66677888777766554   357899999999999


Q ss_pred             cCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCC
Q 005817          359 DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELP  437 (676)
Q Consensus       359 ~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~  437 (676)
                      ..|++..+|..++..+..             .+++++|..+|+++++..|... .|...+.....               
T Consensus       334 ~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------  385 (597)
T 2xpi_A          334 IDPYNLDVYPLHLASLHE-------------SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC---------------  385 (597)
T ss_dssp             HCTTCCTTHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH---------------
T ss_pred             cCcccHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH---------------
Confidence            999999999999988865             5789999999999998777543 55444443333               


Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCC
Q 005817          438 SHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFS  517 (676)
Q Consensus       438 ~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~  517 (676)
                         .|.++.|+.+|++++..+|.+...|...+..+.+.|++++|..++++++ ...|++...|...+......|      
T Consensus       386 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g------  455 (597)
T 2xpi_A          386 ---VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-RLFQGTHLPYLFLGMQHMQLG------  455 (597)
T ss_dssp             ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTTTCSHHHHHHHHHHHHHT------
T ss_pred             ---hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcC------
Confidence               4779999999999999999999999999999999999999999999999 889999999999998888776      


Q ss_pred             CChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCC--cchHHHHHHHHHH
Q 005817          518 PSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESG--FSLPSAIINLVIQ  593 (676)
Q Consensus       518 p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~y~~~~~~  593 (676)
                          +.+++.++|++++...|..  ...|...+..+...+  +.+...|++++... |..+..+.  .......+....+
T Consensus       456 ----~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          456 ----NILLANEYLQSSYALFQYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLV-KKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             ----CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-hccccchhhHHHHHHHHHHHHHH
Confidence                4899999999999876643  345665554444433  45566677766532 22111111  1223345666788


Q ss_pred             hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005817          594 KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS  663 (676)
Q Consensus       594 ~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~  663 (676)
                      .|++++|..+|++++...|.+...|...+.+....|      +.+.|..+|+++++..|+++..|.....
T Consensus       529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~l~~~p~~~~~~~~l~~  592 (597)
T 2xpi_A          529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK------IPGLAITHLHESLAISPNEIMASDLLKR  592 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC------CHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            999999999999999988889999999998888888      8999999999999999988888876543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.87  E-value=6.7e-19  Score=187.39  Aligned_cols=344  Identities=12%  Similarity=0.043  Sum_probs=278.4

Q ss_pred             Hcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005817          170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV  248 (676)
Q Consensus       170 ~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~  248 (676)
                      +.| .+.+...|.+++...|+++..+...+.... ..|+++.|...++++++.+|.+...|...+......         
T Consensus        11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~---------   80 (388)
T 1w3b_A           11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER---------   80 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC---------
Confidence            445 578899999999999999999999999886 688999999999999999999988888777654331         


Q ss_pred             HhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh
Q 005817          249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN  328 (676)
Q Consensus       249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~  328 (676)
                                                                                ++++.|...|+++++..|++..
T Consensus        81 ----------------------------------------------------------g~~~~A~~~~~~al~~~p~~~~  102 (388)
T 1w3b_A           81 ----------------------------------------------------------GQLQEAIEHYRHALRLKPDFID  102 (388)
T ss_dssp             ----------------------------------------------------------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ----------------------------------------------------------CCHHHHHHHHHHHHHcCcchHH
Confidence                                                                      2567889999999999999877


Q ss_pred             HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817          329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP  408 (676)
Q Consensus       329 ~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~  408 (676)
                      .+..+...+...   +..+.+...+++++...|++..+|..++..+..             .+++++|...|+++++..|
T Consensus       103 ~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~p  166 (388)
T 1w3b_A          103 GYINLAAALVAA---GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-------------LGRLEEAKACYLKAIETQP  166 (388)
T ss_dssp             HHHHHHHHHHHH---SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-------------TSCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHhCC
Confidence            777666655443   345788899999999999999999999988765             4788999999999998877


Q ss_pred             chh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005817          409 SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK  487 (676)
Q Consensus       409 ~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~  487 (676)
                      ... .|.........                  .|.++.|...|++++..+|.+...|...+..+...|++++|...+++
T Consensus       167 ~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  228 (388)
T 1w3b_A          167 NFAVAWSNLGCVFNA------------------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR  228 (388)
T ss_dssp             TCHHHHHHHHHHHHT------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            643 44333322221                  36788999999999999999999999999999999999999999999


Q ss_pred             HhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005817          488 LCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIA  567 (676)
Q Consensus       488 al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a  567 (676)
                      ++ ...|++...|...+......|          +.+++.+.|++++...|..  ...|                     
T Consensus       229 al-~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~p~~--~~~~---------------------  274 (388)
T 1w3b_A          229 AL-SLSPNHAVVHGNLACVYYEQG----------LIDLAIDTYRRAIELQPHF--PDAY---------------------  274 (388)
T ss_dssp             HH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTCSSC--HHHH---------------------
T ss_pred             HH-hhCcCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCC--HHHH---------------------
Confidence            99 788999889988888777766          3677777787777654422  1111                     


Q ss_pred             HHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHH
Q 005817          568 LISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA  647 (676)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~a  647 (676)
                                       ...+..+...|++++|...|++++...|.+...+...+.+....+      +.+.|..+|+++
T Consensus       275 -----------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~a  331 (388)
T 1w3b_A          275 -----------------CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG------NIEEAVRLYRKA  331 (388)
T ss_dssp             -----------------HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT------CHHHHHHHHHHH
T ss_pred             -----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC------CHHHHHHHHHHH
Confidence                             123334557899999999999999999999999988888887877      899999999999


Q ss_pred             HhhCCCCchHHHHHHHHHhhcCCcc
Q 005817          648 LATYDQNTSLWRDYYSTETKVSFSL  672 (676)
Q Consensus       648 l~~~~~~~~lW~~y~~fE~~~G~~~  672 (676)
                      ++..|++...|...+..-...|+.+
T Consensus       332 l~~~p~~~~~~~~l~~~~~~~g~~~  356 (388)
T 1w3b_A          332 LEVFPEFAAAHSNLASVLQQQGKLQ  356 (388)
T ss_dssp             TTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHH
Confidence            9999988899999888888888765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.87  E-value=1.3e-20  Score=194.50  Aligned_cols=243  Identities=12%  Similarity=0.189  Sum_probs=203.9

Q ss_pred             CCCCHHHHHHHHHHHHHcc----C-----chHHHHHHHHHHhCCCCHHHHHHHHHHHHH------hCCCH-------HHH
Q 005817          154 FKGDIELWFKYMEFCRQRK----N-----GRMKKVLAQVIRFHPKVPGVWIYAAAWEFD------HNLNV-------TAA  211 (676)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~----~-----~~~~~~~~ral~~~P~~~~lW~~~a~~e~~------~~~~~-------~~A  211 (676)
                      .|.+..+|..|++|+++..    .     .++..+|++++..+|.++.+|+.++.++..      ..|++       +.|
T Consensus         4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A   83 (308)
T 2ond_A            4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA   83 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence            4557899999999998752    1     357789999999999999999999999853      24776       899


Q ss_pred             HHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817          212 RALMQNGLR-VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS  290 (676)
Q Consensus       212 r~~~~ral~-~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (676)
                      +.+|++|++ ..|++..+|..|+.++...                                                   
T Consensus        84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~---------------------------------------------------  112 (308)
T 2ond_A           84 ANIYERAISTLLKKNMLLYFAYADYEESR---------------------------------------------------  112 (308)
T ss_dssp             HHHHHHHHTTTTTTCHHHHHHHHHHHHHT---------------------------------------------------
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHhc---------------------------------------------------
Confidence            999999999 6999999999999987642                                                   


Q ss_pred             CCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHH
Q 005817          291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN-LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW  369 (676)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~-~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~  369 (676)
                                      ++++.|+.+|++|++..|.+.. .|..+..++.+.+   ..+.+..+++++++..|.+..+|..
T Consensus       113 ----------------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~  173 (308)
T 2ond_A          113 ----------------MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE---GIKSGRMIFKKAREDARTRHHVYVT  173 (308)
T ss_dssp             ----------------TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH---CHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred             ----------------CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence                            2457899999999999998876 7887776665432   4678999999999999999999988


Q ss_pred             HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHH
Q 005817          370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLL  448 (676)
Q Consensus       370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~  448 (676)
                      .+..+...            .++++.|+.+|++|++..|... +|..|+.++..                  .|++++|+
T Consensus       174 ~a~~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~------------------~g~~~~A~  223 (308)
T 2ond_A          174 AALMEYYC------------SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH------------------LNEDNNTR  223 (308)
T ss_dssp             HHHHHHHT------------SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCCHHHHH
T ss_pred             HHHHHHHH------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------------CCCHHHHH
Confidence            77775421            3678999999999999988654 99999888765                  36789999


Q ss_pred             HHHHHHHHc---CC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817          449 TVYEKAEAM---GC-LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV  497 (676)
Q Consensus       449 ~iye~al~~---~p-~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~  497 (676)
                      .+|++|+..   +| ....+|..|+.++.+.|+.+.|..++++++ +.+|++.
T Consensus       224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~-~~~p~~~  275 (308)
T 2ond_A          224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF-TAFREEY  275 (308)
T ss_dssp             HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHTTTTT
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHccccc
Confidence            999999996   44 368899999999999999999999999999 8899754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.87  E-value=6e-19  Score=198.79  Aligned_cols=310  Identities=11%  Similarity=0.009  Sum_probs=237.4

Q ss_pred             hhhHHHHHHHHHHHhcCCCchhHHHHHHHHH-------------------------------H----HhcccCcHHHHHH
Q 005817          307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIV-------------------------------E----ATNLAQSDDMHDK  351 (676)
Q Consensus       307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~-------------------------------~----~fe~~~~~~~a~~  351 (676)
                      ++++.|..+|+++++..|++...+..+..++                               .    .+...+..+.+..
T Consensus       214 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  293 (597)
T 2xpi_A          214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED  293 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence            4677888888888888777666554432211                               0    0001123456777


Q ss_pred             HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcccc
Q 005817          352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEE  430 (676)
Q Consensus       352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d  430 (676)
                      ++++++.. |.+..+|..++..+..             .+++++|..+|+++++..|... .|...+.....        
T Consensus       294 ~~~~~~~~-~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------  351 (597)
T 2xpi_A          294 YLSSINGL-EKSSDLLLCKADTLFV-------------RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE--------  351 (597)
T ss_dssp             HHHTSTTG-GGCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH--------
T ss_pred             HHHHhhcC-CchHHHHHHHHHHHHH-------------hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH--------
Confidence            88887776 7888999999998876             5789999999999998777543 66655555443        


Q ss_pred             ccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 005817          431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC  510 (676)
Q Consensus       431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~  510 (676)
                                .|..+.|..+|++++..+|.++..|...+.++.+.|++++|+.++++++ ...|.+...|...+....+.
T Consensus       352 ----------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~  420 (597)
T 2xpi_A          352 ----------SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS-TMDPQFGPAWIGFAHSFAIE  420 (597)
T ss_dssp             ----------HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHH
T ss_pred             ----------hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHc
Confidence                      3678999999999999999999999999999999999999999999999 78999999999999998887


Q ss_pred             ccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHH
Q 005817          511 VTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAII  588 (676)
Q Consensus       511 ~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~  588 (676)
                      |          +.+++.++|++++...|..  ...|...+..+...+  +.+...|++++. ..|..     +......+
T Consensus       421 g----------~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-----~~~~~~l~  482 (597)
T 2xpi_A          421 G----------EHDQAISAYTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYA-LFQYD-----PLLLNELG  482 (597)
T ss_dssp             T----------CHHHHHHHHHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCCCC-----HHHHHHHH
T ss_pred             C----------CHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----hHHHHHHH
Confidence            6          4899999999999876643  234554444343333  455666776664 33332     23333566


Q ss_pred             HHHHHhcCHHHHHHHHHHHHcC------CCCC-HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHH
Q 005817          589 NLVIQKDGIQQAREMYKRFLAL------PRPG-LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDY  661 (676)
Q Consensus       589 ~~~~~~g~~~~Ar~iy~~al~~------~p~~-~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y  661 (676)
                      ..+.+.|++++|..+|++++..      .|.. ...|...+.+....|      +++.|..+|+++++..|+++.+|...
T Consensus       483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~~~~~~~l  556 (597)
T 2xpi_A          483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK------MYDAAIDALNQGLLLSTNDANVHTAI  556 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            7788899999999999999875      3443 568888888887888      89999999999999999999999999


Q ss_pred             HHHHhhcCCccc
Q 005817          662 YSTETKVSFSLL  673 (676)
Q Consensus       662 ~~fE~~~G~~~~  673 (676)
                      +..-...|+.+.
T Consensus       557 ~~~~~~~g~~~~  568 (597)
T 2xpi_A          557 ALVYLHKKIPGL  568 (597)
T ss_dssp             HHHHHHTTCHHH
T ss_pred             HHHHHHhCCHHH
Confidence            999988888654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=8.7e-20  Score=188.35  Aligned_cols=246  Identities=12%  Similarity=0.157  Sum_probs=200.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccc-hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817           91 LKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDF-SGVARILEIYRLAVMRFKGDIELWFKYMEFCR  169 (676)
Q Consensus        91 ~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~  169 (676)
                      +...|.+||+||.+.                         +....+. ...++|..+|++|+..+|.+.++|..|+.++.
T Consensus         7 ~~~~W~~yi~~E~~~-------------------------~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~   61 (308)
T 2ond_A            7 QVDMWKKYIQWEKSN-------------------------PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE   61 (308)
T ss_dssp             HHHHHHHHHHHHHTC-------------------------TTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-------------------------cccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            467899999999541                         0011111 23478999999999999999999999999986


Q ss_pred             H-------cc-C-------chHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 005817          170 Q-------RK-N-------GRMKKVLAQVIR-FHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE-LWVEY  232 (676)
Q Consensus       170 ~-------~~-~-------~~~~~~~~ral~-~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~-lW~~y  232 (676)
                      .       .| .       +.++.+|++|+. ..|+++.+|..++.++. ..|+++.|+.+|+++++..|.+.. +|..|
T Consensus        62 ~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  140 (308)
T 2ond_A           62 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQY  140 (308)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHH
T ss_pred             HhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHHH
Confidence            4       24 3       689999999999 79999999999999985 788999999999999999999876 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHH
Q 005817          233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL  312 (676)
Q Consensus       233 ~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (676)
                      +.++...                                                                   ++++.|
T Consensus       141 ~~~~~~~-------------------------------------------------------------------~~~~~A  153 (308)
T 2ond_A          141 MKFARRA-------------------------------------------------------------------EGIKSG  153 (308)
T ss_dssp             HHHHHHH-------------------------------------------------------------------HCHHHH
T ss_pred             HHHHHHh-------------------------------------------------------------------cCHHHH
Confidence            9887543                                                                   245778


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhH
Q 005817          313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ  392 (676)
Q Consensus       313 ~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~  392 (676)
                      +.+|++|++..|.+..+|.....+.  +...+..+.+..+++++++.+|+++.+|..++..+..             .++
T Consensus       154 ~~~~~~a~~~~p~~~~~~~~~a~~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-------------~g~  218 (308)
T 2ond_A          154 RMIFKKAREDARTRHHVYVTAALME--YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-------------LNE  218 (308)
T ss_dssp             HHHHHHHHTSTTCCTHHHHHHHHHH--HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------------TCC
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------CCC
Confidence            9999999999888877776543221  1112467889999999999999999999999998865             478


Q ss_pred             HHHHHHHHHHHhhcc--Cc---hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH
Q 005817          393 MQKAIQVYEEALKNV--PS---SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE  462 (676)
Q Consensus       393 ~~~A~~~ye~al~~~--~~---~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~  462 (676)
                      +++|+.+|++++...  +.   ..+|..|+.++..                  .|+.+.+..++++++...|.++
T Consensus       219 ~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~------------------~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          219 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN------------------IGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH------------------HSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHccccc
Confidence            999999999999962  32   2399999999876                  3678999999999999988754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.83  E-value=2e-17  Score=179.32  Aligned_cols=360  Identities=8%  Similarity=-0.050  Sum_probs=264.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005817          143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV  221 (676)
Q Consensus       143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~  221 (676)
                      ....+.+++...|.+...|...+..+...| +..+..+|++++..+|.++..|...+.... ..|+++.|...|+++++.
T Consensus        11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhc
Confidence            346777888899999999999999988887 578999999999999999999999999886 688999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhh
Q 005817          222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSV  301 (676)
Q Consensus       222 ~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (676)
                      .|++..+|..++......                                                              
T Consensus        90 ~p~~~~~~~~l~~~~~~~--------------------------------------------------------------  107 (450)
T 2y4t_A           90 KMDFTAARLQRGHLLLKQ--------------------------------------------------------------  107 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHT--------------------------------------------------------------
T ss_pred             CCCcHHHHHHHHHHHHHc--------------------------------------------------------------
Confidence            999888877766554321                                                              


Q ss_pred             hhHHHhhhHHHHHHHHHHHhcCCCch---hHHHHHHHH---------HHHhcccCcHHHHHHHHHHHHhcCCCChhhHHH
Q 005817          302 DLFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEI---------VEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW  369 (676)
Q Consensus       302 ~~~~~~~~~~a~~iy~~Al~~~p~~~---~~~~~~~~~---------~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~  369 (676)
                           ++++.|..+|+++++..|++.   ..+..+...         ...+...+..+.+...+++++...|+++.+|..
T Consensus       108 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  182 (450)
T 2y4t_A          108 -----GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL  182 (450)
T ss_dssp             -----TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             -----CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence                 256778999999999888876   666554332         111112245778999999999999999999999


Q ss_pred             HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHH
Q 005817          370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLL  448 (676)
Q Consensus       370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~  448 (676)
                      ++..+..             .+++++|...|+++++..|... .|.........                  .|+++.|.
T Consensus       183 l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~  231 (450)
T 2y4t_A          183 RAECFIK-------------EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ------------------LGDHELSL  231 (450)
T ss_dssp             HHHHHHH-------------TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH------------------TTCHHHHH
T ss_pred             HHHHHHH-------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------cCCHHHHH
Confidence            9998876             5778999999999998877543 55444433332                  36789999


Q ss_pred             HHHHHHHHcCCCcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhhccCCChHH----HHHHHHHHHHHhcc
Q 005817          449 TVYEKAEAMGCLTEDIAHRY------------VTLYLQLGKLDEARKLAAKLCSGKLSDSVQ----LWLLRISVEIRCVT  512 (676)
Q Consensus       449 ~iye~al~~~p~~~~lw~~~------------~~l~~~~~~~~~A~~l~~~al~~~~P~~~~----lW~~~i~l~~~~~~  512 (676)
                      ..|++++..+|.++..|..+            +..+...|++++|..++++++ ...|.++.    +|...+.+..+.| 
T Consensus       232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~~~~~l~~~~~~~g-  309 (450)
T 2y4t_A          232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM-KTEPSIAEYTVRSKERICHCFSKDE-  309 (450)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCCSSHHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHCC-
Confidence            99999999999998888777            888889999999999999999 78888754    5555566665554 


Q ss_pred             ccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHH
Q 005817          513 RNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVI  592 (676)
Q Consensus       513 ~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~  592 (676)
                               +.+++.+.|++++...|..  ..+|.                                      ..+....
T Consensus       310 ---------~~~~A~~~~~~a~~~~p~~--~~~~~--------------------------------------~l~~~~~  340 (450)
T 2y4t_A          310 ---------KPVEAIRVCSEVLQMEPDN--VNALK--------------------------------------DRAEAYL  340 (450)
T ss_dssp             ---------CHHHHHHHHHHHHHHCTTC--HHHHH--------------------------------------HHHHHHH
T ss_pred             ---------CHHHHHHHHHHHHHhCccc--HHHHH--------------------------------------HHHHHHH
Confidence                     3677777777776654422  11111                                      2233355


Q ss_pred             HhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh------------ccCCCCccchHHHHHHHHH-HHhhCCC
Q 005817          593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENN------------LASVGDKDSLVNARKLFES-ALATYDQ  653 (676)
Q Consensus       593 ~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~------------~~~~~~~~~~~~aR~lye~-al~~~~~  653 (676)
                      ..|++++|...|++++...|.+...+.....+...            +|.. ...+.+.+++.|.+ ++...|+
T Consensus       341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~-~~~~~~~~~~~y~~~~l~~~pd  413 (450)
T 2y4t_A          341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK-RNAKKQEIIKAYRKLALQWHPD  413 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS-TTCCTTHHHHHHHHHHHHSCGG
T ss_pred             HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC-ccCCHHHHHHHHHHHHHHhCCC
Confidence            68899999999999999988888777666543221            1111 12256889999997 8888773

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.83  E-value=4.5e-17  Score=180.67  Aligned_cols=408  Identities=9%  Similarity=0.020  Sum_probs=262.4

Q ss_pred             HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817          158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME  236 (676)
Q Consensus       158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e  236 (676)
                      ...|...+..+.+.| +..+...|++++..+|+++.+|...+.... ..|+++.|...|++++...|++..+|...+...
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI-STGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            345555555555555 567777777777777777777777777765 466777777777777777777777777777665


Q ss_pred             HHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHH
Q 005817          237 LTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIY  316 (676)
Q Consensus       237 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy  316 (676)
                      ...+....+...+ . ...   .+|..          ...++                      ...+..+....|..+|
T Consensus       104 ~~~g~~~~A~~~~-~-~~~---~~~~~----------~~~~~----------------------~~~~~~~~~~~a~~~~  146 (537)
T 3fp2_A          104 ESLGNFTDAMFDL-S-VLS---LNGDF----------DGASI----------------------EPMLERNLNKQAMKVL  146 (537)
T ss_dssp             HHHTCHHHHHHHH-H-HHC----------------------------------------------CHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHH-H-HHh---cCCCC----------ChHHH----------------------HHHHHHHHHHHHHHHH
Confidence            5443332222211 1 000   00000          00000                      0001112335567777


Q ss_pred             HHHHhcCCCc--------hh-----------------------------HHHHHHHHHH----Hhcc-cCcHHHHHHHHH
Q 005817          317 SGAVEALPSS--------FN-----------------------------LRQRFFEIVE----ATNL-AQSDDMHDKILS  354 (676)
Q Consensus       317 ~~Al~~~p~~--------~~-----------------------------~~~~~~~~~~----~fe~-~~~~~~a~~il~  354 (676)
                      +.++...|..        ..                             +...+..++.    .+.. .+....+..+++
T Consensus       147 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~  226 (537)
T 3fp2_A          147 NENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH  226 (537)
T ss_dssp             HHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            7776543211        11                             2211111110    0000 013567888999


Q ss_pred             HHHhcCCCChhhHHHHH-------HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCc
Q 005817          355 DMQRDFLVDPKYWDWLA-------RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPK  427 (676)
Q Consensus       355 ~~~~~~p~~~~~w~~la-------~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~  427 (676)
                      +++...|+++.+|..++       ..+..             .++++.|...|+++++..|....|.....   - +.  
T Consensus       227 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~l~~---~-~~--  287 (537)
T 3fp2_A          227 SLLSANTVDDPLRENAALALCYTGIFHFL-------------KNNLLDAQVLLQESINLHPTPNSYIFLAL---T-LA--  287 (537)
T ss_dssp             HHHC--CCCHHHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCCCHHHHHHHHH---H-TC--
T ss_pred             HHHHHCCCcchhhHHHHHHHHHHHHHHHh-------------cccHHHHHHHHHHHHhcCCCchHHHHHHH---H-HH--
Confidence            99999999987655444       44332             46789999999999998887333322211   1 11  


Q ss_pred             cccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817          428 KEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (676)
Q Consensus       428 ~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (676)
                                  ..|+++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|...+.+.
T Consensus       288 ------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~  354 (537)
T 3fp2_A          288 ------------DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ-SLNPENVYPYIQLACLL  354 (537)
T ss_dssp             ------------CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCSHHHHHHHHHH
T ss_pred             ------------HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Confidence                        13668999999999999999999999999999999999999999999999 88999999999999888


Q ss_pred             HHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchH-
Q 005817          508 IRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLP-  584 (676)
Q Consensus       508 ~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~-  584 (676)
                      ...|          +.+++.+.|++++...|..  ..+|..+...+...+  +.+...+++++... |..... ...+. 
T Consensus       355 ~~~g----------~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~-~~~~~~  420 (537)
T 3fp2_A          355 YKQG----------KFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLE-EVQEKI-HVGIGP  420 (537)
T ss_dssp             HHTT----------CHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCSSC-SSTTHH
T ss_pred             HHcC----------CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-Ccchhh-HHHHHH
Confidence            8776          4899999999999887654  234554444443333  44556667666533 333210 11111 


Q ss_pred             -HHHHHHHHHh----------cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC
Q 005817          585 -SAIINLVIQK----------DGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ  653 (676)
Q Consensus       585 -~~y~~~~~~~----------g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~  653 (676)
                       ...+......          |++++|...|++++...|.+...+...+.+....|      +.+.|..+|+++++..|+
T Consensus       421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME------KIDEAIELFEDSAILART  494 (537)
T ss_dssp             HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHhCCC
Confidence             1223445556          99999999999999999999999988888888888      899999999999999986


Q ss_pred             Cc
Q 005817          654 NT  655 (676)
Q Consensus       654 ~~  655 (676)
                      .+
T Consensus       495 ~~  496 (537)
T 3fp2_A          495 MD  496 (537)
T ss_dssp             CH
T ss_pred             cH
Confidence            54

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.4e-17  Score=183.45  Aligned_cols=432  Identities=10%  Similarity=-0.010  Sum_probs=289.1

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~  216 (676)
                      +....|...|++++...| +...|...+..+...| ...+...|++++..+|+++..|...+.... ..|+++.|...|+
T Consensus        20 g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~   97 (514)
T 2gw1_A           20 KKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE-GLGKFADAMFDLS   97 (514)
T ss_dssp             SCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence            346788999999999999 6889999998888877 578999999999999999999999999886 6889999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc--
Q 005817          217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN--  294 (676)
Q Consensus       217 ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  294 (676)
                      +++...|.+.......+........                        ..           .     ........+.  
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~-----------~-----~~~~l~~~~~~~  137 (514)
T 2gw1_A           98 VLSLNGDFNDASIEPMLERNLNKQA------------------------MS-----------K-----LKEKFGDIDTAT  137 (514)
T ss_dssp             HHHHSSSCCGGGTHHHHHHHHHHHH------------------------HH-----------H-----HTTC--------
T ss_pred             HHHhcCCCccchHHHHHHHHHHHHH------------------------HH-----------H-----HHHHHHHHHHHH
Confidence            9999999765544433322211100                        00           0     0000000000  


Q ss_pred             ---hhh--hhhhhhHH-Hhhh--HHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHh
Q 005817          295 ---MES--QKSVDLFR-EQGL--RVLQTIYSGAVEAL--------PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR  358 (676)
Q Consensus       295 ---~~~--~~~~~~~~-~~~~--~~a~~iy~~Al~~~--------p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~  358 (676)
                         ...  ........ ....  ......+-......        |++...+......+..+...+..+.+...+++++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  217 (514)
T 2gw1_A          138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR  217 (514)
T ss_dssp             -------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred             HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence               000  00000000 0000  00000000000000        22233332221111111113457788888888888


Q ss_pred             -----c--CCC-------ChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHh
Q 005817          359 -----D--FLV-------DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMI  424 (676)
Q Consensus       359 -----~--~p~-------~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~  424 (676)
                           .  .|+       +..+|..+|..+..             .++++.|...|+++++..|....|.........  
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~--  282 (514)
T 2gw1_A          218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL-------------KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD--  282 (514)
T ss_dssp             HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH-------------SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT--
T ss_pred             HhhhhhccCccccccChHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH--
Confidence                 4  444       45678888888765             478999999999999988872233322222221  


Q ss_pred             cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI  504 (676)
Q Consensus       425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i  504 (676)
                                      .|+++.|...|++++..+|.++..|...+.++...|++++|...+++++ ...|.+...|...+
T Consensus       283 ----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~  345 (514)
T 2gw1_A          283 ----------------RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK-ELDPENIFPYIQLA  345 (514)
T ss_dssp             ----------------SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH-HTCSSCSHHHHHHH
T ss_pred             ----------------CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhChhhHHHHHHHH
Confidence                            3567889999999999999999999999999999999999999999999 88999999999888


Q ss_pred             HHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCC-c
Q 005817          505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESG-F  581 (676)
Q Consensus       505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~-~  581 (676)
                      .+....|          +.+++.+.|++++...|..  ...|......+...+  +.+...+++++. ..|..+.... .
T Consensus       346 ~~~~~~~----------~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~  412 (514)
T 2gw1_A          346 CLAYREN----------KFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKALKQYDLAIE-LENKLDGIYVGI  412 (514)
T ss_dssp             HHTTTTT----------CHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHTSSSCSSCS
T ss_pred             HHHHHcC----------CHHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hhhccchHHHHH
Confidence            8776655          4899999999999876643  234444333333332  445566666665 3344321000 1


Q ss_pred             chHHHHHHHHHH---hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHH
Q 005817          582 SLPSAIINLVIQ---KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLW  658 (676)
Q Consensus       582 ~~~~~y~~~~~~---~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW  658 (676)
                      ......+.....   .|++++|...|++++...|.+...+...+.+....|      +.+.|...|+++++..|+++..|
T Consensus       413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~  486 (514)
T 2gw1_A          413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE------DIDEAITLFEESADLARTMEEKL  486 (514)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCSSHHHHH
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHhccccHHHH
Confidence            133345666777   899999999999999998999888888888888888      89999999999999999887777


Q ss_pred             HHHH
Q 005817          659 RDYY  662 (676)
Q Consensus       659 ~~y~  662 (676)
                      ....
T Consensus       487 ~~~~  490 (514)
T 2gw1_A          487 QAIT  490 (514)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.82  E-value=1.1e-16  Score=167.12  Aligned_cols=336  Identities=10%  Similarity=0.014  Sum_probs=250.0

Q ss_pred             CHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817          157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM  235 (676)
Q Consensus       157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~  235 (676)
                      +++.|...+......| +..+...|++++...|.++.+|...+.... ..|+++.|...|++++...|++..+|...+.+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            4677888888887777 578999999999999999999999999886 67899999999999999999988887766655


Q ss_pred             HHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHH
Q 005817          236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTI  315 (676)
Q Consensus       236 e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i  315 (676)
                      ....                                                                   ++++.|...
T Consensus        81 ~~~~-------------------------------------------------------------------~~~~~A~~~   93 (359)
T 3ieg_A           81 LLKQ-------------------------------------------------------------------GKLDEAEDD   93 (359)
T ss_dssp             HHHH-------------------------------------------------------------------TCHHHHHHH
T ss_pred             HHHc-------------------------------------------------------------------CChHHHHHH
Confidence            4321                                                                   256788999


Q ss_pred             HHHHHhcCC---CchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhH
Q 005817          316 YSGAVEALP---SSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ  392 (676)
Q Consensus       316 y~~Al~~~p---~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~  392 (676)
                      |+++++..|   ++...+..+..+..                         ...+...|..+..             .++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~-------------~~~  135 (359)
T 3ieg_A           94 FKKVLKSNPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFD-------------GAD  135 (359)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH-------------TTC
T ss_pred             HHHHHhcCCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH-------------ccC
Confidence            999999988   66555543321110                         0113344555543             477


Q ss_pred             HHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 005817          393 MQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTL  471 (676)
Q Consensus       393 ~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l  471 (676)
                      +++|...|+++++..|... .|.........                  .|+++.|...|++++..+|.++..|...+..
T Consensus       136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  197 (359)
T 3ieg_A          136 YTAAITFLDKILEVCVWDAELRELRAECFIK------------------EGEPRKAISDLKAASKLKSDNTEAFYKISTL  197 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            8999999999999887644 44433333332                  3678999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHH------------HHHhccccCCCCChhchHHHHHHHHHHHhhcCh
Q 005817          472 YLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV------------EIRCVTRNSFSPSKADILSIFELLKCILTKVSA  539 (676)
Q Consensus       472 ~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l------------~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~  539 (676)
                      +...|++++|...+++++ ...|++...|..+..+            ....+          +.+++.+.|++++...|.
T Consensus       198 ~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~~~~~~~~  266 (359)
T 3ieg_A          198 YYQLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG----------RYTDATSKYESVMKTEPS  266 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCCS
T ss_pred             HHHcCCHHHHHHHHHHHH-hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcCCC
Confidence            999999999999999999 8899988877655322            22222          345555555555554443


Q ss_pred             hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHH
Q 005817          540 LESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQ  619 (676)
Q Consensus       540 ~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~  619 (676)
                      ..  .+|..                                  .....+......|++++|...|++++...|.+...+.
T Consensus       267 ~~--~~~~~----------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  310 (359)
T 3ieg_A          267 VA--EYTVR----------------------------------SKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK  310 (359)
T ss_dssp             SH--HHHHH----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ch--HHHHH----------------------------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence            21  11100                                  0012334456788999999999999988888888888


Q ss_pred             HHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcC
Q 005817          620 NCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVS  669 (676)
Q Consensus       620 ~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G  669 (676)
                      ..+.+....+      +.+.|...|+++++..|+++.+|..........+
T Consensus       311 ~~~~~~~~~g------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          311 DRAEAYLIEE------MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcC------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            8888877777      8899999999999999988888888777665543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.81  E-value=1.3e-16  Score=176.91  Aligned_cols=417  Identities=12%  Similarity=0.024  Sum_probs=269.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|...|++++...|++...|...+..+...| +..+...|++++..+|+++..|...+.... ..|+++.|...|+ +
T Consensus        41 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~-~  118 (537)
T 3fp2_A           41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE-SLGNFTDAMFDLS-V  118 (537)
T ss_dssp             CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HcCCHHHHHHHHH-H
Confidence            456889999999999999999999999988887 588999999999999999999999999986 6789999999995 9


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccccc---------hhHHhhhhhccccccCCCCCCCCCC
Q 005817          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV-RDHRD---------ADEKRWINENKGLFMPLDGEVENTD  288 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  288 (676)
                      +...|+....|....--.......+..-...++....... ..+..         .......       ..+.... ..+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~  190 (537)
T 3fp2_A          119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV-------SSVNTSS-NYD  190 (537)
T ss_dssp             HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH-------HTSCCCC-SSC
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH-------HHHhhcc-ccc
Confidence            9999986655533211111111111111111111000000 00000         0000000       0000000 000


Q ss_pred             CCCCcchhhhhhh--------hhH--HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----hcccCcHHHHHHHHH
Q 005817          289 GSQPENMESQKSV--------DLF--REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEA----TNLAQSDDMHDKILS  354 (676)
Q Consensus       289 ~~~~~~~~~~~~~--------~~~--~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~----fe~~~~~~~a~~il~  354 (676)
                      .   ....+....        ..+  ..+.++.|..+|+++++..|++...+..+...+..    +...+..+.+...++
T Consensus       191 ~---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  267 (537)
T 3fp2_A          191 T---AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ  267 (537)
T ss_dssp             S---SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            0   000000000        000  01367899999999999999987665544333222    112246788999999


Q ss_pred             HHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccC
Q 005817          355 DMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRD  433 (676)
Q Consensus       355 ~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~  433 (676)
                      +++...|+ +.+|..++..+..             .++++.|...|+++++..|... .|.........           
T Consensus       268 ~~~~~~~~-~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------  322 (537)
T 3fp2_A          268 ESINLHPT-PNSYIFLALTLAD-------------KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-----------  322 (537)
T ss_dssp             HHHHHCCC-HHHHHHHHHHTCC-------------SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------
T ss_pred             HHHhcCCC-chHHHHHHHHHHH-------------hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-----------
Confidence            99999999 8899999998865             4778999999999999887643 55444433332           


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccc
Q 005817          434 SELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR  513 (676)
Q Consensus       434 ~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~  513 (676)
                             .|+++.|...|++++..+|.++..|...+..+...|++++|..++++++ ...|.+..+|..++.+....|  
T Consensus       323 -------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g--  392 (537)
T 3fp2_A          323 -------LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK-LKFPTLPEVPTFFAEILTDRG--  392 (537)
T ss_dssp             -------TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTT--
T ss_pred             -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhC--
Confidence                   3678999999999999999999999999999999999999999999999 889999999999998888776  


Q ss_pred             cCCCCChhchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHh------------hhHHHHHHHHHHHHhhhhCCCC
Q 005817          514 NSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMN------------QKHYFDKLVEIALISVAKDGGG  577 (676)
Q Consensus       514 ~~~~p~~~~~~~~~~~f~~Al~~~~~~~----~~~lW~~~l~~~~~------------~~~~~~~~~~~a~~~~~~~~~~  577 (676)
                              +.+++.+.|++++...|...    ....+......+..            ..+.+...+++++. ..|..  
T Consensus       393 --------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~p~~--  461 (537)
T 3fp2_A          393 --------DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE-LDPRS--  461 (537)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH-HCTTC--
T ss_pred             --------CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH-hCCCC--
Confidence                    47999999999998654321    11111111111211            11334455666554 33433  


Q ss_pred             CCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHH
Q 005817          578 ESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLY  618 (676)
Q Consensus       578 ~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~  618 (676)
                         .......+......|++++|...|++++...|......
T Consensus       462 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  499 (537)
T 3fp2_A          462 ---EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL  499 (537)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred             ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence               23333556678889999999999999999887776543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.81  E-value=1.9e-16  Score=171.56  Aligned_cols=310  Identities=11%  Similarity=0.030  Sum_probs=249.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|..+|++++...|.+...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|..+|+++
T Consensus        42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~  120 (450)
T 2y4t_A           42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKV  120 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            578899999999999999999999999988887 578999999999999999999999999886 688999999999999


Q ss_pred             HHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcch
Q 005817          219 LRVCPTSE---ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM  295 (676)
Q Consensus       219 l~~~p~~~---~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (676)
                      +...|.+.   ..|..++...........+                                                  
T Consensus       121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--------------------------------------------------  150 (450)
T 2y4t_A          121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQA--------------------------------------------------  150 (450)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
T ss_pred             HhcCCCChhhHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence            99999988   8888877664332111000                                                  


Q ss_pred             hhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhc
Q 005817          296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKM  375 (676)
Q Consensus       296 ~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~  375 (676)
                           ...+..++++.|..+|+++++..|.+...+..+..++...+   ..+.+...+++++...|+++.+|..++..+.
T Consensus       151 -----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  222 (450)
T 2y4t_A          151 -----LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKNDNTEAFYKISTLYY  222 (450)
T ss_dssp             -----HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             -----HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                 01112357789999999999999998888877777665543   5678999999999999999999999999887


Q ss_pred             cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHH--HHhcCccccccCCCCChhhhhhHHHHHHHHH
Q 005817          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM--DMIAPKKEETRDSELPSHVEHYISHLLTVYE  452 (676)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye  452 (676)
                      .             .+++++|...|+++++..|... .|..+.....  ..... . .      .....|.++.|...|+
T Consensus       223 ~-------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~-~------~~~~~g~~~~A~~~~~  281 (450)
T 2y4t_A          223 Q-------------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES-A-E------ELIRDGRYTDATSKYE  281 (450)
T ss_dssp             H-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH-H-H------HHHHHTCHHHHHHHHH
T ss_pred             H-------------cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH-H-H------HHHHcCCHHHHHHHHH
Confidence            6             5789999999999998888654 4443311100  00000 0 0      0012477999999999


Q ss_pred             HHHHcCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHH
Q 005817          453 KAEAMGCLTED----IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE  528 (676)
Q Consensus       453 ~al~~~p~~~~----lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~  528 (676)
                      +++...|.++.    .|...+.++.+.|++++|...+++++ ...|++...|..++......+          +.+++.+
T Consensus       282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~~~~~----------~~~~A~~  350 (450)
T 2y4t_A          282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL-QMEPDNVNALKDRAEAYLIEE----------MYDEAIQ  350 (450)
T ss_dssp             HHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHhc----------CHHHHHH
Confidence            99999998854    67888999999999999999999999 889999999999999888776          4899999


Q ss_pred             HHHHHHhhcChh
Q 005817          529 LLKCILTKVSAL  540 (676)
Q Consensus       529 ~f~~Al~~~~~~  540 (676)
                      .|++++...|..
T Consensus       351 ~~~~al~~~p~~  362 (450)
T 2y4t_A          351 DYETAQEHNEND  362 (450)
T ss_dssp             HHHHHHTTSSSC
T ss_pred             HHHHHHHhCcch
Confidence            999999976654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.3e-16  Score=175.51  Aligned_cols=404  Identities=8%  Similarity=-0.023  Sum_probs=253.8

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHH-
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM-  215 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~-  215 (676)
                      +....|...|++++...|++...|...+..+...| ...+...|++++...|.+.......+..... ......+...+ 
T Consensus        53 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~  131 (514)
T 2gw1_A           53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN-KQAMSKLKEKFG  131 (514)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHH-HHHHHHHTTC--
T ss_pred             hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHH-HHHHHHHHHHHH
Confidence            34577899999999999999999999999998887 5789999999999999776554444433321 11122222211 


Q ss_pred             --HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817          216 --QNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE  293 (676)
Q Consensus       216 --~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (676)
                        +++... |.+..........               ...    +..|.........       ..+.............
T Consensus       132 ~~~~~~~~-~~~~~~~~~~~~~---------------~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  184 (514)
T 2gw1_A          132 DIDTATAT-PTELSTQPAKERK---------------DKQ----ENLPSVTSMASFF-------GIFKPELTFANYDESN  184 (514)
T ss_dssp             ---------------------------------------------CCCCHHHHHHHH-------TTSCCCCCCSSCCSSC
T ss_pred             HHHHHHHh-hhhccCChhhHHH---------------hhc----cCCchhHHHHHHH-------hhcCHHHHHHHhcCCc
Confidence              111111 1111000000000               000    0000000000000       0000000000000000


Q ss_pred             -chhh-hhhhhhHH---HhhhHHHHHHHHHHHh-----c--CCCc-------hhHHHHHHHHHHHhcccCcHHHHHHHHH
Q 005817          294 -NMES-QKSVDLFR---EQGLRVLQTIYSGAVE-----A--LPSS-------FNLRQRFFEIVEATNLAQSDDMHDKILS  354 (676)
Q Consensus       294 -~~~~-~~~~~~~~---~~~~~~a~~iy~~Al~-----~--~p~~-------~~~~~~~~~~~~~fe~~~~~~~a~~il~  354 (676)
                       ...+ ......+.   .++++.|..+|+++++     .  .|++       ...+..+...+..   .+..+.+...++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~  261 (514)
T 2gw1_A          185 EADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL---KNDPLGAHEDIK  261 (514)
T ss_dssp             HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH---SSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH---CCCHHHHHHHHH
Confidence             0001 11111111   4678999999999998     4  3433       3333333333322   246789999999


Q ss_pred             HHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccC
Q 005817          355 DMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRD  433 (676)
Q Consensus       355 ~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~  433 (676)
                      +++...|+ ..+|..++..+..             .++++.|...|+++++..|... .|.........           
T Consensus       262 ~~l~~~~~-~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------  316 (514)
T 2gw1_A          262 KAIELFPR-VNSYIYMALIMAD-------------RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI-----------  316 (514)
T ss_dssp             HHHHHCCC-HHHHHHHHHHHHT-------------SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH-----------
T ss_pred             HHHhhCcc-HHHHHHHHHHHHH-------------CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH-----------
Confidence            99999999 8899999998865             4667889999999999877544 44443333332           


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccc
Q 005817          434 SELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR  513 (676)
Q Consensus       434 ~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~  513 (676)
                             .|+++.|...|++++..+|.++..|...+..+...|++++|..++++++ ...|.+...|...+.+....|  
T Consensus       317 -------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~--  386 (514)
T 2gw1_A          317 -------LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK-RKFPEAPEVPNFFAEILTDKN--  386 (514)
T ss_dssp             -------TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH-HHSTTCSHHHHHHHHHHHHTT--
T ss_pred             -------hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHcccCHHHHHHHHHHHHHCC--
Confidence                   3668899999999999999999999999999999999999999999999 889999999999998888776  


Q ss_pred             cCCCCChhchHHHHHHHHHHHhhcChhhh----HHHHHHHHHHHHh---hh--HHHHHHHHHHHHhhhhCCCCCCCcchH
Q 005817          514 NSFSPSKADILSIFELLKCILTKVSALES----ESLWLMALKFFMN---QK--HYFDKLVEIALISVAKDGGGESGFSLP  584 (676)
Q Consensus       514 ~~~~p~~~~~~~~~~~f~~Al~~~~~~~~----~~lW~~~l~~~~~---~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~  584 (676)
                              +.+++.+.|++++...|....    ...|......+..   .+  +.+...+++++. ..|..     ....
T Consensus       387 --------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~-----~~~~  452 (514)
T 2gw1_A          387 --------DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK-LDPRS-----EQAK  452 (514)
T ss_dssp             --------CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCTTC-----HHHH
T ss_pred             --------CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH-hCccc-----HHHH
Confidence                    479999999999986543311    1134443333433   33  344555666654 33332     2333


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005817          585 SAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNC  621 (676)
Q Consensus       585 ~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~  621 (676)
                      ...+......|++++|...|++++...|.+...+...
T Consensus       453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            3456678889999999999999999988877766544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.80  E-value=4.3e-16  Score=162.50  Aligned_cols=311  Identities=12%  Similarity=0.023  Sum_probs=249.6

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....|...|++++...|.+...|...+..+...| +..+...|++++...|.++..|...+.... ..|+++.|...|++
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~   96 (359)
T 3ieg_A           18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKK   96 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHH
Confidence            3678899999999999999999999999988877 578999999999999999999999999886 67899999999999


Q ss_pred             HHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc
Q 005817          218 GLRVCP---TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN  294 (676)
Q Consensus       218 al~~~p---~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (676)
                      ++...|   ++..+|..+..+.........+.                                                
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------------------------------------------------  128 (359)
T 3ieg_A           97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQAL------------------------------------------------  128 (359)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
T ss_pred             HHhcCCcccChHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
Confidence            999999   88888887776543221111000                                                


Q ss_pred             hhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 005817          295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK  374 (676)
Q Consensus       295 ~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~  374 (676)
                             ..+..++++.|..+|+++++..|.+...+..+..++...   +..+.+...+++++...|+++.+|..+|..+
T Consensus       129 -------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  198 (359)
T 3ieg_A          129 -------DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE---GEPRKAISDLKAASKLKSDNTEAFYKISTLY  198 (359)
T ss_dssp             -------HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred             -------HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                   011124678999999999999999888877766665543   3578899999999999999999999999998


Q ss_pred             ccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHH--HhcCccccccCCCCChhhhhhHHHHHHHH
Q 005817          375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMD--MIAPKKEETRDSELPSHVEHYISHLLTVY  451 (676)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~a~~iy  451 (676)
                      ..             .++++.|...|+++++..|... .|..|.....-  .... . .      .....|+++.|...|
T Consensus       199 ~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-a-~------~~~~~~~~~~A~~~~  257 (359)
T 3ieg_A          199 YQ-------------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES-A-E------ELIRDGRYTDATSKY  257 (359)
T ss_dssp             HH-------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH-H-H------HHHHTTCHHHHHHHH
T ss_pred             HH-------------cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH-H-H------HHHHcCCHHHHHHHH
Confidence            76             5789999999999999888654 45444322100  0000 0 0      001247799999999


Q ss_pred             HHHHHcCCCcHHH----HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHH
Q 005817          452 EKAEAMGCLTEDI----AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIF  527 (676)
Q Consensus       452 e~al~~~p~~~~l----w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~  527 (676)
                      ++++...|.++..    +...+..+...|++++|...+++++ ...|+++..|..++.+....|          +.+++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g----------~~~~A~  326 (359)
T 3ieg_A          258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL-QMEPDNVNALKDRAEAYLIEE----------MYDEAI  326 (359)
T ss_dssp             HHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHH
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcC----------CHHHHH
Confidence            9999999998754    5567889999999999999999999 889999999999999988876          489999


Q ss_pred             HHHHHHHhhcChh
Q 005817          528 ELLKCILTKVSAL  540 (676)
Q Consensus       528 ~~f~~Al~~~~~~  540 (676)
                      +.|+++++..|..
T Consensus       327 ~~~~~a~~~~p~~  339 (359)
T 3ieg_A          327 QDYEAAQEHNEND  339 (359)
T ss_dssp             HHHHHHHTTCTTC
T ss_pred             HHHHHHHhcCCCC
Confidence            9999999977653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.74  E-value=1.5e-15  Score=156.53  Aligned_cols=267  Identities=9%  Similarity=0.005  Sum_probs=225.0

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQ  216 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~-~~~~Ar~~~~  216 (676)
                      ....+..+|++++...|.+...+..++..+...| ...+...+++++..+|.++..|...+.... ..| +.+.|...|+
T Consensus        37 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~  115 (330)
T 3hym_B           37 DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL-MVGHKNEHARRYLS  115 (330)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH-HSCSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhhhhHHHHHHHHH
Confidence            3677889999999999999999998888887777 578999999999999999999999999886 577 9999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817          217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME  296 (676)
Q Consensus       217 ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (676)
                      +++...|.+..+|..++.+....                                                         
T Consensus       116 ~a~~~~~~~~~~~~~l~~~~~~~---------------------------------------------------------  138 (330)
T 3hym_B          116 KATTLEKTYGPAWIAYGHSFAVE---------------------------------------------------------  138 (330)
T ss_dssp             HHHTTCTTCTHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred             HHHHhCCccHHHHHHHHHHHHHc---------------------------------------------------------
Confidence            99999999988888777654321                                                         


Q ss_pred             hhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817          297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (676)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~  376 (676)
                                ++++.|...|+++++..|++...+..+..++...   +..+.+...+++++...|+++.+|..++..+..
T Consensus       139 ----------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  205 (330)
T 3hym_B          139 ----------SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT---NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ  205 (330)
T ss_dssp             ----------TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             ----------cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence                      2567899999999999998877766655554432   467899999999999999999999999998876


Q ss_pred             ccCCCCCCCcCcchhHHHHHHHHHHHHhhccC---------c-hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHH
Q 005817          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---------S-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISH  446 (676)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~---------~-~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  446 (676)
                                   .+++++|...|+++++..+         . ...|.........                  .|.++.
T Consensus       206 -------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~g~~~~  254 (330)
T 3hym_B          206 -------------NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK------------------LKKYAE  254 (330)
T ss_dssp             -------------TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH------------------TTCHHH
T ss_pred             -------------cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH------------------hcCHHH
Confidence                         5789999999999998652         2 1244444333332                  477899


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817          447 LLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (676)
Q Consensus       447 a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (676)
                      |...|++++..+|.++..|...+..+...|++++|...+++++ +..|++...|...+....
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL-GLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT-TTCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH-ccCCCchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999 899999999998887653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.71  E-value=5.3e-15  Score=161.34  Aligned_cols=370  Identities=13%  Similarity=0.018  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMR---------FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--------PKVPGVWIYAAAWE  201 (676)
Q Consensus       140 ~~~~~~iyeral~~---------~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--------P~~~~lW~~~a~~e  201 (676)
                      ...|...|++|+..         .|.....|..++......| ...+...|++++.+.        +..+.++...+...
T Consensus        67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~  146 (472)
T 4g1t_A           67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR  146 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHH
Confidence            45677788888765         6777788888888887777 578899999999863        34556655443222


Q ss_pred             HH-hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCC
Q 005817          202 FD-HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL  280 (676)
Q Consensus       202 ~~-~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (676)
                      +. ..++++.|...|++++...|+++.+|..+.........        ++                             
T Consensus       147 ~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~--------~~-----------------------------  189 (472)
T 4g1t_A          147 LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN--------WP-----------------------------  189 (472)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--------SC-----------------------------
T ss_pred             HHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--------ch-----------------------------
Confidence            21 34679999999999999999999988877655332210        00                             


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc-ccCcHHHHHHHHHHHHhc
Q 005817          281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN-LAQSDDMHDKILSDMQRD  359 (676)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe-~~~~~~~a~~il~~~~~~  359 (676)
                                                 ..+.|...|++|++..|++...+..+...+.... ..+..+.+...+++++..
T Consensus       190 ---------------------------~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~  242 (472)
T 4g1t_A          190 ---------------------------PSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK  242 (472)
T ss_dssp             ---------------------------CCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred             ---------------------------HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence                                       1234577889999999988766655443333322 123456789999999999


Q ss_pred             CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHH----HHHHHHHHHhcCccccccCC
Q 005817          360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFD----LYTKFLMDMIAPKKEETRDS  434 (676)
Q Consensus       360 ~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~----~y~~~~~~~~~~~~~d~~~~  434 (676)
                      .|+++.+|..+|..+..             .+++++|...|+++++..|... .+.    .|..............   .
T Consensus       243 ~~~~~~~~~~lg~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~---~  306 (472)
T 4g1t_A          243 APGVTDVLRSAAKFYRR-------------KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG---M  306 (472)
T ss_dssp             CSSCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             CccHHHHHHHHHHHHHH-------------cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHH---H
Confidence            99999999999998876             5789999999999999888654 222    1211111100000000   0


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH---HHHHHHHHHHHHhc
Q 005817          435 ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV---QLWLLRISVEIRCV  511 (676)
Q Consensus       435 ~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~---~lW~~~i~l~~~~~  511 (676)
                      .......+..+.|...|++++..+|.....|...+..+...|++++|...|++++ ...|++.   .++..+..+.....
T Consensus       307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL-~~~~~~~~~~~~~~~~~~~~~~~~  385 (472)
T 4g1t_A          307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF-SKELTPVAKQLLHLRYGNFQLYQM  385 (472)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHC
Confidence            0000123457789999999999999999999999999999999999999999999 6667653   34455554443222


Q ss_pred             cccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHH
Q 005817          512 TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLV  591 (676)
Q Consensus       512 ~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~  591 (676)
                      .         +.+++.+.|.+|+...|...   .+..       ....+++++++++. ..|..     +......+...
T Consensus       386 ~---------~~~~Ai~~y~kal~i~~~~~---~~~~-------~~~~l~~~~~~~l~-~~p~~-----~~~~~~LG~~~  440 (472)
T 4g1t_A          386 K---------CEDKAIHHFIEGVKINQKSR---EKEK-------MKDKLQKIAKMRLS-KNGAD-----SEALHVLAFLQ  440 (472)
T ss_dssp             S---------CHHHHHHHHHHHHHSCCCCH---HHHH-------HHHHHHHHHHHHHH-HCC-C-----TTHHHHHHHHH
T ss_pred             C---------CHHHHHHHHHHHHhcCcccH---HHHH-------HHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHH
Confidence            1         47888889999998655321   1111       11223334444443 33433     12222344445


Q ss_pred             HHhcCHHHHHHHHHHHHcCCCCCH
Q 005817          592 IQKDGIQQAREMYKRFLALPRPGL  615 (676)
Q Consensus       592 ~~~g~~~~Ar~iy~~al~~~p~~~  615 (676)
                      ...|++++|.+.|++|+...|..+
T Consensus       441 ~~~g~~~~A~~~y~kALe~~~~~p  464 (472)
T 4g1t_A          441 ELNEKMQQADEDSERGLESGSLIP  464 (472)
T ss_dssp             HHHHHCC-----------------
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCCC
Confidence            567888888888888887654443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.71  E-value=3.7e-15  Score=153.68  Aligned_cols=279  Identities=8%  Similarity=-0.080  Sum_probs=228.7

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH
Q 005817          149 LAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE  227 (676)
Q Consensus       149 ral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~  227 (676)
                      ..+...|.+..++...+..+...| +..+..+|++++...|.++..+..++...+ ..|+++.|..++++++...|.+..
T Consensus        13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~   91 (330)
T 3hym_B           13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLV-ELNKANELFYLSHKLVDLYPSNPV   91 (330)
T ss_dssp             -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHH
Confidence            566678889999999999888777 588999999999999999999988888776 578999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHh
Q 005817          228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ  307 (676)
Q Consensus       228 lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (676)
                      +|...+......                                                                   +
T Consensus        92 ~~~~l~~~~~~~-------------------------------------------------------------------~  104 (330)
T 3hym_B           92 SWFAVGCYYLMV-------------------------------------------------------------------G  104 (330)
T ss_dssp             HHHHHHHHHHHS-------------------------------------------------------------------C
T ss_pred             HHHHHHHHHHHh-------------------------------------------------------------------h
Confidence            887776543321                                                                   2


Q ss_pred             -hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817          308 -GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE  386 (676)
Q Consensus       308 -~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~  386 (676)
                       +++.|...|+++++..|++...|..+..++...   +..+.+...+++++...|++...|..++..+..          
T Consensus       105 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----------  171 (330)
T 3hym_B          105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE---SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----------  171 (330)
T ss_dssp             SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----------
T ss_pred             hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH----------
Confidence             456789999999999999888887766665543   357899999999999999999999999998876          


Q ss_pred             CcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC-------
Q 005817          387 DIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG-------  458 (676)
Q Consensus       387 ~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~-------  458 (676)
                         .+++++|...|+++++..|... .|.........                  .|+++.|...|++++...       
T Consensus       172 ---~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~a~~~~~~~~~~~  230 (330)
T 3hym_B          172 ---TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ------------------NGEWKTAEKWFLDALEKIKAIGNEV  230 (330)
T ss_dssp             ---TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHTTTSCSC
T ss_pred             ---HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cccHHHHHHHHHHHHHHhhhccccc
Confidence               5789999999999999888654 55444443333                  467899999999999874       


Q ss_pred             --CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          459 --CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       459 --p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                        |..+.+|...+..+...|++++|...+++++ ...|.+...|...+.+....|          +.+++.+.|++++..
T Consensus       231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~  299 (330)
T 3hym_B          231 TVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL-VLIPQNASTYSAIGYIHSLMG----------NFENAVDYFHTALGL  299 (330)
T ss_dssp             TTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCSHHHHHHHHHHHHHT----------CHHHHHHHHHTTTTT
T ss_pred             cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hhCccchHHHHHHHHHHHHhc----------cHHHHHHHHHHHHcc
Confidence              5567899999999999999999999999999 889999999999998888776          479999999999987


Q ss_pred             cChh
Q 005817          537 VSAL  540 (676)
Q Consensus       537 ~~~~  540 (676)
                      .|..
T Consensus       300 ~p~~  303 (330)
T 3hym_B          300 RRDD  303 (330)
T ss_dssp             CSCC
T ss_pred             CCCc
Confidence            7644

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.68  E-value=3.1e-15  Score=157.23  Aligned_cols=283  Identities=12%  Similarity=-0.001  Sum_probs=219.1

Q ss_pred             HHHHH-HHHHHHHhCCCC----HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHH
Q 005817          141 ARILE-IYRLAVMRFKGD----IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARAL  214 (676)
Q Consensus       141 ~~~~~-iyeral~~~p~~----~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~  214 (676)
                      ..+.. .|++++...|.+    ...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|...
T Consensus        42 ~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~  120 (368)
T 1fch_A           42 DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISA  120 (368)
T ss_dssp             ----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHH
Confidence            44555 777777777776    355788888877777 578999999999999999999999999886 68899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc
Q 005817          215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN  294 (676)
Q Consensus       215 ~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (676)
                      |++++...|.+..+|..++......                                                       
T Consensus       121 ~~~al~~~~~~~~~~~~l~~~~~~~-------------------------------------------------------  145 (368)
T 1fch_A          121 LRRCLELKPDNQTALMALAVSFTNE-------------------------------------------------------  145 (368)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHT-------------------------------------------------------
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHc-------------------------------------------------------
Confidence            9999999999888887776554321                                                       


Q ss_pred             hhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHH---------------HHHHHHhcccCcHHHHHHHHHHHHhc
Q 005817          295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRF---------------FEIVEATNLAQSDDMHDKILSDMQRD  359 (676)
Q Consensus       295 ~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~---------------~~~~~~fe~~~~~~~a~~il~~~~~~  359 (676)
                                  ++++.|...|++++...|.+...+...               +..+..   .+..+.+...+++++..
T Consensus       146 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~  210 (368)
T 1fch_A          146 ------------SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS---DSLFLEVKELFLAAVRL  210 (368)
T ss_dssp             ------------TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             ------------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh---cccHHHHHHHHHHHHHh
Confidence                        245667778888887777665443211               111111   12467888999999999


Q ss_pred             CCC--ChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCC
Q 005817          360 FLV--DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSEL  436 (676)
Q Consensus       360 ~p~--~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~  436 (676)
                      .|+  ++.+|..++..+..             .+++++|...|+++++..|... .|.........              
T Consensus       211 ~p~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--------------  263 (368)
T 1fch_A          211 DPTSIDPDVQCGLGVLFNL-------------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN--------------  263 (368)
T ss_dssp             STTSCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------
T ss_pred             CcCcccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--------------
Confidence            999  78889999988875             5789999999999999887643 55444433333              


Q ss_pred             ChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh-----------HHHHHHHHH
Q 005817          437 PSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS-----------VQLWLLRIS  505 (676)
Q Consensus       437 ~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~-----------~~lW~~~i~  505 (676)
                          .|+++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+           ...|..++.
T Consensus       264 ----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~l~~  338 (368)
T 1fch_A          264 ----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL-NMQRKSRGPRGEGGAMSENIWSTLRL  338 (368)
T ss_dssp             ----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHTC------CCCCCHHHHHHHHH
T ss_pred             ----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCCCccccccchhhHHHHHHHH
Confidence                3779999999999999999999999999999999999999999999999 777876           899999998


Q ss_pred             HHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          506 VEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       506 l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      .....|.          .+.+..++.+++..
T Consensus       339 ~~~~~g~----------~~~A~~~~~~~l~~  359 (368)
T 1fch_A          339 ALSMLGQ----------SDAYGAADARDLST  359 (368)
T ss_dssp             HHHHHTC----------GGGHHHHHTTCHHH
T ss_pred             HHHHhCC----------hHhHHHhHHHHHHH
Confidence            8887764          56666666666543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.67  E-value=2.9e-15  Score=157.65  Aligned_cols=255  Identities=12%  Similarity=0.010  Sum_probs=198.9

Q ss_pred             HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817          158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME  236 (676)
Q Consensus       158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e  236 (676)
                      ...|...+..+...| +..+...|++++...|.++..|...+.... ..|+++.|...|++++...|.+..+|...+.+.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCLELQPNNLKALMALAVSY  143 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            344888888777777 578999999999999999999999999886 688999999999999999999888887776654


Q ss_pred             HHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHH
Q 005817          237 LTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIY  316 (676)
Q Consensus       237 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy  316 (676)
                      ...                                                                   ++++.|..+|
T Consensus       144 ~~~-------------------------------------------------------------------g~~~~A~~~~  156 (365)
T 4eqf_A          144 TNT-------------------------------------------------------------------SHQQDACEAL  156 (365)
T ss_dssp             HHT-------------------------------------------------------------------TCHHHHHHHH
T ss_pred             Hcc-------------------------------------------------------------------ccHHHHHHHH
Confidence            321                                                                   2567788899


Q ss_pred             HHHHhcCCCchhHHHHHH-------HHHHHhcccCcHHHHHHHHHHHHhcCCC--ChhhHHHHHHHhccccCCCCCCCcC
Q 005817          317 SGAVEALPSSFNLRQRFF-------EIVEATNLAQSDDMHDKILSDMQRDFLV--DPKYWDWLARLKMTDSVSKDGTSED  387 (676)
Q Consensus       317 ~~Al~~~p~~~~~~~~~~-------~~~~~fe~~~~~~~a~~il~~~~~~~p~--~~~~w~~la~~~~~~~~~~~~~~~~  387 (676)
                      +++++..|++...+..+.       .+...+...+..+.+...+++++...|+  ++.+|..++..+..           
T Consensus       157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-----------  225 (365)
T 4eqf_A          157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-----------  225 (365)
T ss_dssp             HHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-----------
T ss_pred             HHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-----------
Confidence            999988777655443320       0011111123567899999999999999  88899999988865           


Q ss_pred             cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817          388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (676)
Q Consensus       388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~  466 (676)
                        .+++++|...|+++++..|... .|.........                  .|+++.|+..|++++..+|.++..|.
T Consensus       226 --~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~  285 (365)
T 4eqf_A          226 --SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN------------------GDRSEEAVEAYTRALEIQPGFIRSRY  285 (365)
T ss_dssp             --HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCchHHHH
Confidence              5789999999999999888644 56554444433                  37799999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhccCCC------------hHHHHHHHHHHHHHhcc
Q 005817          467 RYVTLYLQLGKLDEARKLAAKLCSGKLSD------------SVQLWLLRISVEIRCVT  512 (676)
Q Consensus       467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~------------~~~lW~~~i~l~~~~~~  512 (676)
                      ..+..+...|++++|+..+++++ ...|.            +..+|..........|.
T Consensus       286 ~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  342 (365)
T 4eqf_A          286 NLGISCINLGAYREAVSNFLTAL-SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ  342 (365)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHH-HHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH-HhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence            99999999999999999999999 76665            35778777776665553

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.66  E-value=9.7e-14  Score=151.30  Aligned_cols=370  Identities=12%  Similarity=-0.023  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHHcc-CchHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-----
Q 005817          160 LWFKYMEFCRQRK-NGRMKKVLAQVIRF---------HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT-----  224 (676)
Q Consensus       160 lW~~y~~~~~~~~-~~~~~~~~~ral~~---------~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~-----  224 (676)
                      ++...+......| ++.|...|++|+.+         +|.....|...+.... ..|+++.|...|++++..+|.     
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhccccc
Confidence            3333333333445 57899999999886         6777778888777775 688999999999999987542     


Q ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhh
Q 005817          225 ---SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSV  301 (676)
Q Consensus       225 ---~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (676)
                         ...++.........                                                               
T Consensus       132 ~~~~~~~~~~~g~~~~~---------------------------------------------------------------  148 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLK---------------------------------------------------------------  148 (472)
T ss_dssp             CCCCHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred             chhhHHHHHHHHHHHHH---------------------------------------------------------------
Confidence               22222211100000                                                               


Q ss_pred             hhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCC
Q 005817          302 DLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK  381 (676)
Q Consensus       302 ~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~  381 (676)
                        +..++++.|...|++|++..|++++++..+..++......+..+.+...++++++..|+++.++..++.......   
T Consensus       149 --~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~---  223 (472)
T 4g1t_A          149 --CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR---  223 (472)
T ss_dssp             --HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC---
T ss_pred             --HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH---
Confidence              001367899999999999999998888776655443332223456777889999999999998877765432211   


Q ss_pred             CCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC
Q 005817          382 DGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL  460 (676)
Q Consensus       382 ~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~  460 (676)
                            ...++++.|...|++++...|... .|.........                  .+.+++|...|++|+..+|.
T Consensus       224 ------~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~------------------~~~~~~A~~~~~~al~~~p~  279 (472)
T 4g1t_A          224 ------EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR------------------KDEPDKAIELLKKALEYIPN  279 (472)
T ss_dssp             ------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHSTT
T ss_pred             ------hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------------------cCchHHHHHHHHHHHHhCCC
Confidence                  114677899999999999887644 44333333322                  46789999999999999999


Q ss_pred             cHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChh
Q 005817          461 TEDIAHRYVTLYLQ-------------------LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA  521 (676)
Q Consensus       461 ~~~lw~~~~~l~~~-------------------~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~  521 (676)
                      ++.++...+..+..                   .+.++.|...+++++ ...|.+...|...+.+....+          
T Consensus       280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~lg~~~~~~~----------  348 (472)
T 4g1t_A          280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD-EANDNLFRVCSILASLHALAD----------  348 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH-HHCTTTCCCHHHHHHHHHHTT----------
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh-hcCCchhhhhhhHHHHHHHhc----------
Confidence            99988877765532                   233677888899999 788998888888888887766          


Q ss_pred             chHHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCH
Q 005817          522 DILSIFELLKCILTKVSALE-SESLWLMALKFFMNQK---HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI  597 (676)
Q Consensus       522 ~~~~~~~~f~~Al~~~~~~~-~~~lW~~~l~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~  597 (676)
                      +.+++.+.|++|+...+... ...++..+........   +.+...|++|+. +.|..     ..          ..+..
T Consensus       349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~-i~~~~-----~~----------~~~~~  412 (472)
T 4g1t_A          349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK-INQKS-----RE----------KEKMK  412 (472)
T ss_dssp             CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-SCCCC-----HH----------HHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCccc-----HH----------HHHHH
Confidence            48999999999998654332 2223333332222111   334445565554 33332     11          12234


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc
Q 005817          598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT  655 (676)
Q Consensus       598 ~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~  655 (676)
                      ..+.+++++++...|.+...|.....+....|      +.+.|.++|++|++..|..|
T Consensus       413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g------~~~~A~~~y~kALe~~~~~p  464 (472)
T 4g1t_A          413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNE------KMQQADEDSERGLESGSLIP  464 (472)
T ss_dssp             HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH------HCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhcCCCCC
Confidence            56778889999888888888877777777777      88999999999999877544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.66  E-value=2.5e-14  Score=147.24  Aligned_cols=268  Identities=9%  Similarity=-0.034  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817          160 LWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELT  238 (676)
Q Consensus       160 lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~  238 (676)
                      .|...+..+...| ...+..+|++++...|.++..|...+.... ..|+++.|...|++++...|.+..+|...+.....
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            3444555544544 466777777777777777777777777665 56677777777777777777776666555443321


Q ss_pred             HHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHH
Q 005817          239 YLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSG  318 (676)
Q Consensus       239 ~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~  318 (676)
                      .                                                                   ++++.|...|++
T Consensus       102 ~-------------------------------------------------------------------~~~~~A~~~~~~  114 (327)
T 3cv0_A          102 E-------------------------------------------------------------------HNANAALASLRA  114 (327)
T ss_dssp             T-------------------------------------------------------------------TCHHHHHHHHHH
T ss_pred             c-------------------------------------------------------------------CCHHHHHHHHHH
Confidence            1                                                                   234556667777


Q ss_pred             HHhcCCCchhHHHHHHHHH----------HH--hcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817          319 AVEALPSSFNLRQRFFEIV----------EA--TNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE  386 (676)
Q Consensus       319 Al~~~p~~~~~~~~~~~~~----------~~--fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~  386 (676)
                      +++..|.+...+..+....          ..  +...+..+.+...+++++...|+++.+|..+|..+..          
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----------  184 (327)
T 3cv0_A          115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL----------  184 (327)
T ss_dssp             HHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----------
T ss_pred             HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------
Confidence            7766666544443321110          11  1112245678888999999999999999999988865          


Q ss_pred             CcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHH
Q 005817          387 DIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIA  465 (676)
Q Consensus       387 ~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw  465 (676)
                         .+++++|...|+++++..|... .|.........                  .|+++.|...|++++..+|.++..|
T Consensus       185 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~a~~~~~~~~~~~  243 (327)
T 3cv0_A          185 ---SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN------------------GNRPQEALDAYNRALDINPGYVRVM  243 (327)
T ss_dssp             ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ---hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCHHHH
Confidence               5789999999999999887643 45444433332                  3678999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhccCCC------------hHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHH
Q 005817          466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSD------------SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI  533 (676)
Q Consensus       466 ~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------------~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~A  533 (676)
                      ...+..+...|++++|...+++++ ...|.            +...|...+......|.          .+++..+++++
T Consensus       244 ~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~  312 (327)
T 3cv0_A          244 YNMAVSYSNMSQYDLAAKQLVRAI-YMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR----------PDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-HHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC----------HHHHHHHTTCC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHH-HhCCccccccccchhhcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHH
Confidence            999999999999999999999999 88888            78999999888887764          67777777766


Q ss_pred             Hhhc
Q 005817          534 LTKV  537 (676)
Q Consensus       534 l~~~  537 (676)
                      +...
T Consensus       313 l~~~  316 (327)
T 3cv0_A          313 VEPF  316 (327)
T ss_dssp             SHHH
T ss_pred             HHhc
Confidence            6544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.65  E-value=1.9e-14  Score=151.43  Aligned_cols=258  Identities=10%  Similarity=0.021  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|..+|++++...|.+...|..++..+...| ...+...|++++..+|.++..|...+.... ..|+++.|..+|+++
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a  159 (365)
T 4eqf_A           81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT-NTSHQQDACEALKNW  159 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-ccccHHHHHHHHHHH
Confidence            577899999999999999999999999998887 578999999999999999999999999886 788999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (676)
                      +...|.+..+|...........        .++.                                              
T Consensus       160 l~~~p~~~~~~~~~~~~~~~~~--------~l~~----------------------------------------------  185 (365)
T 4eqf_A          160 IKQNPKYKYLVKNKKGSPGLTR--------RMSK----------------------------------------------  185 (365)
T ss_dssp             HHHCHHHHCC----------------------------------------------------------------------
T ss_pred             HHhCccchHHHhhhccchHHHH--------HHHH----------------------------------------------
Confidence            9999976665554421100000        0000                                              


Q ss_pred             hhhhhHHHhhhHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817          299 KSVDLFREQGLRVLQTIYSGAVEALPS--SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (676)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~--~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~  376 (676)
                         .....++++.|..+|+++++..|+  +...+..+..++...   +..+.+...+++++...|+++.+|..++..+..
T Consensus       186 ---~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  259 (365)
T 4eqf_A          186 ---SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS---GEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN  259 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ---HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence               000124778999999999999998  677777665555443   367899999999999999999999999999876


Q ss_pred             ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHH
Q 005817          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE  455 (676)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al  455 (676)
                                   .+++++|+..|+++++..|... .|.........                  .|++++|+..|++++
T Consensus       260 -------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al  308 (365)
T 4eqf_A          260 -------------GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN------------------LGAYREAVSNFLTAL  308 (365)
T ss_dssp             -------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HTCCHHHHHHHHHHH
T ss_pred             -------------cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH------------------CCCHHHHHHHHHHHH
Confidence                         5789999999999999888643 45444443333                  467899999999999


Q ss_pred             HcCCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          456 AMGCL------------TEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       456 ~~~p~------------~~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      ...|.            +..+|...+..+...|+.+.|..+..+.+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l  354 (365)
T 4eqf_A          309 SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL  354 (365)
T ss_dssp             HHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred             HhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence            98665            35789999999999999999888777665

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.62  E-value=4.9e-14  Score=144.95  Aligned_cols=267  Identities=16%  Similarity=0.083  Sum_probs=209.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...+..+|++++...|++...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus        37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~  115 (327)
T 3cv0_A           37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAW  115 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            577899999999999999999999999888877 578999999999999999999999999886 688999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (676)
                      +...|.+..+|..+.........   ..  .++.                          .                   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~--------------------------~-------------------  145 (327)
T 3cv0_A          116 LLSQPQYEQLGSVNLQADVDIDD---LN--VQSE--------------------------D-------------------  145 (327)
T ss_dssp             HHTSTTTTTC----------------------------------------------------------------------
T ss_pred             HHhCCccHHHHHHHhHHHHHHHH---HH--HHHH--------------------------h-------------------
Confidence            99999887766655322110000   00  0000                          0                   


Q ss_pred             hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcccc
Q 005817          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS  378 (676)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~  378 (676)
                        .-....++++.|..+|+++++..|++...+..+..++...   +..+.+...+++++...|+++.+|..+|..+..  
T Consensus       146 --~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--  218 (327)
T 3cv0_A          146 --FFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS---NNYDSAAANLRRAVELRPDDAQLWNKLGATLAN--  218 (327)
T ss_dssp             --CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred             --HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Confidence              0011135778999999999999999887777766655443   357889999999999999999999999998876  


Q ss_pred             CCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc
Q 005817          379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (676)
Q Consensus       379 ~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~  457 (676)
                                 .+++++|...|+++++..|... .|.........                  .|+++.|...|++++..
T Consensus       219 -----------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          219 -----------GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN------------------MSQYDLAAKQLVRAIYM  269 (327)
T ss_dssp             -----------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHH
T ss_pred             -----------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------hccHHHHHHHHHHHHHh
Confidence                       5789999999999999887643 44443333332                  47789999999999999


Q ss_pred             CCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005817          458 GCL------------TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS  494 (676)
Q Consensus       458 ~p~------------~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P  494 (676)
                      .|.            ++..|...+..+...|++++|..++++++ ..+|
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~  317 (327)
T 3cv0_A          270 QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV-EPFA  317 (327)
T ss_dssp             HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS-HHHH
T ss_pred             CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-Hhcc
Confidence            888            78999999999999999999999999888 5444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.60  E-value=1.7e-13  Score=143.74  Aligned_cols=264  Identities=14%  Similarity=0.062  Sum_probs=208.4

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....+...|++++...|.+...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|...|++
T Consensus        79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~  157 (368)
T 1fch_A           79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT-NESLQRQACEILRD  157 (368)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence            3578899999999999999999999999988887 578999999999999999999999999886 68899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      ++...|.+..+|...........         .+.                       .                    .
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----------------------~--------------------~  185 (368)
T 1fch_A          158 WLRYTPAYAHLVTPAEEGAGGAG---------LGP-----------------------S--------------------K  185 (368)
T ss_dssp             HHHTSTTTGGGCC-------------------------------------------------------------------
T ss_pred             HHHhCcCcHHHHHHHHHHhhhhc---------ccH-----------------------H--------------------H
Confidence            99999998766644322110000         000                       0                    0


Q ss_pred             hhhhhhHHHhhhHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhc
Q 005817          298 QKSVDLFREQGLRVLQTIYSGAVEALPS--SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKM  375 (676)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~--~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~  375 (676)
                      ......+..++++.|..+|+++++..|+  +...+..+..++...   +..+.+...+++++...|+++.+|..+|..+.
T Consensus       186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  262 (368)
T 1fch_A          186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA  262 (368)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            0011122346889999999999999998  666666665555443   36788999999999999999999999999887


Q ss_pred             cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHH
Q 005817          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA  454 (676)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~a  454 (676)
                      .             .+++++|...|+++++..|... .|.........                  .|+++.|...|+++
T Consensus       263 ~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~a  311 (368)
T 1fch_A          263 N-------------GNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN------------------LGAHREAVEHFLEA  311 (368)
T ss_dssp             H-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHH
T ss_pred             H-------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------------CCCHHHHHHHHHHH
Confidence            6             5789999999999999877643 44333333332                  47799999999999


Q ss_pred             HHcCCCc-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          455 EAMGCLT-----------EDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       455 l~~~p~~-----------~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      +...|.+           ..+|...+..+...|++++|..++.+++
T Consensus       312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence            9987776           8999999999999999999999988877

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.56  E-value=2.1e-13  Score=144.36  Aligned_cols=264  Identities=11%  Similarity=0.078  Sum_probs=207.1

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCCCHH
Q 005817          150 AVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN-VTAARALMQNGLRVCPTSEE  227 (676)
Q Consensus       150 al~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~-~~~Ar~~~~ral~~~p~~~~  227 (676)
                      ++...|++...|......+...| +..+...|++++.++|+++.+|...+.... ..|+ ++.|...|++++..+|++..
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~  167 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQ  167 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHH
Confidence            45567888899998888887777 689999999999999999999999999886 5675 99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHh
Q 005817          228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ  307 (676)
Q Consensus       228 lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (676)
                      +|.....+....                                                                   +
T Consensus       168 a~~~~g~~~~~~-------------------------------------------------------------------g  180 (382)
T 2h6f_A          168 VWHHRRVLVEWL-------------------------------------------------------------------R  180 (382)
T ss_dssp             HHHHHHHHHHHH-------------------------------------------------------------------T
T ss_pred             HHHHHHHHHHHc-------------------------------------------------------------------c
Confidence            998877654321                                                                   1


Q ss_pred             hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~  387 (676)
                      +++.|...|++|++..|++...|..+-.++..++   ..+.+...++++++.+|++..+|..++..+....+...     
T Consensus       181 ~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g---~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~-----  252 (382)
T 2h6f_A          181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK---LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND-----  252 (382)
T ss_dssp             CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS-----
T ss_pred             CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch-----
Confidence            4456899999999999999998887766666554   45689999999999999999999999988765211100     


Q ss_pred             cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817          388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH  466 (676)
Q Consensus       388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~  466 (676)
                        ...++.+...|++++...|... .|......... .   +            .+.++++...++++ ..+|.++..+.
T Consensus       253 --eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~-~---g------------~~~~~~a~~~~~~~-~~~p~~~~al~  313 (382)
T 2h6f_A          253 --RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-R---G------------LSKYPNLLNQLLDL-QPSHSSPYLIA  313 (382)
T ss_dssp             --HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-T---C------------GGGCHHHHHHHHHH-TTTCCCHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc-c---C------------ccchHHHHHHHHHh-ccCCCCHHHHH
Confidence              1113445789999999988765 55433322221 0   0            12467788888887 77899999999


Q ss_pred             HHHHHHHhcC---------CHHHHHHHHHHH-hhccCCChHHHHHHHHHHHHH
Q 005817          467 RYVTLYLQLG---------KLDEARKLAAKL-CSGKLSDSVQLWLLRISVEIR  509 (676)
Q Consensus       467 ~~~~l~~~~~---------~~~~A~~l~~~a-l~~~~P~~~~lW~~~i~l~~~  509 (676)
                      ..+.++.+.|         .+++|+.+|+++ + +..|.....|..++.....
T Consensus       314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~-~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          314 FLVDIYEDMLENQCDNKEDILNKALELCEILAK-EKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHH
Confidence            9999988764         258999999999 8 8899999999988766553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.49  E-value=2.4e-12  Score=125.06  Aligned_cols=210  Identities=13%  Similarity=0.015  Sum_probs=143.5

Q ss_pred             CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817          155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (676)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~  233 (676)
                      |.+...|...+..+...| ...+...|++++...|+++..|...+.... ..|+++.|...|++++...|++...|..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            777888888888877776 478888899999999998888888888875 678889999999999999998888877766


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (676)
Q Consensus       234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (676)
                      .+......         .                                                        .     
T Consensus        81 ~~~~~~~~---------~--------------------------------------------------------~-----   90 (217)
T 2pl2_A           81 EAYVALYR---------Q--------------------------------------------------------A-----   90 (217)
T ss_dssp             HHHHHHHH---------T--------------------------------------------------------C-----
T ss_pred             HHHHHhhh---------h--------------------------------------------------------h-----
Confidence            55432100         0                                                        0     


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHH
Q 005817          314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM  393 (676)
Q Consensus       314 ~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~  393 (676)
                                +.   ..      ..    .+..+.+...++++++..|+++.+|..++..+..             .+++
T Consensus        91 ----------~~---~~------~~----~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~-------------~g~~  134 (217)
T 2pl2_A           91 ----------ED---RE------RG----KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL-------------LGER  134 (217)
T ss_dssp             ----------SS---HH------HH----HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCH
T ss_pred             ----------hh---hc------cc----ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------------cCCh
Confidence                      00   00      00    0134567777778888888888888888887765             5788


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 005817          394 QKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL  473 (676)
Q Consensus       394 ~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~  473 (676)
                      ++|+..|+++++.......|.........                  .|+++.|+..|++++..+|.++..+...+.++.
T Consensus       135 ~~A~~~~~~al~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~  196 (217)
T 2pl2_A          135 DKAEASLKQALALEDTPEIRSALAELYLS------------------MGRLDEALAQYAKALEQAPKDLDLRVRYASALL  196 (217)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            99999999999876222344443333332                  477899999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHh
Q 005817          474 QLGKLDEARKLAAKLC  489 (676)
Q Consensus       474 ~~~~~~~A~~l~~~al  489 (676)
                      ..|++++|...++++-
T Consensus       197 ~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          197 LKGKAEEAARAAALEH  212 (217)
T ss_dssp             C---------------
T ss_pred             HccCHHHHHHHHHHHh
Confidence            9999999998888765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.46  E-value=7.7e-12  Score=123.64  Aligned_cols=234  Identities=11%  Similarity=-0.025  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005817          158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS-------EELW  229 (676)
Q Consensus       158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~-------~~lW  229 (676)
                      ...|...+..+...| +..+...|++++... .++..|...+.... ..|+++.|...|++++...|.+       ..+|
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEY-EKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            466777777777766 578999999999999 88999999999886 6889999999999999998865       2333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhh
Q 005817          230 VEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGL  309 (676)
Q Consensus       230 ~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (676)
                      ...+.....                                                                   .+++
T Consensus        83 ~~l~~~~~~-------------------------------------------------------------------~~~~   95 (258)
T 3uq3_A           83 ARIGNAYHK-------------------------------------------------------------------LGDL   95 (258)
T ss_dssp             HHHHHHHHH-------------------------------------------------------------------TTCH
T ss_pred             HHHHHHHHH-------------------------------------------------------------------cccH
Confidence            333322111                                                                   1356


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcc
Q 005817          310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV  389 (676)
Q Consensus       310 ~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~  389 (676)
                      +.|...|++++...|.. ...       ...   +..+.+...+++++...|.++.+|..+|..+..             
T Consensus        96 ~~A~~~~~~a~~~~~~~-~~~-------~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  151 (258)
T 3uq3_A           96 KKTIEYYQKSLTEHRTA-DIL-------TKL---RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT-------------  151 (258)
T ss_dssp             HHHHHHHHHHHHHCCCH-HHH-------HHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHhcCchh-HHH-------HHH---hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-------------
Confidence            78999999999988763 221       111   235678889999999999999999999998876             


Q ss_pred             hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~  468 (676)
                      .++++.|...|+++++..|... .|.........                  .|+++.|...|++++..+|.++..|...
T Consensus       152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~al~~~~~~~~~~~~l  213 (258)
T 3uq3_A          152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK------------------LMSFPEAIADCNKAIEKDPNFVRAYIRK  213 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------------hCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            5789999999999999888644 44433333322                  3678999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccC------CChHHHHHHH
Q 005817          469 VTLYLQLGKLDEARKLAAKLCSGKL------SDSVQLWLLR  503 (676)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~------P~~~~lW~~~  503 (676)
                      +..+...|++++|...+++++ +..      |.+..++...
T Consensus       214 ~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~p~~~~~~~~l  253 (258)
T 3uq3_A          214 ATAQIAVKEYASALETLDAAR-TKDAEVNNGSSAREIDQLY  253 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-HHHHHHHTTTTHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHH-HhChhhcCCCchHHHHHHH
Confidence            999999999999999999999 777      7777776654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.45  E-value=1.9e-11  Score=129.33  Aligned_cols=244  Identities=10%  Similarity=0.089  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ..+|...|++++...|++...|......+...|  ...+...|++++..+|+++.+|...+.... ..|+++.|...|++
T Consensus       113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~k  191 (382)
T 2h6f_A          113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIAD  191 (382)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence            578899999999999999999999999988876  478999999999999999999999999875 67899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      +|...|++..+|.....+....                                                          
T Consensus       192 al~ldP~~~~a~~~lg~~~~~~----------------------------------------------------------  213 (382)
T 2h6f_A          192 ILNQDAKNYHAWQHRQWVIQEF----------------------------------------------------------  213 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHH----------------------------------------------------------
T ss_pred             HHHhCccCHHHHHHHHHHHHHc----------------------------------------------------------
Confidence            9999999999997766543321                                                          


Q ss_pred             hhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHH-----HHHHHHHHhcCCCChhhHHHHHH
Q 005817          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMH-----DKILSDMQRDFLVDPKYWDWLAR  372 (676)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a-----~~il~~~~~~~p~~~~~w~~la~  372 (676)
                               +.++.|...|++|++..|++...|..+..++....  +..+.+     ...+++++...|++..+|..++.
T Consensus       214 ---------g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~--~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~  282 (382)
T 2h6f_A          214 ---------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT--GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG  282 (382)
T ss_dssp             ---------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             ---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence                     13456899999999999999999988776665522  111233     47799999999999999999998


Q ss_pred             HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHH
Q 005817          373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVY  451 (676)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iy  451 (676)
                      .+...+           .+++++|.+.++++ +..|... .+...+............+         ..+.+++|..+|
T Consensus       283 ll~~~g-----------~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~---------~~~~~~~A~~~~  341 (382)
T 2h6f_A          283 ILQDRG-----------LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN---------KEDILNKALELC  341 (382)
T ss_dssp             HHTTTC-----------GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS---------HHHHHHHHHHHH
T ss_pred             HHHccC-----------ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc---------hHHHHHHHHHHH
Confidence            775421           12577888888877 5555433 3333333333321000000         012368999999


Q ss_pred             HHH-HHcCCCcHHHHHHHHHHHHh
Q 005817          452 EKA-EAMGCLTEDIAHRYVTLYLQ  474 (676)
Q Consensus       452 e~a-l~~~p~~~~lw~~~~~l~~~  474 (676)
                      +++ +..+|.....|...+..+..
T Consensus       342 ~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          342 EILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHH
Confidence            999 89999999999998887654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.44  E-value=5.3e-12  Score=126.36  Aligned_cols=248  Identities=10%  Similarity=0.005  Sum_probs=181.5

Q ss_pred             HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH----HHHH
Q 005817          158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEEL----WVEY  232 (676)
Q Consensus       158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~l----W~~y  232 (676)
                      .+.+..++..+...| ++.+...|++++...|.++..|...+.... ..|+++.|...|++++. .|.++.+    |...
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            456677777777776 578999999999999999999999988776 68899999999999999 5544433    4333


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHH
Q 005817          233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL  312 (676)
Q Consensus       233 ~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (676)
                      +.....                                                                   .++++.|
T Consensus        81 g~~~~~-------------------------------------------------------------------~~~~~~A   93 (272)
T 3u4t_A           81 GKILMK-------------------------------------------------------------------KGQDSLA   93 (272)
T ss_dssp             HHHHHH-------------------------------------------------------------------TTCHHHH
T ss_pred             HHHHHH-------------------------------------------------------------------cccHHHH
Confidence            332211                                                                   1356788


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHH-HHhccccCCCCCCCcCcchh
Q 005817          313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA-RLKMTDSVSKDGTSEDIVPS  391 (676)
Q Consensus       313 ~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la-~~~~~~~~~~~~~~~~~~~~  391 (676)
                      ...|+++++..|++...+..+..++...   +..+.+...+++++...|.++.+|..++ ..+..              +
T Consensus        94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--------------~  156 (272)
T 3u4t_A           94 IQQYQAAVDRDTTRLDMYGQIGSYFYNK---GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN--------------K  156 (272)
T ss_dssp             HHHHHHHHHHSTTCTHHHHHHHHHHHHT---TCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT--------------T
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHc---cCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH--------------H
Confidence            9999999999998888887776666543   3578899999999999999999999999 66543              4


Q ss_pred             HHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC---CC-----cH
Q 005817          392 QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---CL-----TE  462 (676)
Q Consensus       392 ~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~---p~-----~~  462 (676)
                      ++++|...|+++++..|... .|...........   .            ....+.|...|++++...   |.     ..
T Consensus       157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~---~------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  221 (272)
T 3u4t_A          157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQD---P------------DTKQGLAKPYYEKLIEVCAPGGAKYKDELI  221 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS---T------------TCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC---c------------chhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence            78999999999999888643 2222222222210   0            011455777777777653   33     13


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (676)
                      ..|...+.++...|++++|...+++++ ...|+++..|.....+.
T Consensus       222 ~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~~~l~~~~  265 (272)
T 3u4t_A          222 EANEYIAYYYTINRDKVKADAAWKNIL-ALDPTNKKAIDGLKMKL  265 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHC---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCccHHHHHHHhhhhh
Confidence            678889999999999999999999999 89999998887765443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.38  E-value=4.7e-11  Score=118.01  Aligned_cols=212  Identities=11%  Similarity=0.040  Sum_probs=151.8

Q ss_pred             hCCCC-HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005817          153 RFKGD-IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV  230 (676)
Q Consensus       153 ~~p~~-~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~  230 (676)
                      ..|.+ ...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|...|++++...|.+..+|.
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~  109 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVLN  109 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence            45655 678888888777766 578888999999999988888888888875 678899999999999998888877776


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhH
Q 005817          231 EYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLR  310 (676)
Q Consensus       231 ~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (676)
                      .++.+....                                                                   ++++
T Consensus       110 ~la~~~~~~-------------------------------------------------------------------g~~~  122 (252)
T 2ho1_A          110 NYGGFLYEQ-------------------------------------------------------------------KRYE  122 (252)
T ss_dssp             HHHHHHHHT-------------------------------------------------------------------TCHH
T ss_pred             HHHHHHHHH-------------------------------------------------------------------hHHH
Confidence            665443221                                                                   2456


Q ss_pred             HHHHHHHHHHh--cCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCc
Q 005817          311 VLQTIYSGAVE--ALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI  388 (676)
Q Consensus       311 ~a~~iy~~Al~--~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~  388 (676)
                      .|..+|++++.  ..|.+.                                     .+|..+|..+..            
T Consensus       123 ~A~~~~~~~~~~~~~~~~~-------------------------------------~~~~~la~~~~~------------  153 (252)
T 2ho1_A          123 EAYQRLLEASQDTLYPERS-------------------------------------RVFENLGLVSLQ------------  153 (252)
T ss_dssp             HHHHHHHHHTTCTTCTTHH-------------------------------------HHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHhCccCcccH-------------------------------------HHHHHHHHHHHH------------
Confidence            77888887777  334332                                     333344444433            


Q ss_pred             chhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817          389 VPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (676)
Q Consensus       389 ~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~  467 (676)
                       .+++++|...|+++++..|... .|...+.....                  .|+++.|...|++++...|.++..+..
T Consensus       154 -~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~  214 (252)
T 2ho1_A          154 -MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK------------------EREYVPARQYYDLFAQGGGQNARSLLL  214 (252)
T ss_dssp             -TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence             3567777777877777666533 33333333322                  356788888888888888888888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL  501 (676)
Q Consensus       468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~  501 (676)
                      .+.++...|++++|...+++++ ...|+++..+.
T Consensus       215 ~~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~  247 (252)
T 2ho1_A          215 GIRLAKVFEDRDTAASYGLQLK-RLYPGSLEYQE  247 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-HHCTTSHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHH-HHCCCCHHHHH
Confidence            8888888899999998999888 77888776554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.38  E-value=1e-10  Score=112.85  Aligned_cols=213  Identities=13%  Similarity=0.019  Sum_probs=128.4

Q ss_pred             CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005817          154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY  232 (676)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y  232 (676)
                      .|.+...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|..+|++++...|.+..+|..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            4555566666666555554 355666666666666666666666665554 45566666666666666666555544433


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHH-hhhHH
Q 005817          233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE-QGLRV  311 (676)
Q Consensus       233 ~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  311 (676)
                      +.+...                                                                   . ++++.
T Consensus        83 ~~~~~~-------------------------------------------------------------------~~~~~~~   95 (225)
T 2vq2_A           83 GWFLCG-------------------------------------------------------------------RLNRPAE   95 (225)
T ss_dssp             HHHHHT-------------------------------------------------------------------TTCCHHH
T ss_pred             HHHHHH-------------------------------------------------------------------hcCcHHH
Confidence            322110                                                                   0 13345


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchh
Q 005817          312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS  391 (676)
Q Consensus       312 a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~  391 (676)
                      |...|+++++ .|                                  ..|.+..+|..++..+..             .+
T Consensus        96 A~~~~~~~~~-~~----------------------------------~~~~~~~~~~~l~~~~~~-------------~~  127 (225)
T 2vq2_A           96 SMAYFDKALA-DP----------------------------------TYPTPYIANLNKGICSAK-------------QG  127 (225)
T ss_dssp             HHHHHHHHHT-ST----------------------------------TCSCHHHHHHHHHHHHHH-------------TT
T ss_pred             HHHHHHHHHc-Cc----------------------------------CCcchHHHHHHHHHHHHH-------------cC
Confidence            5555555555 11                                  223334445555555543             35


Q ss_pred             HHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC-CcHHHHHHHH
Q 005817          392 QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC-LTEDIAHRYV  469 (676)
Q Consensus       392 ~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p-~~~~lw~~~~  469 (676)
                      ++++|...|+++++..|... .|...+.....                  .|+++.|...|++++..+| .++..+...+
T Consensus       128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  189 (225)
T 2vq2_A          128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKML------------------AGQLGDADYYFKKYQSRVEVLQADDLLLGW  189 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            67777788888777666533 33333332222                  3567888888888888878 7788887778


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817          470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL  501 (676)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~  501 (676)
                      .++...|+.+.|...++.++ +..|+++..+.
T Consensus       190 ~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~  220 (225)
T 2vq2_A          190 KIAKALGNAQAAYEYEAQLQ-ANFPYSEELQT  220 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHH-HhCCCCHHHHH
Confidence            88888888888888888877 67787766543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.37  E-value=1.7e-11  Score=120.12  Aligned_cols=130  Identities=10%  Similarity=0.025  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhc
Q 005817          347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIA  425 (676)
Q Consensus       347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~  425 (676)
                      +.+...+++++...|+++.+|..++..+..             .+++++|...|+++++..|... .|.........   
T Consensus       108 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---  171 (243)
T 2q7f_A          108 KEAKDMFEKALRAGMENGDLFYMLGTVLVK-------------LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN---  171 (243)
T ss_dssp             HHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-------------TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---
Confidence            344444444444445555555556655544             4667888888888887766533 44333333332   


Q ss_pred             CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817          426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (676)
Q Consensus       426 ~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (676)
                                     .|+++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|..+..
T Consensus       172 ---------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~  235 (243)
T 2q7f_A          172 ---------------EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI-DIQPDHMLALHAKKL  235 (243)
T ss_dssp             ---------------HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH-HHCTTCHHHHHHHTC
T ss_pred             ---------------cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH-ccCcchHHHHHHHHH
Confidence                           3567889999999999889999999999999999999999999999999 889999888877665


Q ss_pred             HHH
Q 005817          506 VEI  508 (676)
Q Consensus       506 l~~  508 (676)
                      +..
T Consensus       236 l~~  238 (243)
T 2q7f_A          236 LGH  238 (243)
T ss_dssp             ---
T ss_pred             HHh
Confidence            443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.37  E-value=6.5e-11  Score=114.89  Aligned_cols=192  Identities=13%  Similarity=-0.016  Sum_probs=143.4

Q ss_pred             hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817          307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE  386 (676)
Q Consensus       307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~  386 (676)
                      ++++.|...|+++++..|++...+..+-.++...   +..+.+...++++++..|+++..|..++..+........  ..
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~--~~   93 (217)
T 2pl2_A           19 GRYDAALTLFERALKENPQDPEALYWLARTQLKL---GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAE--DR   93 (217)
T ss_dssp             TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCS--SH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh--hh
Confidence            5678999999999999999988887766555443   357889999999999999999999999998865100000  00


Q ss_pred             CcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHH
Q 005817          387 DIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIA  465 (676)
Q Consensus       387 ~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw  465 (676)
                      ....+++++|...|+++++..|... .|.........                  .|.++.|+..|++++..+ .++..|
T Consensus        94 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~al~~~-~~~~~~  154 (217)
T 2pl2_A           94 ERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL------------------LGERDKAEASLKQALALE-DTPEIR  154 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred             cccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH------------------cCChHHHHHHHHHHHhcc-cchHHH
Confidence            0001899999999999999888654 44433333322                  477999999999999999 899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHH
Q 005817          466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI  533 (676)
Q Consensus       466 ~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~A  533 (676)
                      ...+..+...|++++|+..+++++ +..|+++.+|..++.+....|.          .+++.+.|+++
T Consensus       155 ~~la~~~~~~g~~~~A~~~~~~al-~~~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~  211 (217)
T 2pl2_A          155 SALAELYLSMGRLDEALAQYAKAL-EQAPKDLDLRVRYASALLLKGK----------AEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHTC------------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHccC----------HHHHHHHHHHH
Confidence            999999999999999999999999 8999999999999888776653          55565555554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.35  E-value=2.7e-10  Score=113.74  Aligned_cols=235  Identities=11%  Similarity=0.028  Sum_probs=156.8

Q ss_pred             CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch-hH----HHHHHH
Q 005817          344 QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS-MI----FDLYTK  418 (676)
Q Consensus       344 ~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~-~l----w~~y~~  418 (676)
                      +..+.+...+++++...|+++.+|..+|..+..             .+++++|...|+++++ .|.. ..    |.....
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-------------LAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-------------TTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            356788888888888899888888888887765             5788999999999998 4432 22    322222


Q ss_pred             HHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817          419 FLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ  498 (676)
Q Consensus       419 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~  498 (676)
                      ....                  .|+++.|...|++++..+|.++..|...+.++...|++++|...+++++ ...|.+..
T Consensus        83 ~~~~------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~  143 (272)
T 3u4t_A           83 ILMK------------------KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI-RPTTTDPK  143 (272)
T ss_dssp             HHHH------------------TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC-CSSCCCHH
T ss_pred             HHHH------------------cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh-hcCCCcHH
Confidence            2222                  3678999999999999999999999999999999999999999999999 88999999


Q ss_pred             HHHHHH-HHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH--hh---hHHHHHHHHHHHHhhh
Q 005817          499 LWLLRI-SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFM--NQ---KHYFDKLVEIALISVA  572 (676)
Q Consensus       499 lW~~~i-~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~--~~---~~~~~~~~~~a~~~~~  572 (676)
                      .|...+ .+....           +.+++.+.|++++...|...  ..|......+.  ..   .+.+...+++++....
T Consensus       144 ~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  210 (272)
T 3u4t_A          144 VFYELGQAYYYNK-----------EYVKADSSFVKVLELKPNIY--IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA  210 (272)
T ss_dssp             HHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCccch--HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence            998888 554432           47889999999998776542  22222111111  11   1113334444443321


Q ss_pred             hCCCCCCCc---chHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005817          573 KDGGGESGF---SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE  625 (676)
Q Consensus       573 ~~~~~~~~~---~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE  625 (676)
                      ..... ...   ......+......|++++|...|++++...|.+...+.....+.
T Consensus       211 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  265 (272)
T 3u4t_A          211 PGGAK-YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL  265 (272)
T ss_dssp             GGGGG-GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred             ccccc-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence            11100 000   11112334455677888888888888877777777666555444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.34  E-value=4.4e-10  Score=110.86  Aligned_cols=226  Identities=11%  Similarity=-0.029  Sum_probs=176.0

Q ss_pred             CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhh
Q 005817          190 VPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRW  269 (676)
Q Consensus       190 ~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~  269 (676)
                      ....|...+...+ ..|+++.|..+|++++... .+..+|...+......                              
T Consensus         4 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~------------------------------   51 (258)
T 3uq3_A            4 MADKEKAEGNKFY-KARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEK------------------------------   51 (258)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHT------------------------------
T ss_pred             HHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHc------------------------------
Confidence            3567888888876 6889999999999999999 7777776666543321                              


Q ss_pred             hhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHhcc
Q 005817          270 INENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSS-------FNLRQRFFEIVEATNL  342 (676)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~-------~~~~~~~~~~~~~fe~  342 (676)
                                                           ++++.|...|+++++..|+.       ...+..+..++...  
T Consensus        52 -------------------------------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--   92 (258)
T 3uq3_A           52 -------------------------------------GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL--   92 (258)
T ss_dssp             -------------------------------------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--
T ss_pred             -------------------------------------ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc--
Confidence                                                 25677888999999876654       34454444444332  


Q ss_pred             cCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHH
Q 005817          343 AQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM  421 (676)
Q Consensus       343 ~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~  421 (676)
                       +..+.+...+++++...|.. .       .+..             .+++++|...|++++...|... .|........
T Consensus        93 -~~~~~A~~~~~~a~~~~~~~-~-------~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (258)
T 3uq3_A           93 -GDLKKTIEYYQKSLTEHRTA-D-------ILTK-------------LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF  150 (258)
T ss_dssp             -TCHHHHHHHHHHHHHHCCCH-H-------HHHH-------------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHhcCchh-H-------HHHH-------------HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence             35788999999999988872 1       1211             4678999999999998766533 4443333333


Q ss_pred             HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817          422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL  501 (676)
Q Consensus       422 ~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~  501 (676)
                      .                  .|+++.|...|++++..+|.++.+|...+..+...|++++|...+++++ ...|++...|.
T Consensus       151 ~------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~  211 (258)
T 3uq3_A          151 T------------------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI-EKDPNFVRAYI  211 (258)
T ss_dssp             H------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHH
T ss_pred             H------------------hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCHHHHHHHH
Confidence            2                  4678999999999999999999999999999999999999999999999 88999999999


Q ss_pred             HHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817          502 LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (676)
Q Consensus       502 ~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~  537 (676)
                      ..+......|          +.+++.+.|++++...
T Consensus       212 ~l~~~~~~~g----------~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          212 RKATAQIAVK----------EYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHTT----------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh----------hHHHHHHHHHHHHHhC
Confidence            9998888776          4789999999999865

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.33  E-value=3.7e-10  Score=111.41  Aligned_cols=188  Identities=6%  Similarity=-0.040  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...+...|++++...|.+...|...+..+...| ...+...|++++...|.++.+|...+.... ..|+++.|..+|+++
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~  131 (252)
T 2ho1_A           53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEA  131 (252)
T ss_dssp             TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence            456789999999999999999999999988877 578999999999999999999999999886 688999999999999


Q ss_pred             HH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817          219 LR--VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME  296 (676)
Q Consensus       219 l~--~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (676)
                      +.  ..|.+..+|..++.....                                                          
T Consensus       132 ~~~~~~~~~~~~~~~la~~~~~----------------------------------------------------------  153 (252)
T 2ho1_A          132 SQDTLYPERSRVFENLGLVSLQ----------------------------------------------------------  153 (252)
T ss_dssp             TTCTTCTTHHHHHHHHHHHHHH----------------------------------------------------------
T ss_pred             HhCccCcccHHHHHHHHHHHHH----------------------------------------------------------
Confidence            99  667666666555443221                                                          


Q ss_pred             hhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817          297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT  376 (676)
Q Consensus       297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~  376 (676)
                               .++++.|...|+++++..|.+...+..+..++...   +..+.+...+++++...|+++..|..++..+..
T Consensus       154 ---------~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (252)
T 2ho1_A          154 ---------MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE---REYVPARQYYDLFAQGGGQNARSLLLGIRLAKV  221 (252)
T ss_dssp             ---------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             ---------cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence                     13668899999999988887766665555444332   245666777777777777776666666666543


Q ss_pred             ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh
Q 005817          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM  411 (676)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~  411 (676)
                                   .++.++|...|+++++..|...
T Consensus       222 -------------~g~~~~A~~~~~~~~~~~p~~~  243 (252)
T 2ho1_A          222 -------------FEDRDTAASYGLQLKRLYPGSL  243 (252)
T ss_dssp             -------------TTCHHHHHHHHHHHHHHCTTSH
T ss_pred             -------------ccCHHHHHHHHHHHHHHCCCCH
Confidence                         3556667777777766655443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.33  E-value=1.7e-10  Score=115.33  Aligned_cols=185  Identities=11%  Similarity=0.054  Sum_probs=136.2

Q ss_pred             hhHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 005817          138 SGVARILEIYRLAVMRF----KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAAR  212 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~----p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar  212 (676)
                      .....+...|++++...    |.+...|...+..+...| ...+...|++++..+|.++..|...+.... ..|+++.|.
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~   97 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAY   97 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHH
Confidence            45788999999999874    456788888888888777 578999999999999999999999999886 688999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCC
Q 005817          213 ALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQP  292 (676)
Q Consensus       213 ~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (676)
                      ..|++++...|.+..+|...+.+....                                                     
T Consensus        98 ~~~~~al~~~~~~~~~~~~la~~~~~~-----------------------------------------------------  124 (275)
T 1xnf_A           98 EAFDSVLELDPTYNYAHLNRGIALYYG-----------------------------------------------------  124 (275)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHT-----------------------------------------------------
T ss_pred             HHHHHHHhcCccccHHHHHHHHHHHHh-----------------------------------------------------
Confidence            999999999999888887776654321                                                     


Q ss_pred             cchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005817          293 ENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR  372 (676)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~  372 (676)
                                    ++++.|..+|+++++..|++....... .++..   .+..+.+...+.+++...|.+...|. ++.
T Consensus       125 --------------g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~  185 (275)
T 1xnf_A          125 --------------GRDKLAQDDLLAFYQDDPNDPFRSLWL-YLAEQ---KLDEKQAKEVLKQHFEKSDKEQWGWN-IVE  185 (275)
T ss_dssp             --------------TCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHH---HHCHHHHHHHHHHHHHHSCCCSTHHH-HHH
T ss_pred             --------------ccHHHHHHHHHHHHHhCCCChHHHHHH-HHHHH---hcCHHHHHHHHHHHHhcCCcchHHHH-HHH
Confidence                          256788999999999988875333211 11111   12456777777777777777766654 333


Q ss_pred             HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817          373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP  408 (676)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~  408 (676)
                      ..+.             .+..+.|...|++++...|
T Consensus       186 ~~~~-------------~~~~~~a~~~~~~~~~~~~  208 (275)
T 1xnf_A          186 FYLG-------------NISEQTLMERLKADATDNT  208 (275)
T ss_dssp             HHTT-------------SSCHHHHHHHHHHHCCSHH
T ss_pred             HHHH-------------hcCHHHHHHHHHHHhcccc
Confidence            3322             2334667777777766544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.29  E-value=7.1e-10  Score=106.79  Aligned_cols=166  Identities=9%  Similarity=-0.006  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CCHHHHHHHH
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN-LNVTAARALM  215 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~-~~~~~Ar~~~  215 (676)
                      +....+...|++++...|.+...|...+..+...| ...+...|++++...|.++..|...+.... .. |+++.|...|
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~  100 (225)
T 2vq2_A           22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYF  100 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHH
Confidence            34678899999999999999999999999988877 578999999999999999999999999886 67 8999999999


Q ss_pred             HHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817          216 QNGLR--VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE  293 (676)
Q Consensus       216 ~ral~--~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (676)
                      ++++.  ..|.+..+|..++.....                                                       
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------------------------------  125 (225)
T 2vq2_A          101 DKALADPTYPTPYIANLNKGICSAK-------------------------------------------------------  125 (225)
T ss_dssp             HHHHTSTTCSCHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred             HHHHcCcCCcchHHHHHHHHHHHHH-------------------------------------------------------
Confidence            99999  444445555544433221                                                       


Q ss_pred             chhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCC-CChhhHHHHHH
Q 005817          294 NMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFL-VDPKYWDWLAR  372 (676)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p-~~~~~w~~la~  372 (676)
                                  .++++.|...|+++++..|++...+..+..++...   +..+.+...+++++...| +++..|..++.
T Consensus       126 ------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  190 (225)
T 2vq2_A          126 ------------QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA---GQLGDADYYFKKYQSRVEVLQADDLLLGWK  190 (225)
T ss_dssp             ------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             ------------cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence                        12567788888888888777665555444333322   234455555555555555 55544444444


Q ss_pred             Hh
Q 005817          373 LK  374 (676)
Q Consensus       373 ~~  374 (676)
                      .+
T Consensus       191 ~~  192 (225)
T 2vq2_A          191 IA  192 (225)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.27  E-value=4.2e-10  Score=105.49  Aligned_cols=171  Identities=7%  Similarity=-0.038  Sum_probs=144.4

Q ss_pred             CCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817          156 GDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR  234 (676)
Q Consensus       156 ~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~  234 (676)
                      .+..+|..........| ++.|...|++++..+|+++..|...+.... ..|+++.|...+.+++...|.+..+|...+.
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            46788999999888877 589999999999999999999999999886 6889999999999999999999888877665


Q ss_pred             HHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHH
Q 005817          235 MELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQT  314 (676)
Q Consensus       235 ~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  314 (676)
                      +....                                                                   ++++.|..
T Consensus        82 ~~~~~-------------------------------------------------------------------~~~~~a~~   94 (184)
T 3vtx_A           82 ANFMI-------------------------------------------------------------------DEKQAAID   94 (184)
T ss_dssp             HHHHT-------------------------------------------------------------------TCHHHHHH
T ss_pred             HHHHc-------------------------------------------------------------------CCHHHHHH
Confidence            43321                                                                   24567888


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHH
Q 005817          315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ  394 (676)
Q Consensus       315 iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~  394 (676)
                      .+.+++...|.+...+..+-.++...   +..+.|...++++++..|+++.+|..+|..+..             .++++
T Consensus        95 ~~~~a~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-------------~g~~~  158 (184)
T 3vtx_A           95 ALQRAIALNTVYADAYYKLGLVYDSM---GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-------------KGLRD  158 (184)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCHH
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHh---CCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-------------CCCHH
Confidence            99999999999888877765555443   367899999999999999999999999999876             57899


Q ss_pred             HHHHHHHHHhhccCch
Q 005817          395 KAIQVYEEALKNVPSS  410 (676)
Q Consensus       395 ~A~~~ye~al~~~~~~  410 (676)
                      +|+..|++|++..|..
T Consensus       159 ~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          159 EAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHhCCccC
Confidence            9999999999877753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.26  E-value=2e-10  Score=112.36  Aligned_cols=205  Identities=8%  Similarity=-0.069  Sum_probs=156.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      .|+++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|...+.+....+         
T Consensus        36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~---------  105 (243)
T 2q7f_A           36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL-ELDSSAATAYYGAGNVYVVKE---------  105 (243)
T ss_dssp             ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT---------
T ss_pred             hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCcchHHHHHHHHHHHHhc---------
Confidence            4678899999999999999999999999999999999999999999999 889999999999998888766         


Q ss_pred             hchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHH
Q 005817          521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ  598 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~  598 (676)
                       +.+++.+.|++++...|..  ..+|......+...+  +.+...+++++.. .|..     .......+......|+++
T Consensus       106 -~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A          106 -MYKEAKDMFEKALRAGMEN--GDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NEND-----TEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             -CHHHHHHHHHHHHHHTCCS--HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTC-----HHHHHHHHHHHHHHTCCH
T ss_pred             -cHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcc-----HHHHHHHHHHHHHcCCHH
Confidence             4899999999999877643  334554444443332  4455566666642 3332     233335566678899999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCC
Q 005817          599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSF  670 (676)
Q Consensus       599 ~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~  670 (676)
                      +|...|++++...|.....+...+.+....+      +.+.|..+|+++++..|+++..|.....++..+|.
T Consensus       177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~  242 (243)
T 2q7f_A          177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKE------NREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH  242 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcc------CHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence            9999999999988888888888888887877      88999999999999999999999888888776653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.26  E-value=9.6e-10  Score=111.83  Aligned_cols=184  Identities=6%  Similarity=-0.038  Sum_probs=146.7

Q ss_pred             hhHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCC
Q 005817          308 GLRVLQTIYSGAVEA--LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTS  385 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~--~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~  385 (676)
                      +.+.|...|++.+..  .|++..++..+-.++..-   +..+.+...+++     |+++.++..++..+..         
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~---g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~---------  142 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD---QNPDAALRTLHQ-----GDSLECMAMTVQILLK---------  142 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT---TCHHHHHHHHTT-----CCSHHHHHHHHHHHHH---------
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC---CCHHHHHHHHhC-----CCCHHHHHHHHHHHHH---------
Confidence            567889999998875  588877766554444332   356777777766     8899999999998876         


Q ss_pred             cCcchhHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH
Q 005817          386 EDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE  462 (676)
Q Consensus       386 ~~~~~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~  462 (676)
                          .++++.|...|+++++..|...   +...|+.+...                  .|.++.|..+|++++..+|.++
T Consensus       143 ----~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~------------------~~~~~eA~~~~~~~l~~~p~~~  200 (291)
T 3mkr_A          143 ----LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG------------------GEKLQDAYYIFQEMADKCSPTL  200 (291)
T ss_dssp             ----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC------------------TTHHHHHHHHHHHHHHHSCCCH
T ss_pred             ----CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC------------------chHHHHHHHHHHHHHHhCCCcH
Confidence                5789999999999998877643   22223332221                  3678999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~  540 (676)
                      .+|...+..+...|++++|...+++++ ...|+++..|..++.+....|.         ..+.+.+.+++++..-|..
T Consensus       201 ~~~~~la~~~~~~g~~~eA~~~l~~al-~~~p~~~~~l~~l~~~~~~~g~---------~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          201 LLLNGQAACHMAQGRWEAAEGVLQEAL-DKDSGHPETLINLVVLSQHLGK---------PPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999 8999999999999988887775         3456778899999877654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.25  E-value=4.2e-10  Score=122.96  Aligned_cols=228  Identities=13%  Similarity=0.058  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-C-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-N-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~-~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ...+...++.+....|.+...|...+..+...+ + ..+...|++++...|.++..|...+.... ..|+++.|...|++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence            567778888888889999999999998887776 7 88999999999999999999999999886 67899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      ++...|+ ..+|..++.+....           ..                                         +   
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~-----------~~-----------------------------------------~---  186 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQL-----------QT-----------------------------------------D---  186 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTC-----------CC-----------------------------------------S---
T ss_pred             HHhhCCC-HHHHHHHHHHHHHh-----------cc-----------------------------------------C---
Confidence            9999998 45555444332110           00                                         0   


Q ss_pred             hhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccc
Q 005817          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD  377 (676)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~  377 (676)
                         ......++++.|...|++|++..|++...                                     |..+|..+...
T Consensus       187 ---~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------------------------~~~lg~~~~~~  226 (474)
T 4abn_A          187 ---SGDEHSRHVMDSVRQAKLAVQMDVLDGRS-------------------------------------WYILGNAYLSL  226 (474)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHCTTCHHH-------------------------------------HHHHHHHHHHH
T ss_pred             ---ChhhhhhhHHHHHHHHHHHHHhCCCCHHH-------------------------------------HHHHHHHHHHH
Confidence               00011245566666666666665555444                                     43444333220


Q ss_pred             cCCCCCCCcCcchhHHHHHHHHHHHHhhccC---chh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (676)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~---~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~  453 (676)
                      ....     ....+++++|...|+++++..|   ... .|.........                  .|++++|...|++
T Consensus       227 ~~~~-----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~  283 (474)
T 4abn_A          227 YFNT-----GQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY------------------EESYGEALEGFSQ  283 (474)
T ss_dssp             HHHT-----TCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH------------------TTCHHHHHHHHHH
T ss_pred             HHhh-----ccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH------------------cCCHHHHHHHHHH
Confidence            0000     0003778899999999998777   332 44433333332                  3678889999999


Q ss_pred             HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005817          454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK  487 (676)
Q Consensus       454 al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~  487 (676)
                      |+..+|.++..|...+.++...|++++|...+.+
T Consensus       284 al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9998899888898888888888888887765443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.24  E-value=3.1e-09  Score=105.99  Aligned_cols=224  Identities=13%  Similarity=-0.059  Sum_probs=165.5

Q ss_pred             hhHHHHHHHHHHHHhhccCc--hh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPS--SM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI  464 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~--~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~l  464 (676)
                      .+++++|...|+++++..+.  ..   .|.........                  .|+++.|...|++++..+|.++..
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~al~~~~~~~~~   79 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS------------------LGLRALARNDFSQALAIRPDMPEV   79 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH------------------cccHHHHHHHHHHHHHcCCCcHHH
Confidence            58899999999999987432  11   23222222221                  477999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHH
Q 005817          465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESES  544 (676)
Q Consensus       465 w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~  544 (676)
                      |...+..+...|++++|...+++++ ...|.+...|...+.+....|          +.+++.+.|++++...|......
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~a~~~~~~~~~~~  148 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGIALYYGG----------RDKLAQDDLLAFYQDDPNDPFRS  148 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHhCCCChHHH
Confidence            9999999999999999999999999 889999999999999888776          48999999999999877554333


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC----HHHHHH
Q 005817          545 LWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG----LVLYQN  620 (676)
Q Consensus       545 lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~----~~l~~~  620 (676)
                      +|.... ......+.+...++.++... |..      .+....+......++.++|...+.+++...|..    ...+..
T Consensus       149 ~~~~~~-~~~~~~~~A~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  220 (275)
T 1xnf_A          149 LWLYLA-EQKLDEKQAKEVLKQHFEKS-DKE------QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFY  220 (275)
T ss_dssp             HHHHHH-HHHHCHHHHHHHHHHHHHHS-CCC------STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHhcCHHHHHHHHHHHHhcC-Ccc------hHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHH
Confidence            343322 11122234455555555432 222      222235556667788999999999998765532    457777


Q ss_pred             HHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCch
Q 005817          621 CIELENNLASVGDKDSLVNARKLFESALATYDQNTS  656 (676)
Q Consensus       621 ~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~  656 (676)
                      .+.+....+      +.+.|...|++++...|.+..
T Consensus       221 la~~~~~~g------~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          221 LGKYYLSLG------DLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             HHHHHHHTT------CHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHHcC------CHHHHHHHHHHHHhCCchhHH
Confidence            777777777      899999999999999885543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.23  E-value=1.4e-09  Score=110.73  Aligned_cols=188  Identities=7%  Similarity=-0.004  Sum_probs=135.3

Q ss_pred             hhHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCC
Q 005817          442 HYISHLLTVYEKAEAM--GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS  519 (676)
Q Consensus       442 ~~~~~a~~iye~al~~--~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~  519 (676)
                      +..+.|...+++.+..  +|.++.+++..+..+...|++++|+..+++      |.+...|...+.+..+.|.       
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~-------  145 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR-------  145 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC-------
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC-------
Confidence            5578888889888875  588888888888888899999998877665      7888888888888877763       


Q ss_pred             hhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCH
Q 005817          520 KADILSIFELLKCILTKVSALESESLWLMALKFFMN--QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI  597 (676)
Q Consensus       520 ~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~  597 (676)
                         .+++.+.|++++..-|......+-..++.....  +.+.+..+|++++.. .|..     +.+....+....+.|++
T Consensus       146 ---~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~-----~~~~~~la~~~~~~g~~  216 (291)
T 3mkr_A          146 ---LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPT-----LLLLNGQAACHMAQGRW  216 (291)
T ss_dssp             ---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCC-----HHHHHHHHHHHHHTTCH
T ss_pred             ---HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCc-----HHHHHHHHHHHHHcCCH
Confidence               788888888888765543211221122222221  123445556666543 3332     23333455667789999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccch-HHHHHHHHHHHhhCCCCchH
Q 005817          598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSL-VNARKLFESALATYDQNTSL  657 (676)
Q Consensus       598 ~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~-~~aR~lye~al~~~~~~~~l  657 (676)
                      ++|...|++++...|.+...+...+.+....|      .. +.+..+++++++..|+++.+
T Consensus       217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g------~~~eaa~~~~~~~~~~~P~~~~~  271 (291)
T 3mkr_A          217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLG------KPPEVTNRYLSQLKDAHRSHPFI  271 (291)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHhCCCChHH
Confidence            99999999999999999998888887776776      44 45789999999999987644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.20  E-value=1.4e-09  Score=101.94  Aligned_cols=153  Identities=11%  Similarity=-0.048  Sum_probs=119.6

Q ss_pred             CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHH
Q 005817          344 QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMD  422 (676)
Q Consensus       344 ~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~  422 (676)
                      +..+.|...++++++.+|+++.+|..+|..+..             .+++++|...+++++...|... .|.........
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
T 3vtx_A           19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-------------IGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM   85 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            356778888888888888888888888887765             4678888888888888777644 34333332222


Q ss_pred             HhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817          423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL  502 (676)
Q Consensus       423 ~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~  502 (676)
                                        .++.+.+...+++++..+|.++..|...+..+...|++++|+..+++++ +..|.++..|..
T Consensus        86 ------------------~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~  146 (184)
T 3vtx_A           86 ------------------IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI-SIKPGFIRAYQS  146 (184)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHH
T ss_pred             ------------------cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH-HhcchhhhHHHH
Confidence                              2557888888888888888888888888888888899999999999988 788888888888


Q ss_pred             HHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          503 RISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       503 ~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      .+......|          +.+++.+.|++|++.-|
T Consensus       147 lg~~~~~~g----------~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          147 IGLAYEGKG----------LRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHTT----------CHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHCC----------CHHHHHHHHHHHHhCCc
Confidence            888887766          37888888888887654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=99.18  E-value=5.1e-10  Score=97.35  Aligned_cols=116  Identities=16%  Similarity=0.177  Sum_probs=93.8

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCC--------H
Q 005817           87 RPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGD--------I  158 (676)
Q Consensus        87 ~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~--------~  158 (676)
                      -.+.+..+|..|+.-+...+                         ....| +...+++.+|+||+...|-+        +
T Consensus         8 ~~p~~yd~W~~yl~llE~~g-------------------------~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI   61 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNS-------------------------VPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESFA   61 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHT-------------------------CSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcC-------------------------CCchh-hHHHHHHHHHHHHHHcCCccccccHHHHH
Confidence            45778999999999775311                         01133 56789999999999999864        4


Q ss_pred             HHHHHHHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005817          159 ELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW  229 (676)
Q Consensus       159 ~lW~~y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW  229 (676)
                      .+|+.|+.|..-...++++.+|..|+..|..-..+|++||.||+ .+||+++||+++.+|+..+|...++.
T Consensus        62 ~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEi-Rqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           62 RIQVRFAELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFEL-SQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCCcHHHH
Confidence            68888888854434689999999999998888999999999998 68899999999999999999875543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.15  E-value=3.2e-09  Score=115.86  Aligned_cols=185  Identities=10%  Similarity=-0.036  Sum_probs=139.3

Q ss_pred             hh-HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817          308 GL-RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE  386 (676)
Q Consensus       308 ~~-~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~  386 (676)
                      ++ +.|...|++|++..|++...|..+-.++...   +..+.|...++++++..|+ ..+|..+|..+.....    ...
T Consensus       117 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~----~~~  188 (474)
T 4abn_A          117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK---GDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQT----DSG  188 (474)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCC----SCH
T ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhcc----CCh
Confidence            55 6788888888888888877777665555443   3567888888888888888 6778888887754100    000


Q ss_pred             CcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC---CcH
Q 005817          387 DIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC---LTE  462 (676)
Q Consensus       387 ~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p---~~~  462 (676)
                      .+..+++++|...|+++++..|... .|..........+.....+          .+++++|...|++|+..+|   .++
T Consensus       189 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~----------~g~~~~A~~~~~~al~~~p~~~~~~  258 (474)
T 4abn_A          189 DEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQN----------PKISQQALSAYAQAEKVDRKASSNP  258 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHHHCGGGGGCH
T ss_pred             hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccc----------cchHHHHHHHHHHHHHhCCCcccCH
Confidence            1112889999999999999888654 5554444443321100100          3779999999999999999   899


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (676)
                      ..|...+..+...|++++|...+++++ +..|++...|.....+....+
T Consensus       259 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~a~~~l~~~~~~lg  306 (474)
T 4abn_A          259 DLHLNRATLHKYEESYGEALEGFSQAA-ALDPAWPEPQQREQQLLEFLS  306 (474)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 899999999998887776654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.14  E-value=1.9e-08  Score=97.67  Aligned_cols=152  Identities=5%  Similarity=-0.081  Sum_probs=108.5

Q ss_pred             CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005817          155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHP-KVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY  232 (676)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P-~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y  232 (676)
                      |.+...|...+......| +..+...|++++...| .++..|...+.... ..|+++.|...|++++...|.+..+|..+
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            456678888888777776 5789999999999998 88888888877775 68899999999999999999887777766


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHH
Q 005817          233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL  312 (676)
Q Consensus       233 ~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (676)
                      +......                                                                   ++++.|
T Consensus        83 ~~~~~~~-------------------------------------------------------------------~~~~~A   95 (228)
T 4i17_A           83 SAAYRDM-------------------------------------------------------------------KNNQEY   95 (228)
T ss_dssp             HHHHHHT-------------------------------------------------------------------TCHHHH
T ss_pred             HHHHHHc-------------------------------------------------------------------ccHHHH
Confidence            6553321                                                                   256788


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHh----cccCcHHHHHHHHHHHHhcCCC--ChhhHHHHHHHh
Q 005817          313 QTIYSGAVEALPSSFNLRQRFFEIVEAT----NLAQSDDMHDKILSDMQRDFLV--DPKYWDWLARLK  374 (676)
Q Consensus       313 ~~iy~~Al~~~p~~~~~~~~~~~~~~~f----e~~~~~~~a~~il~~~~~~~p~--~~~~w~~la~~~  374 (676)
                      ...|+++++..|++..++..+...+...    ...+..+.+...++++++..|+  ++.+|..++..+
T Consensus        96 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           96 IATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            9999999999998875543332222211    1123455666666666666666  666666666655

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.11  E-value=3.9e-06  Score=91.61  Aligned_cols=384  Identities=10%  Similarity=-0.084  Sum_probs=226.9

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----cc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CCCHHHHHHH
Q 005817          144 LEIYRLAVMRFKGDIELWFKYMEFCRQ----RK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH----NLNVTAARAL  214 (676)
Q Consensus       144 ~~iyeral~~~p~~~~lW~~y~~~~~~----~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~----~~~~~~Ar~~  214 (676)
                      ...++++..  +++......+..+...    .+ ..++...|++++..  .++..+...+.... .    .++.+.|...
T Consensus        27 ~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~  101 (490)
T 2xm6_A           27 LEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYM-NGEGVPQDYAQAVIW  101 (490)
T ss_dssp             HHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence            344555543  6788888888877665    23 46789999999886  56888888888875 4    6799999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc
Q 005817          215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN  294 (676)
Q Consensus       215 ~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (676)
                      |++++..  .++..+..+..+...            +...                                        
T Consensus       102 ~~~a~~~--~~~~a~~~Lg~~y~~------------g~g~----------------------------------------  127 (490)
T 2xm6_A          102 YKKAALK--GLPQAQQNLGVMYHE------------GNGV----------------------------------------  127 (490)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHH------------TSSS----------------------------------------
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHc------------CCCC----------------------------------------
Confidence            9999875  355665555443221            0000                                        


Q ss_pred             hhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh-cccCcHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 005817          295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARL  373 (676)
Q Consensus       295 ~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~  373 (676)
                                 .++++.|...|++|.+..  +...+..+-.++..- ......+.+...++++...  .++..+..++..
T Consensus       128 -----------~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~  192 (490)
T 2xm6_A          128 -----------KVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYM  192 (490)
T ss_dssp             -----------CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             -----------CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence                       025567888888887752  334444444444321 1123566777888887765  567788888887


Q ss_pred             hccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817          374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (676)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~  453 (676)
                      +..+..         +.++.++|...|+++++.-+... +...........   .           ..++.++|...|++
T Consensus       193 y~~g~g---------~~~~~~~A~~~~~~a~~~~~~~a-~~~lg~~y~~g~---g-----------~~~~~~~A~~~~~~  248 (490)
T 2xm6_A          193 YSRGLG---------VERNDAISAQWYRKSATSGDELG-QLHLADMYYFGI---G-----------VTQDYTQSRVLFSQ  248 (490)
T ss_dssp             HHHTSS---------SCCCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHTS---S-----------SCCCHHHHHHHHHH
T ss_pred             HhcCCC---------CCcCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHcCC---C-----------CCCCHHHHHHHHHH
Confidence            765311         13567888888888886532211 111111111100   0           12567888888888


Q ss_pred             HHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHH
Q 005817          454 AEAMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFEL  529 (676)
Q Consensus       454 al~~~p~~~~lw~~~~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~  529 (676)
                      +...  .++..+...+.++..    .+++++|...+++++ ..  .++..+.....+...... .  .  ..+.+++.+.
T Consensus       249 a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~-~~--~~~~a~~~Lg~~y~~~~~-g--~--~~~~~~A~~~  318 (490)
T 2xm6_A          249 SAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA-EQ--GNSDGQYYLAHLYDKGAE-G--V--AKNREQAISW  318 (490)
T ss_dssp             HHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH-TT--TCHHHHHHHHHHHHHCBT-T--B--CCCHHHHHHH
T ss_pred             HHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-Hc--CCHHHHHHHHHHHHcCCC-C--C--cCCHHHHHHH
Confidence            8876  346667777777777    788888888888888 43  445556665555544300 0  0  0257888888


Q ss_pred             HHHHHhhcChhhhHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHH----hcCHHHH
Q 005817          530 LKCILTKVSALESESLWLMALKFFMN-----QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ----KDGIQQA  600 (676)
Q Consensus       530 f~~Al~~~~~~~~~~lW~~~l~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~----~g~~~~A  600 (676)
                      |++|+..-++.    .+......+..     ..+.+...++++...   ..     +.....+..+...    .+++++|
T Consensus       319 ~~~a~~~~~~~----a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~-----~~a~~~Lg~~y~~g~g~~~~~~~A  386 (490)
T 2xm6_A          319 YTKSAEQGDAT----AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GE-----KAAQFNLGNALLQGKGVKKDEQQA  386 (490)
T ss_dssp             HHHHHHTTCHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TC-----HHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHhcCCHH----HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CC-----HHHHHHHHHHHHcCCCCCCCHHHH
Confidence            88888753322    12111111211     112334445554431   11     1222133444444    5788889


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhh-ccCCCCccchHHHHHHHHHHHhhCC
Q 005817          601 REMYKRFLALPRPGLVLYQNCIELENN-LASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       601 r~iy~~al~~~p~~~~l~~~~i~lE~~-~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      ...|++++...+  ...+.....+... .+   ...+.+.|..+|++|++..|
T Consensus       387 ~~~~~~A~~~~~--~~a~~~Lg~~y~~g~g---~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          387 AIWMRKAAEQGL--SAAQVQLGEIYYYGLG---VERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHTSS---SCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCC--HHHHHHHHHHHHcCCC---CCCCHHHHHHHHHHHHHCCC
Confidence            999998887543  3333333333222 21   12278889999999888874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.09  E-value=1.4e-06  Score=95.09  Aligned_cols=353  Identities=9%  Similarity=-0.025  Sum_probs=233.4

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCCHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQ----RK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH---NLNVTA  210 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~----~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~---~~~~~~  210 (676)
                      ....+...|++++..  ++...+.....+...    .+ ..++...|+++...  .++..+...+......   .++.+.
T Consensus        58 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~  133 (490)
T 2xm6_A           58 DLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAE  133 (490)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            357789999999976  778888888888766    33 46889999999875  5788888888887531   569999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817          211 ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS  290 (676)
Q Consensus       211 Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (676)
                      |...|++++..  .++..+..+..+...            +...                                    
T Consensus       134 A~~~~~~a~~~--~~~~a~~~Lg~~y~~------------g~g~------------------------------------  163 (490)
T 2xm6_A          134 SVKWFRLAAEQ--GRDSGQQSMGDAYFE------------GDGV------------------------------------  163 (490)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHH------------TSSS------------------------------------
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHHc------------CCCC------------------------------------
Confidence            99999999875  456666555544321            0000                                    


Q ss_pred             CCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh-cccCcHHHHHHHHHHHHhcCCCChhhHHH
Q 005817          291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDW  369 (676)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~a~~il~~~~~~~p~~~~~w~~  369 (676)
                                     .++++.|...|++|++.  ++...+..+-.++..- ......+.+...+.++...  .++..+..
T Consensus       164 ---------------~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~  224 (490)
T 2xm6_A          164 ---------------TRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLH  224 (490)
T ss_dssp             ---------------CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             ---------------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHH
Confidence                           02567899999999886  3445555554454431 1123577888888888764  56778888


Q ss_pred             HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHH
Q 005817          370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT  449 (676)
Q Consensus       370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~  449 (676)
                      ++..+..+..         ..+++++|...|+++++.-+..... ..........   .           ..++.++|..
T Consensus       225 lg~~y~~g~g---------~~~~~~~A~~~~~~a~~~~~~~a~~-~lg~~y~~g~---~-----------~~~d~~~A~~  280 (490)
T 2xm6_A          225 LADMYYFGIG---------VTQDYTQSRVLFSQSAEQGNSIAQF-RLGYILEQGL---A-----------GAKEPLKALE  280 (490)
T ss_dssp             HHHHHHHTSS---------SCCCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHTT---T-----------SSCCHHHHHH
T ss_pred             HHHHHHcCCC---------CCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHCCC---C-----------CCCCHHHHHH
Confidence            8988865311         1467899999999998763322211 1111111110   0           1356899999


Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchH
Q 005817          450 VYEKAEAMGCLTEDIAHRYVTLYLQL-----GKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL  524 (676)
Q Consensus       450 iye~al~~~p~~~~lw~~~~~l~~~~-----~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~  524 (676)
                      .|+++...  .+++.+...+.++...     +++++|...+++++ ..  .++..+.....+....+.       ..+.+
T Consensus       281 ~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~-~~--~~~~a~~~lg~~y~~~g~-------~~~~~  348 (490)
T 2xm6_A          281 WYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA-EQ--GDATAQANLGAIYFRLGS-------EEEHK  348 (490)
T ss_dssp             HHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH-HT--TCHHHHHHHHHHHHHSCC-------HHHHH
T ss_pred             HHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHhCCC-------cccHH
Confidence            99999876  4677888888888887     89999999999999 53  445666666666654331       12578


Q ss_pred             HHHHHHHHHHhhcChhhhHHHHHHHHHHHHh------hhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHH----h
Q 005817          525 SIFELLKCILTKVSALESESLWLMALKFFMN------QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ----K  594 (676)
Q Consensus       525 ~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~----~  594 (676)
                      ++.+.|++|+..-.+    ..|......+..      ..+.+...+++|...   ..     +............    .
T Consensus       349 ~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~-----~~a~~~Lg~~y~~g~g~~  416 (490)
T 2xm6_A          349 KAVEWFRKAAAKGEK----AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ---GL-----SAAQVQLGEIYYYGLGVE  416 (490)
T ss_dssp             HHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TC-----HHHHHHHHHHHHHTSSSC
T ss_pred             HHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC---CC-----HHHHHHHHHHHHcCCCCC
Confidence            899999999875222    223322222322      113445556665532   11     1222133444545    6


Q ss_pred             cCHHHHHHHHHHHHcCCC
Q 005817          595 DGIQQAREMYKRFLALPR  612 (676)
Q Consensus       595 g~~~~Ar~iy~~al~~~p  612 (676)
                      ++.++|...|++++...|
T Consensus       417 ~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          417 RDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             CCHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHCCC
Confidence            899999999999998764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=99.09  E-value=6.4e-10  Score=96.77  Aligned_cols=128  Identities=13%  Similarity=0.157  Sum_probs=95.7

Q ss_pred             CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHHHHHHHHHHHhcCccccccCCCCC
Q 005817          360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELP  437 (676)
Q Consensus       360 ~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~  437 (676)
                      .|.+++.|..++...-+.+++.      . -+-+++.+++|++|+..+|..+  .|..|+.++.......          
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~------~-d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~----------   71 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPL------S-DALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK----------   71 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSC------C-HHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH----------
T ss_pred             CCCCHHHHHHHHHHHHHcCCCc------h-hhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH----------
Confidence            5888999888887764432110      0 1456889999999999998643  5666665555432110          


Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817          438 SHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (676)
Q Consensus       438 ~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (676)
                        ..+++++||.+|+.|+..+..-..+|+.||+|+.++|+...|++++.+|+ +.+|....+....+.-.
T Consensus        72 --ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~Ai-G~~~k~~~~le~a~~nl  138 (161)
T 4h7y_A           72 --AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAV-ERGAVPLEMLEIALRNL  138 (161)
T ss_dssp             --HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBCHHHHHHHHHHH
T ss_pred             --HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh-ccCCCcHHHHHHHHHhh
Confidence              12568899999999988766669999999999999999999999999999 88998877766655433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.08  E-value=3.1e-08  Score=96.20  Aligned_cols=211  Identities=10%  Similarity=-0.026  Sum_probs=144.3

Q ss_pred             CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC-chh-HHHHHHHHHHHHhcCccccccCCCCCh
Q 005817          361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP-SSM-IFDLYTKFLMDMIAPKKEETRDSELPS  438 (676)
Q Consensus       361 p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~-~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~  438 (676)
                      |.++..|...|..++.             .+++++|...|+++++..| ... .|.........                
T Consensus         4 ~~~~~~~~~~g~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------   54 (228)
T 4i17_A            4 TTDPNQLKNEGNDALN-------------AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN----------------   54 (228)
T ss_dssp             CCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----------------
T ss_pred             ccCHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----------------
Confidence            4567788888888876             5789999999999999886 433 33221111111                


Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHH-------HHHHHHHHHHhc
Q 005817          439 HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL-------WLLRISVEIRCV  511 (676)
Q Consensus       439 ~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l-------W~~~i~l~~~~~  511 (676)
                        .|++++|...|++++..+|.++..|...+..+...|++++|...+++++ +..|++..+       |..........+
T Consensus        55 --~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~~~~  131 (228)
T 4i17_A           55 --IKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI-KAVPGNATIEKLYAIYYLKEGQKFQQAG  131 (228)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             --hhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHhHHHHHhc
Confidence              4679999999999999999999999999999999999999999999999 889998854       555555555544


Q ss_pred             cccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHH-HH
Q 005817          512 TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAII-NL  590 (676)
Q Consensus       512 ~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~-~~  590 (676)
                                +.+++.+.|++|+...|.+-....|......+....   ...++++.. +.+.       ... .|. ..
T Consensus       132 ----------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~---~~~~~~a~~-~~~~-------~~~-~~~~~~  189 (228)
T 4i17_A          132 ----------NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG---ADVLRKATP-LASS-------NKE-KYASEK  189 (228)
T ss_dssp             ----------CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH---HHHHHHHGG-GTTT-------CHH-HHHHHH
T ss_pred             ----------cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH---HHHHHHHHh-cccC-------CHH-HHHHHH
Confidence                      589999999999987665101234443222221111   122333221 1111       122 232 23


Q ss_pred             HHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005817          591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE  625 (676)
Q Consensus       591 ~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE  625 (676)
                      ....+.+++|...|++++...|.+.........+.
T Consensus       190 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          190 AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            44466788888888888888888777665555543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.08  E-value=5.8e-09  Score=110.25  Aligned_cols=293  Identities=8%  Similarity=-0.093  Sum_probs=185.8

Q ss_pred             hHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcc-CchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCC
Q 005817          139 GVARILEIYRLAVMRFKGDI----ELWFKYMEFCRQRK-NGRMKKVLAQVIRF------HPKVPGVWIYAAAWEFDHNLN  207 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~----~lW~~y~~~~~~~~-~~~~~~~~~ral~~------~P~~~~lW~~~a~~e~~~~~~  207 (676)
                      ....+...|++++...|.+.    .+|...+......| +..+...|++++..      .|....+|...+.... ..|+
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~  102 (406)
T 3sf4_A           24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-VLGN  102 (406)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HcCC
Confidence            36788999999999999984    57777777777776 57899999999887      3344667888888775 6889


Q ss_pred             HHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCC
Q 005817          208 VTAARALMQNGLRVCPTSE------ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD  281 (676)
Q Consensus       208 ~~~Ar~~~~ral~~~p~~~------~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (676)
                      ++.|...+++++...|...      .+|...+.+....++           ....    .           .+.....+ 
T Consensus       103 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~~----~-----------~~~~~~~~-  155 (406)
T 3sf4_A          103 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK-----------SFGC----P-----------GPQDVGEF-  155 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-----------TCC----------------------CCC-
T ss_pred             HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC-----------cccc----c-----------ccchhhhh-
Confidence            9999999999999887421      133333322222111           0000    0           00000000 


Q ss_pred             CCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC---CCchh---HHHHHHHHHHHhcccCcHHHHHHHHHH
Q 005817          282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL---PSSFN---LRQRFFEIVEATNLAQSDDMHDKILSD  355 (676)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~---p~~~~---~~~~~~~~~~~fe~~~~~~~a~~il~~  355 (676)
                                     ...     ....++.|...|++++...   ++...   .+..+..++..   .+..+.+...+++
T Consensus       156 ---------------~~~-----a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~  212 (406)
T 3sf4_A          156 ---------------PEE-----VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL---LGNFRDAVIAHEQ  212 (406)
T ss_dssp             ---------------CHH-----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HTBHHHHHHHHHH
T ss_pred             ---------------hhh-----HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH---ccCHHHHHHHHHH
Confidence                           000     0124677888888887652   22222   23222222222   2467788889998


Q ss_pred             HHhcCCCChh------hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhc
Q 005817          356 MQRDFLVDPK------YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIA  425 (676)
Q Consensus       356 ~~~~~p~~~~------~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~  425 (676)
                      ++...|..+.      ++..+|..+..             .+++++|...|++++...+...    ....+...-.-.. 
T Consensus       213 al~~~~~~~~~~~~~~~~~~la~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-  278 (406)
T 3sf4_A          213 RLLIAKEFGDKAAERRAYSNLGNAYIF-------------LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-  278 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH-
Confidence            8887665544      67788888765             5789999999999998654321    1111111111111 


Q ss_pred             CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-----
Q 005817          426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS-----  494 (676)
Q Consensus       426 ~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P-----  494 (676)
                                    ..|++++|...|++++...+..      ...+...+.++...|++++|...+++++ ...+     
T Consensus       279 --------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~  343 (406)
T 3sf4_A          279 --------------LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-EISREVGDK  343 (406)
T ss_dssp             --------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCH
T ss_pred             --------------HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhcCC
Confidence                          2477899999999998763322      5678889999999999999999999998 5432     


Q ss_pred             -ChHHHHHHHHHHHHHhc
Q 005817          495 -DSVQLWLLRISVEIRCV  511 (676)
Q Consensus       495 -~~~~lW~~~i~l~~~~~  511 (676)
                       .....+...+.+....|
T Consensus       344 ~~~~~~~~~l~~~~~~~g  361 (406)
T 3sf4_A          344 SGELTARLNLSDLQMVLG  361 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHhh
Confidence             22445555555555444

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.07  E-value=3.4e-09  Score=112.75  Aligned_cols=270  Identities=8%  Similarity=-0.070  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcc-CchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCCH
Q 005817          140 VARILEIYRLAVMRFKGDI----ELWFKYMEFCRQRK-NGRMKKVLAQVIRF------HPKVPGVWIYAAAWEFDHNLNV  208 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~----~lW~~y~~~~~~~~-~~~~~~~~~ral~~------~P~~~~lW~~~a~~e~~~~~~~  208 (676)
                      ...+...|++++...|++.    .+|...+..+...| +..+...|++++..      .|....+|...+.... ..|++
T Consensus        64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~  142 (411)
T 4a1s_A           64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK-VMGRF  142 (411)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCH
T ss_pred             HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-HCCCH
Confidence            5788999999999999987    46777777777766 57899999999988      5666788888888876 68899


Q ss_pred             HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCC
Q 005817          209 TAARALMQNGLRVCP------TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDG  282 (676)
Q Consensus       209 ~~Ar~~~~ral~~~p------~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (676)
                      +.|...|++++...+      ....+|...+.+....++...  ....+.                           +  
T Consensus       143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--~~~~~~---------------------------~--  191 (411)
T 4a1s_A          143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG--QRNPGK---------------------------F--  191 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH--HHSTTC---------------------------C--
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccc--cccchh---------------------------h--
Confidence            999999999998843      223344444443332221100  000000                           0  


Q ss_pred             CCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC---CCch---hHHHHHHHHHHHhcccCcHHHHHHHHHHH
Q 005817          283 EVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL---PSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDM  356 (676)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~---p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~~  356 (676)
                                    ....     ...++.|...|+++++..   ++..   ..+..+..++.   ..+..+.+...++++
T Consensus       192 --------------~~~a-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a  249 (411)
T 4a1s_A          192 --------------GDDV-----KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYY---LLGDFQAAIEHHQER  249 (411)
T ss_dssp             --------------CHHH-----HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHH
T ss_pred             --------------hhhh-----hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HcCChHHHHHHHHHH
Confidence                          0000     124677888888887643   2211   22322222222   224677888899988


Q ss_pred             HhcCCCChh------hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-------HHHHHHHHHHHH
Q 005817          357 QRDFLVDPK------YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-------IFDLYTKFLMDM  423 (676)
Q Consensus       357 ~~~~p~~~~------~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-------lw~~y~~~~~~~  423 (676)
                      +...|....      ++..++..+..             .+++++|...|++++...+...       .+........  
T Consensus       250 l~~~~~~~~~~~~~~~~~~la~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--  314 (411)
T 4a1s_A          250 LRIAREFGDRAAERRANSNLGNSHIF-------------LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT--  314 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHT-------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHH-------------CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--
Confidence            887765444      67788888765             5789999999999998655321       2222222221  


Q ss_pred             hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817          424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL------TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD  495 (676)
Q Consensus       424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~------~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~  495 (676)
                                      ..|++++|...|++++...+.      ....+...+.++...|++++|...+++++ ...+.
T Consensus       315 ----------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~  375 (411)
T 4a1s_A          315 ----------------LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL-QLAXX  375 (411)
T ss_dssp             ----------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCH
T ss_pred             ----------------HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHhh
Confidence                            147789999999999876322      24578889999999999999999999999 65554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.07  E-value=7.5e-09  Score=105.80  Aligned_cols=136  Identities=9%  Similarity=-0.065  Sum_probs=93.3

Q ss_pred             hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccccccCCCCChh
Q 005817          364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSELPSH  439 (676)
Q Consensus       364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~d~~~~~~~~~  439 (676)
                      ..++..++..+..             .++++.|...|+++++..+...    ....+...-.-.               .
T Consensus       183 ~~~~~~l~~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~---------------~  234 (338)
T 3ro2_A          183 GRAFGNLGNTHYL-------------LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY---------------I  234 (338)
T ss_dssp             HHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------H
T ss_pred             HHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH---------------H
Confidence            3456677777654             5789999999999998654321    111111111111               0


Q ss_pred             hhhhHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------hHHHHHHHHHHH
Q 005817          440 VEHYISHLLTVYEKAEAMGCLT------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------SVQLWLLRISVE  507 (676)
Q Consensus       440 ~~~~~~~a~~iye~al~~~p~~------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------~~~lW~~~i~l~  507 (676)
                      ..|+++.|...|++++...+..      ...+...+..+...|++++|...+++++ ...|.      ....|...+.+.
T Consensus       235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~la~~~  313 (338)
T 3ro2_A          235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQELKDRIGEGRACWSLGNAY  313 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHH
Confidence            2467899999999998764332      5678889999999999999999999998 54443      245666777777


Q ss_pred             HHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          508 IRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       508 ~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      ...|          +.+++.+.|++++...+
T Consensus       314 ~~~g----------~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          314 TALG----------NHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHT----------CHHHHHHHHHHHHHC--
T ss_pred             HHcC----------ChHHHHHHHHHHHHHHH
Confidence            7666          47889899999987543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.07  E-value=5.8e-09  Score=106.66  Aligned_cols=277  Identities=9%  Similarity=-0.060  Sum_probs=173.5

Q ss_pred             hHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcc-CchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCC
Q 005817          139 GVARILEIYRLAVMRFKGDI----ELWFKYMEFCRQRK-NGRMKKVLAQVIRF------HPKVPGVWIYAAAWEFDHNLN  207 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~----~lW~~y~~~~~~~~-~~~~~~~~~ral~~------~P~~~~lW~~~a~~e~~~~~~  207 (676)
                      ....+...|++++...|++.    .+|...+......| +..+...|++++..      .|....+|...+.... ..|+
T Consensus        20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~   98 (338)
T 3ro2_A           20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-VLGN   98 (338)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH-HccC
Confidence            36788999999999999984    56777777777766 57889999999887      4445678888888875 6889


Q ss_pred             HHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCC
Q 005817          208 VTAARALMQNGLRVCPTSEE------LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD  281 (676)
Q Consensus       208 ~~~Ar~~~~ral~~~p~~~~------lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (676)
                      ++.|...|++++...|....      ++...+.+....           +.....    +                 ...
T Consensus        99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~----~-----------------~~~  146 (338)
T 3ro2_A           99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-----------GKSFGC----P-----------------GPQ  146 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------HHTSSS----S-----------------SCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc-----------Cccccc----c-----------------hhh
Confidence            99999999999998764321      222222222111           100000    0                 000


Q ss_pred             CCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC---CCch---hHHHHHHHHHHHhcccCcHHHHHHHHHH
Q 005817          282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL---PSSF---NLRQRFFEIVEATNLAQSDDMHDKILSD  355 (676)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~---p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~  355 (676)
                          +.      +......     ...++.|...|++++...   ++..   ..+..+..++.   ..+..+.+...+++
T Consensus       147 ----~~------~~~~~~a-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~  208 (338)
T 3ro2_A          147 ----DT------GEFPEDV-----RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY---LLGNFRDAVIAHEQ  208 (338)
T ss_dssp             --------------CCHHH-----HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHH
T ss_pred             ----hh------hhhhhhH-----HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHH
Confidence                00      0000000     124677788888877642   2221   12222222222   22356788888888


Q ss_pred             HHhcCCCChh------hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhc
Q 005817          356 MQRDFLVDPK------YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIA  425 (676)
Q Consensus       356 ~~~~~p~~~~------~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~  425 (676)
                      ++...|....      ++..++..+..             .+++++|...|++++...+...    ....+...-.-.. 
T Consensus       209 a~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-  274 (338)
T 3ro2_A          209 RLLIAKEFGDKAAERRAYSNLGNAYIF-------------LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-  274 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-
Confidence            8776554333      67777877765             5789999999999998654321    1111111111110 


Q ss_pred             CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817          426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL------TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD  495 (676)
Q Consensus       426 ~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~------~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~  495 (676)
                                    ..|++++|...|++++...+.      ....+...+..+...|++++|...+++++ ...+.
T Consensus       275 --------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~  335 (338)
T 3ro2_A          275 --------------LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-EISRE  335 (338)
T ss_dssp             --------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HC---
T ss_pred             --------------HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHh
Confidence                          147789999999999876332      24578889999999999999999999999 65543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.06  E-value=8.5e-09  Score=108.99  Aligned_cols=271  Identities=7%  Similarity=-0.110  Sum_probs=176.2

Q ss_pred             CHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---H--
Q 005817          157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP----GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS---E--  226 (676)
Q Consensus       157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~----~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~---~--  226 (676)
                      ....|...+..+...| +..+...|++++...|.++    .+|...+.... ..|+++.|...|++++...+..   +  
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            4555666666666666 5789999999999999985    57777787776 6889999999999998774321   1  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHH
Q 005817          227 -ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFR  305 (676)
Q Consensus       227 -~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (676)
                       .+|...+....                                                                   .
T Consensus        87 ~~~~~~la~~~~-------------------------------------------------------------------~   99 (406)
T 3sf4_A           87 AKASGNLGNTLK-------------------------------------------------------------------V   99 (406)
T ss_dssp             HHHHHHHHHHHH-------------------------------------------------------------------H
T ss_pred             HHHHHHHHHHHH-------------------------------------------------------------------H
Confidence             12221111111                                                                   0


Q ss_pred             HhhhHHHHHHHHHHHhcCCCch------hHHHHHHHHHHHhcccCc--------------------HHHHHHHHHHHHhc
Q 005817          306 EQGLRVLQTIYSGAVEALPSSF------NLRQRFFEIVEATNLAQS--------------------DDMHDKILSDMQRD  359 (676)
Q Consensus       306 ~~~~~~a~~iy~~Al~~~p~~~------~~~~~~~~~~~~fe~~~~--------------------~~~a~~il~~~~~~  359 (676)
                      .++++.|...|+++++..|...      ..+..+-.++...   +.                    .+.+...+.+++..
T Consensus       100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  176 (406)
T 3sf4_A          100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK---GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL  176 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc---CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            1345667777777776543321      1222222222211   12                    45666666666554


Q ss_pred             C------CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccc
Q 005817          360 F------LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKE  429 (676)
Q Consensus       360 ~------p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~  429 (676)
                      .      |....++..+|..+..             .++++.|...|+++++..+...    ....|...-.-..     
T Consensus       177 ~~~~~~~~~~~~~~~~la~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-----  238 (406)
T 3sf4_A          177 VTALGDRAAQGRAFGNLGNTHYL-------------LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-----  238 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH-------------HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred             HHhccCcHHHHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-----
Confidence            2      2224467777877765             5789999999999998654321    1112222111111     


Q ss_pred             cccCCCCChhhhhhHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------hH
Q 005817          430 ETRDSELPSHVEHYISHLLTVYEKAEAMGCLT------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------SV  497 (676)
Q Consensus       430 d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------~~  497 (676)
                                ..|++++|...|++++...+..      ...+...+..+...|++++|...+++++ ...|.      ..
T Consensus       239 ----------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~  307 (406)
T 3sf4_A          239 ----------FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQELNDRIGEG  307 (406)
T ss_dssp             ----------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHH
T ss_pred             ----------HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHhcCCcHHHH
Confidence                      1477899999999998764433      5678889999999999999999999998 54332      25


Q ss_pred             HHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817          498 QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (676)
Q Consensus       498 ~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~  537 (676)
                      ..|...+.+....|          +.+++.+.|++|+...
T Consensus       308 ~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~  337 (406)
T 3sf4_A          308 RACWSLGNAYTALG----------NHDQAMHFAEKHLEIS  337 (406)
T ss_dssp             HHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHH
Confidence            67777777777666          4789999999998753

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.06  E-value=2.7e-09  Score=113.53  Aligned_cols=268  Identities=7%  Similarity=-0.098  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHcc-CchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCCHHHH
Q 005817          161 WFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP----GVWIYAAAWEFDHNLNVTAARALMQNGLRVC------PTSEELW  229 (676)
Q Consensus       161 W~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~----~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~------p~~~~lW  229 (676)
                      +...+..+...| +..+...|++++...|.++    .+|...+.... ..|+++.|...|++++...      |....+|
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            334444444555 5789999999999999987    47777887775 6789999999999999873      2222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhh
Q 005817          230 VEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGL  309 (676)
Q Consensus       230 ~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (676)
                      ...+.+...                                                                   .+++
T Consensus       130 ~~l~~~~~~-------------------------------------------------------------------~g~~  142 (411)
T 4a1s_A          130 GNLGNTLKV-------------------------------------------------------------------MGRF  142 (411)
T ss_dssp             HHHHHHHHH-------------------------------------------------------------------TTCH
T ss_pred             HHHHHHHHH-------------------------------------------------------------------CCCH
Confidence            222222111                                                                   1245


Q ss_pred             HHHHHHHHHHHhcC------CCchhHHHHHHHHHHHhcccCc-----------------HHHHHHHHHHHHhcC------
Q 005817          310 RVLQTIYSGAVEAL------PSSFNLRQRFFEIVEATNLAQS-----------------DDMHDKILSDMQRDF------  360 (676)
Q Consensus       310 ~~a~~iy~~Al~~~------p~~~~~~~~~~~~~~~fe~~~~-----------------~~~a~~il~~~~~~~------  360 (676)
                      +.|...|+++++..      |.....+..+..++...   +.                 .+.+...+.+++...      
T Consensus       143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~  219 (411)
T 4a1s_A          143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK---GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR  219 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc---CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence            66666777766552      22222333322222221   12                 455666666655433      


Q ss_pred             CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHH--HHHHHHHHHhcCccccccCCCC
Q 005817          361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFD--LYTKFLMDMIAPKKEETRDSEL  436 (676)
Q Consensus       361 p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~--~y~~~~~~~~~~~~~d~~~~~~  436 (676)
                      |....++..+|..+..             .+++++|...|+++++..+...  .+.  .|...-.-..            
T Consensus       220 ~~~~~~~~~la~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~------------  274 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYL-------------LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI------------  274 (411)
T ss_dssp             HHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH------------
Confidence            2224467778887765             5789999999999998765321  111  1111111111            


Q ss_pred             ChhhhhhHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------hHHHHHHHH
Q 005817          437 PSHVEHYISHLLTVYEKAEAMGCLT------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------SVQLWLLRI  504 (676)
Q Consensus       437 ~~~~~~~~~~a~~iye~al~~~p~~------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------~~~lW~~~i  504 (676)
                         ..|+++.|...|++++...+..      ...+...+.++...|++++|...+++++ ...+.      ....+...+
T Consensus       275 ---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la  350 (411)
T 4a1s_A          275 ---FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL-AIAQELGDRIGEARACWSLG  350 (411)
T ss_dssp             ---TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHH
T ss_pred             ---HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHCCChHHHHHHHHHHH
Confidence               1477899999999999874432      5678889999999999999999999999 65443      245666667


Q ss_pred             HHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      .++...|          +.+++.+.|++|+...+
T Consensus       351 ~~~~~~g----------~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          351 NAHSAIG----------GHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHTT----------CHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhc----------cHHHHHHHHHHHHHHHh
Confidence            7776666          47899999999998765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.04  E-value=9.3e-08  Score=97.17  Aligned_cols=245  Identities=11%  Similarity=0.074  Sum_probs=180.2

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL--NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVAL  250 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~--~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l  250 (676)
                      ..++..+++++|.++|.+..+|..-..... ..+  .++.+...++++|..+|.+..+|..-..+.......       +
T Consensus        49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-------l  120 (306)
T 3dra_A           49 SERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-------N  120 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-------T
T ss_pred             CHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-------c
Confidence            368999999999999999999999888775 566  999999999999999999999998876544221100       0


Q ss_pred             ccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHH
Q 005817          251 GEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLR  330 (676)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~  330 (676)
                      +.                                                     .++++.+..+++++++..|.+...|
T Consensus       121 ~~-----------------------------------------------------~~~~~~EL~~~~~~l~~~pkny~aW  147 (306)
T 3dra_A          121 NN-----------------------------------------------------DFDPYREFDILEAMLSSDPKNHHVW  147 (306)
T ss_dssp             TT-----------------------------------------------------CCCTHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cc-----------------------------------------------------cCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            00                                                     0134567889999999999999888


Q ss_pred             HHHHHHHHHhcccCcHH--HHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817          331 QRFFEIVEATNLAQSDD--MHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP  408 (676)
Q Consensus       331 ~~~~~~~~~fe~~~~~~--~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~  408 (676)
                      ..---++..++   ..+  .+...+++++..+|.+..+|...+.........       .....++++.+.+++++...|
T Consensus       148 ~~R~~vl~~l~---~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~-------~~~~~~~eEl~~~~~aI~~~p  217 (306)
T 3dra_A          148 SYRKWLVDTFD---LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL-------ATDNTIDEELNYVKDKIVKCP  217 (306)
T ss_dssp             HHHHHHHHHTT---CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG-------CCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhc---ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc-------chhhhHHHHHHHHHHHHHhCC
Confidence            76544444443   233  677789999999999999998877665331000       002348899999999999988


Q ss_pred             chh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHhcCCHHHHHHH
Q 005817          409 SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---CLTEDIAHRYVTLYLQLGKLDEARKL  484 (676)
Q Consensus       409 ~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~---p~~~~lw~~~~~l~~~~~~~~~A~~l  484 (676)
                      .+. .|. |..+......                ...+.+...+++++..+   |.++..+...++.+.+.|+.++|.++
T Consensus       218 ~n~SaW~-y~~~ll~~~~----------------~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          218 QNPSTWN-YLLGIHERFD----------------RSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             SCHHHHH-HHHHHHHHTT----------------CCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCccHHH-HHHHHHHhcC----------------CChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            765 775 4455554321                11233444555554443   77888888899999999999999999


Q ss_pred             HHHHhhccCCChHHHHHHHHH
Q 005817          485 AAKLCSGKLSDSVQLWLLRIS  505 (676)
Q Consensus       485 ~~~al~~~~P~~~~lW~~~i~  505 (676)
                      ++.+..+..|-....|.-++.
T Consensus       281 ~~~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          281 YDLLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHhccChHHHHHHHHHHh
Confidence            999984468989999987654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.99  E-value=6.7e-09  Score=118.49  Aligned_cols=168  Identities=9%  Similarity=0.018  Sum_probs=128.2

Q ss_pred             CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005817          154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY  232 (676)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y  232 (676)
                      .|++.+.|..++..+.+.| .+.|...|++|++.+|+++..|...+.... ..|+++.|...|++|++.+|++..+|..+
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5777888888888888877 578888999999999998888888888875 67889999999999999999888877766


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHH
Q 005817          233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL  312 (676)
Q Consensus       233 ~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (676)
                      +......                                                                   ++++.|
T Consensus        84 g~~l~~~-------------------------------------------------------------------g~~~~A   96 (723)
T 4gyw_A           84 GNTLKEM-------------------------------------------------------------------QDVQGA   96 (723)
T ss_dssp             HHHHHHT-------------------------------------------------------------------TCHHHH
T ss_pred             HHHHHHc-------------------------------------------------------------------CCHHHH
Confidence            6543321                                                                   255778


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhH
Q 005817          313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ  392 (676)
Q Consensus       313 ~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~  392 (676)
                      ...|++|++..|++.+.+..+-.++...   +..+.|...++++++..|+++.+|..++..+..             .++
T Consensus        97 ~~~~~kAl~l~P~~~~a~~~Lg~~~~~~---g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~-------------~g~  160 (723)
T 4gyw_A           97 LQCYTRAIQINPAFADAHSNLASIHKDS---GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI-------------VCD  160 (723)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-------------TTC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh-------------ccc
Confidence            8888889888888877777766555443   356788888888888899988888888887755             344


Q ss_pred             HHHHHHHHHHHhh
Q 005817          393 MQKAIQVYEEALK  405 (676)
Q Consensus       393 ~~~A~~~ye~al~  405 (676)
                      ++.|.+.|+++++
T Consensus       161 ~~~A~~~~~kal~  173 (723)
T 4gyw_A          161 WTDYDERMKKLVS  173 (723)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.99  E-value=1.8e-07  Score=93.41  Aligned_cols=251  Identities=12%  Similarity=-0.037  Sum_probs=177.6

Q ss_pred             CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCCHHH
Q 005817          154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH----NLNVTAARALMQNGLRVCPTSEEL  228 (676)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~----~~~~~~Ar~~~~ral~~~p~~~~l  228 (676)
                      .|++...|......+...+ ...+...|++++.  |.++..|...+.... .    .++++.|...|++++...  +...
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a   76 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNG   76 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence            4778888888888887776 5789999999999  788899999888875 6    789999999999999875  5666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhh
Q 005817          229 WVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQG  308 (676)
Q Consensus       229 W~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (676)
                      |..+..+....            ...                                                   .++
T Consensus        77 ~~~lg~~~~~g------------~~~---------------------------------------------------~~~   93 (273)
T 1ouv_A           77 CHLLGNLYYSG------------QGV---------------------------------------------------SQN   93 (273)
T ss_dssp             HHHHHHHHHHT------------SSS---------------------------------------------------CCC
T ss_pred             HHHHHHHHhCC------------CCc---------------------------------------------------ccC
Confidence            66655543220            000                                                   025


Q ss_pred             hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh-cccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817          309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (676)
Q Consensus       309 ~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~  387 (676)
                      ++.|...|++|++..  +...+..+-.++..- ...+..+.+...++++++..  ++..+..++..+..+..        
T Consensus        94 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~--------  161 (273)
T 1ouv_A           94 TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRG--------  161 (273)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS--------
T ss_pred             HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCC--------
Confidence            678899999999863  445555554444431 01245778889999988864  67778888888765211        


Q ss_pred             cchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817          388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (676)
Q Consensus       388 ~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~  467 (676)
                       ..+++++|...|+++++..+. ..+...........   .           ..+++++|...|++++..+|  +..+..
T Consensus       162 -~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~~~~g~---~-----------~~~~~~~A~~~~~~a~~~~~--~~a~~~  223 (273)
T 1ouv_A          162 -TPKDLKKALASYDKACDLKDS-PGCFNAGNMYHHGE---G-----------ATKNFKEALARYSKACELEN--GGGCFN  223 (273)
T ss_dssp             -SCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTC---S-----------SCCCHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHcCC---C-----------CCccHHHHHHHHHHHHhCCC--HHHHHH
Confidence             146789999999999976332 22222222222210   0           13678999999999999866  778888


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHhhccCCChHHHHHHH
Q 005817          468 YVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLR  503 (676)
Q Consensus       468 ~~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~  503 (676)
                      .+.++..    .+++++|...+++++ ...|.+...+...
T Consensus       224 l~~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~l~~  262 (273)
T 1ouv_A          224 LGAMQYNGEGVTRNEKQAIENFKKGC-KLGAKGACDILKQ  262 (273)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHH-HHTCHHHHHHHHT
T ss_pred             HHHHHHcCCCcccCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence            9999998    899999999999999 7778776666543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.95  E-value=1.4e-08  Score=115.81  Aligned_cols=169  Identities=13%  Similarity=0.072  Sum_probs=127.3

Q ss_pred             CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHH
Q 005817          323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE  402 (676)
Q Consensus       323 ~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~  402 (676)
                      .|++.+.+..+-.++...   +..+.|...++++++..|++..+|..+|..+..             .+++++|...|++
T Consensus         5 ~P~~a~al~nLG~~~~~~---G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-------------~g~~~eA~~~~~~   68 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQ---GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-------------QGKLQEALMHYKE   68 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHH
Confidence            455555555554444332   357788888888888889888888888888765             5778899999999


Q ss_pred             HhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHH
Q 005817          403 ALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEA  481 (676)
Q Consensus       403 al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A  481 (676)
                      |++..|... .|.........                  .|+++.|+..|++|+..+|.+.+.|...+..+...|++++|
T Consensus        69 Al~l~P~~~~a~~nLg~~l~~------------------~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA  130 (723)
T 4gyw_A           69 AIRISPTFADAYSNMGNTLKE------------------MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA  130 (723)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            988877643 33333222222                  36788899999999998899999999999999999999999


Q ss_pred             HHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          482 RKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       482 ~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      +..|++|+ +..|++...|..++.+....++          .+++.+.|++++..
T Consensus       131 i~~~~~Al-~l~P~~~~a~~~L~~~l~~~g~----------~~~A~~~~~kal~l  174 (723)
T 4gyw_A          131 IASYRTAL-KLKPDFPDAYCNLAHCLQIVCD----------WTDYDERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHH-HHCSCCHHHHHHHHHHHHHTTC----------CTTHHHHHHHHHHH
T ss_pred             HHHHHHHH-HhCCCChHHHhhhhhHHHhccc----------HHHHHHHHHHHHHh
Confidence            99999999 8889998888888888877653          56666667777654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.93  E-value=1.5e-07  Score=93.57  Aligned_cols=61  Identities=16%  Similarity=0.095  Sum_probs=48.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAMGCL---TEDIAHRYVTLYLQL----------GKLDEARKLAAKLCSGKLSDSVQLWLL  502 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~---~~~lw~~~~~l~~~~----------~~~~~A~~l~~~al~~~~P~~~~lW~~  502 (676)
                      .|+++.|...|++++...|.   .++.+...+..+...          |++++|...+++++ ..+|+++.....
T Consensus       161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~a  234 (261)
T 3qky_A          161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL-QIFPDSPLLRTA  234 (261)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH-HHCTTCTHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH-HHCCCChHHHHH
Confidence            36688888899998888777   466777877777765          88899999999999 889988644433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.91  E-value=5e-08  Score=90.30  Aligned_cols=167  Identities=13%  Similarity=-0.031  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          159 ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       159 ~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~  237 (676)
                      ..|...+......| ...+...|++++...|.++..|...+.... ..|+++.|...+++++...|.+..+|..++....
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45555555555555 478889999999999999999988888876 6789999999999999999988877766655433


Q ss_pred             HHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHH
Q 005817          238 TYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYS  317 (676)
Q Consensus       238 ~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~  317 (676)
                      ..                                                                   ++++.|...|+
T Consensus        88 ~~-------------------------------------------------------------------~~~~~A~~~~~  100 (186)
T 3as5_A           88 QV-------------------------------------------------------------------QKYDLAVPLLI  100 (186)
T ss_dssp             HH-------------------------------------------------------------------TCHHHHHHHHH
T ss_pred             Hh-------------------------------------------------------------------cCHHHHHHHHH
Confidence            21                                                                   25567888899


Q ss_pred             HHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHH
Q 005817          318 GAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAI  397 (676)
Q Consensus       318 ~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~  397 (676)
                      +++...|++...+..+..++...   +..+.+...+++++...|+++.+|..+|..+..             .+++++|.
T Consensus       101 ~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------------~~~~~~A~  164 (186)
T 3as5_A          101 KVAEANPINFNVRFRLGVALDNL---GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-------------MGRHEEAL  164 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCHHHHH
T ss_pred             HHHhcCcHhHHHHHHHHHHHHHc---CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-------------cCCHHHHH
Confidence            99988888877776655554432   356788889999999999999999999888865             47789999


Q ss_pred             HHHHHHhhccCc
Q 005817          398 QVYEEALKNVPS  409 (676)
Q Consensus       398 ~~ye~al~~~~~  409 (676)
                      ..|+++++..|+
T Consensus       165 ~~~~~~~~~~~~  176 (186)
T 3as5_A          165 PHFKKANELDEG  176 (186)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCC
Confidence            999999876654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.90  E-value=8.6e-09  Score=104.56  Aligned_cols=248  Identities=10%  Similarity=0.026  Sum_probs=157.0

Q ss_pred             hCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-
Q 005817          153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRF--------HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC-  222 (676)
Q Consensus       153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~--------~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~-  222 (676)
                      ..|.....|...+......| ...+...|++++..        .|....+|...+.... ..|+++.|...|++++... 
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-DQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence            35667778888888877777 57899999999995        6667788888888886 6889999999999999874 


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817          223 ----PTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (676)
Q Consensus       223 ----p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (676)
                          ++++.....+..+-..+                                                           
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~-----------------------------------------------------------  121 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLY-----------------------------------------------------------  121 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred             HHhCCCChHHHHHHHHHHHHH-----------------------------------------------------------
Confidence                33333222222221111                                                           


Q ss_pred             hhhhhHHHhhhHHHHHHHHHHHhcC-----CCc---hhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhc--------CCC
Q 005817          299 KSVDLFREQGLRVLQTIYSGAVEAL-----PSS---FNLRQRFFEIVEATNLAQSDDMHDKILSDMQRD--------FLV  362 (676)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~Al~~~-----p~~---~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~--------~p~  362 (676)
                           +..++++.|...|+++++..     ++.   ...+..+..++   ...+..+.+...+++++..        .|.
T Consensus       122 -----~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  193 (311)
T 3nf1_A          122 -----GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC---QNQGKYEEVEYYYQRALEIYQTKLGPDDPN  193 (311)
T ss_dssp             -----HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---HTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred             -----HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence                 00135667788888887653     222   23333332222   2224577888888888776        455


Q ss_pred             ChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc---------h-hHHHHHHHHHHHHhcCcccccc
Q 005817          363 DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS---------S-MIFDLYTKFLMDMIAPKKEETR  432 (676)
Q Consensus       363 ~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~---------~-~lw~~y~~~~~~~~~~~~~d~~  432 (676)
                      ...++..+|..+..             .+++++|...|+++++..+.         . .+|......... ... .    
T Consensus       194 ~~~~~~~la~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~----  254 (311)
T 3nf1_A          194 VAKTKNNLASCYLK-------------QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC-KGK-Q----  254 (311)
T ss_dssp             HHHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh-cCc-h----
Confidence            56678888888865             57899999999999975322         1 133222211110 000 0    


Q ss_pred             CCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005817          433 DSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS  494 (676)
Q Consensus       433 ~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P  494 (676)
                            ...+.+..+...++++...+|.....|...+.++...|++++|...+++++ +..|
T Consensus       255 ------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~l~~  309 (311)
T 3nf1_A          255 ------KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM-RSRK  309 (311)
T ss_dssp             ---------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHC
T ss_pred             ------hhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHhh
Confidence                  011234456667778777778888999999999999999999999999998 5544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.90  E-value=1.9e-07  Score=92.73  Aligned_cols=201  Identities=10%  Similarity=0.051  Sum_probs=140.1

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH
Q 005817          151 VMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE  226 (676)
Q Consensus       151 l~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~  226 (676)
                      ....|.+...+...+......| +..+...|++++..+|.+   +..|...+...+ ..|+++.|...|++++...|+++
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~   86 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDP   86 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCc
Confidence            3457888888888888887777 589999999999999998   899999999886 68899999999999999999775


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHH
Q 005817          227 ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE  306 (676)
Q Consensus       227 ~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (676)
                      ..-..+..+-..+..        .+.                      ....                          ..
T Consensus        87 ~~~~a~~~lg~~~~~--------~~~----------------------~~~~--------------------------~~  110 (261)
T 3qky_A           87 RVPQAEYERAMCYYK--------LSP----------------------PYEL--------------------------DQ  110 (261)
T ss_dssp             THHHHHHHHHHHHHH--------HCC----------------------CTTS--------------------------CC
T ss_pred             hhHHHHHHHHHHHHH--------hcc----------------------cccc--------------------------cc
Confidence            433333332221100        000                      0000                          01


Q ss_pred             hhhHHHHHHHHHHHhcCCCchhHHHHH--------------HHHHHHhcccCcHHHHHHHHHHHHhcCCCC---hhhHHH
Q 005817          307 QGLRVLQTIYSGAVEALPSSFNLRQRF--------------FEIVEATNLAQSDDMHDKILSDMQRDFLVD---PKYWDW  369 (676)
Q Consensus       307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~--------------~~~~~~fe~~~~~~~a~~il~~~~~~~p~~---~~~w~~  369 (676)
                      ++++.|...|+++++..|++...+...              +.+...+...+..+.+...+++++..+|++   +.++..
T Consensus       111 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~  190 (261)
T 3qky_A          111 TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG  190 (261)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence            477889999999999999876555332              222222222346789999999999999995   457888


Q ss_pred             HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh
Q 005817          370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM  411 (676)
Q Consensus       370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~  411 (676)
                      ++..+...+....   .....+++++|...|+++++..|...
T Consensus       191 l~~~~~~~g~~~~---~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          191 AMRAYIAYAEQSV---RARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHHTSC---GGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHhcccch---hhcccchHHHHHHHHHHHHHHCCCCh
Confidence            8887754210000   00013789999999999999988754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.89  E-value=1.5e-06  Score=86.75  Aligned_cols=247  Identities=11%  Similarity=0.011  Sum_probs=170.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhH
Q 005817          187 HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADE  266 (676)
Q Consensus       187 ~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~  266 (676)
                      .|.++..+...+.... ..|+++.|...|++++.  |.+...|..+..+....            ...            
T Consensus         2 ~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g------------~~~------------   54 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSY-KEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQG------------QGV------------   54 (273)
T ss_dssp             ---CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT------------SSS------------
T ss_pred             CCCChHHHHHHHHHHH-hCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcC------------CCc------------
Confidence            4788999999999886 67899999999999999  66677666655443220            000            


Q ss_pred             HhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-hcccCc
Q 005817          267 KRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEA-TNLAQS  345 (676)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~-fe~~~~  345 (676)
                                                             .++++.|...|++|++..  +...+..+-.++.. ....+.
T Consensus        55 ---------------------------------------~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~   93 (273)
T 1ouv_A           55 ---------------------------------------EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN   93 (273)
T ss_dssp             ---------------------------------------CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred             ---------------------------------------CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC
Confidence                                                   025678999999999874  44555555444433 011246


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhc
Q 005817          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIA  425 (676)
Q Consensus       346 ~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~  425 (676)
                      .+.+...+++++..  +++..+..++..+..+..         ..+++++|...|+++++..+. ..+........... 
T Consensus        94 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~~~~~~-  160 (273)
T 1ouv_A           94 TNKALQYYSKACDL--KYAEGCASLGGIYHDGKV---------VTRDFKKAVEYFTKACDLNDG-DGCTILGSLYDAGR-  160 (273)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS---------SCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTS-
T ss_pred             HHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCC---------cccCHHHHHHHHHHHHhcCcH-HHHHHHHHHHHcCC-
Confidence            77888999998886  478889999998865211         146789999999999986432 22222222222110 


Q ss_pred             CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817          426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWL  501 (676)
Q Consensus       426 ~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~  501 (676)
                        .           ..+++++|...|++++..+  ++..+...+.++..    .+++++|...+++++ ...|  +..+.
T Consensus       161 --~-----------~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~--~~a~~  222 (273)
T 1ouv_A          161 --G-----------TPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC-ELEN--GGGCF  222 (273)
T ss_dssp             --S-----------SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH-HTTC--HHHHH
T ss_pred             --C-----------CCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-hCCC--HHHHH
Confidence              0           1366899999999999874  57888999999999    999999999999999 6544  56666


Q ss_pred             HHHHHHHHh-ccccCCCCChhchHHHHHHHHHHHhhcCh
Q 005817          502 LRISVEIRC-VTRNSFSPSKADILSIFELLKCILTKVSA  539 (676)
Q Consensus       502 ~~i~l~~~~-~~~~~~~p~~~~~~~~~~~f~~Al~~~~~  539 (676)
                      ....+.... +.       ..+.+++.+.|++|+..-|.
T Consensus       223 ~l~~~~~~g~~~-------~~~~~~A~~~~~~a~~~~~~  254 (273)
T 1ouv_A          223 NLGAMQYNGEGV-------TRNEKQAIENFKKGCKLGAK  254 (273)
T ss_dssp             HHHHHHHTTSSS-------SCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCCc-------ccCHHHHHHHHHHHHHcCCH
Confidence            666666541 10       02578899999999987654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.85  E-value=9.3e-08  Score=88.44  Aligned_cols=152  Identities=10%  Similarity=0.005  Sum_probs=120.4

Q ss_pred             cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHH
Q 005817          345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDM  423 (676)
Q Consensus       345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~  423 (676)
                      ..+.+...+++++...|+++.+|..++..+..             .+++++|...|+++++..|... .|......... 
T Consensus        23 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-   88 (186)
T 3as5_A           23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-------------TGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-   88 (186)
T ss_dssp             CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Confidence            45677788888888888888888888887765             4678899999999988777543 44443333332 


Q ss_pred             hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHH
Q 005817          424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR  503 (676)
Q Consensus       424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~  503 (676)
                                       .++++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|...
T Consensus        89 -----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l  150 (186)
T 3as5_A           89 -----------------VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL-GLRPNEGKVHRAI  150 (186)
T ss_dssp             -----------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHH
T ss_pred             -----------------hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH-hcCccchHHHHHH
Confidence                             3668899999999999889899999999999999999999999999999 7888888888888


Q ss_pred             HHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       504 i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      +.+....|          +.+++.+.|++++...|
T Consensus       151 a~~~~~~~----------~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          151 AFSYEQMG----------RHEEALPHFKKANELDE  175 (186)
T ss_dssp             HHHHHHTT----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcC----------CHHHHHHHHHHHHHcCC
Confidence            88887765          47888888888876543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.85  E-value=1.1e-08  Score=92.72  Aligned_cols=131  Identities=8%  Similarity=-0.008  Sum_probs=102.7

Q ss_pred             HHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcc
Q 005817          350 DKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKK  428 (676)
Q Consensus       350 ~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~  428 (676)
                      ...+..++...|+++..+..+|..+..             .+++++|+..|+++++..|... .|.........      
T Consensus        17 i~~~~~a~~~~p~~~~~~~~la~~y~~-------------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~------   77 (150)
T 4ga2_A           17 IASVQGSTPSPRQKSIKGFYFAKLYYE-------------AKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL------   77 (150)
T ss_dssp             HHHHHHHSCSHHHHHTTHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------
T ss_pred             HHHHHHhcccCcccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------
Confidence            333444444445555667778888776             5789999999999999988754 55444433333      


Q ss_pred             ccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHH-HHHHhhccCCChHHHHHHHHHHH
Q 005817          429 EETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKL-AAKLCSGKLSDSVQLWLLRISVE  507 (676)
Q Consensus       429 ~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l-~~~al~~~~P~~~~lW~~~i~l~  507 (676)
                                  .|+++.|...|++++..+|.+++.|...+.++.+.|++++|... +++|+ +..|+++.+|..+..+.
T Consensus        78 ------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al-~l~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A           78 ------------EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA-KLFPGSPAVYKLKEQLL  144 (150)
T ss_dssp             ------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH-HHSTTCHHHHHHHHHHH
T ss_pred             ------------cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HhCcCCHHHHHHHHHHH
Confidence                        37799999999999999999999999999999999998776554 69999 89999999999988888


Q ss_pred             HHhcc
Q 005817          508 IRCVT  512 (676)
Q Consensus       508 ~~~~~  512 (676)
                      ...|+
T Consensus       145 ~~~G~  149 (150)
T 4ga2_A          145 DCEGE  149 (150)
T ss_dssp             HTCCC
T ss_pred             HHhCc
Confidence            76653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.82  E-value=1.7e-07  Score=94.80  Aligned_cols=170  Identities=12%  Similarity=-0.067  Sum_probs=134.0

Q ss_pred             CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHH
Q 005817          323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE  402 (676)
Q Consensus       323 ~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~  402 (676)
                      .|++.+.+......+..   .+..+.+...+++++...|+++.++..+|..++.             .+++++|...|++
T Consensus       113 lp~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-------------~g~~~~A~~~l~~  176 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQ---ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-------------LNRSEDAEAVLXT  176 (287)
T ss_dssp             SCCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-------------TTCHHHHHHHHTT
T ss_pred             cCCchhhHHHHHHHHHh---CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-------------CCCHHHHHHHHHh
Confidence            47766655544333322   2467899999999999999999999999999876             5889999999999


Q ss_pred             HhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005817          403 ALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR  482 (676)
Q Consensus       403 al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~  482 (676)
                      ++...|....+..........                 .+....+...|++++..+|.+++.+..++..+...|++++|.
T Consensus       177 ~~~~~p~~~~~~~~~~~~l~~-----------------~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~  239 (287)
T 3qou_A          177 IPLQDQDTRYQGLVAQIELLX-----------------QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL  239 (287)
T ss_dssp             SCGGGCSHHHHHHHHHHHHHH-----------------HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CchhhcchHHHHHHHHHHHHh-----------------hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence            998888544332222222211                 233456888999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCh--HHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          483 KLAAKLCSGKLSDS--VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       483 ~l~~~al~~~~P~~--~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      ..+.+++ +..|++  ...|...+.+....|.          .+++...|.+++..
T Consensus       240 ~~l~~~l-~~~p~~~~~~a~~~l~~~~~~~g~----------~~~a~~~~r~al~~  284 (287)
T 3qou_A          240 ELLFGHL-RXDLTAADGQTRXTFQEILAALGT----------GDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHH-HHCTTGGGGHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred             HHHHHHH-hcccccccchHHHHHHHHHHHcCC----------CCcHHHHHHHHHHH
Confidence            9999999 889987  8899999998887764          56677778888753

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.80  E-value=3.3e-08  Score=100.15  Aligned_cols=242  Identities=8%  Similarity=-0.082  Sum_probs=145.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 005817          187 HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC--------PTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV  258 (676)
Q Consensus       187 ~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~--------p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~  258 (676)
                      +|.....|...+.... ..|+++.|..+|++++...        |....+|...+.....                    
T Consensus        23 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--------------------   81 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYA-SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD--------------------   81 (311)
T ss_dssp             SCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH--------------------
T ss_pred             chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--------------------
Confidence            5666788888888886 6889999999999999862        2222333333322211                    


Q ss_pred             ccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC-----CCchhHHHHH
Q 005817          259 RDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL-----PSSFNLRQRF  333 (676)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~-----p~~~~~~~~~  333 (676)
                                                                     .++++.|...|++++...     ++.......+
T Consensus        82 -----------------------------------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  114 (311)
T 3nf1_A           82 -----------------------------------------------QNKYKDAANLLNDALAIREKTLGKDHPAVAATL  114 (311)
T ss_dssp             -----------------------------------------------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -----------------------------------------------CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence                                                           135567777888877653     2222222222


Q ss_pred             HHHHHHhcccCcHHHHHHHHHHHHhcC--------CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhh
Q 005817          334 FEIVEATNLAQSDDMHDKILSDMQRDF--------LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALK  405 (676)
Q Consensus       334 ~~~~~~fe~~~~~~~a~~il~~~~~~~--------p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~  405 (676)
                      ..+...+...+..+.+...+++++...        |....++..+|..+..             .+++++|...|+++++
T Consensus       115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-------------~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN-------------QGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-------------TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHH
Confidence            222222222346778888888887764        4445668888888865             5789999999999998


Q ss_pred             cc-----C-chh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC---------CCcHHHHHH
Q 005817          406 NV-----P-SSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---------CLTEDIAHR  467 (676)
Q Consensus       406 ~~-----~-~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~---------p~~~~lw~~  467 (676)
                      ..     + ...   .+.........                  .|++++|...|++++...         +....+|..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  243 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLK------------------QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH  243 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence            62     1 111   22222222222                  477899999999998642         222334444


Q ss_pred             HHHHH------HhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          468 YVTLY------LQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       468 ~~~l~------~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      ...+.      ...+.+.+|...+.+++ ...|....+|...+.+....|          +.+++.+.|++|+...|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          244 AEEREECKGKQKDGTSFGEYGGWYKACK-VDSPTVTTTLKNLGALYRRQG----------KFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             HHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCchhhHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHhh
Confidence            44333      33344555666777777 677888999999999888876          47899999999987543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.78  E-value=5.4e-08  Score=111.12  Aligned_cols=168  Identities=9%  Similarity=-0.073  Sum_probs=139.5

Q ss_pred             HhhhHHHHHHHHHHH--------hcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccc
Q 005817          306 EQGLRVLQTIYSGAV--------EALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD  377 (676)
Q Consensus       306 ~~~~~~a~~iy~~Al--------~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~  377 (676)
                      .++++.|...|++++        +..|++.+.+......+...   +..+.|...++++++..|+++.+|..+|..+.. 
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-  479 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDL---GDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-  479 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
T ss_pred             ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhc---CCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-
Confidence            457889999999999        77898888777665555443   367899999999999999999999999998876 


Q ss_pred             cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHH
Q 005817          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA  456 (676)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~  456 (676)
                                  .+++++|...|+++++..|... .|.........                  .|+++. ...|++|+.
T Consensus       480 ------------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~------------------~g~~~~-~~~~~~al~  528 (681)
T 2pzi_A          480 ------------TGDYDSATKHFTEVLDTFPGELAPKLALAATAEL------------------AGNTDE-HKFYQTVWS  528 (681)
T ss_dssp             ------------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH------------------HTCCCT-TCHHHHHHH
T ss_pred             ------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cCChHH-HHHHHHHHH
Confidence                        5889999999999999988754 44433333333                  355677 889999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 005817          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR  509 (676)
Q Consensus       457 ~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~  509 (676)
                      .+|.++..|...+..+...|++++|+..|++++ +..|++...|..++.....
T Consensus       529 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          529 TNDGVISAAFGLARARSAEGDRVGAVRTLDEVP-PTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-TTSTTHHHHHHHHHHHTC-
T ss_pred             hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc-ccCcccHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999 8999999999888776644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.78  E-value=0.00011  Score=86.78  Aligned_cols=173  Identities=12%  Similarity=0.046  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh
Q 005817          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE  541 (676)
Q Consensus       462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~  541 (676)
                      ..-|..+++.+...|++++|...|.++-         -|...+..+.+.|+          ++.+.+.+.+|..      
T Consensus      1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------ny~rLA~tLvkLge----------~q~AIEaarKA~n------ 1249 (1630)
T 1xi4_A         1195 NAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGE----------YQAAVDGARKANS------ 1249 (1630)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhh---------HHHHHHHHHHHhCC----------HHHHHHHHHHhCC------
Confidence            3456679999999999999999998863         68888888877763          7888777777722      


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005817          542 SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNC  621 (676)
Q Consensus       542 ~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~  621 (676)
                       ...|.....-.... ..++.+..-.+. +.  .    .++-....+.++...|.+++|..++++++.+.+....+|..+
T Consensus      1250 -~~aWkev~~acve~-~Ef~LA~~cgl~-Ii--v----~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A         1250 -TRTWKEVCFACVDG-KEFRLAQMCGLH-IV--V----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred             -HHHHHHHHHHHhhh-hHHHHHHHHHHh-hh--c----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence             34676432211111 222222221111 10  0    122233567778889999999999999999998888899777


Q ss_pred             HHHHhhccCCCCccchHHHHHHHHHHHhhCC-----CCchHHHHHHHHHhhcCCcc
Q 005817          622 IELENNLASVGDKDSLVNARKLFESALATYD-----QNTSLWRDYYSTETKVSFSL  672 (676)
Q Consensus       622 i~lE~~~~~~~~~~~~~~aR~lye~al~~~~-----~~~~lW~~y~~fE~~~G~~~  672 (676)
                      ..+..+..+    +.+...-++|+..++..+     .+..+|..+.-+=.++|+.+
T Consensus      1321 aiLyaKy~p----eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A         1321 AILYSKFKP----QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred             HHHHHhCCH----HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence            777655442    267788889999888766     56689999988888888765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.75  E-value=3.1e-07  Score=87.97  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=17.1

Q ss_pred             hhHHHHHHHHHHHHhhccCchh
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM  411 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~  411 (676)
                      .+++++|+..|+++++..|+..
T Consensus       170 ~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          170 TTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHTHHHHHHHHHHHTTTSCCHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCHH
Confidence            4677888888888888878644

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.73  E-value=9.4e-08  Score=109.12  Aligned_cols=165  Identities=10%  Similarity=-0.054  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHH
Q 005817          140 VARILEIYRLAV--------MRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTA  210 (676)
Q Consensus       140 ~~~~~~iyeral--------~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~  210 (676)
                      ...|...|++++        ...|++...|...+..+...| ++.+...|++++..+|+++.+|...+.... ..|+++.
T Consensus       407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~  485 (681)
T 2pzi_A          407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDS  485 (681)
T ss_dssp             HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHH
Confidence            567899999999        999999999999999888877 588999999999999999999999999886 6789999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817          211 ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS  290 (676)
Q Consensus       211 Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (676)
                      |...|+++++.+|++..+|..++......                                                   
T Consensus       486 A~~~~~~al~l~P~~~~~~~~lg~~~~~~---------------------------------------------------  514 (681)
T 2pzi_A          486 ATKHFTEVLDTFPGELAPKLALAATAELA---------------------------------------------------  514 (681)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHH---------------------------------------------------
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHc---------------------------------------------------
Confidence            99999999999999999888776654321                                                   


Q ss_pred             CCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHH
Q 005817          291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWL  370 (676)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~l  370 (676)
                                      ++++. ...|++|++..|++...+..+-.++...   +..+.|...++++++..|++..+|..+
T Consensus       515 ----------------g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~a~~~~  574 (681)
T 2pzi_A          515 ----------------GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAE---GDRVGAVRTLDEVPPTSRHFTTARLTS  574 (681)
T ss_dssp             ----------------TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHTSCTTSTTHHHHHHHH
T ss_pred             ----------------CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc---CCHHHHHHHHHhhcccCcccHHHHHHH
Confidence                            13345 6788999999999988887766655443   367899999999999999999999999


Q ss_pred             HHHhcc
Q 005817          371 ARLKMT  376 (676)
Q Consensus       371 a~~~~~  376 (676)
                      +..++.
T Consensus       575 ~~~~~~  580 (681)
T 2pzi_A          575 AVTLLS  580 (681)
T ss_dssp             HHHTC-
T ss_pred             HHHHHc
Confidence            998865

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.73  E-value=2e-07  Score=84.27  Aligned_cols=129  Identities=6%  Similarity=-0.094  Sum_probs=102.5

Q ss_pred             hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~  468 (676)
                      .+++++|+..|++++...|... .|.........                  .|++++|...|++++..+|.++..|...
T Consensus        10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~------------------~~~~~~A~~~~~~al~~~p~~~~a~~~l   71 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE------------------AKEYDLAKKYICTYINVQERDPKAHRFL   71 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5889999999999998766543 33333333322                  4779999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchH-HHHHHHHHHHhhcChhhhHHHHH
Q 005817          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL-SIFELLKCILTKVSALESESLWL  547 (676)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~-~~~~~f~~Al~~~~~~~~~~lW~  547 (676)
                      +.++...|++++|...+++++ +..|+++..|...+.+....+.          .+ .+...+++|++..|..  ..+|.
T Consensus        72 g~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~----------~~~aa~~~~~~al~l~P~~--~~~~~  138 (150)
T 4ga2_A           72 GLLYELEENTDKAVECYRRSV-ELNPTQKDLVLKIAELLCKNDV----------TDGRAKYWVERAAKLFPGS--PAVYK  138 (150)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHCS----------SSSHHHHHHHHHHHHSTTC--HHHHH
T ss_pred             HHHHHHcCchHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHhCcCC--HHHHH
Confidence            999999999999999999999 8999999999999988887764          33 3444568999877754  33454


Q ss_pred             HH
Q 005817          548 MA  549 (676)
Q Consensus       548 ~~  549 (676)
                      ..
T Consensus       139 l~  140 (150)
T 4ga2_A          139 LK  140 (150)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.72  E-value=1.3e-07  Score=87.83  Aligned_cols=151  Identities=12%  Similarity=-0.021  Sum_probs=118.2

Q ss_pred             CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHH
Q 005817          344 QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMD  422 (676)
Q Consensus       344 ~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~  422 (676)
                      +..+.+...+++++...|+++.+|..+|..+..             .+++++|...|++++...| .. .+.........
T Consensus        20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-------------~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~   85 (176)
T 2r5s_A           20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLLE-------------TKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH   85 (176)
T ss_dssp             TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH-------------TTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-------------CCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence            356778888888888899999999999988875             5789999999999998877 33 22221111111


Q ss_pred             HhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh--HHHH
Q 005817          423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS--VQLW  500 (676)
Q Consensus       423 ~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~--~~lW  500 (676)
                      .                 .+....+...|++++..+|.++..|..++..+...|++++|...+++++ +..|..  ...|
T Consensus        86 ~-----------------~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~a~  147 (176)
T 2r5s_A           86 Q-----------------QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL-KVNLGAQDGEVK  147 (176)
T ss_dssp             H-----------------HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTTTTTHHH
T ss_pred             h-----------------hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccChHHHH
Confidence            0                 0111246889999999999999999999999999999999999999999 888875  5688


Q ss_pred             HHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          501 LLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       501 ~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      ...+.+....|.          .+++...|.++|.+
T Consensus       148 ~~l~~~~~~~g~----------~~~A~~~y~~al~~  173 (176)
T 2r5s_A          148 KTFMDILSALGQ----------GNAIASKYRRQLYS  173 (176)
T ss_dssp             HHHHHHHHHHCS----------SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC----------CCcHHHHHHHHHHH
Confidence            888888877764          57788888888764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.71  E-value=1.2e-05  Score=82.18  Aligned_cols=248  Identities=12%  Similarity=0.009  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL--  206 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~--  206 (676)
                      ..++..+++.++..+|.+..+|..--..+...+           .......++.++..+|.++.+|..-.-.. ...+  
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL-~~l~~~  124 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL-SRLPEP  124 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hccCcc
Confidence            357899999999999999999987776665432           13567899999999999999999876554 4555  


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCC
Q 005817          207 NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVEN  286 (676)
Q Consensus       207 ~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (676)
                      .++.+..++++++..+|.+..+|..-.-+-...           +.                                  
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l-----------~~----------------------------------  159 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQA-----------AV----------------------------------  159 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------TC----------------------------------
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------Cc----------------------------------
Confidence            489999999999999999999997654332111           00                                  


Q ss_pred             CCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccc-----------CcHHHHHHHHHH
Q 005817          287 TDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLA-----------QSDDMHDKILSD  355 (676)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~-----------~~~~~a~~il~~  355 (676)
                                           ..+.+...++++++..|.+...|.....++..+...           ...+.+...+.+
T Consensus       160 ---------------------~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~  218 (331)
T 3dss_A          160 ---------------------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN  218 (331)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH
T ss_pred             ---------------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHH
Confidence                                 124567888999999999988887766666554210           124567778899


Q ss_pred             HHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCC
Q 005817          356 MQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSE  435 (676)
Q Consensus       356 ~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~  435 (676)
                      ++...|++..+|..+.-......+... . ..+..+.++++++.+++.++..|.. .|..-..........         
T Consensus       219 ai~~~P~d~SaW~Y~r~ll~~~~~~~~-~-~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~---------  286 (331)
T 3dss_A          219 AFFTDPNDQSAWFYHRWLLGAGSGRCE-L-SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALD---------  286 (331)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHSSSCGGG-C-CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHC---------
T ss_pred             HHHhCCCCHHHHHHHHHHHHhccCccc-c-chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhc---------
Confidence            999999999999866544432211100 0 0123467889999999999988876 454222211111100         


Q ss_pred             CChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 005817          436 LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVT  470 (676)
Q Consensus       436 ~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~  470 (676)
                          ..+..+.++..+.+.+..+|....-|.+...
T Consensus       287 ----~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~  317 (331)
T 3dss_A          287 ----PLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  317 (331)
T ss_dssp             ----TTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             ----ccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence                0245678899999999999988777776543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.70  E-value=9.4e-08  Score=88.88  Aligned_cols=168  Identities=12%  Similarity=0.011  Sum_probs=126.6

Q ss_pred             CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817          155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (676)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~  233 (676)
                      |...+.+...+..+...| ...+...|++++..+|+++..|...+.... ..|+++.|...|++++...| ++.++....
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            444455566666666666 578999999999999999999999999986 68899999999999999999 765544333


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (676)
Q Consensus       234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (676)
                      .+....       .                                                           .....|.
T Consensus        81 ~~~~~~-------~-----------------------------------------------------------~~~~~a~   94 (176)
T 2r5s_A           81 KLELHQ-------Q-----------------------------------------------------------AAESPEL   94 (176)
T ss_dssp             HHHHHH-------H-----------------------------------------------------------HTSCHHH
T ss_pred             HHHHHh-------h-----------------------------------------------------------cccchHH
Confidence            222110       0                                                           0112357


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC--hhhHHHHHHHhccccCCCCCCCcCcchh
Q 005817          314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD--PKYWDWLARLKMTDSVSKDGTSEDIVPS  391 (676)
Q Consensus       314 ~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~--~~~w~~la~~~~~~~~~~~~~~~~~~~~  391 (676)
                      ..|+++++..|++...+..+-.++...   +..+.+...++++++..|+.  +.+|..++..+..             .+
T Consensus        95 ~~~~~al~~~P~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~-------------~g  158 (176)
T 2r5s_A           95 KRLEQELAANPDNFELACELAVQYNQV---GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA-------------LG  158 (176)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-------------HC
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-------------hC
Confidence            889999999999988887776665543   46789999999999999986  5589888887754             46


Q ss_pred             HHHHHHHHHHHHhhc
Q 005817          392 QMQKAIQVYEEALKN  406 (676)
Q Consensus       392 ~~~~A~~~ye~al~~  406 (676)
                      +.+.|...|+++|..
T Consensus       159 ~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          159 QGNAIASKYRRQLYS  173 (176)
T ss_dssp             SSCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHH
Confidence            678899999998854

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.69  E-value=3e-06  Score=86.01  Aligned_cols=245  Identities=10%  Similarity=0.058  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchh--HHHHHHHHHHHHhhccCchh-HHHHHHHHHHHH
Q 005817          347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS--QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDM  423 (676)
Q Consensus       347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~--~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~  423 (676)
                      +.+....+.++..+|++..+|...+.....             .+  .++++...++.++...|... +|..=-......
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~-------------l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~  116 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKN-------------LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQI  116 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-------------CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHH-------------cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence            567788889999999999999988877643             23  78999999999999888765 675432222111


Q ss_pred             hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhccCCChHHHHH
Q 005817          424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLD--EARKLAAKLCSGKLSDSVQLWL  501 (676)
Q Consensus       424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~--~A~~l~~~al~~~~P~~~~lW~  501 (676)
                      ......           .+.++.+...+++++..+|.+...|..=.-++...|.++  +++..+++++ ...|.+...|.
T Consensus       117 ~~~l~~-----------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i-~~d~~N~sAW~  184 (306)
T 3dra_A          117 MELNNN-----------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI-DTDLKNNSAWS  184 (306)
T ss_dssp             HHHTTT-----------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHCTTCHHHHH
T ss_pred             HHhccc-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH-HhCCCCHHHHH
Confidence            100000           134688999999999999999999999888888888888  9999999999 89999999999


Q ss_pred             HHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCc
Q 005817          502 LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF  581 (676)
Q Consensus       502 ~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  581 (676)
                      .+..+....+...    +....++..+.+.++|...|.+.  +.|......+...+.....+.+.+.+.+..+......+
T Consensus       185 ~R~~ll~~l~~~~----~~~~~~eEl~~~~~aI~~~p~n~--SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~  258 (306)
T 3dra_A          185 HRFFLLFSKKHLA----TDNTIDEELNYVKDKIVKCPQNP--STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS  258 (306)
T ss_dssp             HHHHHHHSSGGGC----CHHHHHHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred             HHHHHHHhccccc----hhhhHHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH
Confidence            9887776543200    01125677788888888777653  46875433333322111111111111111110000011


Q ss_pred             chHHHHHHHHHHhcCHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 005817          582 SLPSAIINLVIQKDGIQQAREMYKRFLA-LPRPGLVLYQNCI  622 (676)
Q Consensus       582 ~~~~~y~~~~~~~g~~~~Ar~iy~~al~-~~p~~~~l~~~~i  622 (676)
                      ......++...+.|+.++|.++|++++. ..|....+|..-+
T Consensus       259 ~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~  300 (306)
T 3dra_A          259 FALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI  300 (306)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            1122344555577889999999999886 6777778887654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.68  E-value=3.4e-07  Score=102.14  Aligned_cols=164  Identities=12%  Similarity=0.059  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|...|++++...|++...|..++..+...| .+.+...|++++...|+++..|..++.... ..|+++.|...|+++
T Consensus         5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a   83 (568)
T 2vsy_A            5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQA   83 (568)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence            456788999999999999999999999988877 588999999999999999999999999886 688999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817          219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ  298 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (676)
                      ++..|++..+|..++......                                                           
T Consensus        84 l~~~p~~~~~~~~la~~~~~~-----------------------------------------------------------  104 (568)
T 2vsy_A           84 SDAAPEHPGIALWLGHALEDA-----------------------------------------------------------  104 (568)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT-----------------------------------------------------------
T ss_pred             HhcCCCCHHHHHHHHHHHHHc-----------------------------------------------------------
Confidence            999999988887776554321                                                           


Q ss_pred             hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005817          299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA  371 (676)
Q Consensus       299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la  371 (676)
                              ++++.|...|+++++..|++...+..+..++......+..+.+...++++++..|++...+..++
T Consensus       105 --------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          105 --------GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             --------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence                    25677899999999999988777777666655431113567888899999999998876665544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.65  E-value=7.9e-07  Score=89.87  Aligned_cols=171  Identities=10%  Similarity=-0.039  Sum_probs=135.5

Q ss_pred             HhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005817          152 MRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV  230 (676)
Q Consensus       152 ~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~  230 (676)
                      ...|++...+...+..+...| ...+...|++++..+|+++.+|...+.... ..|+.+.|...|++++...|+. ..+.
T Consensus       111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~-~~~~  188 (287)
T 3qou_A          111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDT-RYQG  188 (287)
T ss_dssp             HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSH-HHHH
T ss_pred             HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcch-HHHH
Confidence            345999999999998888877 578999999999999999999999999987 6889999999999999999953 3222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhH
Q 005817          231 EYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLR  310 (676)
Q Consensus       231 ~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (676)
                      ....+....                                                                  .+..+
T Consensus       189 ~~~~~~l~~------------------------------------------------------------------~~~~~  202 (287)
T 3qou_A          189 LVAQIELLX------------------------------------------------------------------QAADT  202 (287)
T ss_dssp             HHHHHHHHH------------------------------------------------------------------HHTSC
T ss_pred             HHHHHHHHh------------------------------------------------------------------hcccC
Confidence            222221110                                                                  01234


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC--hhhHHHHHHHhccccCCCCCCCcCc
Q 005817          311 VLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD--PKYWDWLARLKMTDSVSKDGTSEDI  388 (676)
Q Consensus       311 ~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~--~~~w~~la~~~~~~~~~~~~~~~~~  388 (676)
                      .|...|++++...|++.+.+..+-.++...   +..+.+...+.++++..|++  +.+|..++..+..            
T Consensus       203 ~a~~~l~~al~~~P~~~~~~~~la~~l~~~---g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~------------  267 (287)
T 3qou_A          203 PEIQQLQQQVAENPEDAALATQLALQLHQV---GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA------------  267 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH------------
T ss_pred             ccHHHHHHHHhcCCccHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH------------
Confidence            567889999999999998888877666543   36789999999999999998  7789999888754            


Q ss_pred             chhHHHHHHHHHHHHhhc
Q 005817          389 VPSQMQKAIQVYEEALKN  406 (676)
Q Consensus       389 ~~~~~~~A~~~ye~al~~  406 (676)
                       .++.+.|...|++++..
T Consensus       268 -~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          268 -LGTGDALASXYRRQLYA  284 (287)
T ss_dssp             -HCTTCHHHHHHHHHHHH
T ss_pred             -cCCCCcHHHHHHHHHHH
Confidence             46678889999988753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.64  E-value=2.4e-06  Score=82.71  Aligned_cols=188  Identities=14%  Similarity=0.047  Sum_probs=124.0

Q ss_pred             hHHHhhhHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh---hHHHHHHHhcc
Q 005817          303 LFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK---YWDWLARLKMT  376 (676)
Q Consensus       303 ~~~~~~~~~a~~iy~~Al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~---~w~~la~~~~~  376 (676)
                      .+..++++.|...|+++++..|++.   ..+..+..++.   ..+..+.+...++++++.+|+++.   ++..++..+..
T Consensus        14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~---~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~   90 (225)
T 2yhc_A           14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY---KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA   90 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence            3445789999999999999988764   23333333332   234688999999999999999975   57777766543


Q ss_pred             ccCCC----CCCC-cCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHH--HHHhcCccccccCCCCChhhhhhHHHHH
Q 005817          377 DSVSK----DGTS-EDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFL--MDMIAPKKEETRDSELPSHVEHYISHLL  448 (676)
Q Consensus       377 ~~~~~----~~~~-~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~a~  448 (676)
                      .+...    .... .....++.++|...|+++++..|... .+.......  ..........   .+......|++..|+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~---~a~~~~~~~~~~~A~  167 (225)
T 2yhc_A           91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYS---VAEYYTERGAWVAVV  167 (225)
T ss_dssp             HHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTCHHHHH
T ss_pred             hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCcHHHHH
Confidence            11000    0000 00114789999999999999988654 333221110  0000000000   000001257789999


Q ss_pred             HHHHHHHHcCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817          449 TVYEKAEAMGCLTE---DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV  497 (676)
Q Consensus       449 ~iye~al~~~p~~~---~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~  497 (676)
                      ..|++++...|.++   +.+...+..+.+.|++++|+..++++. ...|++.
T Consensus       168 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~-~~~~~~~  218 (225)
T 2yhc_A          168 NRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA-ANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCCSCCC
T ss_pred             HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhCCCch
Confidence            99999999999875   679999999999999999999999988 7777653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.63  E-value=2.2e-07  Score=81.26  Aligned_cols=116  Identities=9%  Similarity=-0.058  Sum_probs=95.3

Q ss_pred             hcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCC
Q 005817          358 RDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSEL  436 (676)
Q Consensus       358 ~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~  436 (676)
                      ..+|+..+.|...|..++.             .+++++|+..|+++++..|... .|.........              
T Consensus         7 ~inP~~a~~~~~~G~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--------------   59 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFK-------------KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK--------------   59 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------
T ss_pred             HHCHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh--------------
Confidence            3456666777778887776             5789999999999999988754 44433333322              


Q ss_pred             ChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817          437 PSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (676)
Q Consensus       437 ~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (676)
                          .|.++.|...|++|+..+|.++..|...+..+...|++++|...+++++ +..|++...+.....
T Consensus        60 ----~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~l~P~~~~a~~~l~~  123 (126)
T 4gco_A           60 ----LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL-QVDPSNEEAREGVRN  123 (126)
T ss_dssp             ----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHH
T ss_pred             ----hccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCcCCHHHHHHHHH
Confidence                4778999999999999999999999999999999999999999999999 899999888776543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.63  E-value=4.1e-07  Score=90.36  Aligned_cols=224  Identities=14%  Similarity=0.068  Sum_probs=137.1

Q ss_pred             CchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHH
Q 005817          173 NGRMKKVLAQVIRF--------HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC-----PTSEELWVEYLRMELTY  239 (676)
Q Consensus       173 ~~~~~~~~~ral~~--------~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~-----p~~~~lW~~y~~~e~~~  239 (676)
                      ...+...|++|+..        +|..+.+|...+.... ..|+++.|...|++++...     ++++.....+..+-..+
T Consensus        17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~   95 (283)
T 3edt_B           17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY   95 (283)
T ss_dssp             SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence            35677777777763        3556778888888876 6889999999999999885     44343333332221111


Q ss_pred             HHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHH
Q 005817          240 LNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGA  319 (676)
Q Consensus       240 ~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~A  319 (676)
                      .                                                                ..++++.|...|++|
T Consensus        96 ~----------------------------------------------------------------~~g~~~~A~~~~~~a  111 (283)
T 3edt_B           96 G----------------------------------------------------------------KRGKYKEAEPLCKRA  111 (283)
T ss_dssp             H----------------------------------------------------------------TTTCHHHHHHHHHHH
T ss_pred             H----------------------------------------------------------------HhccHHHHHHHHHHH
Confidence            0                                                                013567788888888


Q ss_pred             HhcC--------CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhc--------CCCChhhHHHHHHHhccccCCCCC
Q 005817          320 VEAL--------PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRD--------FLVDPKYWDWLARLKMTDSVSKDG  383 (676)
Q Consensus       320 l~~~--------p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~--------~p~~~~~w~~la~~~~~~~~~~~~  383 (676)
                      +...        |.....+..+..++   ...+..+.+...+++++..        .|....++..+|..+..       
T Consensus       112 l~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------  181 (283)
T 3edt_B          112 LEIREKVLGKFHPDVAKQLNNLALLC---QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK-------  181 (283)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHH---HTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-------
Confidence            8762        33333333333332   2234577888888888876        45556678888888865       


Q ss_pred             CCcCcchhHHHHHHHHHHHHhhccCc----------hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817          384 TSEDIVPSQMQKAIQVYEEALKNVPS----------SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (676)
Q Consensus       384 ~~~~~~~~~~~~A~~~ye~al~~~~~----------~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~  453 (676)
                            .+++++|...|+++++..+.          ...|...........   ...         ....+..+...++.
T Consensus       182 ------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~  243 (283)
T 3edt_B          182 ------QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKD---KRR---------DSAPYGEYGSWYKA  243 (283)
T ss_dssp             ------HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTC---CCC---------C------------C
T ss_pred             ------cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCC---chh---------HHHHHHHHHHHHHh
Confidence                  57899999999999975321          114433322222110   000         01234445555554


Q ss_pred             HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       454 al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      .....|.....+...+.++...|++++|..++++++
T Consensus       244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  279 (283)
T 3edt_B          244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS  279 (283)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444445567789999999999999999999999998

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.61  E-value=6e-07  Score=78.48  Aligned_cols=95  Identities=19%  Similarity=0.103  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....|...|++|+...|.+..+|...+......| +..+...|++++.++|+++..|...+.... ..|+++.|...|++
T Consensus        28 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~  106 (126)
T 4gco_A           28 DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV-AMREWSKAQRAYED  106 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence            3678999999999999999999999999988887 578999999999999999999999999886 68899999999999


Q ss_pred             HHHhCCCCHHHHHHHHH
Q 005817          218 GLRVCPTSEELWVEYLR  234 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~  234 (676)
                      +++.+|++.+++..+.+
T Consensus       107 al~l~P~~~~a~~~l~~  123 (126)
T 4gco_A          107 ALQVDPSNEEAREGVRN  123 (126)
T ss_dssp             HHHHCTTCHHHHHHHHH
T ss_pred             HHHHCcCCHHHHHHHHH
Confidence            99999999988876654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.61  E-value=3.7e-05  Score=82.97  Aligned_cols=81  Identities=16%  Similarity=0.048  Sum_probs=42.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHH-H--HhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCC
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTL-Y--LQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP  518 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l-~--~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p  518 (676)
                      +++++|...|+++.   |.++..+...+.+ +  ...+++++|...|++++ .  +.++..+.....++.. |.   ..|
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~--~g~~~A~~~Lg~~y~~-G~---g~~  300 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-A--ADQPRAELLLGKLYYE-GK---WVP  300 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-H--TTCHHHHHHHHHHHHH-CS---SSC
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHc-CC---CCC
Confidence            35566666666665   5555666666655 3  34566666666666666 2  2344444444444432 21   000


Q ss_pred             ChhchHHHHHHHHHHH
Q 005817          519 SKADILSIFELLKCIL  534 (676)
Q Consensus       519 ~~~~~~~~~~~f~~Al  534 (676)
                        .+.+++.+.|++|.
T Consensus       301 --~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          301 --ADAKAAEAHFEKAV  314 (452)
T ss_dssp             --CCHHHHHHHHHTTT
T ss_pred             --CCHHHHHHHHHHHh
Confidence              14566666666665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.61  E-value=3.6e-06  Score=81.48  Aligned_cols=192  Identities=16%  Similarity=0.024  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817          158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP---GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (676)
Q Consensus       158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~---~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~  233 (676)
                      ...+...+......| +..+...|++++..+|.++   ..|...+...+ ..|+++.|...|+++++.+|+++.+-..+.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            344445554555555 5889999999999999874   68888888776 688999999999999999999876433333


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (676)
Q Consensus       234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (676)
                      .+...+...  .+. .+.                        .+..+..                   .....++.+.|.
T Consensus        83 ~~g~~~~~~--~~~-~~~------------------------~~~~~~~-------------------~~~~~~~~~~A~  116 (225)
T 2yhc_A           83 MRGLTNMAL--DDS-ALQ------------------------GFFGVDR-------------------SDRDPQQARAAF  116 (225)
T ss_dssp             HHHHHHHHH--HC----------------------------------------------------------CCHHHHHHH
T ss_pred             HHHHHHHhh--hhh-hhh------------------------hhhccch-------------------hhcCcHHHHHHH
Confidence            333222110  000 000                        0000000                   000124678999


Q ss_pred             HHHHHHHhcCCCchhHHHHHHH--------------HHHHhcccCcHHHHHHHHHHHHhcCCCCh---hhHHHHHHHhcc
Q 005817          314 TIYSGAVEALPSSFNLRQRFFE--------------IVEATNLAQSDDMHDKILSDMQRDFLVDP---KYWDWLARLKMT  376 (676)
Q Consensus       314 ~iy~~Al~~~p~~~~~~~~~~~--------------~~~~fe~~~~~~~a~~il~~~~~~~p~~~---~~w~~la~~~~~  376 (676)
                      ..|+++++..|++...+.....              +...+...+....+...++++++.+|+++   .++..++..+..
T Consensus       117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~  196 (225)
T 2yhc_A          117 SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ  196 (225)
T ss_dssp             HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence            9999999999988655432211              00111112457789999999999999986   568888888876


Q ss_pred             ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc
Q 005817          377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS  409 (676)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~  409 (676)
                                   .++.+.|+..|+.+....|+
T Consensus       197 -------------~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          197 -------------MQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             -------------TTCHHHHHHHHHHHHHCCSC
T ss_pred             -------------cCCcHHHHHHHHHHHhhCCC
Confidence                         57899999999988877664

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.60  E-value=1.1e-07  Score=86.17  Aligned_cols=92  Identities=7%  Similarity=-0.125  Sum_probs=81.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Q 005817          145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (676)
Q Consensus       145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p  223 (676)
                      ..|++++...|++...|...+..+.+.| +..+...|++++..+|.++..|...+.... ..|+++.|...|+++++..|
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P  101 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGK  101 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCC
Confidence            4567888889999999999998888877 589999999999999999999999999886 68899999999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 005817          224 TSEELWVEYLRMEL  237 (676)
Q Consensus       224 ~~~~lW~~y~~~e~  237 (676)
                      +++.+|...+....
T Consensus       102 ~~~~~~~~lg~~~~  115 (151)
T 3gyz_A          102 NDYTPVFHTGQCQL  115 (151)
T ss_dssp             SCCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHH
Confidence            99998887776543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.59  E-value=6.1e-07  Score=100.12  Aligned_cols=67  Identities=10%  Similarity=-0.002  Sum_probs=31.7

Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR  509 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~  509 (676)
                      |++++|...|++++..+|.++..|...+..+...|++++|...+++++ +..|++...|..++.+...
T Consensus        71 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~  137 (568)
T 2vsy_A           71 QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH-QLLPEEPYITAQLLNWRRR  137 (568)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444 4444444444444444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.58  E-value=5.1e-07  Score=81.40  Aligned_cols=91  Identities=7%  Similarity=-0.148  Sum_probs=81.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Q 005817          145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (676)
Q Consensus       145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p  223 (676)
                      ..|++++...|.+...|...+..+...| +..+...|++++...|+++..|...+.... ..|+++.|...|++++...|
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCC
Confidence            4688999999999999999999888877 588999999999999999999999998886 68899999999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 005817          224 TSEELWVEYLRME  236 (676)
Q Consensus       224 ~~~~lW~~y~~~e  236 (676)
                      +++.+|...+...
T Consensus        87 ~~~~~~~~lg~~~   99 (148)
T 2vgx_A           87 XEPRFPFHAAECL   99 (148)
T ss_dssp             TCTHHHHHHHHHH
T ss_pred             CCchHHHHHHHHH
Confidence            9988887666543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.58  E-value=8e-05  Score=87.76  Aligned_cols=161  Identities=11%  Similarity=0.078  Sum_probs=99.7

Q ss_pred             HhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHH
Q 005817          339 ATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTK  418 (676)
Q Consensus       339 ~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~  418 (676)
                      .++..+.++.|...|..+        ..|..++..+..             .++++.|++.|.+|.    +...|.....
T Consensus      1204 ~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvk-------------Lge~q~AIEaarKA~----n~~aWkev~~ 1258 (1630)
T 1xi4_A         1204 RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH-------------LGEYQAAVDGARKAN----STRTWKEVCF 1258 (1630)
T ss_pred             HHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHH-------------hCCHHHHHHHHHHhC----CHHHHHHHHH
Confidence            333334566777777764        357777777654             466888888888773    2345644333


Q ss_pred             HHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817          419 FLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ  498 (676)
Q Consensus       419 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~  498 (676)
                      .+.+                  .+.+..|+..... +.   .+++.....+.++...|.+++|+.+++.++ +..|.+..
T Consensus      1259 acve------------------~~Ef~LA~~cgl~-Ii---v~~deLeeli~yYe~~G~feEAI~LlE~aL-~LeraH~g 1315 (1630)
T 1xi4_A         1259 ACVD------------------GKEFRLAQMCGLH-IV---VHADELEELINYYQDRGYFEELITMLEAAL-GLERAHMG 1315 (1630)
T ss_pred             HHhh------------------hhHHHHHHHHHHh-hh---cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccChhHhH
Confidence            3322                  2445555554432 32   245556678888889999999999999999 77788888


Q ss_pred             HHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcCh----hhhHHHHHHHHHHHHhh
Q 005817          499 LWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA----LESESLWLMALKFFMNQ  556 (676)
Q Consensus       499 lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~----~~~~~lW~~~l~~~~~~  556 (676)
                      +|.....+..+...        +++.+..+.|...+. +|+    -+..-+|..+.-.|...
T Consensus      1316 mftELaiLyaKy~p--------eklmEhlk~f~~rin-i~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A         1316 MFTELAILYSKFKP--------QKMREHLELFWSRVN-IPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred             HHHHHHHHHHhCCH--------HHHHHHHHHHHHhcc-cchHhHHHHHHHHHHHHHHHHHhc
Confidence            88888777776532        245556666776654 232    12245777655444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.57  E-value=1.4e-06  Score=83.42  Aligned_cols=160  Identities=11%  Similarity=0.052  Sum_probs=114.9

Q ss_pred             hHHHhhhHHHHHHHHHHHhcCCCchhHHHH----------------HHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhh
Q 005817          303 LFREQGLRVLQTIYSGAVEALPSSFNLRQR----------------FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKY  366 (676)
Q Consensus       303 ~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~----------------~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~  366 (676)
                      .+..++++.|...|+++++..|++.+.+..                +-.++...   +..+.+...++++++..|+++.+
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~   90 (208)
T 3urz_A           14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN---RNYDKAYLFYKELLQKAPNNVDC   90 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCHHH
Confidence            344578999999999999999988777655                44444332   46789999999999999999999


Q ss_pred             HHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHH
Q 005817          367 WDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS  445 (676)
Q Consensus       367 w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  445 (676)
                      |..+|..+..             .+++++|...|+++++..|... .|...........                .....
T Consensus        91 ~~~lg~~~~~-------------~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~----------------~~~~~  141 (208)
T 3urz_A           91 LEACAEMQVC-------------RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA----------------EQEKK  141 (208)
T ss_dssp             HHHHHHHHHH-------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----------------HHHHH
T ss_pred             HHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh----------------HHHHH
Confidence            9999999876             5889999999999999988754 4433322221100                12345


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817          446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (676)
Q Consensus       446 ~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (676)
                      .+...|.+++...|. ...|...+..+...|++++|+..+++++ +..|++
T Consensus       142 ~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al-~l~P~~  190 (208)
T 3urz_A          142 KLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVI-LRFPST  190 (208)
T ss_dssp             HHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHT-TTSCCH
T ss_pred             HHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCH
Confidence            666777776543221 2234445555667899999999999999 899985

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.56  E-value=1.9e-07  Score=84.58  Aligned_cols=113  Identities=11%  Similarity=-0.105  Sum_probs=95.3

Q ss_pred             HHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccc
Q 005817          353 LSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEET  431 (676)
Q Consensus       353 l~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~  431 (676)
                      +.+++...|+++..|..+|..+..             .+++++|...|++++...|... .|.........         
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~-------------~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~---------   82 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYN-------------KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI---------   82 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------
Confidence            345566778888888888888765             5889999999999999988755 56544333332         


Q ss_pred             cCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817          432 RDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV  497 (676)
Q Consensus       432 ~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~  497 (676)
                               .|.++.|...|++|+..+|.++..|...+..+...|++++|+..|++++ +..|++.
T Consensus        83 ---------~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al-~l~~~~~  138 (151)
T 3gyz_A           83 ---------KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI-QHSNDEK  138 (151)
T ss_dssp             ---------TTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCCHH
T ss_pred             ---------HccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHH
Confidence                     4779999999999999999999999999999999999999999999999 8888875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.56  E-value=2.1e-06  Score=74.36  Aligned_cols=131  Identities=18%  Similarity=0.138  Sum_probs=105.6

Q ss_pred             hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhH
Q 005817          366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYI  444 (676)
Q Consensus       366 ~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~  444 (676)
                      .|..++..+..             .+++++|...|+++++..|... .|...+.....                  .+++
T Consensus         3 ~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------~~~~   51 (136)
T 2fo7_A            3 AWYNLGNAYYK-------------QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK------------------QGDY   51 (136)
T ss_dssp             HHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HTCH
T ss_pred             HHHHHHHHHHH-------------cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH------------------hcCH
Confidence            45666666654             4779999999999998776543 44333333322                  3678


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchH
Q 005817          445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL  524 (676)
Q Consensus       445 ~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~  524 (676)
                      +.|...|++++..+|.++..|...+..+...|++++|..++++++ ...|.+...|...+.+....+          +.+
T Consensus        52 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~----------~~~  120 (136)
T 2fo7_A           52 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQG----------DYD  120 (136)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTT----------CHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHc----------cHH
Confidence            999999999999999999999999999999999999999999999 788999999999888887665          478


Q ss_pred             HHHHHHHHHHhhcC
Q 005817          525 SIFELLKCILTKVS  538 (676)
Q Consensus       525 ~~~~~f~~Al~~~~  538 (676)
                      ++.+.|.+++...|
T Consensus       121 ~A~~~~~~~~~~~~  134 (136)
T 2fo7_A          121 EAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccCC
Confidence            88889999887554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.53  E-value=3.3e-06  Score=84.99  Aligned_cols=192  Identities=9%  Similarity=0.023  Sum_probs=133.9

Q ss_pred             CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817          155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (676)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~  233 (676)
                      |.+...|...+..+...| +..+...|++++..+|+++.+|...+.... ..|+++.|...|+++++..|++..+|..++
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLG   79 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            567788888888887777 578999999999999999999999999886 688999999999999999999888776665


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (676)
Q Consensus       234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (676)
                      ......                                                                   ++++.|.
T Consensus        80 ~~~~~~-------------------------------------------------------------------g~~~~A~   92 (281)
T 2c2l_A           80 QCQLEM-------------------------------------------------------------------ESYDEAI   92 (281)
T ss_dssp             HHHHHT-------------------------------------------------------------------TCHHHHH
T ss_pred             HHHHHc-------------------------------------------------------------------CCHHHHH
Confidence            443221                                                                   2567788


Q ss_pred             HHHHHHHhcCCCch-----hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCc
Q 005817          314 TIYSGAVEALPSSF-----NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI  388 (676)
Q Consensus       314 ~iy~~Al~~~p~~~-----~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~  388 (676)
                      ..|++|++..|++.     .++..+     ..      ..............|.++.+...++.+.              
T Consensus        93 ~~~~~al~l~p~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~~~i~~~l~~l~--------------  147 (281)
T 2c2l_A           93 ANLQRAYSLAKEQRLNFGDDIPSAL-----RI------AKKKRWNSIEERRIHQESELHSYLTRLI--------------  147 (281)
T ss_dssp             HHHHHHHHHHHHTTCCCCSHHHHHH-----HH------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--------------
T ss_pred             HHHHHHHHhCccchhhHHHHHHHHH-----HH------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--------------
Confidence            88999988776542     222211     10      1112222233356778888777776654              


Q ss_pred             chhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc
Q 005817          389 VPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (676)
Q Consensus       389 ~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~  457 (676)
                       .++.++|.+.|+++++..|... +..........                 ..+.++.+..+|+++...
T Consensus       148 -~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----------------~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          148 -AAERERELEECQRNHEGHEDDGHIRAQQACIEAK-----------------HDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             -HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH-----------------HHHHHHHHHHHHHHSSCT
T ss_pred             -HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHH-----------------HHHHHHHHHHHHHhhhcc
Confidence             4788999999999998877654 22221111111                 124567788888877654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.52  E-value=2.7e-07  Score=82.35  Aligned_cols=91  Identities=7%  Similarity=-0.133  Sum_probs=77.6

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Q 005817          145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (676)
Q Consensus       145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p  223 (676)
                      ..|++++...|.+...|...+..+...| +..+...|++++..+|.++.+|...+.... ..|+++.|...|++++...|
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCC
Confidence            4677888889999999999988888777 588999999999999999999999999886 68899999999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 005817          224 TSEELWVEYLRME  236 (676)
Q Consensus       224 ~~~~lW~~y~~~e  236 (676)
                      +++.+|..++...
T Consensus        84 ~~~~~~~~lg~~~   96 (142)
T 2xcb_A           84 NEPRFPFHAAECH   96 (142)
T ss_dssp             TCTHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9988887666543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.52  E-value=8.5e-05  Score=75.82  Aligned_cols=252  Identities=12%  Similarity=0.082  Sum_probs=170.2

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN----------VTAARALMQNGLRVCPTSEELWVEYLRMELTYLNK  242 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~----------~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~  242 (676)
                      ..++...++.+|..+|.+..+|..-..... ..+.          +..+...++.++..+|.+..+|..-..+....   
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~-~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l---  121 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQ-HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL---  121 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHH-HhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc---
Confidence            358999999999999999999988766553 2222          67899999999999999999998765432211   


Q ss_pred             HHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhc
Q 005817          243 LKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEA  322 (676)
Q Consensus       243 ~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~  322 (676)
                              +.                                                      ..++.+..+++++++.
T Consensus       122 --------~~------------------------------------------------------~~~~~EL~~~~k~l~~  139 (331)
T 3dss_A          122 --------PE------------------------------------------------------PNWARELELCARFLEA  139 (331)
T ss_dssp             --------SS------------------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred             --------Cc------------------------------------------------------ccHHHHHHHHHHHHHh
Confidence                    00                                                      0235678899999999


Q ss_pred             CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCC-CCCCcCcchhHHHHHHHHHH
Q 005817          323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK-DGTSEDIVPSQMQKAIQVYE  401 (676)
Q Consensus       323 ~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~-~~~~~~~~~~~~~~A~~~ye  401 (676)
                      .|.+...|..-.-++..++.  ..+.+...+++++..+|.+..+|...+.......... .+.......+.++++.+.+.
T Consensus       140 dprNy~AW~~R~~vl~~l~~--~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~  217 (331)
T 3dss_A          140 DERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ  217 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHH
Confidence            99998888654444444431  2467778889999999999999988876653321100 00000011367899999999


Q ss_pred             HHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH--HHHHHH---hc
Q 005817          402 EALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR--YVTLYL---QL  475 (676)
Q Consensus       402 ~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~--~~~l~~---~~  475 (676)
                      +++...|.+. .|. |..+......... +  +   .....+.++++++.++++++..|.+  .|..  .+.+..   ..
T Consensus       218 ~ai~~~P~d~SaW~-Y~r~ll~~~~~~~-~--~---~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~~~~~~~~~  288 (331)
T 3dss_A          218 NAFFTDPNDQSAWF-YHRWLLGAGSGRC-E--L---SVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPL  288 (331)
T ss_dssp             HHHHHSTTCHHHHH-HHHHHHHSSSCGG-G--C---CHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTT
T ss_pred             HHHHhCCCCHHHHH-HHHHHHHhccCcc-c--c---chHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHHHHHhhccc
Confidence            9999999766 664 4555554321100 0  0   0112366889999999999999987  3543  232221   34


Q ss_pred             CCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817          476 GKLDEARKLAAKLCSGKLSDSVQLWLL  502 (676)
Q Consensus       476 ~~~~~A~~l~~~al~~~~P~~~~lW~~  502 (676)
                      +..++++..+.+++ +..|--..-|..
T Consensus       289 ~~~~~~~~~l~~l~-~~Dp~r~~~y~d  314 (331)
T 3dss_A          289 LYEKETLQYFSTLK-AVDPMRAAYLDD  314 (331)
T ss_dssp             TTHHHHHHHHHHHH-HHCGGGHHHHHH
T ss_pred             ccHHHHHHHHHHHH-HhCcchhhHHHH
Confidence            66777888888888 777766555554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.52  E-value=4.9e-05  Score=77.98  Aligned_cols=259  Identities=12%  Similarity=0.098  Sum_probs=166.2

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALG  251 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~-~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~  251 (676)
                      ..++..+++++|..+|.+..+|..-..... ..| .++.+...++++|..+|.+..+|..-..+....          .+
T Consensus        70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~-~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l----------~~  138 (349)
T 3q7a_A           70 SERALELTEIIVRMNPAHYTVWQYRFSLLT-SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI----------SP  138 (349)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH----------CC
T ss_pred             CHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh----------cC
Confidence            467899999999999999999998887764 455 699999999999999999999998765432211          00


Q ss_pred             cccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHH
Q 005817          252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ  331 (676)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~  331 (676)
                                                                             .+.+.+..+++++++..|.+...|.
T Consensus       139 -------------------------------------------------------~~~~~EL~~~~k~L~~dpkNy~AW~  163 (349)
T 3q7a_A          139 -------------------------------------------------------QDPVSEIEYIHGSLLPDPKNYHTWA  163 (349)
T ss_dssp             -------------------------------------------------------SCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred             -------------------------------------------------------CChHHHHHHHHHHHHhCCCCHHHHH
Confidence                                                                   0123567888999999999988886


Q ss_pred             HHHHHHHHhcccC-----cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhc
Q 005817          332 RFFEIVEATNLAQ-----SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN  406 (676)
Q Consensus       332 ~~~~~~~~fe~~~-----~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~  406 (676)
                      .-.-++..++...     ....+...++++++.+|.+..+|...+.........      ......++++.+.+++++..
T Consensus       164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~------~~~~~~~~eELe~~~~aI~~  237 (349)
T 3q7a_A          164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA------ETSSRSLQDELIYILKSIHL  237 (349)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC------CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc------ccchHHHHHHHHHHHHHHHh
Confidence            5433444333110     112566788999999999999999888775432110      00124578999999999999


Q ss_pred             cCchh-HHHHHHHHHHHHhcCccccccC----CCCChhhhhhHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHhc
Q 005817          407 VPSSM-IFDLYTKFLMDMIAPKKEETRD----SELPSHVEHYISHLLTVYEKAEAM------GCLTEDIAHRYVTLYLQL  475 (676)
Q Consensus       407 ~~~~~-lw~~y~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~a~~iye~al~~------~p~~~~lw~~~~~l~~~~  475 (676)
                      .|.+. .|. |..+.......... +.+    -.+.+...-......+.....+..      .+.++-.+--.++++...
T Consensus       238 ~P~n~SaW~-Ylr~Ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  315 (349)
T 3q7a_A          238 IPHNVSAWN-YLRGFLKHFSLPLV-PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQ  315 (349)
T ss_dssp             CTTCHHHHH-HHHHHHHHTTCCSG-GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHH-HHHHHHHhcCCCcc-cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhc
Confidence            99766 775 44554443211100 000    000000000011111111111111      145666777788899899


Q ss_pred             CCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817          476 GKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (676)
Q Consensus       476 ~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (676)
                      |+.++|.++++.+..+..|--...|.-++.
T Consensus       316 ~~~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          316 NRVDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             TCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence            999999999999875667777778877654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.48  E-value=1.2e-05  Score=84.44  Aligned_cols=189  Identities=10%  Similarity=-0.101  Sum_probs=118.6

Q ss_pred             hhHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCCh------hhHHHHHHHhccc
Q 005817          308 GLRVLQTIYSGAVEALPSSFN----LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDP------KYWDWLARLKMTD  377 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~p~~~~----~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~------~~w~~la~~~~~~  377 (676)
                      +++.|...|++|++..+....    ....+..+...+...+..+.|...+++++...|...      .++..+|..+.. 
T Consensus       158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-  236 (383)
T 3ulq_A          158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS-  236 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-
Confidence            566778888888876433221    111111121222222467788888888887665443      367778887765 


Q ss_pred             cCCCCCCCcCcchhHHHHHHHHHHHHhhccC---c-hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---S-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (676)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~---~-~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~  453 (676)
                                  .+++++|...|+++++..+   . ......+...-.-..               ..|++++|...|++
T Consensus       237 ------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~  289 (383)
T 3ulq_A          237 ------------QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY---------------KLGKIDKAHEYHSK  289 (383)
T ss_dssp             ------------TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---------------HTTCHHHHHHHHHH
T ss_pred             ------------CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH---------------HCCCHHHHHHHHHH
Confidence                        5789999999999998321   1 112222222211111               14778999999999


Q ss_pred             HHHcC-----CCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHH
Q 005817          454 AEAMG-----CLTEDIAHRYVTLYLQLGK---LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILS  525 (676)
Q Consensus       454 al~~~-----p~~~~lw~~~~~l~~~~~~---~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~  525 (676)
                      |+...     |.....+...+.++...|+   +++|..+++++-  ..|....++...+.+....|          +.++
T Consensus       290 al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g----------~~~~  357 (383)
T 3ulq_A          290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERK----------NFQK  357 (383)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTT----------CHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCC----------CHHH
Confidence            99862     2222334556777778888   788888887753  34556677777777777766          4788


Q ss_pred             HHHHHHHHHhh
Q 005817          526 IFELLKCILTK  536 (676)
Q Consensus       526 ~~~~f~~Al~~  536 (676)
                      +.+.|++|+..
T Consensus       358 A~~~~~~al~~  368 (383)
T 3ulq_A          358 ASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888888763

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.48  E-value=3.6e-06  Score=88.52  Aligned_cols=252  Identities=8%  Similarity=0.067  Sum_probs=156.5

Q ss_pred             HHhCCCCHHHHHH------HHHHHHHcc-CchHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          151 VMRFKGDIELWFK------YMEFCRQRK-NGRMKKVLAQVIRF---HPK---VPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       151 l~~~p~~~~lW~~------y~~~~~~~~-~~~~~~~~~ral~~---~P~---~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      +...|.+.+-+..      .+.+....| +..+...|++|+..   .|+   ...+|...+.... ..|+++.|...+++
T Consensus        90 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~  168 (383)
T 3ulq_A           90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQ  168 (383)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred             HHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence            3345555555544      333334445 57899999999987   333   3467777787775 68899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      |+...+....--...+......           |.                                             
T Consensus       169 al~~~~~~~~~~~~~~~~~~~l-----------g~---------------------------------------------  192 (383)
T 3ulq_A          169 AYEIYKEHEAYNIRLLQCHSLF-----------AT---------------------------------------------  192 (383)
T ss_dssp             HHHHHHTCSTTHHHHHHHHHHH-----------HH---------------------------------------------
T ss_pred             HHHHHHhCccchHHHHHHHHHH-----------HH---------------------------------------------
Confidence            9998775432011111111100           00                                             


Q ss_pred             hhhhhhHHHhhhHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHhcccCcHHHHHHHHHHHHh-----cC-CCChhhHH
Q 005817          298 QKSVDLFREQGLRVLQTIYSGAVEALPS---SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR-----DF-LVDPKYWD  368 (676)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~---~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~-----~~-p~~~~~w~  368 (676)
                          .....++++.|...|++|++..|.   .......+..+...+...+..+.|...+++++.     .. |....++.
T Consensus       193 ----~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          193 ----NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             ----HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             ----HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence                000114678889999999876432   222222222222222223467889999998888     45 66677888


Q ss_pred             HHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHH
Q 005817          369 WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS---SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS  445 (676)
Q Consensus       369 ~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~---~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  445 (676)
                      .+|..+..             .+++++|...|++|++..+.   ......+ ...-..+.. .++          ...+.
T Consensus       269 ~l~~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~l~~~~~~-~~~----------~~~~~  323 (383)
T 3ulq_A          269 LITQIHYK-------------LGKIDKAHEYHSKGMAYSQKAGDVIYLSEF-EFLKSLYLS-GPD----------EEAIQ  323 (383)
T ss_dssp             HHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHH-HHHHHHHTS-SCC----------HHHHH
T ss_pred             HHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHhC-CCc----------HHHHH
Confidence            99998876             57899999999999986542   1111111 222222211 100          13367


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       446 ~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      +|..+++++ ...|...+++...+.++...|++++|...+++++
T Consensus       324 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          324 GFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            788888776 2224446688889999999999999999999998

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.47  E-value=5.9e-07  Score=80.96  Aligned_cols=116  Identities=11%  Similarity=-0.016  Sum_probs=94.9

Q ss_pred             HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcccc
Q 005817          352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEE  430 (676)
Q Consensus       352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d  430 (676)
                      .+++++...|++...|..+|..++.             .+++++|...|++++...|... .|.........        
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--------   67 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQ-------------SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA--------   67 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH--------
Confidence            4566677777777788888887765             5789999999999999888654 55444333332        


Q ss_pred             ccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHH
Q 005817          431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL  499 (676)
Q Consensus       431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l  499 (676)
                                .|.++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|+++..
T Consensus        68 ----------~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~  125 (148)
T 2vgx_A           68 ----------MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ-ELIANXPEF  125 (148)
T ss_dssp             ----------TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHTTCGGG
T ss_pred             ----------HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCCCcc
Confidence                      4779999999999999999999999999999999999999999999999 777776544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.45  E-value=2.8e-06  Score=78.59  Aligned_cols=98  Identities=9%  Similarity=0.073  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhCCCH--HHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW-EFDHNLNV--TAARAL  214 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~-e~~~~~~~--~~Ar~~  214 (676)
                      ....+...|++++...|.+...|..++..+...| +..+...|++++...|.++.+|..++.. .. ..|+.  +.|...
T Consensus        25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~~~~~~~~~A~~~  103 (177)
T 2e2e_A           25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY-QASQHMTAQTRAM  103 (177)
T ss_dssp             --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHH
Confidence            3456778999999999999999999999998877 5789999999999999999999999988 54 67788  999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Q 005817          215 MQNGLRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       215 ~~ral~~~p~~~~lW~~y~~~e~  237 (676)
                      |++++...|.+..+|..++....
T Consensus       104 ~~~al~~~p~~~~~~~~la~~~~  126 (177)
T 2e2e_A          104 IDKALALDSNEITALMLLASDAF  126 (177)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHH
Confidence            99999999999888877665543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.44  E-value=3.8e-06  Score=84.54  Aligned_cols=195  Identities=9%  Similarity=-0.071  Sum_probs=134.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHH
Q 005817          188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEK  267 (676)
Q Consensus       188 P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~  267 (676)
                      |.++..|...+...+ ..|+++.|...|++++...|++..+|...+......                            
T Consensus         1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------------------------   51 (281)
T 2c2l_A            1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM----------------------------   51 (281)
T ss_dssp             CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT----------------------------
T ss_pred             ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----------------------------
Confidence            667788888888876 688999999999999999999988887666543321                            


Q ss_pred             hhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHH
Q 005817          268 RWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDD  347 (676)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~  347 (676)
                                                             ++++.|...|++|++..|++...+..+-.++...   +..+
T Consensus        52 ---------------------------------------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~   89 (281)
T 2c2l_A           52 ---------------------------------------QQPEQALADCRRALELDGQSVKAHFFLGQCQLEM---ESYD   89 (281)
T ss_dssp             ---------------------------------------TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT---TCHH
T ss_pred             ---------------------------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHH
Confidence                                                   2567889999999999998877776665554432   3577


Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcC
Q 005817          348 MHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAP  426 (676)
Q Consensus       348 ~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~  426 (676)
                      .+...+.+++...|+++......+...+                ...++...........+... +...+..+.      
T Consensus        90 ~A~~~~~~al~l~p~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~------  147 (281)
T 2c2l_A           90 EAIANLQRAYSLAKEQRLNFGDDIPSAL----------------RIAKKKRWNSIEERRIHQESELHSYLTRLI------  147 (281)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSHHHHHH----------------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHhCccchhhHHHHHHHHH----------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------
Confidence            8889999988888876322111111110                11222222223333444433 333332221      


Q ss_pred             ccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHh
Q 005817          427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQL-GKLDEARKLAAKLC  489 (676)
Q Consensus       427 ~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~-~~~~~A~~l~~~al  489 (676)
                                    .|..++|.+.|++|+..+|.+..+......++.+. +.+++|..++.++.
T Consensus       148 --------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~  197 (281)
T 2c2l_A          148 --------------AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD  197 (281)
T ss_dssp             --------------HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             --------------HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                          36678999999999999998887777777777766 66888999999887

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.43  E-value=3.8e-07  Score=81.38  Aligned_cols=118  Identities=12%  Similarity=-0.053  Sum_probs=93.4

Q ss_pred             HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcccc
Q 005817          352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEE  430 (676)
Q Consensus       352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d  430 (676)
                      .+.+++...|++...+..+|..++.             .+++++|...|++++...|... .|.........        
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--------   64 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQ-------------AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS--------   64 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHH-------------HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--------
Confidence            4455566677777777888877765             5789999999999999888654 55444333332        


Q ss_pred             ccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817          431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL  501 (676)
Q Consensus       431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~  501 (676)
                                .|+++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.++..+.
T Consensus        65 ----------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~  124 (142)
T 2xcb_A           65 ----------LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR-ALAAAQPAHEA  124 (142)
T ss_dssp             ----------TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTCGGGHH
T ss_pred             ----------HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCcchHH
Confidence                      4779999999999999999999999999999999999999999999999 77787654443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.42  E-value=7.7e-06  Score=70.64  Aligned_cols=95  Identities=15%  Similarity=0.248  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...+..+|++++...|.+...|..++..+...| ...+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus        17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~   95 (136)
T 2fo7_A           17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKA   95 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence            567889999999999999999999998887776 578999999999999999999999999886 788999999999999


Q ss_pred             HHhCCCCHHHHHHHHHH
Q 005817          219 LRVCPTSEELWVEYLRM  235 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~  235 (676)
                      +...|.+..+|..++.+
T Consensus        96 ~~~~~~~~~~~~~la~~  112 (136)
T 2fo7_A           96 LELDPRSAEAWYNLGNA  112 (136)
T ss_dssp             HHHCTTCHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHH
Confidence            99999988877766554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.42  E-value=1.4e-06  Score=80.62  Aligned_cols=122  Identities=12%  Similarity=0.106  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHH-HHHHh
Q 005817          347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKF-LMDMI  424 (676)
Q Consensus       347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~-~~~~~  424 (676)
                      +.+...+++++...|+++.+|..+|..+..             .++++.|...|+++++..|... .|..+... ...  
T Consensus        27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~--   91 (177)
T 2e2e_A           27 EAQLQALQDKIRANPQNSEQWALLGEYYLW-------------QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ--   91 (177)
T ss_dssp             CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--
Confidence            345556666667777777788888887765             4789999999999999887654 55444443 222  


Q ss_pred             cCccccccCCCCChhhhhhH--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHH
Q 005817          425 APKKEETRDSELPSHVEHYI--SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW  500 (676)
Q Consensus       425 ~~~~~d~~~~~~~~~~~~~~--~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW  500 (676)
                                      .+.+  +.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...+
T Consensus        92 ----------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~  152 (177)
T 2e2e_A           92 ----------------ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM-DLNSPRINRT  152 (177)
T ss_dssp             ----------------TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCCTTSCHH
T ss_pred             ----------------cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH-hhCCCCccHH
Confidence                            2555  899999999999999999999999999999999999999999999 8888875544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.42  E-value=5.8e-06  Score=83.63  Aligned_cols=129  Identities=12%  Similarity=0.011  Sum_probs=82.5

Q ss_pred             cHHHHHHHHHHHHhcCCCC------hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhH--H---
Q 005817          345 SDDMHDKILSDMQRDFLVD------PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMI--F---  413 (676)
Q Consensus       345 ~~~~a~~il~~~~~~~p~~------~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~l--w---  413 (676)
                      ..+.+...+++++..+|.+      ..++..+|..+..             .+++++|+..|+++++..|....  |   
T Consensus       133 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~  199 (292)
T 1qqe_A          133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-------------DGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence            4566777777777766644      2456677777765             57899999999999998765331  1   


Q ss_pred             HHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH-----HHHHHHHHHH--hcCCHHHHHHHHH
Q 005817          414 DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED-----IAHRYVTLYL--QLGKLDEARKLAA  486 (676)
Q Consensus       414 ~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~-----lw~~~~~l~~--~~~~~~~A~~l~~  486 (676)
                      ..|...-.-..               ..|+++.|+..|++++..+|....     .+...+..+.  ..+++++|+..|+
T Consensus       200 ~~~~~lg~~~~---------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~  264 (292)
T 1qqe_A          200 DYFLKKGLCQL---------------AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD  264 (292)
T ss_dssp             HHHHHHHHHHH---------------HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHH---------------HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence            12322221111               147799999999999998887543     2333333333  4467999999999


Q ss_pred             HHhhccCCChHHHHHH
Q 005817          487 KLCSGKLSDSVQLWLL  502 (676)
Q Consensus       487 ~al~~~~P~~~~lW~~  502 (676)
                      +++ ...|....+|..
T Consensus       265 ~~~-~l~~~~~~~~~~  279 (292)
T 1qqe_A          265 NFM-RLDKWKITILNK  279 (292)
T ss_dssp             TSS-CCCHHHHHHHHH
T ss_pred             cCC-ccHHHHHHHHHH
Confidence            988 777777666655

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.42  E-value=8.9e-05  Score=79.95  Aligned_cols=315  Identities=11%  Similarity=0.034  Sum_probs=176.7

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-C---chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----CCHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-N---GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN----LNVTA  210 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~---~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~----~~~~~  210 (676)
                      ....+..+|+++...  ++...+.....+....| .   ..+...|.+++..   ++..+...+.......    ++.+.
T Consensus        18 ~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~   92 (452)
T 3e4b_A           18 DTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHE   92 (452)
T ss_dssp             HHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHH
Confidence            356788999999876  56666666666655544 3   6889999999977   5667777777433222    37889


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817          211 ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS  290 (676)
Q Consensus       211 Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (676)
                      |...|.+++...+  +..+..+..+......        ...+.          ....|......        ..++   
T Consensus        93 A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~--------~~~~~----------~a~~~~~~a~~--------~g~~---  141 (452)
T 3e4b_A           93 AESLLKKAFANGE--GNTLIPLAMLYLQYPH--------SFPNV----------NAQQQISQWQA--------AGYP---  141 (452)
T ss_dssp             HHHHHHHHHHTTC--SSCHHHHHHHHHHCGG--------GCTTC----------CHHHHHHHHHH--------HTCT---
T ss_pred             HHHHHHHHHHCCC--HHHHHHHHHHHHhCCC--------CCCCH----------HHHHHHHHHHH--------CCCH---
Confidence            9999999998554  3466666655433210        00000          00000000000        0000   


Q ss_pred             CCcchhhhhhhhhHH-----HhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh
Q 005817          291 QPENMESQKSVDLFR-----EQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK  365 (676)
Q Consensus       291 ~~~~~~~~~~~~~~~-----~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~  365 (676)
                          .........+.     +.+.+.+..+++.|....|.   .+..+-.++...+.....+.+...+.++....|.+..
T Consensus       142 ----~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~  214 (452)
T 3e4b_A          142 ----EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ  214 (452)
T ss_dssp             ----THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred             ----HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH
Confidence                00001111111     12556677788877776664   4444444554422112567788889999999999988


Q ss_pred             hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhH
Q 005817          366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYI  444 (676)
Q Consensus       366 ~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~  444 (676)
                      .+..++..+..+         ....+++++|...|+++.   |... .+...........               ..+++
T Consensus       215 ~~~~Lg~~y~~g---------~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~---------------~~~d~  267 (452)
T 3e4b_A          215 RVDSVARVLGDA---------TLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFP---------------ELGDV  267 (452)
T ss_dssp             HHHHHHHHHTCG---------GGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSG---------------GGCCH
T ss_pred             HHHHHHHHHhCC---------CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCC---------------CCCCH
Confidence            888999888542         123468999999999998   4332 2222222212111               13678


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCC
Q 005817          445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG-----KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS  519 (676)
Q Consensus       445 ~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~-----~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~  519 (676)
                      ++|...|++|...+  ++..+...+.++. .|     ++++|...|++++    |.++..+.....++.. |..   .+ 
T Consensus       268 ~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~-G~g---~~-  335 (452)
T 3e4b_A          268 EQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRR-GYL---GK-  335 (452)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHT-TTT---SS-
T ss_pred             HHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHC-CCC---CC-
Confidence            99999999999764  7788888888887 55     9999999999987    7777777777766654 210   01 


Q ss_pred             hhchHHHHHHHHHHHhh
Q 005817          520 KADILSIFELLKCILTK  536 (676)
Q Consensus       520 ~~~~~~~~~~f~~Al~~  536 (676)
                       .|.+++.+.|++|...
T Consensus       336 -~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          336 -VYPQKALDHLLTAARN  351 (452)
T ss_dssp             -CCHHHHHHHHHHHHTT
T ss_pred             -cCHHHHHHHHHHHHhh
Confidence             2577777777777653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.42  E-value=2.2e-06  Score=85.03  Aligned_cols=151  Identities=13%  Similarity=0.073  Sum_probs=100.7

Q ss_pred             hhHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcC--------CCChhhHHHHH
Q 005817          308 GLRVLQTIYSGAVEAL--------PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF--------LVDPKYWDWLA  371 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~--------p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~--------p~~~~~w~~la  371 (676)
                      +.+.|...|++|++..        |.....+..+-.++..   .+..+.+...+++++...        |....++..+|
T Consensus        16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD---QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            3445566666666532        3333344433333322   245778888888887664        44466788888


Q ss_pred             HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc-----Cc-hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHH
Q 005817          372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV-----PS-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS  445 (676)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~-----~~-~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  445 (676)
                      ..+..             .+++++|...|++++...     +. ......|...-.-..               ..|+++
T Consensus        93 ~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------~~g~~~  144 (283)
T 3edt_B           93 VLYGK-------------RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ---------------NQGKAE  144 (283)
T ss_dssp             HHHHT-------------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------TTTCHH
T ss_pred             HHHHH-------------hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH---------------HcCCHH
Confidence            88865             578999999999999863     21 112222222211111               147789


Q ss_pred             HHHHHHHHHHHc--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          446 HLLTVYEKAEAM--------GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       446 ~a~~iye~al~~--------~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      +|...|++++..        .|.....+...+..+...|++++|...+++++
T Consensus       145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999987        55567789999999999999999999999998

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.40  E-value=2.7e-06  Score=73.76  Aligned_cols=113  Identities=14%  Similarity=0.028  Sum_probs=91.1

Q ss_pred             ChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhh
Q 005817          363 DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVE  441 (676)
Q Consensus       363 ~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~  441 (676)
                      +...|...|..++.             .+++++|...|+++++..|... .|.........                  .
T Consensus         3 ~a~~~~~~g~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~------------------~   51 (126)
T 3upv_A            3 KAEEARLEGKEYFT-------------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK------------------L   51 (126)
T ss_dssp             HHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------T
T ss_pred             hHHHHHHHHHHHHH-------------hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------h
Confidence            34567777777765             5789999999999999888654 44443333332                  3


Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC------CChHHHHHHHHHHH
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL------SDSVQLWLLRISVE  507 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~------P~~~~lW~~~i~l~  507 (676)
                      |.++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...      |.+..++.......
T Consensus        52 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR-TKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH-HhCcccCCchhHHHHHHHHHHHH
Confidence            679999999999999999999999999999999999999999999999 778      88877777655443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.40  E-value=5.1e-06  Score=70.16  Aligned_cols=96  Identities=14%  Similarity=0.056  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...+...|++++...|.+...|..++..+...| +..+...+++++...|.++.+|...+.... ..|+++.|...|+++
T Consensus        20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRTYEEG   98 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence            577899999999999999999999999988777 578999999999999999999999999886 688999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHH
Q 005817          219 LRVCPTSEELWVEYLRME  236 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e  236 (676)
                      +...|+++.+|..+..+.
T Consensus        99 ~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           99 LKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCTTCHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHhh
Confidence            999999999988877654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.36  E-value=7.1e-05  Score=78.03  Aligned_cols=265  Identities=8%  Similarity=-0.071  Sum_probs=163.6

Q ss_pred             Hcc-CchHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHH
Q 005817          170 QRK-NGRMKKVLAQVIRFHPKVPG-----VWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVE-YLRMELTYLNK  242 (676)
Q Consensus       170 ~~~-~~~~~~~~~ral~~~P~~~~-----lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~-y~~~e~~~~~~  242 (676)
                      ..| ...+...+++++...|..+.     ++...+.... ..|+++.|+..+++++...|.....+.. ++...+-.   
T Consensus        26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~---  101 (373)
T 1hz4_A           26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE---  101 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---
Confidence            445 46789999999998886532     2333334443 5689999999999999987754332211 11111000   


Q ss_pred             HHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhc
Q 005817          243 LKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEA  322 (676)
Q Consensus       243 ~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~  322 (676)
                                                                                 -.+..++++.|...|+++++.
T Consensus       102 -----------------------------------------------------------~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A          102 -----------------------------------------------------------ILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             -----------------------------------------------------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------------HHHHCCCHHHHHHHHHHHHHH
Confidence                                                                       001124667788888888865


Q ss_pred             CC--------CchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHhccccCCCCCCCcCcc
Q 005817          323 LP--------SSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD-----PKYWDWLARLKMTDSVSKDGTSEDIV  389 (676)
Q Consensus       323 ~p--------~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~-----~~~w~~la~~~~~~~~~~~~~~~~~~  389 (676)
                      .+        .....+..+-.++.   ..+..+.+...+++++...|..     ...+..++..+..             
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-------------  186 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLW---AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA-------------  186 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH-------------
T ss_pred             HHHhccccCcHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH-------------
Confidence            32        11112222222222   2246778999999998877753     2346667777654             


Q ss_pred             hhHHHHHHHHHHHHhhccCc--h-hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc----H
Q 005817          390 PSQMQKAIQVYEEALKNVPS--S-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT----E  462 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~--~-~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~----~  462 (676)
                      .+++++|...+++++...+.  . ..|...+........             ...|+++.|...+++++...|..    .
T Consensus       187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~A~~~~~~a~~~~~~~~~~~~  253 (373)
T 1hz4_A          187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW-------------QMTGDKAAAANWLRHTAKPEFANNHFLQ  253 (373)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH-------------HHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence            57899999999999875332  1 233322111111000             01477899999999998765532    3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------hHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      ..+...+..+...|++++|...+++++ ...+.      ...++..........|          +.+++...|++++..
T Consensus       254 ~~~~~la~~~~~~g~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          254 GQWRNIARAQILLGEFEPAEIVLEELN-ENARSLRLMSDLNRNLLLLNQLYWQAG----------RKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHT----------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhCcchhhHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHH
Confidence            456788999999999999999999988 53321      2235555555555555          367888888888765


Q ss_pred             c
Q 005817          537 V  537 (676)
Q Consensus       537 ~  537 (676)
                      .
T Consensus       323 ~  323 (373)
T 1hz4_A          323 A  323 (373)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.34  E-value=0.0012  Score=68.50  Aligned_cols=191  Identities=7%  Similarity=-0.093  Sum_probs=115.4

Q ss_pred             hhhHHHHHHHHHHHhcCCCchhHHH---HHHHHHHHhcccCcHHHHHHHHHHHHhcCC--------CChhhHHHHHHHhc
Q 005817          307 QGLRVLQTIYSGAVEALPSSFNLRQ---RFFEIVEATNLAQSDDMHDKILSDMQRDFL--------VDPKYWDWLARLKM  375 (676)
Q Consensus       307 ~~~~~a~~iy~~Al~~~p~~~~~~~---~~~~~~~~fe~~~~~~~a~~il~~~~~~~p--------~~~~~w~~la~~~~  375 (676)
                      ++++.|...|++|+...|.....+.   .+..+...+...+....+...+++++...+        ....++..++..+.
T Consensus        67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  146 (373)
T 1hz4_A           67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW  146 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence            4567788888888875443211111   111111111122456778888888776542        22334566777765


Q ss_pred             cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHH
Q 005817          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE  452 (676)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye  452 (676)
                      .             .++++.|...|++++...+..   .....|...-.-.               ...|++++|...++
T Consensus       147 ~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~---------------~~~g~~~~A~~~l~  198 (373)
T 1hz4_A          147 A-------------WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS---------------LARGDLDNARSQLN  198 (373)
T ss_dssp             H-------------TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH---------------HHHTCHHHHHHHHH
T ss_pred             H-------------hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH---------------HHcCCHHHHHHHHH
Confidence            5             578999999999999876531   1111221111110               12577999999999


Q ss_pred             HHHHcC--CCcHHHHHH-----HHHHHHhcCCHHHHHHHHHHHhhccCCCh----HHHHHHHHHHHHHhccccCCCCChh
Q 005817          453 KAEAMG--CLTEDIAHR-----YVTLYLQLGKLDEARKLAAKLCSGKLSDS----VQLWLLRISVEIRCVTRNSFSPSKA  521 (676)
Q Consensus       453 ~al~~~--p~~~~lw~~-----~~~l~~~~~~~~~A~~l~~~al~~~~P~~----~~lW~~~i~l~~~~~~~~~~~p~~~  521 (676)
                      +++...  +..+..|..     .+.++...|++++|...+++++ ...|..    ...+...+.+....|          
T Consensus       199 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~la~~~~~~g----------  267 (373)
T 1hz4_A          199 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA-KPEFANNHFLQGQWRNIARAQILLG----------  267 (373)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-CCCCTTCGGGHHHHHHHHHHHHHTT----------
T ss_pred             HHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC-CCCCCcchhhHHHHHHHHHHHHHcC----------
Confidence            998652  222223332     3345678999999999999999 655542    334555566666655          


Q ss_pred             chHHHHHHHHHHHhh
Q 005817          522 DILSIFELLKCILTK  536 (676)
Q Consensus       522 ~~~~~~~~f~~Al~~  536 (676)
                      +.+++.+.+++++..
T Consensus       268 ~~~~A~~~l~~a~~~  282 (373)
T 1hz4_A          268 EFEPAEIVLEELNEN  282 (373)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            368888888888764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.33  E-value=6e-06  Score=71.49  Aligned_cols=97  Identities=10%  Similarity=0.024  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....|...|++++...|++..+|...+..+...| +..+...|++++...|+++..|...+.... ..|+++.|...|++
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~   97 (126)
T 3upv_A           19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI-AVKEYASALETLDA   97 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhCHHHHHHHHHH
Confidence            3678899999999999999999999999988887 588999999999999999999999999886 68899999999999


Q ss_pred             HHHhC------CCCHHHHHHHHHHH
Q 005817          218 GLRVC------PTSEELWVEYLRME  236 (676)
Q Consensus       218 al~~~------p~~~~lW~~y~~~e  236 (676)
                      +++..      |.+..++..+.+..
T Consensus        98 al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           98 ARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHhCcccCCchhHHHHHHHHHHHH
Confidence            99999      88888877766543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.33  E-value=4.2e-06  Score=72.12  Aligned_cols=119  Identities=13%  Similarity=0.001  Sum_probs=96.5

Q ss_pred             CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChh
Q 005817          361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSH  439 (676)
Q Consensus       361 p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~  439 (676)
                      |.+...|..+|..+..             .++++.|...|++++...|... .|.........                 
T Consensus         9 ~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-----------------   58 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMK-------------VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-----------------   58 (131)
T ss_dssp             HHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------------
T ss_pred             hhhhHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----------------
Confidence            3445667777777765             4789999999999999877543 44443333332                 


Q ss_pred             hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817          440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (676)
Q Consensus       440 ~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (676)
                       .++++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|...+.+....+
T Consensus        59 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           59 -LGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL-ELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHT
T ss_pred             -hhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCccchHHHHHHHHHHHHHh
Confidence             3678999999999999999999999999999999999999999999999 889999999988887776554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.33  E-value=9.7e-06  Score=68.37  Aligned_cols=112  Identities=13%  Similarity=0.023  Sum_probs=91.3

Q ss_pred             hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhh
Q 005817          364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH  442 (676)
Q Consensus       364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~  442 (676)
                      ...|..+|..+..             .++++.|...|++++...|... .|.........                  .+
T Consensus         4 ~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------~~   52 (118)
T 1elw_A            4 VNELKEKGNKALS-------------VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK------------------KG   52 (118)
T ss_dssp             HHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HT
T ss_pred             HHHHHHHHHHHHH-------------cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh------------------hc
Confidence            3456667776654             4789999999999999888643 44444433332                  46


Q ss_pred             hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817          443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (676)
Q Consensus       443 ~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (676)
                      +++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|.....+.
T Consensus        53 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           53 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL-KHEANNPQLKEGLQNME  116 (118)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHhh
Confidence            78999999999999999999999999999999999999999999999 88999998888776553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.31  E-value=4e-06  Score=72.75  Aligned_cols=118  Identities=10%  Similarity=-0.073  Sum_probs=94.6

Q ss_pred             CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChh
Q 005817          361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSH  439 (676)
Q Consensus       361 p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~  439 (676)
                      |.+...|..+|..+..             .++++.|...|+++++..|... .|.........                 
T Consensus        13 ~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-----------------   62 (133)
T 2lni_A           13 PDLALMVKNKGNECFQ-------------KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-----------------   62 (133)
T ss_dssp             SCHHHHHHHHHHHHHH-------------TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-----------------
T ss_pred             cccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-----------------
Confidence            4456677788887765             4778999999999999877543 44333222211                 


Q ss_pred             hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 005817          440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC  510 (676)
Q Consensus       440 ~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~  510 (676)
                       .++++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|.....+....
T Consensus        63 -~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           63 -LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL-DLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCGGGTHHHHHHHHHHHHH
T ss_pred             -hccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHh
Confidence             3678999999999999999999999999999999999999999999999 88999888888877666543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.30  E-value=2.3e-06  Score=88.66  Aligned_cols=132  Identities=10%  Similarity=-0.022  Sum_probs=105.9

Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch----------------hH
Q 005817          349 HDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS----------------MI  412 (676)
Q Consensus       349 a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~----------------~l  412 (676)
                      +...++..+...|+....|..+|..++.             .+++++|...|++++...|..                ..
T Consensus       132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~-------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~  198 (336)
T 1p5q_A          132 AKESWEMNSEEKLEQSTIVKERGTVYFK-------------EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS  198 (336)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred             ccchhcCCHHHHHHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence            3334445555567777888888888875             578999999999999988864                23


Q ss_pred             HHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 005817          413 FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK  492 (676)
Q Consensus       413 w~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~  492 (676)
                      |.........                  .+++++|+..|++|+..+|.++..|...+..+...|++++|+..+++++ +.
T Consensus       199 ~~nla~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l  259 (336)
T 1p5q_A          199 HLNLAMCHLK------------------LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL-QL  259 (336)
T ss_dssp             HHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HH
Confidence            3222222222                  4779999999999999999999999999999999999999999999999 89


Q ss_pred             CCChHHHHHHHHHHHHHhcc
Q 005817          493 LSDSVQLWLLRISVEIRCVT  512 (676)
Q Consensus       493 ~P~~~~lW~~~i~l~~~~~~  512 (676)
                      .|.+...|..+..+....+.
T Consensus       260 ~P~~~~a~~~l~~~~~~~~~  279 (336)
T 1p5q_A          260 YPNNKAAKTQLAVCQQRIRR  279 (336)
T ss_dssp             CSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999988887776653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=1e-05  Score=71.59  Aligned_cols=116  Identities=11%  Similarity=-0.058  Sum_probs=95.0

Q ss_pred             CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch----hHHHHHHHHHHHHhcCccccccCCC
Q 005817          360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS----MIFDLYTKFLMDMIAPKKEETRDSE  435 (676)
Q Consensus       360 ~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~----~lw~~y~~~~~~~~~~~~~d~~~~~  435 (676)
                      .|.+...|..+|..++.             .++++.|...|+++++..|..    ..|.........             
T Consensus        24 ~~~~~~~~~~~a~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-------------   77 (148)
T 2dba_A           24 GASSVEQLRKEGNELFK-------------CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-------------   77 (148)
T ss_dssp             TCCCHHHHHHHHHHHHT-------------TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------
T ss_pred             chHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-------------
Confidence            45566777888887765             578999999999999988874    234333333222             


Q ss_pred             CChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817          436 LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (676)
Q Consensus       436 ~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (676)
                           .+++++|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++..+|..+..+.
T Consensus        78 -----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           78 -----LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV-SLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             -----TTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCSSCHHHHHHHHHHH
T ss_pred             -----HccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHH
Confidence                 3678999999999999999999999999999999999999999999999 88999999988776654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.29  E-value=1.4e-05  Score=68.00  Aligned_cols=116  Identities=15%  Similarity=0.106  Sum_probs=92.6

Q ss_pred             CCC-hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCCh
Q 005817          361 LVD-PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPS  438 (676)
Q Consensus       361 p~~-~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~  438 (676)
                      |.. ...|..++..+..             .++++.|...|+++++..|... .|.........                
T Consensus         5 ~~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----------------   55 (125)
T 1na0_A            5 PGNSAEAWYNLGNAYYK-------------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----------------   55 (125)
T ss_dssp             --CHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------
T ss_pred             ccccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----------------
Confidence            444 5678888877765             4789999999999998877543 44444433332                


Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817          439 HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (676)
Q Consensus       439 ~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (676)
                        .+.++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...+.....+..
T Consensus        56 --~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           56 --QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             --TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHH
T ss_pred             --hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHH
Confidence              3678999999999999999999999999999999999999999999999 889999888877665554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.28  E-value=1.8e-05  Score=71.51  Aligned_cols=108  Identities=13%  Similarity=0.031  Sum_probs=87.6

Q ss_pred             hhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhh
Q 005817          365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY  443 (676)
Q Consensus       365 ~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~  443 (676)
                      ..|..+|..++.             .++++.|...|+++++..|... .|.........                  .++
T Consensus        14 ~~~~~~a~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~------------------~~~   62 (166)
T 1a17_A           14 EELKTQANDYFK-------------AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR------------------TEC   62 (166)
T ss_dssp             HHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH------------------TTC
T ss_pred             HHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cCC
Confidence            346666766654             4789999999999999887643 44444333332                  367


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817          444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI  504 (676)
Q Consensus       444 ~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i  504 (676)
                      ++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|..+.
T Consensus        63 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~~  122 (166)
T 1a17_A           63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV-KVKPHDKDAKMKYQ  122 (166)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCCHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999 88999988885544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.27  E-value=4.6e-05  Score=76.90  Aligned_cols=89  Identities=12%  Similarity=-0.054  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHHhhccCchh-------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH
Q 005817          391 SQMQKAIQVYEEALKNVPSSM-------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED  463 (676)
Q Consensus       391 ~~~~~A~~~ye~al~~~~~~~-------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~  463 (676)
                      +++++|+..|++|++..|...       .+.....+...                  .|++++|...|++++...|.++.
T Consensus       132 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL------------------DGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH------------------hCCHHHHHHHHHHHHHHHhcCCc
Confidence            679999999999998765321       12222222222                  47799999999999998776543


Q ss_pred             -------HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817          464 -------IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ  498 (676)
Q Consensus       464 -------lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~  498 (676)
                             .|...+..+...|++++|+..+++++ ...|....
T Consensus       194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~  234 (292)
T 1qqe_A          194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ-SEDPNFAD  234 (292)
T ss_dssp             TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG-CC------
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCCC
Confidence                   57788888999999999999999999 88887543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.27  E-value=1.7e-05  Score=68.15  Aligned_cols=97  Identities=11%  Similarity=0.011  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...+...|++++...|.+...|..++..+...| ...+...|.+++...|.++..|...+.... ..|+++.|...|+++
T Consensus        28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~  106 (131)
T 2vyi_A           28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS-SLNKHVEAVAYYKKA  106 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence            567899999999999999999999999988777 578999999999999999999999999886 688999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHH
Q 005817          219 LRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~  237 (676)
                      +...|.+..+|..++.+..
T Consensus       107 ~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A          107 LELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHH
T ss_pred             HhcCccchHHHHHHHHHHH
Confidence            9999999888887776654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.27  E-value=5.5e-05  Score=77.64  Aligned_cols=240  Identities=8%  Similarity=0.029  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchh-HHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817          347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS-QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI  424 (676)
Q Consensus       347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~-~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~  424 (676)
                      +.+...++.++..+|++..+|...+.....             .+ .++++...++.++...|.+. +|..= ......+
T Consensus        71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~-------------l~~~l~eEL~~~~~~L~~nPKny~aW~hR-~wlL~~l  136 (349)
T 3q7a_A           71 ERALELTEIIVRMNPAHYTVWQYRFSLLTS-------------LNKSLEDELRLMNEFAVQNLKSYQVWHHR-LLLLDRI  136 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCCHHHHHHHHHHHHHTTCCCHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHH-------------hhhhHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHh
Confidence            457778889999999999999888776543             23 48899999999999888765 67432 2222221


Q ss_pred             cCccccccCCCCChhhhh-hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhccCCC
Q 005817          425 APKKEETRDSELPSHVEH-YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLD--------EARKLAAKLCSGKLSD  495 (676)
Q Consensus       425 ~~~~~d~~~~~~~~~~~~-~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~--------~A~~l~~~al~~~~P~  495 (676)
                      .                + .++.++..+++++..+|.+...|..=.-++...|.++        +++..+++++ ...|.
T Consensus       137 ~----------------~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I-~~dp~  199 (349)
T 3q7a_A          137 S----------------PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML-RVDGR  199 (349)
T ss_dssp             C----------------CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-HHCTT
T ss_pred             c----------------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH-HhCCC
Confidence            0                2 3578889999999999999999987666665555555        8999999999 88999


Q ss_pred             hHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHH----------------
Q 005817          496 SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHY----------------  559 (676)
Q Consensus       496 ~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~----------------  559 (676)
                      +...|..+..+..+.+....   +...+++..+.+.++|...|.+.  +.|...-..+...+..                
T Consensus       200 N~SAW~~R~~lL~~l~~~~~---~~~~~~eELe~~~~aI~~~P~n~--SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~  274 (349)
T 3q7a_A          200 NNSAWGWRWYLRVSRPGAET---SSRSLQDELIYILKSIHLIPHNV--SAWNYLRGFLKHFSLPLVPILPAILPYTASKL  274 (349)
T ss_dssp             CHHHHHHHHHHHTTSTTCCC---CHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred             CHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCCcccccccccccccccc
Confidence            99999999877765442100   01125777888899998877654  4687533334332211                


Q ss_pred             ---HHHHHHHHHHhhhhCCC---CCCCcchHHHHHHHHHHhcCHHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 005817          560 ---FDKLVEIALISVAKDGG---GESGFSLPSAIINLVIQKDGIQQAREMYKRFL-ALPRPGLVLYQNCI  622 (676)
Q Consensus       560 ---~~~~~~~a~~~~~~~~~---~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al-~~~p~~~~l~~~~i  622 (676)
                         ...+.+.+...+....+   ...++-.....++.+...|+.++|.++|+.+. +..|-...+|...+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~  344 (349)
T 3q7a_A          275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR  344 (349)
T ss_dssp             -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence               11222222211111100   00111112123444555677788888888775 44555566776554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.24  E-value=3.5e-06  Score=72.90  Aligned_cols=87  Identities=18%  Similarity=0.100  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|...|++++...|++...|...+..+...| ...+...|++++...|+++..|...+.... ..|+++.|...|+++
T Consensus        33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~-~~g~~~~A~~~~~~a  111 (121)
T 1hxi_A           33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAW  111 (121)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            577889999999999999999999999988877 578999999999999999999999998875 678999999999999


Q ss_pred             HHhCCCCHH
Q 005817          219 LRVCPTSEE  227 (676)
Q Consensus       219 l~~~p~~~~  227 (676)
                      ++..|.+..
T Consensus       112 l~~~P~~~~  120 (121)
T 1hxi_A          112 LLSQPQYEQ  120 (121)
T ss_dssp             HC-------
T ss_pred             HHhCcCCCC
Confidence            999997643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.23  E-value=1.7e-05  Score=68.52  Aligned_cols=76  Identities=8%  Similarity=-0.064  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          161 WFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       161 W~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~  237 (676)
                      |...+..+...| ...+...|++++..+|+++..|...+.... ..|+.+.|...|+++++..|++..+|..++....
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            455555555666 578999999999999999999999999886 6889999999999999999999988877665543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.22  E-value=5.1e-05  Score=68.48  Aligned_cols=95  Identities=13%  Similarity=0.044  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....+...|++++...|.+..+|...+..+...| +..+...|++++..+|.++..|...+.... ..|+++.|...|++
T Consensus        28 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~  106 (166)
T 1a17_A           28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYET  106 (166)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhccHHHHHHHHHH
Confidence            3578899999999999999999999999988877 578999999999999999999999999886 68899999999999


Q ss_pred             HHHhCCCCHHHHHHHHH
Q 005817          218 GLRVCPTSEELWVEYLR  234 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~  234 (676)
                      ++..+|.+..+|..+..
T Consensus       107 a~~~~p~~~~~~~~~~~  123 (166)
T 1a17_A          107 VVKVKPHDKDAKMKYQE  123 (166)
T ss_dssp             HHHHSTTCHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHH
Confidence            99999999888755443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.21  E-value=1.2e-05  Score=70.43  Aligned_cols=116  Identities=9%  Similarity=-0.042  Sum_probs=92.1

Q ss_pred             cCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCC
Q 005817          359 DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELP  437 (676)
Q Consensus       359 ~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~  437 (676)
                      ..|.++..|..+|..++.             .++++.|...|++++...|... .|.........               
T Consensus         4 ~~~~~~~~~~~~g~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---------------   55 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFV-------------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK---------------   55 (137)
T ss_dssp             --CCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------------
T ss_pred             CccccHHHHHHHHHHHHH-------------hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH---------------
Confidence            456778888899988876             5789999999999999888654 55444433333               


Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-----hHHHHHHHHHH
Q 005817          438 SHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD-----SVQLWLLRISV  506 (676)
Q Consensus       438 ~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~-----~~~lW~~~i~l  506 (676)
                         .++++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|+     +..++......
T Consensus        56 ---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~~~~~l~~~  125 (137)
T 3q49_B           56 ---MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY-SLAKEQRLNFGDDIPSALRIA  125 (137)
T ss_dssp             ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCCTTHHHHHHHHH
T ss_pred             ---hcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHChhHHHHHHHHHHHHHHHH
Confidence               3678999999999999999999999999999999999999999999999 76665     45555554433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.21  E-value=1.2e-05  Score=69.62  Aligned_cols=97  Identities=18%  Similarity=0.093  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...+...|++++...|.+...|..++..+...+ .+.+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~  110 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE-AMKDYTKAMDVYQKA  110 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence            567889999999999999999999999887776 578999999999999999999999999886 688999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHH
Q 005817          219 LRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e~  237 (676)
                      +...|.+..+|..+..+..
T Consensus       111 ~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A          111 LDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHCGGGTHHHHHHHHHHH
T ss_pred             HHhCCCchHHHHHHHHHHH
Confidence            9999998888887776654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.20  E-value=7.2e-06  Score=74.83  Aligned_cols=111  Identities=13%  Similarity=0.003  Sum_probs=90.4

Q ss_pred             CChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhh
Q 005817          362 VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHV  440 (676)
Q Consensus       362 ~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~  440 (676)
                      .+...|..+|..++.             .+++++|+..|+++++..|... .|.........                  
T Consensus         9 ~~a~~~~~~g~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------   57 (164)
T 3sz7_A            9 PESDKLKSEGNAAMA-------------RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA------------------   57 (164)
T ss_dssp             HHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH------------------
T ss_pred             hhHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH------------------
Confidence            345667788877765             5789999999999999888654 44443333332                  


Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI  504 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i  504 (676)
                      .++++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|....
T Consensus        58 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           58 SGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI-EAEGNGGSDAMKRG  120 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHSSSCCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCchHHHHHHH
Confidence            3679999999999999999999999999999999999999999999999 88898877665443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.20  E-value=3.1e-05  Score=65.79  Aligned_cols=96  Identities=13%  Similarity=0.185  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...+..+|++++...|.+...|..++..+...| ...+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus        25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKA  103 (125)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence            567889999999999999999999999988877 578999999999999999999999999886 688999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHH
Q 005817          219 LRVCPTSEELWVEYLRME  236 (676)
Q Consensus       219 l~~~p~~~~lW~~y~~~e  236 (676)
                      ++..|.+..++..+....
T Consensus       104 ~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A          104 LELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHCTTCHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHH
Confidence            999999988887766543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.20  E-value=4.6e-05  Score=79.93  Aligned_cols=239  Identities=14%  Similarity=0.093  Sum_probs=148.7

Q ss_pred             HHHHHHcc-CchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          165 MEFCRQRK-NGRMKKVLAQVIRFHPK------VPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       165 ~~~~~~~~-~~~~~~~~~ral~~~P~------~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~  237 (676)
                      +.+....| +..+...|++|+...+.      ...++...+.... ..|+++.|...+++|+...+.....-...+....
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            33344445 57899999999987532      2356666677665 6789999999999999887753221111111111


Q ss_pred             HHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHH
Q 005817          238 TYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYS  317 (676)
Q Consensus       238 ~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~  317 (676)
                      ..+.                                                            .....++++.|...|+
T Consensus       187 ~lg~------------------------------------------------------------~y~~~~~~~~A~~~~~  206 (378)
T 3q15_A          187 VIAG------------------------------------------------------------NYDDFKHYDKALPHLE  206 (378)
T ss_dssp             HHHH------------------------------------------------------------HHHHTTCHHHHHHHHH
T ss_pred             HHHH------------------------------------------------------------HHHHhCCHHHHHHHHH
Confidence            0000                                                            0001136778888888


Q ss_pred             HHHhcC---CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHh-----cCCCChhhHHHHHHHhccccCCCCCCCcCcc
Q 005817          318 GAVEAL---PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR-----DFLVDPKYWDWLARLKMTDSVSKDGTSEDIV  389 (676)
Q Consensus       318 ~Al~~~---p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~-----~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~  389 (676)
                      +|++..   ++.......+..+...+...+..+.|...+++++.     ..|....++..+|..+..             
T Consensus       207 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-------------  273 (378)
T 3q15_A          207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK-------------  273 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-------------
Confidence            888753   22222222222222222222467889999999888     777777788899988876             


Q ss_pred             hhHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~--~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~  467 (676)
                      .+++++|...|+++++..+.  ...+...+......+.... +          ...+.+|...+++. ...|...+++..
T Consensus       274 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~-~----------~~~~~~al~~~~~~-~~~~~~~~~~~~  341 (378)
T 3q15_A          274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV-D----------ERKIHDLLSYFEKK-NLHAYIEACARS  341 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC-C----------HHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC-c----------HHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence            57899999999999987553  2222222222222222111 0          13366777777762 122334567888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHh
Q 005817          468 YVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       468 ~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      .+..+...|++++|...+++++
T Consensus       342 la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          342 AAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999999999998

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.19  E-value=9.9e-06  Score=73.89  Aligned_cols=92  Identities=9%  Similarity=0.083  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...+...|++++...|.+..+|..++..+...| +..+...|++++..+|+++..|...+.... ..|+++.|...|+++
T Consensus        27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF-DMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHH
Confidence            578899999999999999999999999988887 588999999999999999999999999986 688999999999999


Q ss_pred             HHhCCCCHHHHHHH
Q 005817          219 LRVCPTSEELWVEY  232 (676)
Q Consensus       219 l~~~p~~~~lW~~y  232 (676)
                      ++..|++...|...
T Consensus       106 l~~~p~~~~~~~~~  119 (164)
T 3sz7_A          106 IEAEGNGGSDAMKR  119 (164)
T ss_dssp             HHHHSSSCCHHHHH
T ss_pred             HHhCCCchHHHHHH
Confidence            99999988766443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.17  E-value=1.5e-05  Score=69.86  Aligned_cols=97  Identities=6%  Similarity=-0.022  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...+...|++++...|.+...|..++..+...| +..+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL-EMESYDEAIANLQRA  103 (137)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence            578899999999999999999999999988877 578999999999999999999999999886 688999999999999


Q ss_pred             HHhCCC-----CHHHHHHHHHHHH
Q 005817          219 LRVCPT-----SEELWVEYLRMEL  237 (676)
Q Consensus       219 l~~~p~-----~~~lW~~y~~~e~  237 (676)
                      +...|+     +..++..+.....
T Consensus       104 ~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B          104 YSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHChhHHHHHHHHHHHHHHHHHH
Confidence            999997     6777777766544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.15  E-value=1.2e-05  Score=67.24  Aligned_cols=105  Identities=14%  Similarity=0.100  Sum_probs=87.4

Q ss_pred             CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCCh
Q 005817          360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPS  438 (676)
Q Consensus       360 ~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~  438 (676)
                      .|++...|..+|..+..             .+++++|...|+++++..|... .|.........                
T Consensus         2 ~p~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----------------   52 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYD-------------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----------------   52 (112)
T ss_dssp             CCSSTTGGGGHHHHHHS-------------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----------------
T ss_pred             CCCcHHHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----------------
Confidence            57788888888888765             4789999999999999887643 45444433332                


Q ss_pred             hhhhhHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhccCCCh
Q 005817          439 HVEHYISHLLTVYEKAEAMGCL--TEDIAHRYVTLYLQL-GKLDEARKLAAKLCSGKLSDS  496 (676)
Q Consensus       439 ~~~~~~~~a~~iye~al~~~p~--~~~lw~~~~~l~~~~-~~~~~A~~l~~~al~~~~P~~  496 (676)
                        .++++.|...|++++..+|.  +...|...+..+... |++++|...+.+++ ...|.+
T Consensus        53 --~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~-~~~p~~  110 (112)
T 2kck_A           53 --LERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK-LEHHHH  110 (112)
T ss_dssp             --TTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG-GGCCCC
T ss_pred             --ccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh-hcccCC
Confidence              36789999999999999999  999999999999999 99999999999999 777764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.13  E-value=0.00061  Score=71.17  Aligned_cols=155  Identities=8%  Similarity=-0.075  Sum_probs=109.4

Q ss_pred             cHHHHHHHHHHHHhcCC---C---ChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---h--HH
Q 005817          345 SDDMHDKILSDMQRDFL---V---DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---M--IF  413 (676)
Q Consensus       345 ~~~~a~~il~~~~~~~p---~---~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~--lw  413 (676)
                      ..+.+...+++++...+   +   ...++..+|..+..             .++++.|...|++|++..+..   .  ..
T Consensus       116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH-------------MKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH-------------cCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            56677777777766532   2   23456677777754             578899999999999764321   1  22


Q ss_pred             HHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC---C---cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005817          414 DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC---L---TEDIAHRYVTLYLQLGKLDEARKLAAK  487 (676)
Q Consensus       414 ~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p---~---~~~lw~~~~~l~~~~~~~~~A~~l~~~  487 (676)
                      ..+...-.-.               ...|.+++|...|++|+...+   .   ....+...+..+...|++++|...+++
T Consensus       183 ~~~~~lg~~y---------------~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  247 (378)
T 3q15_A          183 QSLFVIAGNY---------------DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK  247 (378)
T ss_dssp             HHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHH---------------HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            2221111111               124778999999999997521   1   245678889999999999999999999


Q ss_pred             Hhhc-----cCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          488 LCSG-----KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       488 al~~-----~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      ++ .     ..|.....+...+......|          +.+++.+.|++|+...+
T Consensus       248 al-~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          248 AA-KVSREKVPDLLPKVLFGLSWTLCKAG----------QTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HH-HHHHHHCGGGHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCC
T ss_pred             HH-HHHHhhCChhHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHH
Confidence            99 7     67777788888888777766          47999999999998653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.12  E-value=1.3e-05  Score=79.74  Aligned_cols=126  Identities=10%  Similarity=-0.169  Sum_probs=93.6

Q ss_pred             cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHHHHHHH
Q 005817          345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLM  421 (676)
Q Consensus       345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y~~~~~  421 (676)
                      .++.+..+++.+....|++. ..+.++..++.             .++++.|+..|+.+++..+..   ..+ .|+....
T Consensus       117 ~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~-------------~~r~~dA~~~l~~a~~~~d~~~~~~a~-~~LG~al  181 (282)
T 4f3v_A          117 NYADAMEALEAAPVAGSEHL-VAWMKAVVYGA-------------AERWTDVIDQVKSAGKWPDKFLAGAAG-VAHGVAA  181 (282)
T ss_dssp             CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH-------------TTCHHHHHHHHTTGGGCSCHHHHHHHH-HHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH-------------cCCHHHHHHHHHHhhccCCcccHHHHH-HHHHHHH
Confidence            56778888888777777777 66667766665             578999999998776543221   111 2222222


Q ss_pred             HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC--CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817          422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG--CL-TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ  498 (676)
Q Consensus       422 ~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~--p~-~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~  498 (676)
                      .                 ..|..+.|...|++++...  |. .++.++..+..+.+.|+.++|+.++++++ ...|. ..
T Consensus       182 ~-----------------~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~-a~~P~-~~  242 (282)
T 4f3v_A          182 A-----------------NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ-TTHPE-PK  242 (282)
T ss_dssp             H-----------------HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSCC-HH
T ss_pred             H-----------------HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCc-HH
Confidence            2                 1477899999999998653  55 67899999999999999999999999999 88999 88


Q ss_pred             HHHHHH
Q 005817          499 LWLLRI  504 (676)
Q Consensus       499 lW~~~i  504 (676)
                      .|....
T Consensus       243 ~~~aL~  248 (282)
T 4f3v_A          243 VAAALK  248 (282)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887754

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=2.1e-05  Score=69.52  Aligned_cols=96  Identities=8%  Similarity=-0.093  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGD---IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM  215 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~---~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~  215 (676)
                      ...+...|++++...|++   ..+|..++..+...+ +..+...|++++..+|.++..|...+.... ..|+++.|...|
T Consensus        44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~  122 (148)
T 2dba_A           44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE-KLGRLDQAVLDL  122 (148)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence            577899999999999987   889999998887777 578999999999999999999999999886 678999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHH
Q 005817          216 QNGLRVCPTSEELWVEYLRME  236 (676)
Q Consensus       216 ~ral~~~p~~~~lW~~y~~~e  236 (676)
                      ++++...|++..+|..+.++.
T Consensus       123 ~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          123 QRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999888777653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.12  E-value=2e-05  Score=70.84  Aligned_cols=90  Identities=9%  Similarity=-0.046  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-C----------chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-N----------GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN-  205 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~----------~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~-  205 (676)
                      .....+...|++++...|.+.+.|..+...+...+ .          +.+...|++||.+.|+.+..|...+....... 
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~   95 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   95 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence            45678899999999999999999999999776654 2          48999999999999999999999988775332 


Q ss_pred             ---------CCHHHHHHHHHHHHHhCCCCHH
Q 005817          206 ---------LNVTAARALMQNGLRVCPTSEE  227 (676)
Q Consensus       206 ---------~~~~~Ar~~~~ral~~~p~~~~  227 (676)
                               |+++.|...|++|+..+|++..
T Consensus        96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             cCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence                     4899999999999999999853

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.05  E-value=6.8e-05  Score=71.12  Aligned_cols=120  Identities=13%  Similarity=-0.026  Sum_probs=97.1

Q ss_pred             hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~  469 (676)
                      .+++++|...|++++.  |....|.........                  .|++++|...|++++..+|.++..|...+
T Consensus        19 ~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~lg   78 (213)
T 1hh8_A           19 KKDWKGALDAFSAVQD--PHSRICFNIGCMYTI------------------LKNMTEAEKAFTRSINRDKHLAVAYFQRG   78 (213)
T ss_dssp             TTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHcC--CChHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            4789999999999973  233344333332222                  47799999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCChH----------------HHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHH
Q 005817          470 TLYLQLGKLDEARKLAAKLCSGKLSDSV----------------QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI  533 (676)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~----------------~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~A  533 (676)
                      ..+...|++++|...+++++ ...|.+.                ..|...+......|          +.+++.+.|+++
T Consensus        79 ~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~a  147 (213)
T 1hh8_A           79 MLYYQTEKYDLAIKDLKEAL-IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE----------EWKKAEEQLALA  147 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH-HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT----------CHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHH-HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc----------CHHHHHHHHHHH
Confidence            99999999999999999999 7677654                88888888887766          479999999999


Q ss_pred             HhhcChh
Q 005817          534 LTKVSAL  540 (676)
Q Consensus       534 l~~~~~~  540 (676)
                      +...|..
T Consensus       148 l~~~p~~  154 (213)
T 1hh8_A          148 TSMKSEP  154 (213)
T ss_dssp             HTTCCSG
T ss_pred             HHcCccc
Confidence            9877654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.04  E-value=7.8e-05  Score=76.95  Aligned_cols=105  Identities=10%  Similarity=0.024  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGD---------------IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD  203 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~---------------~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~  203 (676)
                      ...|...|++|+...|.+               ..+|..++..+.+.| +..+...|++++...|+++..|...+.... 
T Consensus       163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-  241 (336)
T 1p5q_A          163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-  241 (336)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-
Confidence            678899999999999999               699999999988887 589999999999999999999999999886 


Q ss_pred             hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 005817          204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKA  245 (676)
Q Consensus       204 ~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~  245 (676)
                      ..|+++.|+..|+++++..|++..+|..+..+.........+
T Consensus       242 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          242 AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999888877665444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.04  E-value=7.7e-05  Score=64.33  Aligned_cols=96  Identities=10%  Similarity=0.077  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR  212 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar  212 (676)
                      ...+...|++++..+|++.   ..|...+......| +..+...|++++..+|++   +..+...+.... ..|+++.|.
T Consensus        18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~-~~g~~~~A~   96 (129)
T 2xev_A           18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY-GEGKNTEAQ   96 (129)
T ss_dssp             HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HcCCHHHHH
Confidence            5778999999999999998   78988888887777 588999999999999999   888999998886 688999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q 005817          213 ALMQNGLRVCPTSEELWVEYLRME  236 (676)
Q Consensus       213 ~~~~ral~~~p~~~~lW~~y~~~e  236 (676)
                      ..|++++...|+++.++....++.
T Consensus        97 ~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           97 QTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHH
Confidence            999999999999887766655554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.03  E-value=7.7e-05  Score=64.32  Aligned_cols=100  Identities=9%  Similarity=-0.002  Sum_probs=80.4

Q ss_pred             hhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc---H
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT---E  462 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~---~  462 (676)
                      .+++++|...|+++++..|+..    .|.........                  .|+++.|...|++++..+|.+   +
T Consensus        15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~------------------~~~~~~A~~~~~~~~~~~p~~~~~~   76 (129)
T 2xev_A           15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA------------------TRNFQLAEAQFRDLVSRYPTHDKAA   76 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred             hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH------------------hccHHHHHHHHHHHHHHCCCCcccH
Confidence            4789999999999999887644    23222222221                  477999999999999999998   8


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (676)
                      ..+...+..+...|++++|...+++++ ..+|++...+.....+..
T Consensus        77 ~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           77 GGLLKLGLSQYGEGKNTEAQQTLQQVA-TQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCChHHHHHHHHHHH
Confidence            889999999999999999999999999 889998877766554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.01  E-value=0.00026  Score=78.45  Aligned_cols=169  Identities=11%  Similarity=-0.019  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL--  206 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~--  206 (676)
                      ..+|...|++++...|.+..+|..-.......+           ...+...+++++..+|.++.+|..-+-.. ...+  
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l-~~l~~~  123 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL-SRLPEP  123 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcccc
Confidence            367899999999999999999987777765543           35678999999999999999999876655 5677  


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCC
Q 005817          207 NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVEN  286 (676)
Q Consensus       207 ~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (676)
                      +++.|...+++++..+|.+..+|..-.-.....           +                                   
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-----------~-----------------------------------  157 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAAQA-----------A-----------------------------------  157 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------C-----------------------------------
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-----------C-----------------------------------
Confidence            679999999999999999999997654322110           0                                   


Q ss_pred             CCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc-c----------cCcHHHHHHHHHH
Q 005817          287 TDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN-L----------AQSDDMHDKILSD  355 (676)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe-~----------~~~~~~a~~il~~  355 (676)
                                          ...+.+...++++++..|.+...|.....++.... .          ....+.+...+++
T Consensus       158 --------------------~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~  217 (567)
T 1dce_A          158 --------------------VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN  217 (567)
T ss_dssp             --------------------CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred             --------------------CChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHH
Confidence                                02345678889999999999888877665555431 1          0124567778899


Q ss_pred             HHhcCCCChhhHHHHHHHhc
Q 005817          356 MQRDFLVDPKYWDWLARLKM  375 (676)
Q Consensus       356 ~~~~~p~~~~~w~~la~~~~  375 (676)
                      ++...|++..+|..+.-..-
T Consensus       218 ai~~~P~~~saW~y~~~ll~  237 (567)
T 1dce_A          218 AFFTDPNDQSAWFYHRWLLG  237 (567)
T ss_dssp             HHHHCSSCSHHHHHHHHHHS
T ss_pred             HHhhCCCCccHHHHHHHHHh
Confidence            99999999999998876653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.99  E-value=1.2e-05  Score=68.83  Aligned_cols=89  Identities=19%  Similarity=0.098  Sum_probs=77.1

Q ss_pred             hhhHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCC
Q 005817          441 EHYISHLLTVYEKAEAM---GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFS  517 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~---~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~  517 (676)
                      .|.+++|...|++++..   +|.++..|...+..+...|++++|...+++++ +..|+++.+|..++......|      
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g------   75 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQFPNHQALRVFYAMVLYNLG------   75 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHT------
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHcC------
Confidence            36678899999999998   57788899999999999999999999999999 899999999999998888776      


Q ss_pred             CChhchHHHHHHHHHHHhhcChh
Q 005817          518 PSKADILSIFELLKCILTKVSAL  540 (676)
Q Consensus       518 p~~~~~~~~~~~f~~Al~~~~~~  540 (676)
                          +.+++.+.|++++...|..
T Consensus        76 ----~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           76 ----RYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCC
T ss_pred             ----CHHHHHHHHHHHHHhCCCc
Confidence                4799999999999877654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.98  E-value=1.1e-05  Score=68.98  Aligned_cols=89  Identities=15%  Similarity=0.115  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 005817          140 VARILEIYRLAVMR---FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM  215 (676)
Q Consensus       140 ~~~~~~iyeral~~---~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~  215 (676)
                      ...+...|++++..   .|.+...|...+..+...| +..+...|++++..+|+++.+|..++.... ..|+++.|...|
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~   84 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY-NLGRYEQGVELL   84 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HcCCHHHHHHHH
Confidence            34567899999998   6988999999999988887 589999999999999999999999999886 678999999999


Q ss_pred             HHHHHhCCCCHHHH
Q 005817          216 QNGLRVCPTSEELW  229 (676)
Q Consensus       216 ~ral~~~p~~~~lW  229 (676)
                      ++++...|+++.+.
T Consensus        85 ~~al~~~p~~~~~~   98 (117)
T 3k9i_A           85 LKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHCCCHHHH
T ss_pred             HHHHHhCCCcHHHH
Confidence            99999999987654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.97  E-value=0.00038  Score=73.33  Aligned_cols=237  Identities=11%  Similarity=0.040  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ...+|...+++.     +...+|...++...+.+ ...|...|.++     .++..|...+.-. +..|+++.|+.+++.
T Consensus        18 ~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~a-e~~g~~EeAi~yl~~   86 (449)
T 1b89_A           18 NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA-NTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHH-HhCCCHHHHHHHHHH
Confidence            367777888777     23469988888877766 56777888764     3556676666655 467788888888888


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      +.+..|+ +.+..+++......+                                                         
T Consensus        87 ark~~~~-~~i~~~Li~~Y~Klg---------------------------------------------------------  108 (449)
T 1b89_A           87 ARKKARE-SYVETELIFALAKTN---------------------------------------------------------  108 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhCcc-chhHHHHHHHHHHhC---------------------------------------------------------
Confidence            8876544 344444333222110                                                         


Q ss_pred             hhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccc
Q 005817          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD  377 (676)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~  377 (676)
                                ++..+..+|+     .|+. ..|..+-+   .|-..+.++.|...|.++        ..|..+|..+.. 
T Consensus       109 ----------~l~e~e~f~~-----~pn~-~a~~~IGd---~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~-  160 (449)
T 1b89_A          109 ----------RLAELEEFIN-----GPNN-AHIQQVGD---RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH-  160 (449)
T ss_dssp             ----------CHHHHTTTTT-----CC--------------------CTTTHHHHHHHT--------TCHHHHHHHHHT-
T ss_pred             ----------CHHHHHHHHc-----CCcH-HHHHHHHH---HHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHH-
Confidence                      1111111111     1211 12222211   222123455666666654        356677776654 


Q ss_pred             cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc
Q 005817          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM  457 (676)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~  457 (676)
                                  .++++.|.+.|+++    .....|...+..+..                  .|..+.|...... +. 
T Consensus       161 ------------Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~------------------~~ef~lA~~~~l~-L~-  204 (449)
T 1b89_A          161 ------------LGEYQAAVDGARKA----NSTRTWKEVCFACVD------------------GKEFRLAQMCGLH-IV-  204 (449)
T ss_dssp             ------------TTCHHHHHHHHHHH----TCHHHHHHHHHHHHH------------------TTCHHHHHHTTTT-TT-
T ss_pred             ------------hccHHHHHHHHHHc----CCchhHHHHHHHHHH------------------cCcHHHHHHHHHH-HH-
Confidence                        57899999999999    244578777666665                  2446666444332 22 


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817          458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (676)
Q Consensus       458 ~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (676)
                        ..|+-....+.++.+.|.+++|..+++.++ +.-|....+|....-++.+..
T Consensus       205 --~~ad~l~~lv~~Yek~G~~eEai~lLe~aL-~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          205 --VHADELEELINYYQDRGYFEELITMLEAAL-GLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTCCHHHHHHHHHHHHTTC
T ss_pred             --hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHhcC
Confidence              344545568888999999999999999999 777889999999988887764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.96  E-value=6.5e-05  Score=74.58  Aligned_cols=196  Identities=9%  Similarity=-0.111  Sum_probs=130.2

Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhccCCC------h------------
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRY-------VTLYLQLGKLDEARKLAAKLCSGKLSD------S------------  496 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~-------~~l~~~~~~~~~A~~l~~~al~~~~P~------~------------  496 (676)
                      ++...|+..|.+++..+|..++.|+..       ...+...+...++...+.+++ +..|.      +            
T Consensus        20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l-~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV-QISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT-TCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh-cCChhhhhhhhccCCccccccccc
Confidence            568899999999999999999999999       688887777788888888888 64442      1            


Q ss_pred             ---HHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhh
Q 005817          497 ---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK-HYFDKLVEIALISVA  572 (676)
Q Consensus       497 ---~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~-~~~~~~~~~a~~~~~  572 (676)
                         .+++..|+.++...+.          .+++.++|...+..-|.. . ..|...+-++...+ +.+...|+.+.....
T Consensus        99 ~~r~dl~LayA~~L~~~g~----------y~eA~~~l~~~~~~~p~~-~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d  166 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGN----------YADAMEALEAAPVAGSEH-L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD  166 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTC----------HHHHHHHHTSSCCTTCHH-H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred             CCHhHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCch-H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence               5788889998888764          788888888776655533 2 44554332332222 233333332211000


Q ss_pred             hCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHh
Q 005817          573 KDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALP--RP-GLVLYQNCIELENNLASVGDKDSLVNARKLFESALA  649 (676)
Q Consensus       573 ~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~--p~-~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~  649 (676)
                      +..    .....-.....+..+|.+++|...|++++..+  |. ....+......-..+|      ..+.|+.+|++++.
T Consensus       167 ~~~----~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG------r~deA~~~l~~a~a  236 (282)
T 4f3v_A          167 KFL----AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG------NESAAVALLEWLQT  236 (282)
T ss_dssp             HHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred             ccc----HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC------CHHHHHHHHHHHHh
Confidence            000    01122122345778999999999999998655  33 3334444444444566      78999999999999


Q ss_pred             hCCCCchHHHHH
Q 005817          650 TYDQNTSLWRDY  661 (676)
Q Consensus       650 ~~~~~~~lW~~y  661 (676)
                      ..|. +.+|...
T Consensus       237 ~~P~-~~~~~aL  247 (282)
T 4f3v_A          237 THPE-PKVAAAL  247 (282)
T ss_dssp             HSCC-HHHHHHH
T ss_pred             cCCc-HHHHHHH
Confidence            9998 7776543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.95  E-value=9.3e-05  Score=69.63  Aligned_cols=99  Identities=8%  Similarity=0.013  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDI----------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF  202 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~----------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~  202 (676)
                      ...|...|++++...|.+.                .+|..++..+...| +..+...|++++...|.++..|...+....
T Consensus        54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  133 (198)
T 2fbn_A           54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM  133 (198)
T ss_dssp             HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            5778999999999999987                89999998888877 588999999999999999999999999886


Q ss_pred             HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005817          203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTY  239 (676)
Q Consensus       203 ~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~  239 (676)
                       ..|+++.|...|++++...|++..+|..+..+....
T Consensus       134 -~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A          134 -YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             -HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             -HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence             678999999999999999999999998888776554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.94  E-value=5.7e-05  Score=62.86  Aligned_cols=85  Identities=9%  Similarity=-0.011  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhC-CCHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPK--VPGVWIYAAAWEFDHN-LNVTAARALM  215 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~--~~~lW~~~a~~e~~~~-~~~~~Ar~~~  215 (676)
                      ...+...|++++...|.+...|..++......| .+.+...|++++...|.  ++.+|...+.... .. |+++.|...|
T Consensus        22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~  100 (112)
T 2kck_A           22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR-YIEGKEVEAEIAE  100 (112)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT-TCSSCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH-HHhCCHHHHHHHH
Confidence            577899999999999999999999999988877 57899999999999999  9999999999986 78 8999999999


Q ss_pred             HHHHHhCCCC
Q 005817          216 QNGLRVCPTS  225 (676)
Q Consensus       216 ~ral~~~p~~  225 (676)
                      .+++...|.+
T Consensus       101 ~~~~~~~p~~  110 (112)
T 2kck_A          101 ARAKLEHHHH  110 (112)
T ss_dssp             HHHGGGCCCC
T ss_pred             HHHhhcccCC
Confidence            9999999975

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.92  E-value=2.4e-05  Score=84.55  Aligned_cols=131  Identities=9%  Similarity=0.024  Sum_probs=97.4

Q ss_pred             HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-------------HHHHHHH
Q 005817          352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-------------IFDLYTK  418 (676)
Q Consensus       352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-------------lw~~y~~  418 (676)
                      .++......|+....|..++..++.             .++++.|...|++|++..|...             ....|..
T Consensus       256 ~~~~~~~~~~~~a~~~~~~G~~~~~-------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n  322 (457)
T 1kt0_A          256 SWEMDTKEKLEQAAIVKEKGTVYFK-------------GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN  322 (457)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence            3344444556666778888888765             5789999999999999877641             0112222


Q ss_pred             HHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817          419 FLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ  498 (676)
Q Consensus       419 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~  498 (676)
                      .-.-..               ..++++.|+..|++|+..+|.++..|...+..+...|++++|+..+++++ +..|++..
T Consensus       323 la~~~~---------------~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al-~l~P~~~~  386 (457)
T 1kt0_A          323 LAMCYL---------------KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL-EVNPQNKA  386 (457)
T ss_dssp             HHHHHH---------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTC----C
T ss_pred             HHHHHH---------------HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHH
Confidence            211111               24779999999999999999999999999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHhc
Q 005817          499 LWLLRISVEIRCV  511 (676)
Q Consensus       499 lW~~~i~l~~~~~  511 (676)
                      .|..+..+....+
T Consensus       387 a~~~l~~~~~~~~  399 (457)
T 1kt0_A          387 ARLQISMCQKKAK  399 (457)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9988887776654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.90  E-value=7.1e-05  Score=67.88  Aligned_cols=97  Identities=13%  Similarity=0.094  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMR------------------FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAA  199 (676)
Q Consensus       139 ~~~~~~~iyeral~~------------------~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~  199 (676)
                      ....|...|++|+..                  .|.+..+|...+..+.+.| +..+...+++++...|+++..|...+.
T Consensus        26 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  105 (162)
T 3rkv_A           26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAK  105 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            357889999999998                  6777789999888888877 588999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 005817          200 WEFDHNLNVTAARALMQNGLRVCPTSE-ELWVEYLRME  236 (676)
Q Consensus       200 ~e~~~~~~~~~Ar~~~~ral~~~p~~~-~lW~~y~~~e  236 (676)
                      ... ..|+++.|...|++++...|+++ .++..+..+.
T Consensus       106 ~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A          106 ARI-AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHH-HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHH-HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            886 68899999999999999999987 5565555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.89  E-value=1.5e-05  Score=82.52  Aligned_cols=137  Identities=13%  Similarity=0.032  Sum_probs=75.7

Q ss_pred             hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHH---------------HHHHHHHHHHhcCcc
Q 005817          364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIF---------------DLYTKFLMDMIAPKK  428 (676)
Q Consensus       364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw---------------~~y~~~~~~~~~~~~  428 (676)
                      ...|..++..++.             .++++.|...|++|+...|....+               ..|...-.-..    
T Consensus       179 a~~~~~~g~~~~~-------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~----  241 (338)
T 2if4_A          179 ADRRKMDGNSLFK-------------EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI----  241 (338)
T ss_dssp             HHHHHHHHHHTCS-------------SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH----
Confidence            3446666766654             467899999999999987764311               01211111111    


Q ss_pred             ccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817          429 EETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (676)
Q Consensus       429 ~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (676)
                                 ..+.++.|+..|++++..+|.++..|...+..+...|++++|+..+++++ ...|++..+|..+..+..
T Consensus       242 -----------~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al-~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          242 -----------KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ-KYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             -----------TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT-C-----------------
T ss_pred             -----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHH
Confidence                       14678999999999999999999999999999999999999999999999 899999888887766544


Q ss_pred             HhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          509 RCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       509 ~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      ....         ..++.++.|.+++...|
T Consensus       310 ~~~~---------~~~~a~~~~~~~l~~~p  330 (338)
T 2if4_A          310 QEKA---------LYQKQKEMYKGIFKGKD  330 (338)
T ss_dssp             ------------------------------
T ss_pred             HHHH---------HHHHHHHHHHHhhCCCC
Confidence            3221         24566677888876554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.88  E-value=7.5e-05  Score=64.04  Aligned_cols=112  Identities=14%  Similarity=0.085  Sum_probs=85.9

Q ss_pred             hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhh
Q 005817          364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH  442 (676)
Q Consensus       364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~  442 (676)
                      +..|..+|..+..             .++++.|...|+++++..|... .|.........                  .+
T Consensus         4 ~~~~~~l~~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~------------------~~   52 (131)
T 1elr_A            4 ALKEKELGNDAYK-------------KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE------------------KG   52 (131)
T ss_dssp             HHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HT
T ss_pred             HHHHHHHHHHHHH-------------hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH------------------hc
Confidence            4567777777765             4789999999999999877543 44333333322                  46


Q ss_pred             hHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817          443 YISHLLTVYEKAEAMGCLT-------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (676)
Q Consensus       443 ~~~~a~~iye~al~~~p~~-------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (676)
                      +++.|...|++++...|.+       +.+|...+..+...|++++|...+++++ ...| +...+.....+..
T Consensus        53 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           53 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL-AEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCC-CHHHHHHHHHHHH
Confidence            7899999999999987765       8899999999999999999999999999 7777 5666666554443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.88  E-value=4.4e-05  Score=64.76  Aligned_cols=81  Identities=15%  Similarity=0.162  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005817          143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV  221 (676)
Q Consensus       143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~  221 (676)
                      +...|++++...|.+...|..++..+...| +..+...|++++...|.++..|...+.... ..|+.+.|+..|++++..
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence            567899999999999999999999988877 578999999999999999999999999886 678999999999999999


Q ss_pred             CCC
Q 005817          222 CPT  224 (676)
Q Consensus       222 ~p~  224 (676)
                      .|.
T Consensus        83 ~~~   85 (115)
T 2kat_A           83 AQS   85 (115)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            884

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=97.88  E-value=0.00039  Score=64.26  Aligned_cols=140  Identities=12%  Similarity=0.122  Sum_probs=98.5

Q ss_pred             HHHHHhhHHhHHHhhC---CCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHH-HH
Q 005817           72 SEIVKQRRKFEYRLKR---PSPL-KQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARIL-EI  146 (676)
Q Consensus        72 ~~i~~~R~~fE~~l~~---~~~~-~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i  146 (676)
                      .++...|..||..|..   .... +..|++||+|=....              |..            ......... .+
T Consensus         6 ~~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~y--------------P~g------------~~~~~s~L~~~l   59 (202)
T 3esl_A            6 SQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSY--------------IEV------------DSESGQEVLRST   59 (202)
T ss_dssp             HHHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH--------------HHH------------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhC--------------CCC------------CCcchhchHHHH
Confidence            6678899999999998   3333 577999999854321              100            000122344 79


Q ss_pred             HHHHHHhCCCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 005817          147 YRLAVMRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALM  215 (676)
Q Consensus       147 yeral~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~~--P~~~~lW~~~a~~e~~~~~~~~~Ar~~~  215 (676)
                      ++||++.|-++         +++|+.|++++..........+|.-+....  -....+|..+|.+. +..|++..|..+|
T Consensus        60 LErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy  138 (202)
T 3esl_A           60 MERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLL-ENAQFFLEAKVLL  138 (202)
T ss_dssp             HHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred             HHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence            99999877654         479999999962111235678888877643  34789999999997 6889999999999


Q ss_pred             HHHHHhCCCC-HHHHHHHHHHHHH
Q 005817          216 QNGLRVCPTS-EELWVEYLRMELT  238 (676)
Q Consensus       216 ~ral~~~p~~-~~lW~~y~~~e~~  238 (676)
                      ++|++.+..- ..|-..|-.|+.+
T Consensus       139 ~~GI~~~A~P~~rL~~~~~~F~~R  162 (202)
T 3esl_A          139 ELGAENNCRPYNRLLRSLSNYEDR  162 (202)
T ss_dssp             HHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCccHHHHHHHHHHHHHH
Confidence            9999987532 3566666666654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.87  E-value=0.00015  Score=68.22  Aligned_cols=103  Identities=12%  Similarity=-0.005  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHHHhhccCchh-----------------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM-----------------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE  452 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~-----------------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye  452 (676)
                      .+++++|...|++++...|...                 .|........                  ..++++.|...|+
T Consensus        51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------------~~~~~~~A~~~~~  112 (198)
T 2fbn_A           51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN------------------KNKDYPKAIDHAS  112 (198)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH------------------HTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH------------------HhcCHHHHHHHHH
Confidence            4789999999999998766432                 2222221111                  1467999999999


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817          453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV  511 (676)
Q Consensus       453 ~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~  511 (676)
                      +++..+|.++..|...+..+...|++++|...+++++ ...|.+..+|.....+....+
T Consensus       113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A          113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA-SLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 889999999888777665543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.83  E-value=5.5e-05  Score=79.65  Aligned_cols=277  Identities=11%  Similarity=0.023  Sum_probs=104.3

Q ss_pred             hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817          308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED  387 (676)
Q Consensus       308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~  387 (676)
                      +++.|..++++.     +.+++|..+...+..-   +..+.|...+.+     .+++..|...+....            
T Consensus        18 ~ld~A~~fae~~-----~~~~vWs~La~A~l~~---g~~~eAIdsfik-----a~D~~~y~~V~~~ae------------   72 (449)
T 1b89_A           18 NLDRAYEFAERC-----NEPAVWSQLAKAQLQK---GMVKEAIDSYIK-----ADDPSSYMEVVQAAN------------   72 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CHHHHHHHHHhC-----CChHHHHHHHHHHHHc---CCHHHHHHHHHc-----CCCHHHHHHHHHHHH------------
Confidence            567788888776     2235777665544322   223444444433     234445555544332            


Q ss_pred             cchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817          388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (676)
Q Consensus       388 ~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~  467 (676)
                       ..++++.|+..|+.+.+..+...+....+....+                  .|++..+...++     .| +...|..
T Consensus        73 -~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~K------------------lg~l~e~e~f~~-----~p-n~~a~~~  127 (449)
T 1b89_A           73 -TSGNWEELVKYLQMARKKARESYVETELIFALAK------------------TNRLAELEEFIN-----GP-NNAHIQQ  127 (449)
T ss_dssp             -------------------------------------------------------CHHHHTTTTT-----CC--------
T ss_pred             -hCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH------------------hCCHHHHHHHHc-----CC-cHHHHHH
Confidence             2578888999888888764432222111111111                  133444444442     13 3346777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHH
Q 005817          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL  547 (676)
Q Consensus       468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~  547 (676)
                      -++.+...|.+++|+..|.++-         -|...+..+.+.|+          .+++.+.|.+|-       ....|.
T Consensus       128 IGd~~~~~g~yeeA~~~Y~~a~---------n~~~LA~~L~~Lg~----------yq~AVea~~KA~-------~~~~Wk  181 (449)
T 1b89_A          128 VGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGE----------YQAAVDGARKAN-------STRTWK  181 (449)
T ss_dssp             ---------CTTTHHHHHHHTT---------CHHHHHHHHHTTTC----------HHHHHHHHHHHT-------CHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHhh---------hHHHHHHHHHHhcc----------HHHHHHHHHHcC-------CchhHH
Confidence            7777777788888887777652         47777777776653          677777777761       234576


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 005817          548 MALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENN  627 (676)
Q Consensus       548 ~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~  627 (676)
                      ..+.-....++ ++.+    .. +.-...  ..++-....+.+..+.|.+++|..++++++.+.+....+|..+.-+..+
T Consensus       182 ~v~~aCv~~~e-f~lA----~~-~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          182 EVCFACVDGKE-FRLA----QM-CGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHHHHTTC-HHHH----HH-TTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCc-HHHH----HH-HHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            54433332222 2222    11 111111  0111122345666788899999999999998888888888887777666


Q ss_pred             ccCCCCccchHHHHHHHHHHHhhCC-----CCchHHHHHHHHHhhcCCcc
Q 005817          628 LASVGDKDSLVNARKLFESALATYD-----QNTSLWRDYYSTETKVSFSL  672 (676)
Q Consensus       628 ~~~~~~~~~~~~aR~lye~al~~~~-----~~~~lW~~y~~fE~~~G~~~  672 (676)
                      ..+    +.+...-++|...+...+     .+..+|..+.-+=.++|+.+
T Consensus       254 y~p----~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d  299 (449)
T 1b89_A          254 FKP----QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD  299 (449)
T ss_dssp             TCH----HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred             cCH----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence            542    256677777877777766     56788888887777777755

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.82  E-value=0.00021  Score=60.45  Aligned_cols=83  Identities=11%  Similarity=-0.073  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHH
Q 005817          446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILS  525 (676)
Q Consensus       446 ~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~  525 (676)
                      .+...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|..++......|          +.++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g----------~~~~   71 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DFDPTYSVAWKWLGKTLQGQG----------DRAG   71 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHT----------CHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHcC----------CHHH
Confidence            46788999999999999999999999999999999999999999 889999999999998888776          4789


Q ss_pred             HHHHHHHHHhhcCh
Q 005817          526 IFELLKCILTKVSA  539 (676)
Q Consensus       526 ~~~~f~~Al~~~~~  539 (676)
                      +...|++++...|.
T Consensus        72 A~~~~~~al~~~~~   85 (115)
T 2kat_A           72 ARQAWESGLAAAQS   85 (115)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999986553

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.82  E-value=0.00021  Score=61.14  Aligned_cols=97  Identities=8%  Similarity=0.037  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCCHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV-------PGVWIYAAAWEFDHNLNVTA  210 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~-------~~lW~~~a~~e~~~~~~~~~  210 (676)
                      ....+...|++++...|.+..+|..++......| +..+...|++++...|.+       +.+|...+.... ..|+++.
T Consensus        19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~   97 (131)
T 1elr_A           19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF-KEEKYKD   97 (131)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH-HhccHHH
Confidence            3578899999999999999999999999888777 578999999999999877       889999998886 6889999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          211 ARALMQNGLRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       211 Ar~~~~ral~~~p~~~~lW~~y~~~e~  237 (676)
                      |...|++++...| ++.++..+..+..
T Consensus        98 A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           98 AIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            9999999999999 5777777766543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.77  E-value=0.0015  Score=72.39  Aligned_cols=182  Identities=12%  Similarity=0.083  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI  424 (676)
Q Consensus       346 ~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~  424 (676)
                      .+.+...++.++..+|++..+|...+..........   ........++++...|+++++..|... .|..= .+....+
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~---~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR-~w~l~~l  120 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEK---SPEESAALVKAELGFLESCLRVNPKSYGTWHHR-CWLLSRL  120 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHTC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhccccc---chhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHc
Confidence            457788899999999999999998876654311000   000112238899999999999888765 66432 2222221


Q ss_pred             cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhccCCChHHHHHHH
Q 005817          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG-KLDEARKLAAKLCSGKLSDSVQLWLLR  503 (676)
Q Consensus       425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~-~~~~A~~l~~~al~~~~P~~~~lW~~~  503 (676)
                      .               ...++++.+.++++++.+|.+...|..-.-.+...| .++++++.+++++ +..|.+...|..+
T Consensus       121 ~---------------~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-~~~p~n~saW~~r  184 (567)
T 1dce_A          121 P---------------EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI-TRNFSNYSSWHYR  184 (567)
T ss_dssp             S---------------SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-TTTCCCHHHHHHH
T ss_pred             c---------------cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH-HHCCCCccHHHHH
Confidence            0               014689999999999999999999999888888888 8999999999999 8999999999999


Q ss_pred             HHHHHHhccccCCC---C-ChhchHHHHHHHHHHHhhcChhhhHHHHHHH
Q 005817          504 ISVEIRCVTRNSFS---P-SKADILSIFELLKCILTKVSALESESLWLMA  549 (676)
Q Consensus       504 i~l~~~~~~~~~~~---p-~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~  549 (676)
                      ..+...........   + ..+.++++.+.+.+|+...|...  ..|...
T Consensus       185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~--saW~y~  232 (567)
T 1dce_A          185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYH  232 (567)
T ss_dssp             HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS--HHHHHH
T ss_pred             HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc--cHHHHH
Confidence            88776642110000   0 11346888899999998887654  468743

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.77  E-value=0.00021  Score=77.06  Aligned_cols=103  Identities=6%  Similarity=0.007  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGD---------------IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD  203 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~---------------~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~  203 (676)
                      ...|...|++|+...|.+               ..+|..++..+.+.+ +..|...|++++.++|+++..|...+.... 
T Consensus       284 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~-  362 (457)
T 1kt0_A          284 YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-  362 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-
Confidence            678999999999999998               689999998888877 589999999999999999999999999886 


Q ss_pred             hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005817          204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL  243 (676)
Q Consensus       204 ~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~  243 (676)
                      ..|+++.|+..|+++++..|++..+|..+..+.....+..
T Consensus       363 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          363 LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999988888766554433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.76  E-value=5.9e-05  Score=77.94  Aligned_cols=95  Identities=12%  Similarity=0.105  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDI-----------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWE  201 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~-----------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e  201 (676)
                      ...|...|++|+...|.+.                 .+|..++..+.+.+ +..+...|++++..+|+++.+|...+...
T Consensus       195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~  274 (338)
T 2if4_A          195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAK  274 (338)
T ss_dssp             CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5778999999999999876                 48888888887777 68899999999999999999999999988


Q ss_pred             HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817          202 FDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM  235 (676)
Q Consensus       202 ~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~  235 (676)
                      . ..|+++.|+..|+++++..|++..+|..+..+
T Consensus       275 ~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          275 A-ELGQMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             H-TTTCHHHHHHHHHHTTC---------------
T ss_pred             H-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            6 78899999999999999999988877766554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.76  E-value=0.00028  Score=63.82  Aligned_cols=101  Identities=17%  Similarity=0.091  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHHHHHhhcc--------Cchh--------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNV--------PSSM--------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK  453 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~--------~~~~--------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~  453 (676)
                      .++++.|+..|++++...        |+..        ....|...-.-..               ..|.++.|...+++
T Consensus        24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------~~~~~~~A~~~~~~   88 (162)
T 3rkv_A           24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL---------------NIGDLHEAEETSSE   88 (162)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH---------------HHTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH---------------hcCcHHHHHHHHHH
Confidence            478999999999999872        2111        1112222211111               24779999999999


Q ss_pred             HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH-HHHHHHHHH
Q 005817          454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-QLWLLRISV  506 (676)
Q Consensus       454 al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~-~lW~~~i~l  506 (676)
                      ++..+|.++..|...+..+...|++++|...+++++ ...|++. .++.....+
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL-RNHPAAASVVAREMKIV  141 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCGGGHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH-hcCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 8899987 555544433

>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.76  E-value=0.00082  Score=63.18  Aligned_cols=135  Identities=12%  Similarity=0.227  Sum_probs=97.7

Q ss_pred             HHHHHHhhHHhHHHhhC---CCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHH
Q 005817           71 ISEIVKQRRKFEYRLKR---PSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIY  147 (676)
Q Consensus        71 i~~i~~~R~~fE~~l~~---~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  147 (676)
                      -..+...|..||..|..   ...-+..|++||+|=...              .|-   +        .  ........++
T Consensus        48 ~~~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~--------------yP~---g--------~--~~~s~L~~lL  100 (223)
T 4aez_C           48 VAGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDN--------------FPQ---G--------E--TKTSGLVTLL  100 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHH--------------CTT---C--------C--CTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHh--------------CcC---C--------C--cchhhHHHHH
Confidence            34567899999999986   234468899999985432              000   0        0  0112345799


Q ss_pred             HHHHHhCCCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817          148 RLAVMRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (676)
Q Consensus       148 eral~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~~--P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~  216 (676)
                      +||++.|.++         +++|+.|++++     .....+|.-+....  -....+|+.+|.+. +..|++..|..+|+
T Consensus       101 Erc~~~F~~~~rYknD~RyLklWl~Ya~~~-----~~p~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy~  174 (223)
T 4aez_C          101 ERCTREFVRNPLYKDDVRYLRIWMQYVNYI-----DEPVELFSFLAHHHIGQESSIFYEEYANYF-ESRGLFQKADEVYQ  174 (223)
T ss_dssp             HHHHHHTTTCGGGTTCHHHHHHHHHHHTTC-----SCHHHHHHHHHHTTCSTTBHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred             HHHHHHhcccccccCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHCCcchhHHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence            9999998777         47999999974     35667888777643  34689999999997 68899999999999


Q ss_pred             HHHHhCCCC-HHHHHHHHHHHHH
Q 005817          217 NGLRVCPTS-EELWVEYLRMELT  238 (676)
Q Consensus       217 ral~~~p~~-~~lW~~y~~~e~~  238 (676)
                      +|++.+..- ..|-..|-.|+.+
T Consensus       175 ~Gi~~~A~P~~rL~~~~~~F~~R  197 (223)
T 4aez_C          175 KGKRMKAKPFLRFQQKYQQFTHR  197 (223)
T ss_dssp             HHHHHTCBSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCccHHHHHHHHHHHHHH
Confidence            999988542 3566666666654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.75  E-value=0.00041  Score=65.62  Aligned_cols=116  Identities=8%  Similarity=-0.033  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817          346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI  424 (676)
Q Consensus       346 ~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~  424 (676)
                      .+.+...+++++   +.++.+|..+|..+..             .+++++|...|+++++..|... .|.........  
T Consensus        22 ~~~A~~~~~~a~---~~~~~~~~~lg~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~--   83 (213)
T 1hh8_A           22 WKGALDAFSAVQ---DPHSRICFNIGCMYTI-------------LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ--   83 (213)
T ss_dssp             HHHHHHHHHTSS---SCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHc---CCChHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH--
Confidence            344444554443   2245566666666654             3567777777777776655432 33222222221  


Q ss_pred             cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH----------------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005817          425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE----------------DIAHRYVTLYLQLGKLDEARKLAAKL  488 (676)
Q Consensus       425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~----------------~lw~~~~~l~~~~~~~~~A~~l~~~a  488 (676)
                                      .|+++.|...|++++...|.+.                ..|...+..+...|++++|...++++
T Consensus        84 ----------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           84 ----------------TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             ----------------TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----------------cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                            3556777777777777655544                89999999999999999999999999


Q ss_pred             hhccCCCh
Q 005817          489 CSGKLSDS  496 (676)
Q Consensus       489 l~~~~P~~  496 (676)
                      + ...|.+
T Consensus       148 l-~~~p~~  154 (213)
T 1hh8_A          148 T-SMKSEP  154 (213)
T ss_dssp             H-TTCCSG
T ss_pred             H-HcCccc
Confidence            9 888875

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.74  E-value=0.00024  Score=61.67  Aligned_cols=90  Identities=10%  Similarity=0.006  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhCCCHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP-------GVWIYAAAWEFDHNLNVTA  210 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~-------~lW~~~a~~e~~~~~~~~~  210 (676)
                      ....|...|++|+...|.+...|...+..+...| +..+...|++++.+.|.++       .++...+.... ..|+++.
T Consensus        23 ~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~  101 (127)
T 4gcn_A           23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ-KQNDLSL  101 (127)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-HcCCHHH
Confidence            3678999999999999999999999999888887 5899999999999988764       35555555553 6789999


Q ss_pred             HHHHHHHHHHhCCCCHHHHH
Q 005817          211 ARALMQNGLRVCPTSEELWV  230 (676)
Q Consensus       211 Ar~~~~ral~~~p~~~~lW~  230 (676)
                      |...|+++|..+|+ +++..
T Consensus       102 A~~~~~kal~~~~~-~~~~~  120 (127)
T 4gcn_A          102 AVQWFHRSLSEFRD-PELVK  120 (127)
T ss_dssp             HHHHHHHHHHHSCC-HHHHH
T ss_pred             HHHHHHHHHhhCcC-HHHHH
Confidence            99999999999996 55443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.73  E-value=0.0021  Score=64.66  Aligned_cols=190  Identities=14%  Similarity=0.034  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC--ChHHHHHHHHHHHHHhccccCCCCChhchH
Q 005817          447 LLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS--DSVQLWLLRISVEIRCVTRNSFSPSKADIL  524 (676)
Q Consensus       447 a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P--~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~  524 (676)
                      +...+++.+..++.++......+..+...|++++|+.++.+++ ...|  ++.++....+++..+.+.          .+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i-~~~~~~~~lea~~l~vqi~L~~~r----------~d  153 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI-DNDEAEGTTELLLLAIEVALLNNN----------VS  153 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TSSCSTTHHHHHHHHHHHHHHTTC----------HH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCcCcHHHHHHHHHHHHHCCC----------HH
Confidence            3455666665555556666788888899999999999999998 7776  889999999999988764          78


Q ss_pred             HHHHHHHHHHhhcCh----hhhHHHH--HHHHHHHHh--hhHHHHHHHHHHHHhhhhCCCCCCCcchHH--HHHHHHHHh
Q 005817          525 SIFELLKCILTKVSA----LESESLW--LMALKFFMN--QKHYFDKLVEIALISVAKDGGGESGFSLPS--AIINLVIQK  594 (676)
Q Consensus       525 ~~~~~f~~Al~~~~~----~~~~~lW--~~~l~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~y~~~~~~~  594 (676)
                      .+++++++..+.-|.    .++..+.  ..++.....  .....-.+|+.+..    ..     +.|..  ..+....+.
T Consensus       154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~----~~-----p~~~~~~lLln~~~~~  224 (310)
T 3mv2_B          154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ----TF-----PTWKTQLGLLNLHLQQ  224 (310)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT----TS-----CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hC-----CCcccHHHHHHHHHHc
Confidence            899999887655441    2222221  223333322  12334445555432    11     22211  223356688


Q ss_pred             cCHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005817          595 DGIQQAREMYKRFLAL----------PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST  664 (676)
Q Consensus       595 g~~~~Ar~iy~~al~~----------~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~f  664 (676)
                      |++++|..+++++++.          .|.+.......|-+-..+|      +  .+..+++++.+..|+++ +-.+|..-
T Consensus       225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg------k--~a~~l~~qL~~~~P~hp-~i~d~~~k  295 (310)
T 3mv2_B          225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG------L--DTEDLTNQLVKLDHEHA-FIKHHQEI  295 (310)
T ss_dssp             TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT------C--TTHHHHHHHHHTTCCCH-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC------h--HHHHHHHHHHHhCCCCh-HHHHHHHH
Confidence            9999999999987765          2667778888888877777      3  78899999999988764 33444444


Q ss_pred             H
Q 005817          665 E  665 (676)
Q Consensus       665 E  665 (676)
                      +
T Consensus       296 ~  296 (310)
T 3mv2_B          296 D  296 (310)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.73  E-value=0.00015  Score=62.93  Aligned_cols=88  Identities=10%  Similarity=0.052  Sum_probs=72.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH-------HHHHHHHHHHHHhccc
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-------QLWLLRISVEIRCVTR  513 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~-------~lW~~~i~l~~~~~~~  513 (676)
                      +|++++|+..|++|+..+|.++..|...+..+...|++++|+..+++++ ...|.+.       .+|..........+  
T Consensus        21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~lg~~~~~~~--   97 (127)
T 4gcn_A           21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAGNAFQKQN--   97 (127)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH-HhCcccchhhHHHHHHHHHHHHHHHHcC--
Confidence            4779999999999999999999999999999999999999999999999 7666542       34555555555544  


Q ss_pred             cCCCCChhchHHHHHHHHHHHhhcCh
Q 005817          514 NSFSPSKADILSIFELLKCILTKVSA  539 (676)
Q Consensus       514 ~~~~p~~~~~~~~~~~f~~Al~~~~~  539 (676)
                              +.+++.+.|++|+...|.
T Consensus        98 --------~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           98 --------DLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             --------CHHHHHHHHHHHHHHSCC
T ss_pred             --------CHHHHHHHHHHHHhhCcC
Confidence                    588999999999986554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.66  E-value=0.00036  Score=55.73  Aligned_cols=80  Identities=11%  Similarity=0.189  Sum_probs=69.1

Q ss_pred             CCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817          156 GDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR  234 (676)
Q Consensus       156 ~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~  234 (676)
                      .+...|...+..+...+ +..+...|++++...|.++..|...+.... ..|+++.|...|++++...|.+..+|..+..
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            35677877777777766 578999999999999999999999999886 6889999999999999999999888887766


Q ss_pred             HH
Q 005817          235 ME  236 (676)
Q Consensus       235 ~e  236 (676)
                      ..
T Consensus        86 ~~   87 (91)
T 1na3_A           86 AK   87 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=97.66  E-value=0.002  Score=57.70  Aligned_cols=129  Identities=19%  Similarity=0.276  Sum_probs=92.7

Q ss_pred             hhHHhHHHhhCCC--CChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhC
Q 005817           77 QRRKFEYRLKRPS--PLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRF  154 (676)
Q Consensus        77 ~R~~fE~~l~~~~--~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~  154 (676)
                      .|..||..|....  .-+..|++||.|=...              .|          ..    ........+++||++.|
T Consensus         2 ~r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~--------------~p----------~~----~~~s~L~~lLErc~~~f   53 (164)
T 2wvi_A            2 QKRAFEYEIRFYTGNDPLDVWDRYISWTEQN--------------YP----------QG----GKESNMSTLLERAVEAL   53 (164)
T ss_dssp             CTHHHHHHCCCCCSSCTHHHHHHHHHHHHHH--------------CC----------C--------CCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhhcCCCCChHHHHHHHHHHHHH--------------Cc----------CC----CccchHHHHHHHHHHHh
Confidence            4788999997432  2367799999985431              00          00    00112356999999998


Q ss_pred             CCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Q 005817          155 KGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP  223 (676)
Q Consensus       155 p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p  223 (676)
                      .++         +++|+.|++++     .....+|.-+...  --....+|+.+|.+. +..|++..|..+|++|++.+.
T Consensus        54 ~~~~~YknD~RyLklWl~ya~~~-----~~p~~if~~L~~~~IG~~~AlfY~~wA~~l-E~~~~~~~A~~Iy~~Gi~~~A  127 (164)
T 2wvi_A           54 QGEKRYYSDPRFLNLWLKLGRLC-----NEPLDMYSYLHNQGIGVSLAQFYISWAEEY-EARENFRKADAIFQEGIQQKA  127 (164)
T ss_dssp             TTCGGGTTCHHHHHHHHHHHHHC-----SCHHHHHHHHHHTTSSTTBHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhccCHHHHHHHHHHHHhc-----CCHHHHHHHHHHCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCC
Confidence            665         47999999986     3456778777664  334789999999997 689999999999999999885


Q ss_pred             CC-HHHHHHHHHHHHHH
Q 005817          224 TS-EELWVEYLRMELTY  239 (676)
Q Consensus       224 ~~-~~lW~~y~~~e~~~  239 (676)
                      .- ..|-..+-.|....
T Consensus       128 ~P~~~L~~~~~~F~~R~  144 (164)
T 2wvi_A          128 EPLERLQSQHRQFQARV  144 (164)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            32 46777777777664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.62  E-value=0.00035  Score=73.08  Aligned_cols=100  Identities=8%  Similarity=-0.030  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVM----------------RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF  202 (676)
Q Consensus       140 ~~~~~~iyeral~----------------~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~  202 (676)
                      ...|...|++|+.                ..|.+..+|..++..+.+.+ +..+...|++++...|.++.+|...+....
T Consensus       239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  318 (370)
T 1ihg_A          239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ  318 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            5778899999998                77778899999999888877 588999999999999999999999999886


Q ss_pred             HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 005817          203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYL  240 (676)
Q Consensus       203 ~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~  240 (676)
                       ..|+++.|...|+++++..|++..+|..+..+.....
T Consensus       319 -~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          319 -GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             -HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             -HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence             6889999999999999999999999988887765543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.62  E-value=0.00076  Score=68.36  Aligned_cols=193  Identities=9%  Similarity=-0.026  Sum_probs=118.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCC-------c----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------hHHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAMGCL-------T----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------SVQLWLLR  503 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~-------~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------~~~lW~~~  503 (676)
                      .++++.|..++++|....+.       +    .+.+..-+..+...|++++|...+.+++ ...+.      ....+...
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~l   82 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA-EAHANNRSLFHAAKAFEQA   82 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence            35666777777766653221       1    1345555677888999999999999998 65442      23455555


Q ss_pred             HHHHHHhccccCCCCChhchHHHHHHHHHHHhhcCh----hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCC
Q 005817          504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA----LESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGG  577 (676)
Q Consensus       504 i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~----~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~  577 (676)
                      +.+....+          +.+++.+.|++|+...+.    ......+......+.. +  +.+...|++|+.... ..+.
T Consensus        83 g~~~~~~g----------~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~-~~~~  150 (307)
T 2ifu_A           83 GMMLKDLQ----------RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE-NEER  150 (307)
T ss_dssp             HHHHHHTT----------CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH-HTTC
T ss_pred             HHHHHhCC----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH-hCCC
Confidence            56665555          478888999999875321    1122334333333433 3  344556666665432 2221


Q ss_pred             CC-CcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh
Q 005817          578 ES-GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDSLVNARKLFESALAT  650 (676)
Q Consensus       578 ~~-~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~------~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~  650 (676)
                      .. ........+......|++++|...|++++...|..      ...+...+.....++      +.+.|...|++++ .
T Consensus       151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g------~~~~A~~~~~~al-~  223 (307)
T 2ifu_A          151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA------DYVAAQKCVRESY-S  223 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHT-T
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHh-C
Confidence            00 01112234566778999999999999998754322      124445555555556      8999999999999 8


Q ss_pred             CCC
Q 005817          651 YDQ  653 (676)
Q Consensus       651 ~~~  653 (676)
                      .|.
T Consensus       224 ~p~  226 (307)
T 2ifu_A          224 IPG  226 (307)
T ss_dssp             STT
T ss_pred             CCC
Confidence            884

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.62  E-value=0.00025  Score=74.15  Aligned_cols=114  Identities=11%  Similarity=-0.006  Sum_probs=88.2

Q ss_pred             hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc----------------hh-HHHHHHHHHHHHhcCcc
Q 005817          366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS----------------SM-IFDLYTKFLMDMIAPKK  428 (676)
Q Consensus       366 ~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~----------------~~-lw~~y~~~~~~~~~~~~  428 (676)
                      .|..+|..++.             .++++.|...|++|++..+.                .. .|.........      
T Consensus       225 ~~~~~g~~~~~-------------~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~------  285 (370)
T 1ihg_A          225 DLKNIGNTFFK-------------SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK------  285 (370)
T ss_dssp             HHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHH-------------hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            35566666655             47899999999999983322                11 22222222221      


Q ss_pred             ccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817          429 EETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (676)
Q Consensus       429 ~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (676)
                                  .+++++|+..|++|+..+|.++..|...+..+...|++++|+..+++|+ +..|++..+|..+..+..
T Consensus       286 ------------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al-~l~P~~~~~~~~l~~~~~  352 (370)
T 1ihg_A          286 ------------MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ-EIAPEDKAIQAELLKVKQ  352 (370)
T ss_dssp             ------------TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHH
T ss_pred             ------------ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH
Confidence                        4678999999999999999999999999999999999999999999999 889999988888776665


Q ss_pred             Hhc
Q 005817          509 RCV  511 (676)
Q Consensus       509 ~~~  511 (676)
                      ..+
T Consensus       353 ~~~  355 (370)
T 1ihg_A          353 KIK  355 (370)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.61  E-value=0.00018  Score=64.56  Aligned_cols=96  Identities=10%  Similarity=-0.027  Sum_probs=79.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKL----------DEARKLAAKLCSGKLSDSVQLWLLRISVEIRC  510 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~----------~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~  510 (676)
                      .+.++.|+..|++++..+|.+++.|..|+..+...+++          ++|+..|++|+ +..|+..+.|......+...
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL-~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-LIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH-HhCcCcHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999988764          59999999999 89999999999988877765


Q ss_pred             ccccCCCCC----hhchHHHHHHHHHHHhhcChh
Q 005817          511 VTRNSFSPS----KADILSIFELLKCILTKVSAL  540 (676)
Q Consensus       511 ~~~~~~~p~----~~~~~~~~~~f~~Al~~~~~~  540 (676)
                      +.+   +|+    .++.+++.+.|++|+..-|..
T Consensus        94 g~l---~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           94 AFL---TPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHH---CCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccc---CcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            421   121    135788999999999876643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.61  E-value=0.00027  Score=63.57  Aligned_cols=89  Identities=13%  Similarity=0.018  Sum_probs=78.6

Q ss_pred             hhhHHHHHHHHHHHHHcCCC-------cHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhcc-------CCChHHHH-
Q 005817          441 EHYISHLLTVYEKAEAMGCL-------TED-----IAHRYVTLYLQLGKLDEARKLAAKLCSGK-------LSDSVQLW-  500 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~-------~~~-----lw~~~~~l~~~~~~~~~A~~l~~~al~~~-------~P~~~~lW-  500 (676)
                      .|+++.|...|++|+..+|.       +..     .|..-+..+...|++++|+..+++|+ ..       .|++...| 
T Consensus        24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL-~l~n~~~e~~pd~~~A~~  102 (159)
T 2hr2_A           24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL-HYFNRRGELNQDEGKLWI  102 (159)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHCCTTSTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhhhccccCCCchHHHHH
Confidence            47799999999999999888       433     89999999999999999999999999 88       99999999 


Q ss_pred             ---HHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh
Q 005817          501 ---LLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL  540 (676)
Q Consensus       501 ---~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~  540 (676)
                         ..+...+...+          +.+++.+.|++|+...|..
T Consensus       103 ~~~~~rG~aL~~lg----------r~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A          103 SAVYSRALALDGLG----------RGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhHHHHHHHCC----------CHHHHHHHHHHHHhcCCCc
Confidence               88888888776          4899999999999876543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.55  E-value=0.0029  Score=60.17  Aligned_cols=186  Identities=10%  Similarity=-0.005  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC----CHHHHHHHHHH
Q 005817          143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL----NVTAARALMQN  217 (676)
Q Consensus       143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~----~~~~Ar~~~~r  217 (676)
                      +...|+++...  ++...+..+..+....+ ..++...|++++..  .++..+..++.... . +    +++.|...|++
T Consensus         5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~-~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKI-R-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTT-S-STTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-c-CCCCCCHHHHHHHHHH
Confidence            45788888875  88999999998887766 57899999999875  57899999888875 3 5    89999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      ++.  +.++..+..+..+...            +...                                           
T Consensus        79 A~~--~g~~~a~~~Lg~~y~~------------g~g~-------------------------------------------  101 (212)
T 3rjv_A           79 AVE--AGSKSGEIVLARVLVN------------RQAG-------------------------------------------  101 (212)
T ss_dssp             HHH--TTCHHHHHHHHHHHTC------------GGGS-------------------------------------------
T ss_pred             HHH--CCCHHHHHHHHHHHHc------------CCCC-------------------------------------------
Confidence            976  4566666555544221            0000                                           


Q ss_pred             hhhhhhHHHhhhHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHhc-ccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 005817          298 QKSVDLFREQGLRVLQTIYSGAVEALPS--SFNLRQRFFEIVEATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK  374 (676)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~--~~~~~~~~~~~~~~fe-~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~  374 (676)
                              .++++.|...|++|++..|.  ....+..+-.++..-. ...+.+.+...++++... |.++..+..++..+
T Consensus       102 --------~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y  172 (212)
T 3rjv_A          102 --------ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF  172 (212)
T ss_dssp             --------SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred             --------ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence                    02668899999999998773  2444555544443311 123578899999999888 77788889999988


Q ss_pred             ccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc
Q 005817          375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV  407 (676)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~  407 (676)
                      ..+..-       .+..++++|...|++|++.-
T Consensus       173 ~~g~gg-------~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          173 QQGEKG-------FIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHCBTT-------TBCCCHHHHHHHHHHHHHHT
T ss_pred             HcCCCC-------CCCCCHHHHHHHHHHHHHcC
Confidence            654110       01347899999999998753

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=97.54  E-value=0.0013  Score=58.13  Aligned_cols=126  Identities=13%  Similarity=0.175  Sum_probs=90.4

Q ss_pred             HHhhHHhHHHhhCC-CCC-hHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHH
Q 005817           75 VKQRRKFEYRLKRP-SPL-KQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVM  152 (676)
Q Consensus        75 ~~~R~~fE~~l~~~-~~~-~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~  152 (676)
                      ..-|..||..|..- +.. +..|++||+|=...              .          +   .   .......+++|+++
T Consensus         7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~--------------~----------P---~---g~~~l~~lLErc~~   56 (152)
T 4a1g_A            7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEEN--------------F----------P---E---NKEYLITLLEHLMK   56 (152)
T ss_dssp             HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTT--------------C----------S---S---CTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH--------------c----------C---C---CchhHHHHHHHHHH
Confidence            34577899999973 222 57799999985321              1          1   0   01236689999999


Q ss_pred             hCCCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005817          153 RFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV  221 (676)
Q Consensus       153 ~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~  221 (676)
                      .|.++         +++|+.|++++     .....+|.-+...  --....+|+.+|.+. +..|++..|..+|++|++.
T Consensus        57 ~f~~~~~YknD~RyLklWl~ya~~~-----~dp~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy~~Gi~~  130 (152)
T 4a1g_A           57 EFLDKKKYHNDPRFISYCLKFAEYN-----SDLHQFFEFLYNHGIGTLSSPLYIAWAGHL-EAQGELQHASAVLQRGIQN  130 (152)
T ss_dssp             HHTTCGGGTTCHHHHHHHHHHHTTB-----SCHHHHHHHHHTTTTTTTBHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHT
T ss_pred             HhcccccccCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHc
Confidence            88654         47999999885     2367788877664  334689999999987 6899999999999999998


Q ss_pred             CCCC-HHHHHHHHHHH
Q 005817          222 CPTS-EELWVEYLRME  236 (676)
Q Consensus       222 ~p~~-~~lW~~y~~~e  236 (676)
                      +..- ..|-..|-.|.
T Consensus       131 ~A~P~~rL~~~~~~F~  146 (152)
T 4a1g_A          131 QAEPREFLQQQYRLFQ  146 (152)
T ss_dssp             TCBSHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHH
Confidence            7542 34555555554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.51  E-value=0.00047  Score=74.80  Aligned_cols=97  Identities=12%  Similarity=0.041  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ  216 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~  216 (676)
                      .....|...|++|+...|.+...|..++..+.+.+ ++.|...|++++..+|.++..|...+.... ..|+++.|...|+
T Consensus        20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~   98 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYE   98 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence            34678999999999999999999999999988887 588999999999999999999999999886 6789999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHH
Q 005817          217 NGLRVCPTSEELWVEYLRM  235 (676)
Q Consensus       217 ral~~~p~~~~lW~~y~~~  235 (676)
                      ++++..|++..+|..+...
T Consensus        99 ~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           99 TVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHH
Confidence            9999999998888777665

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.51  E-value=0.0025  Score=63.82  Aligned_cols=155  Identities=9%  Similarity=0.021  Sum_probs=105.8

Q ss_pred             CcHHHHHHHHHHHHhcCCCChhh-----HHH-HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-H---H
Q 005817          344 QSDDMHDKILSDMQRDFLVDPKY-----WDW-LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-I---F  413 (676)
Q Consensus       344 ~~~~~a~~il~~~~~~~p~~~~~-----w~~-la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-l---w  413 (676)
                      +..+.+...++++....|..+..     |.. ++..+..             .++++.|...|++++...+... .   .
T Consensus        89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~Ai~~~~~al~~~~~~~~~~~~~  155 (293)
T 3u3w_A           89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-------------KVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-------------SSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred             hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-------------ccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence            35778888888888877776552     222 4555433             3578999999999998543221 1   1


Q ss_pred             HHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc---C----CCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005817          414 DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM---G----CLTEDIAHRYVTLYLQLGKLDEARKLAA  486 (676)
Q Consensus       414 ~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~---~----p~~~~lw~~~~~l~~~~~~~~~A~~l~~  486 (676)
                      ..|...-.-.               ...|++++|...|++|+..   .    +....++...+..+...|++++|...++
T Consensus       156 ~~~~~lg~~y---------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~  220 (293)
T 3u3w_A          156 YIENAIANIY---------------AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN  220 (293)
T ss_dssp             HHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHH---------------HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            1122211111               1246789999999999952   1    2234578899999999999999999999


Q ss_pred             HHhhccCC------ChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          487 KLCSGKLS------DSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       487 ~al~~~~P------~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      +|+ ...+      ....+|...+......|.         +.+++.+.|++|+..
T Consensus       221 ~al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~---------~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          221 KAI-EISCRINSMALIGQLYYQRGECLRKLEY---------EEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHH-HHHHHTTBCTTHHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHcCcHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHH
Confidence            999 5433      236788888887777663         357888888888763

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.51  E-value=0.00014  Score=60.05  Aligned_cols=72  Identities=10%  Similarity=0.054  Sum_probs=63.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Q 005817          153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS  225 (676)
Q Consensus       153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~  225 (676)
                      ..|++...|..++..+...| ++.+...|++++...|+++..|...+.... ..|+++.|...|+++++..|..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhhcC
Confidence            47999999999999998887 588999999999999999999999999886 7889999999999999987753

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.50  E-value=0.00019  Score=77.84  Aligned_cols=98  Identities=13%  Similarity=0.063  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~  468 (676)
                      .+++++|...|++|++..|... .|.........                  .+++++|...|++|+..+|.++..|...
T Consensus        19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~al~l~p~~~~~~~~l   80 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR------------------TECYGYALGDATRAIELDKKYIKGYYRR   80 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH------------------hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5789999999999999888643 45444333332                  4779999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHH
Q 005817          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV  506 (676)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l  506 (676)
                      +..+...|++++|...+++++ +..|++...|..+...
T Consensus        81 g~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           81 AASNMALGKFRAALRDYETVV-KVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH-HHSTTCTTHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Confidence            999999999999999999999 8899988888776655

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.49  E-value=0.0015  Score=66.23  Aligned_cols=192  Identities=12%  Similarity=0.065  Sum_probs=118.4

Q ss_pred             hhhHHHHHHHHHHHhcCCC-------chhHHHHHHH-HHHHhcccCcHHHHHHHHHHHHhcCCCC------hhhHHHHHH
Q 005817          307 QGLRVLQTIYSGAVEALPS-------SFNLRQRFFE-IVEATNLAQSDDMHDKILSDMQRDFLVD------PKYWDWLAR  372 (676)
Q Consensus       307 ~~~~~a~~iy~~Al~~~p~-------~~~~~~~~~~-~~~~fe~~~~~~~a~~il~~~~~~~p~~------~~~w~~la~  372 (676)
                      ++++.|..++++|.+..+.       +.+-...++. ....|...+.++.+...+.+++..++..      ...+..++.
T Consensus         5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~   84 (307)
T 2ifu_A            5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM   84 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566777777777764432       1111111111 1111222235677777787777765432      234566666


Q ss_pred             HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---h-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHH
Q 005817          373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLL  448 (676)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~  448 (676)
                      .+..             .+++++|+..|++|++..+..   . .-..|...-.- +              .. +++++|.
T Consensus        85 ~~~~-------------~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~-~--------------~~-g~~~~A~  135 (307)
T 2ifu_A           85 MLKD-------------LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL-M--------------EP-LDLSKAV  135 (307)
T ss_dssp             HHHH-------------TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-H--------------TT-TCHHHHH
T ss_pred             HHHh-------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-H--------------Hc-CCHHHHH
Confidence            6644             467888999999998753221   1 11222221111 1              12 6689999


Q ss_pred             HHHHHHHHcCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh------HHHHHHHHHHHHHhccccCC
Q 005817          449 TVYEKAEAMGCLT------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIRCVTRNSF  516 (676)
Q Consensus       449 ~iye~al~~~p~~------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~~~~~~~~  516 (676)
                      ..|++|+...+..      ...+...+.++...|++++|+..+++++ ...|.+      ...|...+......+     
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~g~~~~~~g-----  209 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK-SMYKEMENYPTCYKKCIAQVLVQLHRA-----  209 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHHHHcC-----
Confidence            9999999874432      5678889999999999999999999999 655432      234555555554444     


Q ss_pred             CCChhchHHHHHHHHHHHhhcCh
Q 005817          517 SPSKADILSIFELLKCILTKVSA  539 (676)
Q Consensus       517 ~p~~~~~~~~~~~f~~Al~~~~~  539 (676)
                           +.+++...|++++ ..|.
T Consensus       210 -----~~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          210 -----DYVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             -----CHHHHHHHHHHHT-TSTT
T ss_pred             -----CHHHHHHHHHHHh-CCCC
Confidence                 4799999999999 6553

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.46  E-value=0.00067  Score=55.28  Aligned_cols=77  Identities=12%  Similarity=-0.062  Sum_probs=66.8

Q ss_pred             CCCCHHHHHHHHHHHHHc-c---CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005817          154 FKGDIELWFKYMEFCRQR-K---NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW  229 (676)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~-~---~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW  229 (676)
                      .|.+.++|..|++...-. +   ...+..+|+++|..+|+++..++..+...+ ..|++..|...+++.+...|.  ..|
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~--~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDP--NLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCT--TCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--Ccc
Confidence            689999999999998543 2   368999999999999999999999999997 688999999999999999998  445


Q ss_pred             HHHH
Q 005817          230 VEYL  233 (676)
Q Consensus       230 ~~y~  233 (676)
                      ..-+
T Consensus        79 ~~~i   82 (93)
T 3bee_A           79 RVTI   82 (93)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.43  E-value=0.0076  Score=57.16  Aligned_cols=188  Identities=12%  Similarity=0.021  Sum_probs=124.4

Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchh
Q 005817          312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS  391 (676)
Q Consensus       312 a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~  391 (676)
                      |...|+++.+.  .+...+..+-.++..   ....+.+...++++...  .++..+..++..+..++          +..
T Consensus         5 A~~~~~~aa~~--g~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g----------~~~   67 (212)
T 3rjv_A            5 PGSQYQQQAEA--GDRRAQYYLADTWVS---SGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNP----------QQA   67 (212)
T ss_dssp             TTHHHHHHHHT--TCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSST----------TSC
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC----------CCC
Confidence            56777888775  344444444444433   24577888889888764  67889999999986521          124


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC--cHHHHHHHH
Q 005817          392 QMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL--TEDIAHRYV  469 (676)
Q Consensus       392 ~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~--~~~lw~~~~  469 (676)
                      ++++|...|+++++.-...... ........    ...          ..+++++|...|++|...++.  .+..+...+
T Consensus        68 ~~~~A~~~~~~A~~~g~~~a~~-~Lg~~y~~----g~g----------~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg  132 (212)
T 3rjv_A           68 DYPQARQLAEKAVEAGSKSGEI-VLARVLVN----RQA----------GATDVAHAITLLQDAARDSESDAAVDAQMLLG  132 (212)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHH-HHHHHHTC----GGG----------SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHH-HHHHHHHc----CCC----------CccCHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence            6899999999997642221111 11111111    000          135689999999999999874  488899999


Q ss_pred             HHHHh----cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817          470 TLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (676)
Q Consensus       470 ~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~  537 (676)
                      .++..    .+++++|...+++++ .. |.++..+.....++..... ... +  .+.+++.+.|++|+..-
T Consensus       133 ~~y~~g~g~~~d~~~A~~~~~~A~-~~-~~~~~a~~~Lg~~y~~g~g-g~~-~--~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          133 LIYASGVHGPEDDVKASEYFKGSS-SL-SRTGYAEYWAGMMFQQGEK-GFI-E--PNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHH-HT-SCTTHHHHHHHHHHHHCBT-TTB-C--CCHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHH-Hc-CCCHHHHHHHHHHHHcCCC-CCC-C--CCHHHHHHHHHHHHHcC
Confidence            99988    789999999999999 55 5555556665555544210 000 0  16789999999998753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.34  E-value=0.00064  Score=61.07  Aligned_cols=96  Identities=9%  Similarity=-0.090  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcc-CchHHHHHHHHHHh-------CCCCHHHH----H
Q 005817          140 VARILEIYRLAVMRFKG-------DIE-----LWFKYMEFCRQRK-NGRMKKVLAQVIRF-------HPKVPGVW----I  195 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~-------~~~-----lW~~y~~~~~~~~-~~~~~~~~~ral~~-------~P~~~~lW----~  195 (676)
                      ...|...|++|+...|.       +..     +|......+.+.| ++.+...|++||.+       +|+++..|    .
T Consensus        27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~  106 (159)
T 2hr2_A           27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY  106 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHH
Confidence            67789999999999999       555     9998888888877 68899999999999       99999999    7


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817          196 YAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME  236 (676)
Q Consensus       196 ~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e  236 (676)
                      ..+.... ..|+++.|...|++++.+.|++..+..+..+..
T Consensus       107 ~rG~aL~-~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~  146 (159)
T 2hr2_A          107 SRALALD-GLGRGAEAMPEFKKVVEMIEERKGETPGKERMM  146 (159)
T ss_dssp             HHHHHHH-HTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred             hHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            7666664 788999999999999999998766666655543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.31  E-value=0.0013  Score=54.01  Aligned_cols=71  Identities=10%  Similarity=-0.129  Sum_probs=61.9

Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       457 ~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      .+|.++..|...+..+...|++++|+..+++++ +..|++...|..++......|          +.+++.+.|++++..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g----------~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELV-ETDPDYVGTYYHLGKLYERLD----------RTDDAIDTYAQGIEV   70 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhh
Confidence            358899999999999999999999999999999 899999999999998888776          478999999999976


Q ss_pred             cC
Q 005817          537 VS  538 (676)
Q Consensus       537 ~~  538 (676)
                      .+
T Consensus        71 ~~   72 (100)
T 3ma5_A           71 AR   72 (100)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.27  E-value=0.0058  Score=61.13  Aligned_cols=157  Identities=11%  Similarity=0.059  Sum_probs=105.2

Q ss_pred             HHhhhHHHHHHHHHHHhcCCCchhHH--HHHHHHHHHhc-ccCcHHHHHHHHHHHHhcCCCChh------hHHHHHHHhc
Q 005817          305 REQGLRVLQTIYSGAVEALPSSFNLR--QRFFEIVEATN-LAQSDDMHDKILSDMQRDFLVDPK------YWDWLARLKM  375 (676)
Q Consensus       305 ~~~~~~~a~~iy~~Al~~~p~~~~~~--~~~~~~~~~fe-~~~~~~~a~~il~~~~~~~p~~~~------~w~~la~~~~  375 (676)
                      ..++++.|..+|+++++..+...+..  ..++.....+. ..+..+.+...+++++...+....      ++..+|..+.
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            44688999999999998776654432  11222111221 223567889999999886554433      4677777775


Q ss_pred             cccCCCCCCCcCcchhHHHHHHHHHHHHhhccC---chh--HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---SSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV  450 (676)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~---~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i  450 (676)
                      .             .+++++|...|+++++...   ...  .-..|...-.-..               ..|++++|...
T Consensus       167 ~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~---------------~~~~y~~A~~~  218 (293)
T 3u3w_A          167 E-------------NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY---------------LDSRYEESLYQ  218 (293)
T ss_dssp             H-------------TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH---------------HTTCHHHHHHH
T ss_pred             H-------------cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---------------HHhHHHHHHHH
Confidence            5             5789999999999996321   211  1112222211111               24779999999


Q ss_pred             HHHHHHcCCC------cHHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 005817          451 YEKAEAMGCL------TEDIAHRYVTLYLQLG-KLDEARKLAAKLC  489 (676)
Q Consensus       451 ye~al~~~p~------~~~lw~~~~~l~~~~~-~~~~A~~l~~~al  489 (676)
                      +++|+...+.      -..++...+..+...| .+++|...+++|+
T Consensus       219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            9999976322      2678999999999999 4799999999998

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.27  E-value=0.0012  Score=52.53  Aligned_cols=68  Identities=13%  Similarity=0.041  Sum_probs=61.5

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR  509 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~  509 (676)
                      .+++++|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|..+..+...
T Consensus        22 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHh
Confidence            3678999999999999999999999999999999999999999999999 8899999888887765543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.0021  Score=53.15  Aligned_cols=68  Identities=19%  Similarity=0.074  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Q 005817          157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS  225 (676)
Q Consensus       157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~  225 (676)
                      +...|...+..+...| +..+...|++++...|.++.+|...+.... ..|+++.|...|++++...|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCc
Confidence            3567777777777766 578999999999999999999999999886 6889999999999999999987

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.15  E-value=0.026  Score=56.63  Aligned_cols=182  Identities=8%  Similarity=-0.042  Sum_probs=120.9

Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCC--CChhhHHHHHHHhccccCCCCCCCcCcc
Q 005817          312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFL--VDPKYWDWLARLKMTDSVSKDGTSEDIV  389 (676)
Q Consensus       312 a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p--~~~~~w~~la~~~~~~~~~~~~~~~~~~  389 (676)
                      |...+++.++..+.+......+..++   ...+..+.|..++.+++...|  ++.++....++.++.             
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~---~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-------------  148 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQ---AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-------------  148 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHH---HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHH---HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-------------
Confidence            56677776665433322222222222   223467899999999988887  678888899999887             


Q ss_pred             hhHHHHHHHHHHHHhhccCc-----hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC--cH
Q 005817          390 PSQMQKAIQVYEEALKNVPS-----SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL--TE  462 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~-----~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~--~~  462 (676)
                      .++.+.|+..+++..+..|.     ..+....+..+.....  +            .+.+..|..+|+++....|.  ++
T Consensus       149 ~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~--g------------~~~~q~A~~~f~El~~~~p~~~~~  214 (310)
T 3mv2_B          149 NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFAT--N------------KETATSNFYYYEELSQTFPTWKTQ  214 (310)
T ss_dssp             TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH--T------------CSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHh--C------------CccHHHHHHHHHHHHHhCCCcccH
Confidence            57899999999998776662     3333333333222211  0            12478899999999888776  23


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccC----------CChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHH
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKL----------SDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC  532 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~----------P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~  532 (676)
                      .+.+.   .++..|++++|..+++.++ +.+          |++++.....|.+....|.            .+.+++.+
T Consensus       215 ~lLln---~~~~~g~~~eAe~~L~~l~-~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk------------~a~~l~~q  278 (310)
T 3mv2_B          215 LGLLN---LHLQQRNIAEAQGIVELLL-SDYYSVEQKENAVLYKPTFLANQITLALMQGL------------DTEDLTNQ  278 (310)
T ss_dssp             HHHHH---HHHHHTCHHHHHHHHHHHH-SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC------------TTHHHHHH
T ss_pred             HHHHH---HHHHcCCHHHHHHHHHHHH-HhcccccccccCCCCCHHHHHHHHHHHHHhCh------------HHHHHHHH
Confidence            33333   6788999999999999877 653          8899988887777766552            34456677


Q ss_pred             HHhhcCh
Q 005817          533 ILTKVSA  539 (676)
Q Consensus       533 Al~~~~~  539 (676)
                      +.+.-|.
T Consensus       279 L~~~~P~  285 (310)
T 3mv2_B          279 LVKLDHE  285 (310)
T ss_dssp             HHHTTCC
T ss_pred             HHHhCCC
Confidence            7665554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.15  E-value=0.015  Score=58.07  Aligned_cols=174  Identities=10%  Similarity=0.007  Sum_probs=101.4

Q ss_pred             CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHH-----HHH-HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH
Q 005817          155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPG-----VWI-YAAAWEFDHNLNVTAARALMQNGLRVCPTSEE  227 (676)
Q Consensus       155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~-----lW~-~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~  227 (676)
                      |.....+..-+..+...| +..+...+.+++...|..+.     .|. ..+... ...|+++.|...|++++...+....
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYV-LKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH-HTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            334444444555544444 46778888888888776542     222 222333 3567888888888888877665432


Q ss_pred             HHHH---HHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhH
Q 005817          228 LWVE---YLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLF  304 (676)
Q Consensus       228 lW~~---y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (676)
                      .|..   |..+-..+                                                                .
T Consensus       151 ~~~~~~~~~~lg~~y----------------------------------------------------------------~  166 (293)
T 2qfc_A          151 VYQNLYIENAIANIY----------------------------------------------------------------A  166 (293)
T ss_dssp             TTHHHHHHHHHHHHH----------------------------------------------------------------H
T ss_pred             hHHHHHHHHHHHHHH----------------------------------------------------------------H
Confidence            2221   11110000                                                                0


Q ss_pred             HHhhhHHHHHHHHHHH---hcCCCchhHH-HHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC------hhhHHHHHHHh
Q 005817          305 REQGLRVLQTIYSGAV---EALPSSFNLR-QRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD------PKYWDWLARLK  374 (676)
Q Consensus       305 ~~~~~~~a~~iy~~Al---~~~p~~~~~~-~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~------~~~w~~la~~~  374 (676)
                      ..++++.|...|++|+   +..|++.... ..+..+...+...+.++.|...+++++...++.      ..++..+|..+
T Consensus       167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y  246 (293)
T 2qfc_A          167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL  246 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            1246788999999999   4556543222 222232222322346788888888887654321      55677888877


Q ss_pred             ccccCCCCCCCcCcchhHHHHH-HHHHHHHhhc
Q 005817          375 MTDSVSKDGTSEDIVPSQMQKA-IQVYEEALKN  406 (676)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~A-~~~ye~al~~  406 (676)
                      ..             .+++++| ...|++|+..
T Consensus       247 ~~-------------~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          247 RK-------------LEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HH-------------TTCCHHHHHHHHHHHHHH
T ss_pred             HH-------------cCCcHHHHHHHHHHHHHH
Confidence            65             4667888 7778988853

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.0025  Score=52.78  Aligned_cols=70  Identities=9%  Similarity=-0.036  Sum_probs=61.6

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh------HHHHHHHHHHHHHhc
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIRCV  511 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~~~  511 (676)
                      .|++++|...|++++..+|.++..|...+..+...|++++|+..+++++ ...|++      ...+..........+
T Consensus        17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~~   92 (111)
T 2l6j_A           17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-RYTSTAEHVAIRSKLQYRLELAQGAVG   92 (111)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            4779999999999999999999999999999999999999999999999 889987      666766666555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.07  E-value=0.0031  Score=62.07  Aligned_cols=100  Identities=14%  Similarity=0.096  Sum_probs=83.2

Q ss_pred             cchhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----c-CchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCC
Q 005817          136 DFSGVARILEIYRLAVMRFKG--DIELWFKYMEFCRQR-----K-NGRMKKVLAQVIRFHPKV-PGVWIYAAAWEFDHNL  206 (676)
Q Consensus       136 ~~~~~~~~~~iyeral~~~p~--~~~lW~~y~~~~~~~-----~-~~~~~~~~~ral~~~P~~-~~lW~~~a~~e~~~~~  206 (676)
                      -.+....+..+++||+...|+  +...|..+..++...     | .++++..|+|||.++|+. ...++.|+.+.....|
T Consensus       175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred             HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence            345678899999999999999  677999999998874     4 478999999999999975 9999999999865568


Q ss_pred             CHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 005817          207 NVTAARALMQNGLRVCPTS---EELWVEYLRM  235 (676)
Q Consensus       207 ~~~~Ar~~~~ral~~~p~~---~~lW~~y~~~  235 (676)
                      +.+.|+..++++++..|..   ..++....+=
T Consensus       255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~  286 (301)
T 3u64_A          255 NRAGFDEALDRALAIDPESVPHNKLLVILSQK  286 (301)
T ss_dssp             CHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCChhHHHHHHHH
Confidence            9999999999999988863   3455444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.05  E-value=0.038  Score=55.06  Aligned_cols=84  Identities=7%  Similarity=-0.089  Sum_probs=61.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh------HHHHHHHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAMGCLTED------IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEI  508 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~------lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~  508 (676)
                      .++++.|...|++++...+..+.      .+...+.++...|++++|...+++++ ...+..      ..+|...+.+..
T Consensus        88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 2qfc_A           88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-TTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHH
Confidence            36789999999999988665432      23345666778899999999999999 644432      456666666666


Q ss_pred             HhccccCCCCChhchHHHHHHHHHHHh
Q 005817          509 RCVTRNSFSPSKADILSIFELLKCILT  535 (676)
Q Consensus       509 ~~~~~~~~~p~~~~~~~~~~~f~~Al~  535 (676)
                      ..+          +.+++.+.|++|+.
T Consensus       167 ~~~----------~~~~A~~~~~kal~  183 (293)
T 2qfc_A          167 ENG----------YLKKGIDLFEQILK  183 (293)
T ss_dssp             HTT----------CHHHHHHHHHHHHH
T ss_pred             HcC----------CHHHHHHHHHHHHH
Confidence            655          47888899999984

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.02  E-value=0.017  Score=53.45  Aligned_cols=85  Identities=12%  Similarity=-0.096  Sum_probs=62.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------cCCChHHHHHHHHHHHHHhcccc
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSG------KLSDSVQLWLLRISVEIRCVTRN  514 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~------~~P~~~~lW~~~i~l~~~~~~~~  514 (676)
                      .|.++.|..+++......+.....+...+..+...|++++|...+++++ .      ..|.....+.....+....|   
T Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g---   80 (203)
T 3gw4_A            5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ-QQAQKSGDHTAEHRALHQVGMVERMAG---   80 (203)
T ss_dssp             --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred             cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHcC---
Confidence            4678888885554444333567889999999999999999999999999 5      23334566666666666655   


Q ss_pred             CCCCChhchHHHHHHHHHHHhh
Q 005817          515 SFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       515 ~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                             +.+++.+.|++++..
T Consensus        81 -------~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           81 -------NWDAARRCFLEEREL   95 (203)
T ss_dssp             -------CHHHHHHHHHHHHHH
T ss_pred             -------CHHHHHHHHHHHHHH
Confidence                   478888888988875

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.00  E-value=0.0055  Score=56.90  Aligned_cols=137  Identities=9%  Similarity=-0.063  Sum_probs=89.4

Q ss_pred             CChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc---hh-HHHHHHHHHHHHhcCccccccCCCCC
Q 005817          362 VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS---SM-IFDLYTKFLMDMIAPKKEETRDSELP  437 (676)
Q Consensus       362 ~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~---~~-lw~~y~~~~~~~~~~~~~d~~~~~~~  437 (676)
                      ....++..++..+..             .++++.|...|++++.....   .. ....+...-.-..             
T Consensus        24 ~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-------------   77 (203)
T 3gw4_A           24 TASGARFMLGYVYAF-------------MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-------------   77 (203)
T ss_dssp             THHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHHHH-------------hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-------------
Confidence            345667777777765             57899999999999984321   11 1111111111111             


Q ss_pred             hhhhhhHHHHHHHHHHHHHc---CCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC---Ch---HHHHHHHH
Q 005817          438 SHVEHYISHLLTVYEKAEAM---GCLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS---DS---VQLWLLRI  504 (676)
Q Consensus       438 ~~~~~~~~~a~~iye~al~~---~p~~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P---~~---~~lW~~~i  504 (676)
                        ..|+++.|...|++++..   .+.+    ...+...+..+...|++++|...+++++ ...+   +.   ...+...+
T Consensus        78 --~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la  154 (203)
T 3gw4_A           78 --MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL-VYAQQADDQVAIACAFRGLG  154 (203)
T ss_dssp             --HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred             --HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHhccchHHHHHHHHHHH
Confidence              246789999999999886   3422    4567788999999999999999999998 4322   21   22334445


Q ss_pred             HHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817          505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKV  537 (676)
Q Consensus       505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~  537 (676)
                      .+....|          +.+++.+.|++|+...
T Consensus       155 ~~~~~~g----------~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          155 DLAQQEK----------NLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHTT----------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHCc----------CHHHHHHHHHHHHHHH
Confidence            5555555          4788888888888643

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.90  E-value=0.049  Score=53.53  Aligned_cols=126  Identities=13%  Similarity=0.095  Sum_probs=84.2

Q ss_pred             HHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHHHHHHHHHhcCcccc
Q 005817          354 SDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLMDMIAPKKEE  430 (676)
Q Consensus       354 ~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y~~~~~~~~~~~~~d  430 (676)
                      .-+.+..|++.+.+++.|-....-...  ..+..........|+..++++++.-|+-   ..|.....+....- .    
T Consensus       142 ~~l~~~~~~dve~L~W~ai~~ss~a~~--~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vP-p----  214 (301)
T 3u64_A          142 KVLSRCTRVDVGTLYWVGTGYVAAFAL--TPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAP-E----  214 (301)
T ss_dssp             HHHTTCCGGGHHHHHHHHHHHHHHHTT--SCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSC-T----
T ss_pred             HHHHHcCccccHHHHHHHHHHHHHHhc--CCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCC-C----
Confidence            334455677766544444332110000  0011223567889999999999998872   24444433333211 0    


Q ss_pred             ccCCCCChhhhhhHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhccCCC
Q 005817          431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLT-EDIAHRYVTLYLQL-GKLDEARKLAAKLCSGKLSD  495 (676)
Q Consensus       431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~-~~lw~~~~~l~~~~-~~~~~A~~l~~~al~~~~P~  495 (676)
                              ..-|+.++|+..|++|+..+|.. .+.+..|++++... |+.+.|...+++++ ...|+
T Consensus       215 --------~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL-~a~p~  272 (301)
T 3u64_A          215 --------SFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL-AIDPE  272 (301)
T ss_dssp             --------TTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HCCGG
T ss_pred             --------ccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH-cCCCC
Confidence                    01267899999999999999975 99999999999885 99999999999999 65554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.85  E-value=0.007  Score=49.05  Aligned_cols=57  Identities=12%  Similarity=0.040  Sum_probs=50.8

Q ss_pred             CchHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005817          173 NGRMKKVLAQVIRFHPKVPG-VWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV  230 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~-lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~  230 (676)
                      +..+...|++++...|.++. +|...+.... ..|+++.|...|++++...|++..+|.
T Consensus        16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~   73 (99)
T 2kc7_A           16 IENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQA   73 (99)
T ss_dssp             HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            57889999999999999999 9999998876 678999999999999999999888773

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.85  E-value=0.0042  Score=50.44  Aligned_cols=60  Identities=18%  Similarity=0.048  Sum_probs=55.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817          441 EHYISHLLTVYEKAEAMGCLTED-IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL  501 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~-lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~  501 (676)
                      .++++.|...|++++..+|.++. .|...+..+...|++++|...+++++ ...|++...|.
T Consensus        13 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~   73 (99)
T 2kc7_A           13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI-ELNPDSPALQA   73 (99)
T ss_dssp             HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCcHHHHH
Confidence            47789999999999999999999 99999999999999999999999999 88999888773

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.79  E-value=0.0085  Score=52.73  Aligned_cols=134  Identities=9%  Similarity=-0.083  Sum_probs=86.5

Q ss_pred             hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHHHHHHHHHHHhcCccccccCCCCChhhhhh
Q 005817          366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY  443 (676)
Q Consensus       366 ~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~  443 (676)
                      ++..+|..+..             .+++++|...|+++++..+...  .....+........             ...|+
T Consensus        11 ~~~~l~~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~-------------~~~g~   64 (164)
T 3ro3_A           11 AFGNLGNTHYL-------------LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAY-------------IFLGE   64 (164)
T ss_dssp             HHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------HHTTC
T ss_pred             HHHHHHHHHHH-------------hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-------------HHcCC
Confidence            45566666654             4779999999999998654321  11111111111110             12467


Q ss_pred             HHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC---C---hHHHHHHHHHHHHHhc
Q 005817          444 ISHLLTVYEKAEAMGCL------TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS---D---SVQLWLLRISVEIRCV  511 (676)
Q Consensus       444 ~~~a~~iye~al~~~p~------~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P---~---~~~lW~~~i~l~~~~~  511 (676)
                      +++|...|++++...+.      ....+...+..+...|++++|...+++++ ...+   +   ....+...+.+....+
T Consensus        65 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~la~~~~~~g  143 (164)
T 3ro3_A           65 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQELKDRIGEGRACWSLGNAYTALG  143 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHccchHhHHHHHHHHHHHHHHcc
Confidence            89999999999876322      14578888999999999999999999998 5322   1   2344455555555554


Q ss_pred             cccCCCCChhchHHHHHHHHHHHhh
Q 005817          512 TRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       512 ~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                                +.+++.+.|++++..
T Consensus       144 ----------~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          144 ----------NHDQAMHFAEKHLEI  158 (164)
T ss_dssp             ----------CHHHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHHHH
Confidence                      467888888888764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.026  Score=59.47  Aligned_cols=195  Identities=11%  Similarity=-0.006  Sum_probs=115.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH-H
Q 005817          441 EHYISHLLTVYEKAEAMGCLTE-----------------DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL-L  502 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~-----------------~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~-~  502 (676)
                      .|++++|...|.+++...|...                 ......+.++...|++++|...+.+++ ...+....--. .
T Consensus        17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~   95 (434)
T 4b4t_Q           17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST-EYMMQFAKSKTVK   95 (434)
T ss_dssp             HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH-HHHHTSCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHccchHHHH
Confidence            4668888899998888765532                 246778899999999999999999998 54443211111 1


Q ss_pred             HHH--HHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhC
Q 005817          503 RIS--VEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKD  574 (676)
Q Consensus       503 ~i~--l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~----~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~  574 (676)
                      .+.  +..-...       .++.+.+.+++++++...+...    ...++...+..+...+  ..+...++.+...+...
T Consensus        96 ~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~  168 (434)
T 4b4t_Q           96 VLKTLIEKFEQV-------PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL  168 (434)
T ss_dssp             HHHHHHHHHCSC-------CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence            111  1111111       1257888888998886432111    1233433333333333  33445555555443322


Q ss_pred             CCCCCCcchHHHH---HHHHHHhcCHHHHHHHHHHHHcC----C-CCC--HHHHHHHHHHHhhccCCCCccchHHHHHHH
Q 005817          575 GGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLAL----P-RPG--LVLYQNCIELENNLASVGDKDSLVNARKLF  644 (676)
Q Consensus       575 ~~~~~~~~~~~~y---~~~~~~~g~~~~Ar~iy~~al~~----~-p~~--~~l~~~~i~lE~~~~~~~~~~~~~~aR~ly  644 (676)
                      ..   .+.....|   +......|++++|+.+|++++..    + |+.  ..++.....+....+      +.+.|...|
T Consensus       169 ~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~y~~A~~~~  239 (434)
T 4b4t_Q          169 DD---KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK------DYKTAFSYF  239 (434)
T ss_dssp             SC---STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS------CHHHHHHHH
T ss_pred             cc---chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH------hHHHHHHHH
Confidence            21   22333233   44566789999999999999753    1 211  234555555555555      899999999


Q ss_pred             HHHHhhCC
Q 005817          645 ESALATYD  652 (676)
Q Consensus       645 e~al~~~~  652 (676)
                      ..++..++
T Consensus       240 ~~a~~~~~  247 (434)
T 4b4t_Q          240 FESFESYH  247 (434)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998765

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=96.60  E-value=0.052  Score=47.83  Aligned_cols=137  Identities=9%  Similarity=0.121  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh----HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHH
Q 005817          523 ILSIFELLKCILTKVSALESESLWLMALKFFMNQK----HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ  598 (676)
Q Consensus       523 ~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~  598 (676)
                      ...+++.|+..|.....++.+.+|..|+.+.+.+-    ..+..++++++..+.....-.+-+-....++.+.   ...+
T Consensus         6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya---~~~~   82 (152)
T 4a1g_A            6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFA---EYNS   82 (152)
T ss_dssp             HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHH---TTBS
T ss_pred             HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHH---HhcC
Confidence            45677789999998877788999999998886542    3466788888776532211001111122223332   2234


Q ss_pred             HHHHHHHHHHcC--CCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC-CchHHHHHHHHHhhc
Q 005817          599 QAREMYKRFLAL--PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-NTSLWRDYYSTETKV  668 (676)
Q Consensus       599 ~Ar~iy~~al~~--~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~-~~~lW~~y~~fE~~~  668 (676)
                      .++.+|.-+...  ......+|..++.+-...+      +.+.|.++|+.+++.... -..+--.|.+|+...
T Consensus        83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g------~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~  149 (152)
T 4a1g_A           83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQG------ELQHASAVLQRGIQNQAEPREFLQQQYRLFQTRL  149 (152)
T ss_dssp             CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHh
Confidence            488999987643  3445669999998776777      899999999999997552 238888899998764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.58  E-value=0.22  Score=50.97  Aligned_cols=152  Identities=10%  Similarity=-0.092  Sum_probs=100.0

Q ss_pred             HHHHhcCCCChhhHHHHH--HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-----HHHHHHHHHHHHhcC
Q 005817          354 SDMQRDFLVDPKYWDWLA--RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-----IFDLYTKFLMDMIAP  426 (676)
Q Consensus       354 ~~~~~~~p~~~~~w~~la--~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-----lw~~y~~~~~~~~~~  426 (676)
                      +++.+.-|.++.+|..+-  ..++...+          ...+.+|+..|++|++.-|+..     +...|+  ...... 
T Consensus       184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~----------~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~--~~~~~~-  250 (372)
T 3ly7_A          184 ETLQKILPHRGALLTNFYQAHDYLLHGD----------DKSLNRASELLGEIVQSSPEFTYARAEKALVDI--VRHSQH-  250 (372)
T ss_dssp             HHHHHHSCSSGGGHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHHHHS-
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHhccC-
Confidence            345566788888876553  33332211          4567899999999999999743     222332  211110 


Q ss_pred             ccccccCCCCChhhhhhHHHHHHHHHHH--HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817          427 KKEETRDSELPSHVEHYISHLLTVYEKA--EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI  504 (676)
Q Consensus       427 ~~~d~~~~~~~~~~~~~~~~a~~iye~a--l~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i  504 (676)
                       ...          ......+...++.+  +..+|.++..+..++-.....|++++|...+++|+ ...|+ ...|....
T Consensus       251 -~~~----------~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl-~Ln~s-~~a~~llG  317 (372)
T 3ly7_A          251 -PLD----------EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGI-DLEMS-WLNYVLLG  317 (372)
T ss_dssp             -CCC----------HHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCCC-HHHHHHHH
T ss_pred             -CCc----------hhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCC-HHHHHHHH
Confidence             000          12233334444432  24468889999988888888899999999999999 77764 45555656


Q ss_pred             HHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh
Q 005817          505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE  541 (676)
Q Consensus       505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~  541 (676)
                      .+....|          +.+++.+.|.+|+...|...
T Consensus       318 ~~~~~~G----------~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          318 KVYEMKG----------MNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHTT----------CHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHCC----------CHHHHHHHHHHHHhcCCCcC
Confidence            6666556          47999999999999877543

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.084  Score=48.71  Aligned_cols=141  Identities=12%  Similarity=0.091  Sum_probs=96.1

Q ss_pred             chHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhhh----H----HHH-HHHHHHHHhhhhCCCCCCCcchHHHHHHH
Q 005817          522 DILSIFELLKCILTK--VSALESESLWLMALKFFMNQK----H----YFD-KLVEIALISVAKDGGGESGFSLPSAIINL  590 (676)
Q Consensus       522 ~~~~~~~~f~~Al~~--~~~~~~~~lW~~~l~~~~~~~----~----~~~-~~~~~a~~~~~~~~~~~~~~~~~~~y~~~  590 (676)
                      .+...++.|++.|..  -..++.+.+|..|+.+.+.+-    .    .+- .++++++..+.....-.+-+-....++.+
T Consensus         7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y   86 (202)
T 3esl_A            7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY   86 (202)
T ss_dssp             HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence            467788889999987  445567889999998776442    1    133 78888887553322111112222233333


Q ss_pred             HHH--hcCHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC-CchHHHHHHHHH
Q 005817          591 VIQ--KDGIQQAREMYKRFLA--LPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-NTSLWRDYYSTE  665 (676)
Q Consensus       591 ~~~--~g~~~~Ar~iy~~al~--~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~-~~~lW~~y~~fE  665 (676)
                      .-.  .++...++.+|.-+..  +......+|..++.+-...+      ++.+|.++|+.+++.... -..+--.|.+|+
T Consensus        87 a~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g------~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~  160 (202)
T 3esl_A           87 INLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQ------FFLEAKVLLELGAENNCRPYNRLLRSLSNYE  160 (202)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred             HHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence            333  4557799999998754  44555679999998777777      899999999999997542 238888899998


Q ss_pred             hhc
Q 005817          666 TKV  668 (676)
Q Consensus       666 ~~~  668 (676)
                      .+.
T Consensus       161 ~R~  163 (202)
T 3esl_A          161 DRL  163 (202)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.48  E-value=0.13  Score=55.72  Aligned_cols=172  Identities=10%  Similarity=0.060  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh-cChhhh
Q 005817          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK-VSALES  542 (676)
Q Consensus       464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~-~~~~~~  542 (676)
                      ++..-++...+.|++++|+.++++.....++.+...|...|....+.+....... ..+++++.++|.+.... +.++  
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~-~~~l~~A~~lf~~M~~~G~~Pd--  104 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP-NPGLSRGFDIFKQMIVDKVVPN--  104 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC-CHHHHHHHHHHHHHHHTTCCCC--
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh-cchHHHHHHHHHHHHHhCCCCC--
Confidence            4556677788999999999999998855677777888888876654432111111 13578888999887764 4333  


Q ss_pred             HHHHHHHHHHHHhhh--HHHHHHHHHHHHh-hhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcC-CCCCHHHH
Q 005817          543 ESLWLMALKFFMNQK--HYFDKLVEIALIS-VAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLY  618 (676)
Q Consensus       543 ~~lW~~~l~~~~~~~--~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~-~p~~~~l~  618 (676)
                      ...|...+.-+.+.+  +.+..+++.+... +.|+      ...+...+.-..+.|+.++|..+|+..... ..++...|
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty  178 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL  178 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence            224555555554444  4566667665531 2222      122334566677899999999999999764 45667788


Q ss_pred             HHHHHHHhhccCCCCccchHHHHHHHHHHHhh
Q 005817          619 QNCIELENNLASVGDKDSLVNARKLFESALAT  650 (676)
Q Consensus       619 ~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~  650 (676)
                      ...|..-...|      +.++|..+|++.-+.
T Consensus       179 ~~Li~~~~~~g------~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          179 AALLKVSMDTK------NADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCC------CHHHHHHHHHHHHHh
Confidence            88887777777      899999999998765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.45  E-value=0.031  Score=48.90  Aligned_cols=140  Identities=11%  Similarity=-0.084  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh------HHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817          462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (676)
Q Consensus       462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~  535 (676)
                      ..++...+..+...|++++|...+++++ ...|..      ...+...+......+          +.+++.+.|++++.
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~a~~   77 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLG----------EFETASEYYKKTLL   77 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHH
Confidence            3567778888889999999999999998 654432      134444455554444          36777777777765


Q ss_pred             hcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCC---
Q 005817          536 KVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPR---  612 (676)
Q Consensus       536 ~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p---  612 (676)
                      ..+...... +.                                 .......+......|++++|...+++++...+   
T Consensus        78 ~~~~~~~~~-~~---------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  123 (164)
T 3ro3_A           78 LARQLKDRA-VE---------------------------------AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK  123 (164)
T ss_dssp             HHHHTTCHH-HH---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCcH-HH---------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence            432111000 00                                 00011223335567888888888888865421   


Q ss_pred             C---CHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          613 P---GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       613 ~---~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      .   ....+.....+....+      +.+.|...|+++++...
T Consensus       124 ~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          124 DRIGEGRACWSLGNAYTALG------NHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHT
T ss_pred             chHhHHHHHHHHHHHHHHcc------CHHHHHHHHHHHHHHHH
Confidence            1   1223444445555556      77888888888887654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.25  E-value=0.068  Score=56.16  Aligned_cols=168  Identities=11%  Similarity=-0.004  Sum_probs=103.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH-----------------HHHHHHHHHHHHhccccCCCCChhchHHHH
Q 005817          465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-----------------QLWLLRISVEIRCVTRNSFSPSKADILSIF  527 (676)
Q Consensus       465 w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~-----------------~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~  527 (676)
                      -+.-+.-+...|++++|.+.|.+++ ...|...                 ......+.++...|          +.+++.
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~----------~~~~a~   75 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLL-DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG----------AKDKLR   75 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH-HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT----------CHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH-hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC----------CHHHHH
Confidence            3445566678899999999999999 6666421                 23445556665555          478888


Q ss_pred             HHHHHHHhhc---ChhhhHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhhhCCCCCCCcchHH---HHHHHHHHhcCHH
Q 005817          528 ELLKCILTKV---SALESESLWLMALKFFMNQK---HYFDKLVEIALISVAKDGGGESGFSLPS---AIINLVIQKDGIQ  598 (676)
Q Consensus       528 ~~f~~Al~~~---~~~~~~~lW~~~l~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~y~~~~~~~g~~~  598 (676)
                      +.|.+++...   +.......-...++.+....   +....+++.++........   ...+..   ..+......|+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~  152 (434)
T 4b4t_Q           76 EFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---VFLKHSLSIKLATLHYQKKQYK  152 (434)
T ss_dssp             HHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC---CSSHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHccChH
Confidence            8899888643   22111111122233332221   3344455555543322221   223332   3456677899999


Q ss_pred             HHHHHHHHHHcCC------CCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          599 QAREMYKRFLALP------RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       599 ~Ar~iy~~al~~~------p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      +|..++++++...      +....++...+.+....+      ++++|+.+|++++...+
T Consensus       153 ~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          153 DSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR------NLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC------cHHHHHHHHHHHHHHhh
Confidence            9999999986531      112346666667777777      99999999999998765

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.21  E-value=0.037  Score=48.92  Aligned_cols=92  Identities=10%  Similarity=0.022  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CchHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCCHHHH
Q 005817          138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFH-P-KVPGVWIYAAAWEFDHNLNVTAA  211 (676)
Q Consensus       138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~-P-~~~~lW~~~a~~e~~~~~~~~~A  211 (676)
                      ....+++.-|++.+...|.+.+...+|+--+.+.+    ..+...+|+..+... | +..+.++..+--.+ ..+++++|
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~~A   90 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHHHH
Confidence            45678889999999999999999999998777654    247889999999998 7 44566666666555 68899999


Q ss_pred             HHHHHHHHHhCCCCHHHHH
Q 005817          212 RALMQNGLRVCPTSEELWV  230 (676)
Q Consensus       212 r~~~~ral~~~p~~~~lW~  230 (676)
                      +..++++|+..|++.+.-.
T Consensus        91 ~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHH
Confidence            9999999999999865433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.01  E-value=0.94  Score=48.85  Aligned_cols=160  Identities=9%  Similarity=0.127  Sum_probs=113.4

Q ss_pred             CcHHHHHHHHHHHHhc-CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhc--cCchhHHHHHHHHH
Q 005817          344 QSDDMHDKILSDMQRD-FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN--VPSSMIFDLYTKFL  420 (676)
Q Consensus       344 ~~~~~a~~il~~~~~~-~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~--~~~~~lw~~y~~~~  420 (676)
                      +..+.|..+++++.+. .+-+..+|..+...+-.....    ......+.+++|.++|++....  .|+...|...+...
T Consensus        40 G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~----~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~  115 (501)
T 4g26_A           40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAA----TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA  115 (501)
T ss_dssp             CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCC----SSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCch----hhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            3456777888877664 233455566555544221100    0011246789999999988765  35555665555544


Q ss_pred             HHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHH
Q 005817          421 MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL  499 (676)
Q Consensus       421 ~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~-p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l  499 (676)
                      .+                  .|.++.|..+|++....+ ..+...|...+..+.+.|+.++|..++++.....+..+...
T Consensus       116 ~~------------------~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t  177 (501)
T 4g26_A          116 VA------------------KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE  177 (501)
T ss_dssp             HH------------------HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             Hh------------------cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence            43                  477899999999988774 34677888899999999999999999999886566667788


Q ss_pred             HHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817          500 WLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (676)
Q Consensus       500 W~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~  535 (676)
                      |...|....+.|          +++++.++|++.-.
T Consensus       178 y~~Li~~~~~~g----------~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          178 LAALLKVSMDTK----------NADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHHTT----------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCC----------CHHHHHHHHHHHHH
Confidence            999998888876          47888888888654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.92  E-value=0.033  Score=45.00  Aligned_cols=71  Identities=13%  Similarity=-0.010  Sum_probs=58.6

Q ss_pred             CCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHH
Q 005817          458 GCLTEDIAHRYVTLYLQLGK---LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL  534 (676)
Q Consensus       458 ~p~~~~lw~~~~~l~~~~~~---~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al  534 (676)
                      +|.++++|..|++.+...++   .++|..++++++ +..|+++..+..........|          +.+++...+++.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL-~~dp~~~rA~~~lg~~~~~~g----------~y~~Ai~~w~~~l   70 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL-QLEPYNEAALSLIANDHFISF----------RFQEAIDTWVLLL   70 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHCcCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHH
Confidence            58889999999998875544   688999999999 889999988888888887766          4788888888888


Q ss_pred             hhcCh
Q 005817          535 TKVSA  539 (676)
Q Consensus       535 ~~~~~  539 (676)
                      ...|.
T Consensus        71 ~~~p~   75 (93)
T 3bee_A           71 DSNDP   75 (93)
T ss_dssp             TCCCT
T ss_pred             hhCCC
Confidence            87665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.58  E-value=0.75  Score=46.99  Aligned_cols=156  Identities=9%  Similarity=-0.031  Sum_probs=97.4

Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHhccc--CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHH
Q 005817          317 SGAVEALPSSFNLRQRFFEIVEATNLA--QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ  394 (676)
Q Consensus       317 ~~Al~~~p~~~~~~~~~~~~~~~fe~~--~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~  394 (676)
                      +++....|.+.+.|..++.....+...  .....+..+++++++..|+...+|..++..++...... +.    ......
T Consensus       184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~-~~----~~~~~~  258 (372)
T 3ly7_A          184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH-PL----DEKQLA  258 (372)
T ss_dssp             HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS-CC----CHHHHH
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-CC----chhhHH
Confidence            345566788877777666554333211  13467889999999999999888775554443210000 00    012233


Q ss_pred             HHHHHHHHHh--hccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 005817          395 KAIQVYEEAL--KNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTL  471 (676)
Q Consensus       395 ~A~~~ye~al--~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l  471 (676)
                      .....++.+.  ...|... .+..+.-...                  ..|+++.|...+++|+..+|. ...|...+..
T Consensus       259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l------------------~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~  319 (372)
T 3ly7_A          259 ALNTEIDNIVTLPELNNLSIIYQIKAVSAL------------------VKGKTDESYQAINTGIDLEMS-WLNYVLLGKV  319 (372)
T ss_dssp             HHHHHHHHHHTCGGGTTCHHHHHHHHHHHH------------------HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCcCHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence            3333333221  2223322 3333322121                  147799999999999999874 5667778888


Q ss_pred             HHhcCCHHHHHHHHHHHhhccCCChH
Q 005817          472 YLQLGKLDEARKLAAKLCSGKLSDSV  497 (676)
Q Consensus       472 ~~~~~~~~~A~~l~~~al~~~~P~~~  497 (676)
                      +.-.|++++|...|++|+ ...|...
T Consensus       320 ~~~~G~~~eA~e~~~~Al-rL~P~~~  344 (372)
T 3ly7_A          320 YEMKGMNREAADAYLTAF-NLRPGAN  344 (372)
T ss_dssp             HHHTTCHHHHHHHHHHHH-HHSCSHH
T ss_pred             HHHCCCHHHHHHHHHHHH-hcCCCcC
Confidence            889999999999999999 8888764

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=94.83  E-value=0.37  Score=43.05  Aligned_cols=132  Identities=11%  Similarity=0.085  Sum_probs=84.2

Q ss_pred             HHHHHHHhhcChhhhHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHH
Q 005817          528 ELLKCILTKVSALESESLWLMALKFFMNQK------HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR  601 (676)
Q Consensus       528 ~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar  601 (676)
                      +.|+..|.....++.+.+|..|+.+.+.+-      ..+..++++++..+.....-.+-+-....++.+.-..   +.++
T Consensus         4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~p~   80 (164)
T 2wvi_A            4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NEPL   80 (164)
T ss_dssp             HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SCHH
T ss_pred             HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CCHH
Confidence            347777775555667889999988776532      1245678887775533221101112222333333223   3477


Q ss_pred             HHHHHHHc--CCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC-CchHHHHHHHHHhhc
Q 005817          602 EMYKRFLA--LPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-NTSLWRDYYSTETKV  668 (676)
Q Consensus       602 ~iy~~al~--~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~-~~~lW~~y~~fE~~~  668 (676)
                      .+|.-+..  +......+|..++.+-...+      +..+|.++|..+++.... ...+--.|..|+...
T Consensus        81 ~if~~L~~~~IG~~~AlfY~~wA~~lE~~~------~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~  144 (164)
T 2wvi_A           81 DMYSYLHNQGIGVSLAQFYISWAEEYEARE------NFRKADAIFQEGIQQKAEPLERLQSQHRQFQARV  144 (164)
T ss_dssp             HHHHHHHHTTSSTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcchhhHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            78887754  34445678999888766777      899999999999997642 237888888887654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=94.68  E-value=0.15  Score=54.98  Aligned_cols=85  Identities=7%  Similarity=0.012  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHHHHhhccC----chh--HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc-----C
Q 005817          390 PSQMQKAIQVYEEALKNVP----SSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----G  458 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~----~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~-----~  458 (676)
                      ++++++|...|+++|+...    ...  +-..+-.+-.-..               .+|.+++|..+|++++..     +
T Consensus       322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~---------------~~g~~~eA~~~~~~aL~i~~~~lG  386 (490)
T 3n71_A          322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS---------------YLQAYEEASHYARRMVDGYMKLYH  386 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---------------HhcCHHHHHHHHHHHHHHHHHHcC
Confidence            4788999999999997521    111  2222222211111               257789999999998864     5


Q ss_pred             CCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          459 CLTED---IAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       459 p~~~~---lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      |.+|+   .+...+.++..+|++++|..++++|+
T Consensus       387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            66655   57778888999999999999999998

>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=94.16  E-value=0.84  Score=42.78  Aligned_cols=136  Identities=8%  Similarity=0.095  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhhh-------HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHh
Q 005817          523 ILSIFELLKCILTKV-SALESESLWLMALKFFMNQK-------HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQK  594 (676)
Q Consensus       523 ~~~~~~~f~~Al~~~-~~~~~~~lW~~~l~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~  594 (676)
                      ++..+..|+..|... ..++.+.+|..|+.+.+..-       ..+..++++++..+.....-.+-+-....++.+.   
T Consensus        51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya---  127 (223)
T 4aez_C           51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYV---  127 (223)
T ss_dssp             HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHH---
Confidence            566777899999874 34567889999998876542       1256788888876533211101111111222222   


Q ss_pred             cCHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC-CchHHHHHHHHHhh
Q 005817          595 DGIQQAREMYKRFLA--LPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-NTSLWRDYYSTETK  667 (676)
Q Consensus       595 g~~~~Ar~iy~~al~--~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~-~~~lW~~y~~fE~~  667 (676)
                      ...+.++.+|.-+..  +......+|..++.+-...+      ++..|.++|..+++.... -..+--.|.+|+.+
T Consensus       128 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g------~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R  197 (223)
T 4aez_C          128 NYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRG------LFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR  197 (223)
T ss_dssp             TTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred             HccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence            123577888887754  34455679999998777777      899999999999998653 23888889999887

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.03  E-value=0.95  Score=39.05  Aligned_cols=115  Identities=15%  Similarity=0.063  Sum_probs=81.8

Q ss_pred             chhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817          389 VPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (676)
Q Consensus       389 ~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~  468 (676)
                      +.+++++|...|+++.+.-+....    +..   .+..              ...+++|...|++|...  .++..+...
T Consensus         7 ~~~d~~~A~~~~~~aa~~g~~~a~----lg~---~y~~--------------g~~~~~A~~~~~~Aa~~--g~~~a~~~L   63 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELNEMFGC----LSL---VSNS--------------QINKQKLFQYLSKACEL--NSGNGCRFL   63 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTHH----HHH---HTCT--------------TSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHcCCCHhhh----HHH---HHHc--------------CCCHHHHHHHHHHHHcC--CCHHHHHHH
Confidence            357899999999999976543322    111   1111              13356699999999987  567888899


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh-ccccCCCCChhchHHHHHHHHHHHhh
Q 005817          469 VTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC-VTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       469 ~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~-~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      +.++..    .+++++|...+++|+ ..  .++........+...- +.     +  .|.+++.+.|++|...
T Consensus        64 g~~y~~G~g~~~d~~~A~~~~~~Aa-~~--g~~~a~~~Lg~~y~~G~g~-----~--~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           64 GDFYENGKYVKKDLRKAAQYYSKAC-GL--NDQDGCLILGYKQYAGKGV-----V--KNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHH-HT--TCHHHHHHHHHHHHHTSSS-----C--CCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCccHHHHHHHHHHHH-cC--CCHHHHHHHHHHHHCCCCC-----C--cCHHHHHHHHHHHHHC
Confidence            999988    789999999999999 43  4555566666555541 11     1  2689999999999875

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.42  E-value=0.47  Score=41.83  Aligned_cols=89  Identities=9%  Similarity=0.096  Sum_probs=71.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhccC-C-ChHHHHHHHHHHHHHhccccC
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG---KLDEARKLAAKLCSGKL-S-DSVQLWLLRISVEIRCVTRNS  515 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~---~~~~A~~l~~~al~~~~-P-~~~~lW~~~i~l~~~~~~~~~  515 (676)
                      ...+..++..|++.+..++.+.+..+.|+-.+.+.+   +++++..+++..+ +.. | ...+.+...+-...+.+    
T Consensus        11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll-~~~~p~~~rd~lY~LAv~~~kl~----   85 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLK----   85 (152)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTS----
T ss_pred             HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCccchHHHHHHHHHHHHHcc----
Confidence            456889999999999999999999999999999988   5668999999999 556 6 44566655554445554    


Q ss_pred             CCCChhchHHHHHHHHHHHhhcChh
Q 005817          516 FSPSKADILSIFELLKCILTKVSAL  540 (676)
Q Consensus       516 ~~p~~~~~~~~~~~f~~Al~~~~~~  540 (676)
                            +.+++++.++.+|+.-|..
T Consensus        86 ------~Y~~A~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           86 ------EYEKALKYVRGLLQTEPQN  104 (152)
T ss_dssp             ------CHHHHHHHHHHHHHHCTTC
T ss_pred             ------CHHHHHHHHHHHHhcCCCC
Confidence                  5899999999999877743

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=92.92  E-value=0.22  Score=53.69  Aligned_cols=84  Identities=7%  Similarity=-0.062  Sum_probs=62.9

Q ss_pred             hhhHHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcc--------CCChHHHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAM-----GCLTE---DIAHRYVTLYLQLGKLDEARKLAAKLCSGK--------LSDSVQLWLLRI  504 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~-----~p~~~---~lw~~~~~l~~~~~~~~~A~~l~~~al~~~--------~P~~~~lW~~~i  504 (676)
                      +|.+++|..+|++++..     ++.++   ..+...+..+..+|++++|..++++++ ..        +|.-...+...+
T Consensus       322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV-DGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHSCTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHH
Confidence            57789999999999875     45555   457778888999999999999999988 42        334445555556


Q ss_pred             HHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817          505 SVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (676)
Q Consensus       505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~  535 (676)
                      .++...|          +.+++..+|++|+.
T Consensus       401 ~~~~~~G----------~~~eA~~~~~~Al~  421 (490)
T 3n71_A          401 LTNWHAG----------HIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHTT----------CHHHHHHHHHHHHH
T ss_pred             HHHHHCC----------CHHHHHHHHHHHHH
Confidence            6666666          37888888888876

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=92.73  E-value=0.24  Score=52.35  Aligned_cols=84  Identities=14%  Similarity=0.074  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHHHHc-----CCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhcc--------CCChHHHHHHHHH
Q 005817          442 HYISHLLTVYEKAEAM-----GCLTED---IAHRYVTLYLQLGKLDEARKLAAKLCSGK--------LSDSVQLWLLRIS  505 (676)
Q Consensus       442 ~~~~~a~~iye~al~~-----~p~~~~---lw~~~~~l~~~~~~~~~A~~l~~~al~~~--------~P~~~~lW~~~i~  505 (676)
                      |.+++|..+|++++..     +|.++.   .+...+..+..+|++++|..++++++ ..        +|+-...+...+.
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII-KPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHH
Confidence            5688999999999874     566654   46667888899999999999999988 42        3444455566666


Q ss_pred             HHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          506 VEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       506 l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      ++..+|          +.+++..+|++|+..
T Consensus       391 ~~~~qg----------~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          391 LYMGLE----------NKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHTT----------CHHHHHHHHHHHHHH
T ss_pred             HHHhcc----------CHHHHHHHHHHHHHH
Confidence            666666          378888888888763

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.72  E-value=0.82  Score=37.26  Aligned_cols=73  Identities=12%  Similarity=0.037  Sum_probs=54.9

Q ss_pred             HHHHHHHHHcc-CchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817          162 FKYMEFCRQRK-NGRMKKVLAQVIRFH-------PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (676)
Q Consensus       162 ~~y~~~~~~~~-~~~~~~~~~ral~~~-------P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~  233 (676)
                      ...+.++...+ +..+..-|+.|+...       +..+.++..++...+ ..|+++.|...++++++..|++..+.....
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            34455555555 577888888888864       235778888888776 688999999999999999999987755554


Q ss_pred             HH
Q 005817          234 RM  235 (676)
Q Consensus       234 ~~  235 (676)
                      -+
T Consensus        88 ~~   89 (104)
T 2v5f_A           88 YF   89 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.08  E-value=0.57  Score=38.22  Aligned_cols=63  Identities=19%  Similarity=-0.041  Sum_probs=52.7

Q ss_pred             hhhHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAM-------GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI  504 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~-------~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i  504 (676)
                      .+++..|..-|+.|+..       ++..++++..++..+.+.|+++.|...+++++ +..|++..+.....
T Consensus        18 ~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al-~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL-ELDPEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH-hcCCCCHHHHhhHH
Confidence            36788999999999875       23468899999999999999999999999999 88999877654443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=91.49  E-value=3.2  Score=35.56  Aligned_cols=82  Identities=18%  Similarity=0.045  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 005817          392 QMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTL  471 (676)
Q Consensus       392 ~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l  471 (676)
                      .+++|...|++|.+.-........- .....-.   .           ..+++++|...|++|...  .++......+.+
T Consensus        40 ~~~~A~~~~~~Aa~~g~~~a~~~Lg-~~y~~G~---g-----------~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~  102 (138)
T 1klx_A           40 NKQKLFQYLSKACELNSGNGCRFLG-DFYENGK---Y-----------VKKDLRKAAQYYSKACGL--NDQDGCLILGYK  102 (138)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHCS---S-----------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHH-HHHHcCC---C-----------CCccHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            3566999999998753222121111 1111100   0           135689999999999886  567788888888


Q ss_pred             HHh----cCCHHHHHHHHHHHhh
Q 005817          472 YLQ----LGKLDEARKLAAKLCS  490 (676)
Q Consensus       472 ~~~----~~~~~~A~~l~~~al~  490 (676)
                      +..    .+++++|...+++|+.
T Consensus       103 y~~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A          103 QYAGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHCCCCCCcCHHHHHHHHHHHHH
Confidence            888    7899999999999983

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=90.56  E-value=0.6  Score=49.28  Aligned_cols=85  Identities=8%  Similarity=-0.010  Sum_probs=62.4

Q ss_pred             hhhHHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcc--------CCChHHHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAM-----GCLTE---DIAHRYVTLYLQLGKLDEARKLAAKLCSGK--------LSDSVQLWLLRI  504 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~-----~p~~~---~lw~~~~~l~~~~~~~~~A~~l~~~al~~~--------~P~~~~lW~~~i  504 (676)
                      +|.+++|...|++++..     +|.++   ..+...+..+...|++++|..++++++ ..        +|.-...+...+
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L-~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM-EPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-HhHHHHcCCCChHHHHHHHHHH
Confidence            46789999999999975     45554   456677888889999999999999988 42        333445555556


Q ss_pred             HHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          505 SVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      .++...|          +.+++..+|++|+..
T Consensus       379 ~~~~~~g----------~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          379 KLQLHQG----------MFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHTT----------CHHHHHHHHHHHHHH
T ss_pred             HHHHhcC----------CHHHHHHHHHHHHHH
Confidence            6666665          378888888888763

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=88.96  E-value=1  Score=47.46  Aligned_cols=84  Identities=11%  Similarity=0.072  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHhhcc----Cch-h-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc-----CC
Q 005817          391 SQMQKAIQVYEEALKNV----PSS-M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----GC  459 (676)
Q Consensus       391 ~~~~~A~~~ye~al~~~----~~~-~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~-----~p  459 (676)
                      +++++|...|+++|...    ... . +-..+-.+-.-..               .+|++++|...|++++..     +|
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~---------------~~g~~~eA~~~~~~aL~i~~~~lG~  376 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL---------------YMQDWEGALKYGQKIIKPYSKHYPV  376 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH---------------hhcCHHHHHHHHHHHHHHHHHHcCC
Confidence            56889999999998742    211 1 2222222221111               257889999999999864     56


Q ss_pred             CcHH---HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          460 LTED---IAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       460 ~~~~---lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      .+|+   .+...+.++..+|++++|..++++|+
T Consensus       377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            6665   47778888999999999999999999

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=87.14  E-value=3.6  Score=34.80  Aligned_cols=89  Identities=9%  Similarity=-0.002  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----chHHHHHHHHHHhC-CCCH--HHHHHHHHHHHHhCCCHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN----GRMKKVLAQVIRFH-PKVP--GVWIYAAAWEFDHNLNVTAA  211 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~----~~~~~~~~ral~~~-P~~~--~lW~~~a~~e~~~~~~~~~A  211 (676)
                      ...+.+.-|.+++...+.+.+.=..|+--+.+.+.    .+...+++..+... |...  -++..++-+.  ..|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y--klg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY--RLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH--HTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--HhhhHHHH
Confidence            45677888999988888888888888877666542    34678888888776 5222  2444443343  68899999


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q 005817          212 RALMQNGLRVCPTSEELW  229 (676)
Q Consensus       212 r~~~~ral~~~p~~~~lW  229 (676)
                      |..++..|+..|++.++.
T Consensus        94 ~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHhCCCCHHHH
Confidence            999999999999986643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=84.65  E-value=2.8  Score=44.06  Aligned_cols=85  Identities=8%  Similarity=-0.038  Sum_probs=58.8

Q ss_pred             hhHHHHHHHHHHHHhhcc----Cchh--HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc-----C
Q 005817          390 PSQMQKAIQVYEEALKNV----PSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----G  458 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~----~~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~-----~  458 (676)
                      .+++++|...|++++...    +...  +-..+-.+-.-.               ..+|.+++|...|++++..     +
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y---------------~~~g~~~eA~~~~~~~L~i~~~~lg  364 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDAC---------------INLGLLEEALFYGTRTMEPYRIFFP  364 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHH---------------HHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHH---------------HhhccHHHHHHHHHHHHHhHHHHcC
Confidence            357899999999999752    2221  222221211111               1257788999999988864     5


Q ss_pred             CCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817          459 CLTED---IAHRYVTLYLQLGKLDEARKLAAKLC  489 (676)
Q Consensus       459 p~~~~---lw~~~~~l~~~~~~~~~A~~l~~~al  489 (676)
                      |.+|+   .+...+.++...|++++|..++++|+
T Consensus       365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            55555   57778888999999999999999998

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=81.37  E-value=5.4  Score=44.90  Aligned_cols=49  Identities=16%  Similarity=0.174  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817          463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT  512 (676)
Q Consensus       463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~  512 (676)
                      ++...-++|++..|+++-|+.+.++|+ ...|....-|...+..++..++
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV-~~aPseF~tW~~La~vYi~l~d  386 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTST-ELALDSFESWYNLARCHIKKEE  386 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHH-hcCchhhHHHHHHHHHHHHhcc
Confidence            466667999999999999999999999 8899999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	676
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	0.002

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 30/302 (9%), Positives = 87/302 (28%), Gaps = 35/302 (11%)

Query: 158 IELWFKYMEFCRQRK---------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN--- 205
           +++W KY+++ +              R+     Q +      P +W  AA +    +   
Sbjct: 8   VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLL 67

Query: 206 ----------LNVTAARALMQNGLRV-CPTSEELWVEYLRMELTYLNKLKARKV---ALG 251
                     L    A  + +  +      +  L+  Y   E + +   K   +    L 
Sbjct: 68  AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127

Query: 252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRV 311
            +       +    +     E       +  +      ++     +   ++ +  +   V
Sbjct: 128 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187

Query: 312 LQTIYSGAVEALPSSFNLRQRFFE-IVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWL 370
              I+   ++           + + +        +  + +++L+          + W   
Sbjct: 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA-- 245

Query: 371 ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEE 430
              +     S  G    I+    ++    + E  +   ++++ D Y    MD+      E
Sbjct: 246 ---RFLAFESNIGDLASIL-KVEKRRFTAFREEYEGKETALLVDRYK--FMDLYPCSASE 299

Query: 431 TR 432
            +
Sbjct: 300 LK 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	676
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.91
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.9
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.77
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.51
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.22
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.22
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.19
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.12
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.04
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.95
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.45
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.15
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.14
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.13
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.1
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.06
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.01
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.0
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.96
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.9
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.89
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.87
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.79
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.77
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.58
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.54
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.53
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.51
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.5
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.43
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.21
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.18
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.5
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.18
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.18
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.99
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	95.99
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.82
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	94.5
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.2
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.83
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	92.83
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	89.75
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	82.12

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.9e-23  Score=211.13  Aligned_cols=246  Identities=13%  Similarity=0.224  Sum_probs=191.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817           91 LKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQ  170 (676)
Q Consensus        91 ~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~  170 (676)
                      .+.-|++||+||....                        .....+....+|+..+|+||+..+|.+.++|..|++|+..
T Consensus         7 ~~~~W~~yi~~E~~~~------------------------~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~   62 (308)
T d2onda1           7 QVDMWKKYIQWEKSNP------------------------LRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ   62 (308)
T ss_dssp             HHHHHHHHHHHHHTCT------------------------TCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc------------------------ccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            4678999999995420                        0011112346889999999999999999999999999864


Q ss_pred             cc---------------CchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHH
Q 005817          171 RK---------------NGRMKKVLAQVIRF-HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS-EELWVEYL  233 (676)
Q Consensus       171 ~~---------------~~~~~~~~~ral~~-~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~-~~lW~~y~  233 (676)
                      .+               .+.++.+|+||+.. .|.++.+|..|+.++. ..|+++.||.+|++++...|.+ ..+|..|+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~-~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~  141 (308)
T d2onda1          63 SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM  141 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHH
T ss_pred             cCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            31               24678999999975 7889999999999984 7889999999999999999975 46899999


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (676)
Q Consensus       234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (676)
                      +++...                                                                   ++++.|+
T Consensus       142 ~~~~~~-------------------------------------------------------------------~~~~~ar  154 (308)
T d2onda1         142 KFARRA-------------------------------------------------------------------EGIKSGR  154 (308)
T ss_dssp             HHHHHH-------------------------------------------------------------------HCHHHHH
T ss_pred             HHHHHc-------------------------------------------------------------------CChHHHH
Confidence            987653                                                                   1456789


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHH
Q 005817          314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM  393 (676)
Q Consensus       314 ~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~  393 (676)
                      .+|++|++..|.+...|..+                                     |..+...            .+..
T Consensus       155 ~i~~~al~~~~~~~~~~~~~-------------------------------------a~~e~~~------------~~~~  185 (308)
T d2onda1         155 MIFKKAREDARTRHHVYVTA-------------------------------------ALMEYYC------------SKDK  185 (308)
T ss_dssp             HHHHHHHTSTTCCTHHHHHH-------------------------------------HHHHHHT------------SCCH
T ss_pred             HHHHHHHHhCCCcHHHHHHH-------------------------------------HHHHHHh------------ccCH
Confidence            99999998888776555432                                     1111110            2456


Q ss_pred             HHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc----HHHHHHH
Q 005817          394 QKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT----EDIAHRY  468 (676)
Q Consensus       394 ~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~----~~lw~~~  468 (676)
                      +.|+.+|+++++..|... +|..|++++..                  .|++++||.+|++|+...|.+    ..+|..|
T Consensus       186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~------------------~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~  247 (308)
T d2onda1         186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSH------------------LNEDNNTRVLFERVLTSGSLPPEKSGEIWARF  247 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH------------------cCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            778888888888877654 88888888875                  356788999999999886654    4589999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817          469 VTLYLQLGKLDEARKLAAKLCSGKLSDS  496 (676)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~  496 (676)
                      +.++...|+.+.++++++++. +.+|..
T Consensus       248 ~~fE~~~G~~~~~~~~~~r~~-~~~~~~  274 (308)
T d2onda1         248 LAFESNIGDLASILKVEKRRF-TAFREE  274 (308)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHH-HHTTTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-HHCccc
Confidence            999999999999999999998 777764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4e-22  Score=203.48  Aligned_cols=239  Identities=13%  Similarity=0.186  Sum_probs=189.6

Q ss_pred             CHHHHHHHHHHHHHcc---------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------------CCCHHHHHHH
Q 005817          157 DIELWFKYMEFCRQRK---------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH-------------NLNVTAARAL  214 (676)
Q Consensus       157 ~~~lW~~y~~~~~~~~---------~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~-------------~~~~~~Ar~~  214 (676)
                      .+++|+.|++|++.++         ..++..+|+|||..+|.++.+|+.|+.|+.+.             .++++.|+.+
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i   86 (308)
T d2onda1           7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI   86 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHH
Confidence            5789999999987653         23578899999999999999999999987421             1235789999


Q ss_pred             HHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817          215 MQNGLRV-CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE  293 (676)
Q Consensus       215 ~~ral~~-~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (676)
                      |+||+.. +|.+..+|..|+.++...                                                      
T Consensus        87 ~~ral~~~~p~~~~l~~~ya~~~~~~------------------------------------------------------  112 (308)
T d2onda1          87 YERAISTLLKKNMLLYFAYADYEESR------------------------------------------------------  112 (308)
T ss_dssp             HHHHHTTTTTTCHHHHHHHHHHHHHT------------------------------------------------------
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHhc------------------------------------------------------
Confidence            9999974 788889999999887642                                                      


Q ss_pred             chhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005817          294 NMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN-LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR  372 (676)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~-~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~  372 (676)
                                   ++.+.|+.+|+++++..|.+.. +|..+..                                     
T Consensus       113 -------------~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~-------------------------------------  142 (308)
T d2onda1         113 -------------MKYEKVHSIYNRLLAIEDIDPTLVYIQYMK-------------------------------------  142 (308)
T ss_dssp             -------------TCHHHHHHHHHHHHTSSSSCTHHHHHHHHH-------------------------------------
T ss_pred             -------------ccHHHHHHHHHHHHHHhcCChHHHHHHHHH-------------------------------------
Confidence                         1456788899999887776532 3444332                                     


Q ss_pred             HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHH
Q 005817          373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVY  451 (676)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iy  451 (676)
                      .+..             .+.++.|+.+|+++++..|... +|..++.++...                 .++.+.|+.+|
T Consensus       143 ~~~~-------------~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~-----------------~~~~~~a~~i~  192 (308)
T d2onda1         143 FARR-------------AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC-----------------SKDKSVAFKIF  192 (308)
T ss_dssp             HHHH-------------HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT-----------------SCCHHHHHHHH
T ss_pred             HHHH-------------cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-----------------ccCHHHHHHHH
Confidence            2221             3557889999999999888654 676666554431                 25689999999


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC----hHHHHHHHHHHHHHhccccCCCCChhchHHHH
Q 005817          452 EKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD----SVQLWLLRISVEIRCVTRNSFSPSKADILSIF  527 (676)
Q Consensus       452 e~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~----~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~  527 (676)
                      ++++..+|.++.+|..|++++...|++++|+.+|++|+ ..+|.    +..+|..|+.++..+|+          ++.++
T Consensus       193 e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai-~~~~~~~~~~~~iw~~~~~fE~~~G~----------~~~~~  261 (308)
T d2onda1         193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL-TSGSLPPEKSGEIWARFLAFESNIGD----------LASIL  261 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HSSSSCGGGCHHHHHHHHHHHHHHSC----------HHHHH
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHHHcCC----------HHHHH
Confidence            99999999999999999999999999999999999999 76663    46799999999998884          88999


Q ss_pred             HHHHHHHhhcChh
Q 005817          528 ELLKCILTKVSAL  540 (676)
Q Consensus       528 ~~f~~Al~~~~~~  540 (676)
                      ++++++.+.+|..
T Consensus       262 ~~~~r~~~~~~~~  274 (308)
T d2onda1         262 KVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHHHHTTTT
T ss_pred             HHHHHHHHHCccc
Confidence            9999998877643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.2e-19  Score=183.25  Aligned_cols=373  Identities=10%  Similarity=0.044  Sum_probs=277.6

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....|..+|+++++.+|++...|...+..+...| ++.+...|++++..+|+++..|...+.... ..|+++.|...+.+
T Consensus        14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~-~~g~~~~A~~~~~~   92 (388)
T d1w3ba_          14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERGQLQEAIEHYRH   92 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhh-hhcccccccccccc
Confidence            3678899999999999999999999999988877 588999999999999999999999999886 67899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      ++...|.....+...........           .                                             
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~-----------~---------------------------------------------  116 (388)
T d1w3ba_          93 ALRLKPDFIDGYINLAAALVAAG-----------D---------------------------------------------  116 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHS-----------C---------------------------------------------
T ss_pred             ccccccccccccccccccccccc-----------c---------------------------------------------
Confidence            99999998776665554433210           0                                             


Q ss_pred             hhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccc
Q 005817          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD  377 (676)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~  377 (676)
                                 ...+...........+.............   ........+...+...+...|+.+..+..++..+.. 
T Consensus       117 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  181 (388)
T d1w3ba_         117 -----------MEGAVQAYVSALQYNPDLYCVRSDLGNLL---KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA-  181 (388)
T ss_dssp             -----------SSHHHHHHHHHHHHCTTCTHHHHHHHHHH---HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-
T ss_pred             -----------ccccccccccccccccccccccccccccc---cccchhhhhHHHHHHhhccCcchhHHHHhhcccccc-
Confidence                       00011111122222222222222111111   111234566667777888889999988888887754 


Q ss_pred             cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHH
Q 005817          378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA  456 (676)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~  456 (676)
                                  .+.++.|...++++++..|... .|.........                  .+.+++|...|+++..
T Consensus       182 ------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~  231 (388)
T d1w3ba_         182 ------------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE------------------ARIFDRAVAAYLRALS  231 (388)
T ss_dssp             ------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT------------------TTCTTHHHHHHHHHHH
T ss_pred             ------------cCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhc------------------cccHHHHHHHHHHhHH
Confidence                        4678999999999998877643 44433333222                  3567889999999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       457 ~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      .+|.....|...+..+.+.|++++|...+++++ +..|+++..|...+.+....+.          .+++.+.|+.++..
T Consensus       232 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~  300 (388)
T d1w3ba_         232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEKGS----------VAEAEDCYNTALRL  300 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHHSC----------HHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHhhhcc
Confidence            999999999999999999999999999999999 8899999999998888877663          67777777777665


Q ss_pred             cChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHH
Q 005817          537 VSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV  616 (676)
Q Consensus       537 ~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~  616 (676)
                      .|..  ...|.                                      ..+......|++++|...|++++...|....
T Consensus       301 ~~~~--~~~~~--------------------------------------~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  340 (388)
T d1w3ba_         301 CPTH--ADSLN--------------------------------------NLANIKREQGNIEEAVRLYRKALEVFPEFAA  340 (388)
T ss_dssp             CTTC--HHHHH--------------------------------------HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             CCcc--chhhh--------------------------------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            4432  11111                                      1222344678899999999999999999888


Q ss_pred             HHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCC
Q 005817          617 LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSF  670 (676)
Q Consensus       617 l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~  670 (676)
                      .+...+.+....|      +.+.|...|++|++..|++++.|...+..=.+.||
T Consensus       341 ~~~~la~~~~~~g------~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         341 AHSNLASVLQQQG------KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTT------CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            8888888877777      88999999999999999888888887776666554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.6e-15  Score=157.00  Aligned_cols=345  Identities=12%  Similarity=0.035  Sum_probs=233.7

Q ss_pred             Hcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005817          170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV  248 (676)
Q Consensus       170 ~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~  248 (676)
                      +.| ++.|.+.|+++++.+|+++.+|...+.... ..|+++.|...|+++++.+|++..+|..++.+....         
T Consensus        11 ~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~---------   80 (388)
T d1w3ba_          11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER---------   80 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhh---------
Confidence            445 578999999999999999999999999886 688999999999999999999988887776654321         


Q ss_pred             HhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh
Q 005817          249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN  328 (676)
Q Consensus       249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~  328 (676)
                                                                                ++++.|...|..+++..|....
T Consensus        81 ----------------------------------------------------------g~~~~A~~~~~~~~~~~~~~~~  102 (388)
T d1w3ba_          81 ----------------------------------------------------------GQLQEAIEHYRHALRLKPDFID  102 (388)
T ss_dssp             ----------------------------------------------------------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ----------------------------------------------------------cccccccccccccccccccccc
Confidence                                                                      2556788888888888877655


Q ss_pred             HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817          329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP  408 (676)
Q Consensus       329 ~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~  408 (676)
                      .+...........   ................+.....+...+.....             ......+...+.+.+...|
T Consensus       103 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  166 (388)
T d1w3ba_         103 GYINLAAALVAAG---DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-------------LGRLEEAKACYLKAIETQP  166 (388)
T ss_dssp             HHHHHHHHHHHHS---CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-------------TSCHHHHHHHHHHHHHHCT
T ss_pred             ccccccccccccc---cccccccccccccccccccccccccccccccc-------------cchhhhhHHHHHHhhccCc
Confidence            5544333222211   11233333344444444444444333333221             2334555566666665555


Q ss_pred             chh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005817          409 SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK  487 (676)
Q Consensus       409 ~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~  487 (676)
                      ... .+.........                  .+..+.|...+++++..+|.+++.|...+..+...|++++|...+++
T Consensus       167 ~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  228 (388)
T d1w3ba_         167 NFAVAWSNLGCVFNA------------------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR  228 (388)
T ss_dssp             TCHHHHHHHHHHHHT------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             chhHHHHhhcccccc------------------cCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHH
Confidence            432 22211111111                  24566777777777777777777777777777777777777777777


Q ss_pred             HhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005817          488 LCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIA  567 (676)
Q Consensus       488 al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a  567 (676)
                      ++ ...|.....|...+......+          +.+++.+.|++|+...|..  .                        
T Consensus       229 ~~-~~~~~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~al~~~p~~--~------------------------  271 (388)
T d1w3ba_         229 AL-SLSPNHAVVHGNLACVYYEQG----------LIDLAIDTYRRAIELQPHF--P------------------------  271 (388)
T ss_dssp             HH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTCSSC--H------------------------
T ss_pred             hH-HHhhhHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCC--H------------------------
Confidence            76 566666666666665555544          2556666666665543321  1                        


Q ss_pred             HHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHH
Q 005817          568 LISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA  647 (676)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~a  647 (676)
                                    ......+......|+.++|...|++++...|.....+...+.+....+      +++.|.++|+++
T Consensus       272 --------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~a  331 (388)
T d1w3ba_         272 --------------DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG------NIEEAVRLYRKA  331 (388)
T ss_dssp             --------------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT------CHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC------CHHHHHHHHHHH
Confidence                          111123444567889999999999999999999888888888877777      899999999999


Q ss_pred             HhhCCCCchHHHHHHHHHhhcCCccc
Q 005817          648 LATYDQNTSLWRDYYSTETKVSFSLL  673 (676)
Q Consensus       648 l~~~~~~~~lW~~y~~fE~~~G~~~~  673 (676)
                      ++.+|+++.+|...+..-...|+.+.
T Consensus       332 l~~~p~~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         332 LEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             TTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999998888887653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.8e-13  Score=134.01  Aligned_cols=244  Identities=11%  Similarity=-0.043  Sum_probs=160.5

Q ss_pred             HHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005817          163 KYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLN  241 (676)
Q Consensus       163 ~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~  241 (676)
                      ..+..+.+.| +..|...|+++++.+|+++..|...+.... ..|+++.|...|++++...|++..+|...+......  
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPDNQTALMALAVSFTNE--  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHhhhcccccccccccccccccccc--
Confidence            3343444555 578889999999999999999998888875 678999999999999999998888877766543221  


Q ss_pred             HHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHh
Q 005817          242 KLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVE  321 (676)
Q Consensus       242 ~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~  321 (676)
                                                                                       ++++.|...|++++.
T Consensus       101 -----------------------------------------------------------------~~~~~A~~~~~~~~~  115 (323)
T d1fcha_         101 -----------------------------------------------------------------SLQRQACEILRDWLR  115 (323)
T ss_dssp             -----------------------------------------------------------------TCHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------------------ccccccccchhhHHH
Confidence                                                                             244567777888887


Q ss_pred             cCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHH
Q 005817          322 ALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE  401 (676)
Q Consensus       322 ~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye  401 (676)
                      ..|+...+.............                     ...+.......              ..+...+|...|+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~--------------~~~~~~~a~~~~~  160 (323)
T d1fcha_         116 YTPAYAHLVTPAEEGAGGAGL---------------------GPSKRILGSLL--------------SDSLFLEVKELFL  160 (323)
T ss_dssp             TSTTTGGGCC------------------------------------CTTHHHH--------------HHHHHHHHHHHHH
T ss_pred             hccchHHHHHhhhhhhhhccc---------------------ccchhhHHHHH--------------HhhHHHHHHHHHH
Confidence            777653322110000000000                     00000000000              0245667778888


Q ss_pred             HHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCH
Q 005817          402 EALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKL  478 (676)
Q Consensus       402 ~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~  478 (676)
                      ++++..|...   +|.........                  .|+++.|+..|++++..+|.++..|...+..+...|++
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  222 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNL------------------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS  222 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhcccccccchhhHHHHHH------------------HHHHhhhhcccccccccccccccchhhhhhcccccccc
Confidence            8887666432   33222222221                  36678888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          479 DEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       479 ~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      ++|...+++++ +..|+++..|..++.+....|          +.+++.+.|++||...|
T Consensus       223 ~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g----------~~~~A~~~~~~al~l~p  271 (323)
T d1fcha_         223 EEAVAAYRRAL-ELQPGYIRSRYNLGISCINLG----------AHREAVEHFLEALNMQR  271 (323)
T ss_dssp             HHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHH-HHhhccHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCC
Confidence            88888888888 778888888888887777766          36788888888887543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-12  Score=132.89  Aligned_cols=240  Identities=14%  Similarity=0.063  Sum_probs=169.2

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....|...|+++++.+|.+...|...+..+...| ...+...|.+++...|+++..|...+.... ..|+++.|...+++
T Consensus        34 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~  112 (323)
T d1fcha_          34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT-NESLQRQACEILRD  112 (323)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc-ccccccccccchhh
Confidence            3678999999999999999999999999888877 578999999999999999999999999886 68899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      ++...|....++...........         ++..                        ..                  
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~------------------------~~------------------  141 (323)
T d1fcha_         113 WLRYTPAYAHLVTPAEEGAGGAG---------LGPS------------------------KR------------------  141 (323)
T ss_dssp             HHHTSTTTGGGCC------------------------------------------------C------------------
T ss_pred             HHHhccchHHHHHhhhhhhhhcc---------cccc------------------------hh------------------
Confidence            99999986443322111100000         0000                        00                  


Q ss_pred             hhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC--hhhHHHHHHHhc
Q 005817          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD--PKYWDWLARLKM  375 (676)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~--~~~w~~la~~~~  375 (676)
                       ........+....|...|.++                                     +...|++  +.+|..+|..+.
T Consensus       142 -~~~~~~~~~~~~~a~~~~~~a-------------------------------------l~~~p~~~~~~~~~~l~~~~~  183 (323)
T d1fcha_         142 -ILGSLLSDSLFLEVKELFLAA-------------------------------------VRLDPTSIDPDVQCGLGVLFN  183 (323)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHH-------------------------------------HHHSTTSCCHHHHHHHHHHHH
T ss_pred             -hHHHHHHhhHHHHHHHHHHHH-------------------------------------HHHhhcccccccchhhHHHHH
Confidence             000000112233344444444                                     4444443  334555666554


Q ss_pred             cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHH
Q 005817          376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA  454 (676)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~a  454 (676)
                      .             .++++.|+..|++++...|... .|.........                  .|.+++|...|+++
T Consensus       184 ~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~a  232 (323)
T d1fcha_         184 L-------------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN------------------GNQSEEAVAAYRRA  232 (323)
T ss_dssp             H-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHH
T ss_pred             H-------------HHHHhhhhcccccccccccccccchhhhhhcccc------------------cccchhHHHHHHHH
Confidence            4             4678899999999998877643 45443333332                  36789999999999


Q ss_pred             HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHH
Q 005817          455 EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW  500 (676)
Q Consensus       455 l~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW  500 (676)
                      +..+|.++..|...+..+.+.|++++|+..|++|+ ...|++...+
T Consensus       233 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~  277 (323)
T d1fcha_         233 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL-NMQRKSRGPR  277 (323)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHTC----
T ss_pred             HHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCcChhhh
Confidence            99999999999999999999999999999999999 7777765443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.9e-09  Score=108.42  Aligned_cols=211  Identities=9%  Similarity=0.072  Sum_probs=148.8

Q ss_pred             CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005817          154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY  232 (676)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y  232 (676)
                      .|+..+++..+.....+.+ +.+|..++++|+.++|.+...|..-+......+++++.|...++++++.+|++..+|...
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            3444455544444444444 578999999999999999999988887765444578999999999999999999988887


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHH
Q 005817          233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL  312 (676)
Q Consensus       233 ~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (676)
                      ..+....                                                                   ++++.|
T Consensus       119 ~~~~~~l-------------------------------------------------------------------~~~~eA  131 (315)
T d2h6fa1         119 RVLVEWL-------------------------------------------------------------------RDPSQE  131 (315)
T ss_dssp             HHHHHHH-------------------------------------------------------------------TCCTTH
T ss_pred             hHHHHhh-------------------------------------------------------------------ccHHHH
Confidence            7554321                                                                   134567


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhH
Q 005817          313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ  392 (676)
Q Consensus       313 ~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~  392 (676)
                      ...|++|++..|++...|.....++..++   ..+.+...++++++.+|.+..+|..++.........       ...+.
T Consensus       132 l~~~~kal~~dp~n~~a~~~~~~~~~~~~---~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~-------~~~~~  201 (315)
T d2h6fa1         132 LEFIADILNQDAKNYHAWQHRQWVIQEFK---LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY-------NDRAV  201 (315)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS-------CSHHH
T ss_pred             HHHHhhhhhhhhcchHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc-------chhhh
Confidence            88999999999999888887766666654   456788889999999999999998887664332111       11466


Q ss_pred             HHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC
Q 005817          393 MQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL  460 (676)
Q Consensus       393 ~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~  460 (676)
                      +++|...|.++++..|.+. .|. |+......                  .....+...+++++...|.
T Consensus       202 ~~~ai~~~~~al~~~P~~~~~~~-~l~~ll~~------------------~~~~~~~~~~~~~~~l~~~  251 (315)
T d2h6fa1         202 LEREVQYTLEMIKLVPHNESAWN-YLKGILQD------------------RGLSKYPNLLNQLLDLQPS  251 (315)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHH-HHHHHHTT------------------TCGGGCHHHHHHHHHHTTT
T ss_pred             hHHhHHHHHHHHHhCCCchHHHH-HHHHHHHh------------------cChHHHHHHHHHHHHhCCC
Confidence            8889999999999888755 553 33322221                  1134455667777766554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.5e-09  Score=109.34  Aligned_cols=188  Identities=10%  Similarity=0.077  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ..+|..+|++|+..+|.+...|..-...+...+  .+.+...+++++..+|+++.+|...+.... ..|+++.|...|.+
T Consensus        59 ~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~k  137 (315)
T d2h6fa1          59 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIAD  137 (315)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhh
Confidence            478999999999999999999999888877765  368899999999999999999999988774 68899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817          218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES  297 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (676)
                      +++..|.+..+|...+.+....                                                          
T Consensus       138 al~~dp~n~~a~~~~~~~~~~~----------------------------------------------------------  159 (315)
T d2h6fa1         138 ILNQDAKNYHAWQHRQWVIQEF----------------------------------------------------------  159 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHH----------------------------------------------------------
T ss_pred             hhhhhhcchHHHHHHHHHHHHH----------------------------------------------------------
Confidence            9999999999999877654332                                                          


Q ss_pred             hhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccc---CcHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 005817          298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLA---QSDDMHDKILSDMQRDFLVDPKYWDWLARLK  374 (676)
Q Consensus       298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~---~~~~~a~~il~~~~~~~p~~~~~w~~la~~~  374 (676)
                               +.++.|...|++|++..|.+...|.....++......   ...+.+...+.+++...|+++.+|..++.+.
T Consensus       160 ---------~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll  230 (315)
T d2h6fa1         160 ---------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL  230 (315)
T ss_dssp             ---------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ---------HhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence                     1345678899999999999988887655555443311   1245677788999999999999999888775


Q ss_pred             ccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc
Q 005817          375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS  409 (676)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~  409 (676)
                      ..              ..++++...++.+++..|.
T Consensus       231 ~~--------------~~~~~~~~~~~~~~~l~~~  251 (315)
T d2h6fa1         231 QD--------------RGLSKYPNLLNQLLDLQPS  251 (315)
T ss_dssp             TT--------------TCGGGCHHHHHHHHHHTTT
T ss_pred             Hh--------------cChHHHHHHHHHHHHhCCC
Confidence            32              1245566777777776664

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=5.3e-11  Score=121.16  Aligned_cols=258  Identities=10%  Similarity=-0.083  Sum_probs=167.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCCH
Q 005817          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH-NLNV  208 (676)
Q Consensus       141 ~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~-~~~~  208 (676)
                      ..|..+|++++...|++...|.....++...+           ...+...|++++..+|+++.+|...+...... .++.
T Consensus        46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~  125 (334)
T d1dcea1          46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence            57888999999999999999976665554321           23567788899999999999998877655322 2468


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCC
Q 005817          209 TAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTD  288 (676)
Q Consensus       209 ~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (676)
                      +.|...+++++..+|.+...|......-...                                                 
T Consensus       126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  156 (334)
T d1dcea1         126 ARELELCARFLEADERNFHCWDYRRFVAAQA-------------------------------------------------  156 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------------------------------------------------
T ss_pred             HHHHHHHHHHHhhCchhhhhhhhHHHHHHHh-------------------------------------------------
Confidence            8899999999999888776664322111100                                                 


Q ss_pred             CCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHH
Q 005817          289 GSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWD  368 (676)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~  368 (676)
                                       .+..+.|...++++++..|.+...|..+-.++...+.   .+.+...+..++..+|.+...+.
T Consensus       157 -----------------~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~  216 (334)
T d1dcea1         157 -----------------AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP---QPDSGPQGRLPENVLLKELELVQ  216 (334)
T ss_dssp             -----------------CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC---CCCSSSCCSSCHHHHHHHHHHHH
T ss_pred             -----------------ccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHhHHhHHHHHHHHH
Confidence                             0134667888888888888887777766555544331   11122222222222222222222


Q ss_pred             HHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHH
Q 005817          369 WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS  445 (676)
Q Consensus       369 ~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  445 (676)
                      .+...                 +..+.+...|.+++...|+..   ....++.                    ...+...
T Consensus       217 ~~~~l-----------------~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~--------------------~~~~~~~  259 (334)
T d1dcea1         217 NAFFT-----------------DPNDQSAWFYHRWLLGRAEPLFRCELSVEKS--------------------TVLQSEL  259 (334)
T ss_dssp             HHHHH-----------------CSSCSHHHHHHHHHHSCCCCSSSCCCCHHHH--------------------HHHHHHH
T ss_pred             HHHHh-----------------cchhHHHHHHHHHHHhCcchhhHHHHHHHHH--------------------HHHhhHH
Confidence            22111                 112335556666665554322   1111110                    0135677


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817          446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS  505 (676)
Q Consensus       446 ~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~  505 (676)
                      .+...+.+++..+|.+...|...+..+...|++++|.+.+++++ ...|.....|.....
T Consensus       260 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai-~ldP~~~~y~~~L~~  318 (334)
T d1dcea1         260 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK-AVDPMRAAYLDDLRS  318 (334)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH-HHCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCcccHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999 899998888886643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=1.6e-10  Score=117.46  Aligned_cols=261  Identities=10%  Similarity=-0.038  Sum_probs=182.4

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--h-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD--H-------NLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL  243 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~--~-------~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~  243 (676)
                      .+++..++++++..+|+++.+|.........  .       .|.+..|...++++++.+|.+..+|..........    
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~----  120 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----  120 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC----
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh----
Confidence            3689999999999999999999765554321  1       13478899999999999999999998776543221    


Q ss_pred             HHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC
Q 005817          244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL  323 (676)
Q Consensus       244 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~  323 (676)
                             +                                                      .++.+.|...++++++..
T Consensus       121 -------~------------------------------------------------------~~~~~~a~~~~~~al~~~  139 (334)
T d1dcea1         121 -------P------------------------------------------------------EPNWARELELCARFLEAD  139 (334)
T ss_dssp             -------S------------------------------------------------------SCCHHHHHHHHHHHHHHC
T ss_pred             -------c------------------------------------------------------cccHHHHHHHHHHHHhhC
Confidence                   0                                                      014567889999999998


Q ss_pred             CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHH
Q 005817          324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEA  403 (676)
Q Consensus       324 p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~a  403 (676)
                      |.+...|..........  .+..+.+...++.++..+|.+..+|..++..+...+.             ++.|...+.++
T Consensus       140 ~~~~~~~~~~~~~~~~~--~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~-------------~~~A~~~~~~~  204 (334)
T d1dcea1         140 ERNFHCWDYRRFVAAQA--AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP-------------QPDSGPQGRLP  204 (334)
T ss_dssp             TTCHHHHHHHHHHHHHT--CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC-------------CCCSSSCCSSC
T ss_pred             chhhhhhhhHHHHHHHh--ccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-------------HHHHHHHHHHh
Confidence            88777664332222221  2346788899999999999999999999988765322             22222222222


Q ss_pred             hhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005817          404 LKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR  482 (676)
Q Consensus       404 l~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~  482 (676)
                      ++..|... .+..+    ..                  .+..+.+...|.+++..+|.....+...+..+...++.++|.
T Consensus       205 ~~~~~~~~~~~~~~----~~------------------l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         205 ENVLLKELELVQNA----FF------------------TDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             HHHHHHHHHHHHHH----HH------------------HCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHH----HH------------------hcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence            22211110 11111    11                  011234667788888888887777777777777888999999


Q ss_pred             HHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005817          483 KLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLM  548 (676)
Q Consensus       483 ~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~  548 (676)
                      ..+.+++ ...|.+...|...+......|          +.+++.+.|++|+..-|..  ...|..
T Consensus       263 ~~~~~~~-~~~p~~~~~~~~l~~~~~~~~----------~~~eA~~~~~~ai~ldP~~--~~y~~~  315 (334)
T d1dcea1         263 KELQELE-PENKWCLLTIILLMRALDPLL----------YEKETLQYFSTLKAVDPMR--AAYLDD  315 (334)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHHCTGG----------GHHHHHHHHHHHHHHCGGG--HHHHHH
T ss_pred             HHHHHHH-hhCchHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHCccc--HHHHHH
Confidence            9999999 899999999999998887665          4799999999999876632  335553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=4.1e-09  Score=102.14  Aligned_cols=237  Identities=13%  Similarity=-0.013  Sum_probs=151.4

Q ss_pred             hhHHHHHHHHHHHHhhccCc-hh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPS-SM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR  467 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~-~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~  467 (676)
                      ..+.+.+...+++++...+. .. .-..|  +......             ...|.++.|...|++|+..+|.++..|..
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~--~~~G~~y-------------~~~g~~~~A~~~~~~al~l~p~~~~a~~~   76 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLL--YERGVLY-------------DSLGLRALARNDFSQALAIRPDMPEVFNY   76 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHH--HHHHHHH-------------HHTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHH--HHHHHHH-------------HHCCCHHHHHHHHHHhhccCCCCHHHHhh
Confidence            35677788888999876542 11 11111  1111110             12477999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHH
Q 005817          468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL  547 (676)
Q Consensus       468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~  547 (676)
                      .+..+...|++++|+..+++++ +..|++...|...+.+....|          +.+++.+.|+++++..|......+|.
T Consensus        77 lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~~  145 (259)
T d1xnfa_          77 LGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGIALYYGG----------RDKLAQDDLLAFYQDDPNDPFRSLWL  145 (259)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hchHHHHHHHHHHhhhhhhHHH-HHHhhhhhhHHHHHHHHHHHh----------hHHHHHHHHHHHHhhccccHHHHHHH
Confidence            9999999999999999999999 899999999999988887766          47889999999999877654444454


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHH----hcCHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005817          548 MALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ----KDGIQQAREMYKRFLALPRPGLVLYQNCIE  623 (676)
Q Consensus       548 ~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~----~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~  623 (676)
                      .... ...........+........+.       .+....+.+...    .+..+.+...+...+...|.....|.....
T Consensus       146 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~  217 (259)
T d1xnfa_         146 YLAE-QKLDEKQAKEVLKQHFEKSDKE-------QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK  217 (259)
T ss_dssp             HHHH-HHHCHHHHHHHHHHHHHHSCCC-------STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHhhhHHHHHHHHHHhhccchh-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHH
Confidence            3221 1111111111222222112111       222122222211    222333333333333333333445555556


Q ss_pred             HHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhh
Q 005817          624 LENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETK  667 (676)
Q Consensus       624 lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~  667 (676)
                      +....|      +.+.|.+.|++|+..+|.+ -++..++.+|..
T Consensus       218 ~~~~~g------~~~~A~~~~~~al~~~p~~-~~~~~~a~~~L~  254 (259)
T d1xnfa_         218 YYLSLG------DLDSATALFKLAVANNVHN-FVEHRYALLELS  254 (259)
T ss_dssp             HHHHTT------CHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHH
T ss_pred             HHHHCC------CHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence            666667      8999999999999998854 466678777764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.6e-08  Score=97.92  Aligned_cols=88  Identities=9%  Similarity=-0.080  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|...|++|+...|++...|...+......| .+.+...|++++..+|+++..|...+.... ..|+.+.|...|+++
T Consensus        53 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a  131 (259)
T d1xnfa_          53 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAF  131 (259)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence            578899999999999999999999999888887 578999999999999999999999998876 688999999999999


Q ss_pred             HHhCCCCHHH
Q 005817          219 LRVCPTSEEL  228 (676)
Q Consensus       219 l~~~p~~~~l  228 (676)
                      ++..|.+...
T Consensus       132 l~~~p~~~~~  141 (259)
T d1xnfa_         132 YQDDPNDPFR  141 (259)
T ss_dssp             HHHCTTCHHH
T ss_pred             HhhccccHHH
Confidence            9999987654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.9e-07  Score=78.47  Aligned_cols=98  Identities=13%  Similarity=0.052  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....|...|.+++...|.+..+|...+......| +..+...|.+++...|+++..|...+.... ..|+++.|...|++
T Consensus        18 ~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~-~~~~~~~A~~~~~~   96 (117)
T d1elwa_          18 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRTYEE   96 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH-HccCHHHHHHHHHH
Confidence            3678999999999999999999999999988877 578999999999999999999999999885 78899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHH
Q 005817          218 GLRVCPTSEELWVEYLRMEL  237 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e~  237 (676)
                      +++..|+++.+|..+.+++.
T Consensus        97 a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          97 GLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999887753

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=6.6e-07  Score=74.99  Aligned_cols=99  Identities=15%  Similarity=0.052  Sum_probs=86.2

Q ss_pred             hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~  468 (676)
                      .+++++|...|+++|+..|+.. .|.........                  .|+++.|...|++++..+|.++..|...
T Consensus        16 ~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~   77 (117)
T d1elwa_          16 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK------------------KGDYQKAYEDGCKTVDLKPDWGKGYSRK   77 (117)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcchhhhhcccccccc------------------cccccccchhhhhHHHhccchhhHHHHH
Confidence            4789999999999999998765 55554443333                  4778999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (676)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (676)
                      +..+...|++++|...+++++ +..|+++.+|..+..+.
T Consensus        78 g~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          78 AAALEFLNRFEEAKRTYEEGL-KHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-TTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHh
Confidence            999999999999999999999 89999999998877654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.1e-06  Score=76.14  Aligned_cols=97  Identities=12%  Similarity=0.044  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....|...|++++..+|++...|..++..+...| ...+...|+++++.+|.++..|...+.... ..|+++.|...|++
T Consensus        25 ~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~-~~g~~~eA~~~~~~  103 (159)
T d1a17a_          25 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYET  103 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred             CHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence            3678999999999999999999999999999888 578999999999999999999999999886 68899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHH
Q 005817          218 GLRVCPTSEELWVEYLRME  236 (676)
Q Consensus       218 al~~~p~~~~lW~~y~~~e  236 (676)
                      +++..|+++.++..+.+..
T Consensus       104 a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_         104 VVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHHSTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHH
Confidence            9999999999888876653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7.7e-06  Score=68.72  Aligned_cols=92  Identities=10%  Similarity=0.018  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCCHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFHPKV--PGVWIYAAAWEFDHNLNVTAAR  212 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~P~~--~~lW~~~a~~e~~~~~~~~~Ar  212 (676)
                      ...+|...|++++...|.+......|+..+.+.+    ..++..+|++++...|..  ...|...+.... ..|+++.|+
T Consensus        14 ~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~-~~g~~~~A~   92 (122)
T d1nzna_          14 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKAL   92 (122)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-HHhhhHHHH
Confidence            4678899999999999999999999999987644    246899999999998864  357888887775 689999999


Q ss_pred             HHHHHHHHhCCCCHHHHHH
Q 005817          213 ALMQNGLRVCPTSEELWVE  231 (676)
Q Consensus       213 ~~~~ral~~~p~~~~lW~~  231 (676)
                      ..|+++|+..|++.+....
T Consensus        93 ~~~~~aL~~~P~~~~A~~l  111 (122)
T d1nzna_          93 KYVRGLLQTEPQNNQAKEL  111 (122)
T ss_dssp             HHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhCcCCHHHHHH
Confidence            9999999999998765533

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=0.0004  Score=68.17  Aligned_cols=270  Identities=9%  Similarity=-0.065  Sum_probs=155.0

Q ss_pred             HHHHHHHcc-CchHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHH
Q 005817          164 YMEFCRQRK-NGRMKKVLAQVIRFHPKVPG-----VWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEEL---WVEYLR  234 (676)
Q Consensus       164 y~~~~~~~~-~~~~~~~~~ral~~~P~~~~-----lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~l---W~~y~~  234 (676)
                      .++.....| ++.+...|++++...|.++.     ++...+.... ..|+++.|...|++++...|.....   ...+..
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            355555556 57899999999999998643     4444455554 5789999999999999876643211   111111


Q ss_pred             HHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHH
Q 005817          235 MELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQT  314 (676)
Q Consensus       235 ~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  314 (676)
                      +...+.                                                                ..+++..+..
T Consensus        97 ~~~~~~----------------------------------------------------------------~~~~~~~a~~  112 (366)
T d1hz4a_          97 QSEILF----------------------------------------------------------------AQGFLQTAWE  112 (366)
T ss_dssp             HHHHHH----------------------------------------------------------------HTTCHHHHHH
T ss_pred             HHHHHH----------------------------------------------------------------HHHHHHHHHH
Confidence            111000                                                                0123344555


Q ss_pred             HHHHHHhcC-----CCchh---HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhh-----HHHHHHHhccccCCC
Q 005817          315 IYSGAVEAL-----PSSFN---LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKY-----WDWLARLKMTDSVSK  381 (676)
Q Consensus       315 iy~~Al~~~-----p~~~~---~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~-----w~~la~~~~~~~~~~  381 (676)
                      .|..++...     +....   ....+-.++..   .+..+.+...+..+....+.....     ....+..+..     
T Consensus       113 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  184 (366)
T d1hz4a_         113 TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA---WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA-----  184 (366)
T ss_dssp             HHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH---hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh-----
Confidence            555555421     11111   11111111111   134566777777777766554322     2223333322     


Q ss_pred             CCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC
Q 005817          382 DGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG  458 (676)
Q Consensus       382 ~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~  458 (676)
                              .+....+...+.++.......   .-+...+......+.             ...+..+.|...+++++...
T Consensus       185 --------~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~a~~~~~~~~~~~  243 (366)
T d1hz4a_         185 --------RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW-------------QMTGDKAAAANWLRHTAKPE  243 (366)
T ss_dssp             --------HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHSCCCC
T ss_pred             --------hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHH-------------HhcccHHHHHHHHHHHHHhc
Confidence                    345667777777776543321   111111111111110             01366889999999998775


Q ss_pred             CCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----ccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHH
Q 005817          459 CLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCS-----GKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFEL  529 (676)
Q Consensus       459 p~~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~-----~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~  529 (676)
                      +.+    ...+...+..+...|++++|...+++++.     ...|.....|...+.++...|          +.+++.+.
T Consensus       244 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~  313 (366)
T d1hz4a_         244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG----------RKSDAQRV  313 (366)
T ss_dssp             CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------CHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC----------CHHHHHHH
Confidence            543    44566678889999999999999999872     123445677888888887776          47889999


Q ss_pred             HHHHHhhc
Q 005817          530 LKCILTKV  537 (676)
Q Consensus       530 f~~Al~~~  537 (676)
                      |++|+...
T Consensus       314 l~~Al~l~  321 (366)
T d1hz4a_         314 LLDALKLA  321 (366)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.1e-05  Score=69.36  Aligned_cols=89  Identities=8%  Similarity=-0.031  Sum_probs=82.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      .|+++.|...|++++..+|.++..|..++..+...|++++|...+++++ +..|++...|..++......|         
T Consensus        23 ~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal-~~~p~~~~a~~~~g~~~~~~g---------   92 (159)
T d1a17a_          23 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALG---------   92 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT---------
T ss_pred             cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHH-HHcccchHHHHHHHHHHHHcC---------
Confidence            3779999999999999999999999999999999999999999999999 899999999999999888776         


Q ss_pred             hchHHHHHHHHHHHhhcChh
Q 005817          521 ADILSIFELLKCILTKVSAL  540 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~~~~  540 (676)
                       +.+++.+.|++++...|..
T Consensus        93 -~~~eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          93 -KFRAALRDYETVVKVKPHD  111 (159)
T ss_dssp             -CHHHHHHHHHHHHHHSTTC
T ss_pred             -CHHHHHHHHHHHHHcCCCC
Confidence             4899999999999877644

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.10  E-value=8.4e-06  Score=67.38  Aligned_cols=83  Identities=7%  Similarity=-0.140  Sum_probs=75.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      .|+++.|...|++++..+|.++..|...+..+.+.|++++|...+++++ +..|.+...|..++......|         
T Consensus        29 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~~~la~~y~~~g---------   98 (112)
T d1hxia_          29 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR-MLDPKDIAVHAALAVSHTNEH---------   98 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHH---------
T ss_pred             HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccc-ccccccccchHHHHHHHHHCC---------
Confidence            4779999999999999999999999999999999999999999999999 899999999999998888776         


Q ss_pred             hchHHHHHHHHHHH
Q 005817          521 ADILSIFELLKCIL  534 (676)
Q Consensus       521 ~~~~~~~~~f~~Al  534 (676)
                       +.+++.+.|++.|
T Consensus        99 -~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 -NANAALASLRAWL  111 (112)
T ss_dssp             -HHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHh
Confidence             4777877777765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=9.5e-06  Score=74.29  Aligned_cols=87  Identities=10%  Similarity=0.018  Sum_probs=81.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      .|+++.|...|++|+..+|.++.+|...+..+.+.|++++|+..+++|+ +..|+++..|..++.+....|         
T Consensus        17 ~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al-~l~p~~~~a~~~lg~~~~~l~---------   86 (201)
T d2c2la1          17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL-ELDGQSVKAHFFLGQCQLEME---------   86 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCTTCHHHHHHHHHHHHHTT---------
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH-HhCCCcHHHHHHHHHHHHHCC---------
Confidence            4789999999999999999999999999999999999999999999999 899999999999999998877         


Q ss_pred             hchHHHHHHHHHHHhhcC
Q 005817          521 ADILSIFELLKCILTKVS  538 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~~  538 (676)
                       +.+++...|++|+...|
T Consensus        87 -~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          87 -SYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             -CHHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHhCc
Confidence             47999999999998654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=0.00063  Score=66.70  Aligned_cols=226  Identities=11%  Similarity=-0.017  Sum_probs=127.5

Q ss_pred             hhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC-----CC
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG-----CL  460 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~-----p~  460 (676)
                      .|++++|...|+++++..+...    ....+........               ..+++..+...+.+++...     +.
T Consensus        64 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~al~~~~~~~~~~  128 (366)
T d1hz4a_          64 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF---------------AQGFLQTAWETQEKAFQLINEQHLEQ  128 (366)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhHhcccch
Confidence            5789999999999997643211    1111111111111               1356778888888777531     11


Q ss_pred             ---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh-----HHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHH
Q 005817          461 ---TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS-----VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC  532 (676)
Q Consensus       461 ---~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~-----~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~  532 (676)
                         ....+...+..+...|+++.|...+.+++ ...+..     ..............+          +...+...+.+
T Consensus       129 ~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~a~~~~~~  197 (366)
T d1hz4a_         129 LPMHEFLVRIRAQLLWAWARLDEAEASARSGI-EVLSSYQPQQQLQCLAMLIQCSLARG----------DLDNARSQLNR  197 (366)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTSCGGGGHHHHHHHHHHHHHHT----------CHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHhhh----------hHHHHHHHHHH
Confidence               23456667888889999999999999998 544432     222222223333333          35666666676


Q ss_pred             HHhhcCh-----hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHH---HHHHHHHhcCHHHHHH
Q 005817          533 ILTKVSA-----LESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSA---IINLVIQKDGIQQARE  602 (676)
Q Consensus       533 Al~~~~~-----~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---y~~~~~~~g~~~~Ar~  602 (676)
                      +......     .....++......+...+  +.+...++.+.. ..+..    .......   .+......|++++|..
T Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~  272 (366)
T d1hz4a_         198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK-PEFAN----NHFLQGQWRNIARAQILLGEFEPAEI  272 (366)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC-CCCTT----CGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hcccc----chHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            6653211     112223332222222222  223333343221 11111    1111112   2445677899999999


Q ss_pred             HHHHHHcC------CCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          603 MYKRFLAL------PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       603 iy~~al~~------~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      .+++++..      +|.....+.....+...+|      +.+.|...|++|++..+
T Consensus       273 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         273 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAG------RKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHhh
Confidence            99999742      2333446666667777777      89999999999999754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.00  E-value=1.2e-05  Score=66.45  Aligned_cols=79  Identities=18%  Similarity=0.087  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG  218 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra  218 (676)
                      ...|...|++++..+|.+...|...+......+ ...+...|+++++.+|.++..|+..+.... ..|+.+.|...|+|+
T Consensus        32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~-~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH-HCCCHHHHHHHHHHH
Confidence            456777777777777777777777777766665 466777777777777777777777777765 566777777777776


Q ss_pred             H
Q 005817          219 L  219 (676)
Q Consensus       219 l  219 (676)
                      |
T Consensus       111 l  111 (112)
T d1hxia_         111 L  111 (112)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=7.5e-06  Score=75.00  Aligned_cols=87  Identities=7%  Similarity=-0.013  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN  217 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r  217 (676)
                      ....|...|++|+...|.+..+|...+....+.| +..|...|.+|+.+.|+++..|...+.... ..|+++.|...|++
T Consensus        19 ~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~-~l~~~~~A~~~~~~   97 (201)
T d2c2la1          19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL-EMESYDEAIANLQR   97 (201)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence            3678999999999999999999999999988887 589999999999999999999999999986 78899999999999


Q ss_pred             HHHhCCCCH
Q 005817          218 GLRVCPTSE  226 (676)
Q Consensus       218 al~~~p~~~  226 (676)
                      |+...|+..
T Consensus        98 al~l~p~~~  106 (201)
T d2c2la1          98 AYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHhCcccH
Confidence            999888543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=0.00014  Score=64.67  Aligned_cols=99  Identities=9%  Similarity=0.001  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIE---------------LWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF  202 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~---------------lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~  202 (676)
                      ....|...|++|+..+|....               ++...+..+.+.| +..+...+++++.++|+++..|...+....
T Consensus        28 ~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  107 (170)
T d1p5qa1          28 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL  107 (170)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHH
Confidence            357789999999999997642               3333444444555 578999999999999999999999999886


Q ss_pred             HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817          203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELT  238 (676)
Q Consensus       203 ~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~  238 (676)
                       ..|+++.|...|++++...|+++.+...+..+...
T Consensus       108 -~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1         108 -AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             -HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             -HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence             78999999999999999999999988887776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.89  E-value=5.7e-05  Score=65.37  Aligned_cols=96  Identities=8%  Similarity=-0.054  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH---  204 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~---  204 (676)
                      ....|...|++|+...|++.+.|..+...+...+           .+.+...|++|+.++|+++..|...+....+.   
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~   91 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL   91 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccc
Confidence            4678999999999999999999999998875431           24689999999999999999998888765421   


Q ss_pred             -------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817          205 -------NLNVTAARALMQNGLRVCPTSEELWVEYLR  234 (676)
Q Consensus       205 -------~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~  234 (676)
                             .+++..|...|++++...|++...+..+..
T Consensus        92 ~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          92 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  128 (145)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHH
Confidence                   124688999999999999998665544443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=9.7e-05  Score=65.75  Aligned_cols=112  Identities=11%  Similarity=-0.014  Sum_probs=80.8

Q ss_pred             hhHHHHHHHHHHHHhhccCchh-----HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM-----IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI  464 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~-----lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~l  464 (676)
                      .++++.|+..|++|+...|...     .+.....+....+.. .      ++.....+.+++|...+++++..+|.++..
T Consensus        26 ~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~n-l------a~~y~k~~~~~~A~~~~~~al~~~p~~~~a   98 (170)
T d1p5qa1          26 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN-L------AMCHLKLQAFSAAIESCNKALELDSNNEKG   98 (170)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH-H------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHH-H------HHHHHhhhhcccccchhhhhhhccccchhh
Confidence            4789999999999998876421     111111111100000 0      000112477999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 005817          465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR  509 (676)
Q Consensus       465 w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~  509 (676)
                      |...+..+...|++++|+..|++++ +..|+++.+...+..+...
T Consensus        99 ~~~~g~~~~~~g~~~~A~~~~~~al-~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          99 LSRRGEAHLAVNDFELARADFQKVL-QLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHCSSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999 8999998887776655443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.79  E-value=0.00014  Score=63.47  Aligned_cols=97  Identities=8%  Similarity=0.020  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDI----------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWE  201 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~----------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e  201 (676)
                      ....|...|++|+..+|...                .++...+....+.+ +..+...++++|..+|+++..|...+...
T Consensus        32 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~  111 (153)
T d2fbna1          32 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN  111 (153)
T ss_dssp             CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHH
Confidence            35678899999998877543                23333444444555 57899999999999999999999999988


Q ss_pred             HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817          202 FDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME  236 (676)
Q Consensus       202 ~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e  236 (676)
                      . ..|+++.|+..|+++++++|++..++..+..+.
T Consensus       112 ~-~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1         112 M-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             H-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             H-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            6 678999999999999999999999887766543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.1e-05  Score=81.04  Aligned_cols=69  Identities=7%  Similarity=-0.150  Sum_probs=58.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC  510 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~  510 (676)
                      .+.++.|+..|++|+..+|.++..|...+.++...|+..+|...|.+|+ ...|+.+..+.....+..+.
T Consensus       165 ~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral-~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI-AVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH-SSSBCCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHh
Confidence            3668899999999999999999999999999999999999999999999 77777777777776665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=9.5e-05  Score=61.74  Aligned_cols=89  Identities=10%  Similarity=0.089  Sum_probs=74.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCCh--HHHHHHHHHHHHHhccccC
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK---LDEARKLAAKLCSGKLSDS--VQLWLLRISVEIRCVTRNS  515 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~---~~~A~~l~~~al~~~~P~~--~~lW~~~i~l~~~~~~~~~  515 (676)
                      .+++++|.+.|++++..+|.+++.+..|+..+.+.++   +++|+.++++++ ...|.+  ...|...+..+.+.|    
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l-~~~~~~~~~~~~~~Lg~~y~~~g----   86 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLK----   86 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHHHh----
Confidence            4678999999999999999999999999999987554   557999999999 766654  457877777777766    


Q ss_pred             CCCChhchHHHHHHHHHHHhhcChh
Q 005817          516 FSPSKADILSIFELLKCILTKVSAL  540 (676)
Q Consensus       516 ~~p~~~~~~~~~~~f~~Al~~~~~~  540 (676)
                            +.+++.+.|+++|..-|..
T Consensus        87 ------~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          87 ------EYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             ------CHHHHHHHHHHHHHHCTTC
T ss_pred             ------hhHHHHHHHHHHHHhCcCC
Confidence                  4899999999999977754

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.74  E-value=0.00018  Score=63.78  Aligned_cols=104  Identities=11%  Similarity=0.061  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHHHhhccCchh-------------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM-------------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA  456 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~-------------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~  456 (676)
                      .+++..|+..|++|+..++...             ....|.+...-.               ...+.++.|...+++++.
T Consensus        28 ~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~---------------~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          28 GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY---------------LKLREYTKAVECCDKALG   92 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHH---------------HHhhhcccchhhhhhhhh
Confidence            4678999999999998654311             112222221111               124779999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 005817          457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR  509 (676)
Q Consensus       457 ~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~  509 (676)
                      .+|.+...|...+..+...|++++|...+++++ ...|++..++..+..+...
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al-~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL-EVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSCTTCHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999 8999999888877655543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.58  E-value=0.0007  Score=59.74  Aligned_cols=99  Identities=6%  Similarity=0.025  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIE---------------LWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF  202 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~---------------lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~  202 (676)
                      ....|...|.+|+...|....               ++...+....+.+ +..+...+++++.++|+++..|...+....
T Consensus        30 ~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~  109 (168)
T d1kt1a1          30 KYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL  109 (168)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHH
Confidence            356788999999987766542               1222222233445 578999999999999999999999999886


Q ss_pred             HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817          203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELT  238 (676)
Q Consensus       203 ~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~  238 (676)
                       ..|+++.|...|++++...|++..++..+..+...
T Consensus       110 -~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1         110 -LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             -HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             -HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence             78899999999999999999999998888777544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.56  E-value=0.00036  Score=61.69  Aligned_cols=84  Identities=8%  Similarity=-0.026  Sum_probs=70.3

Q ss_pred             CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005817          154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY  232 (676)
Q Consensus       154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y  232 (676)
                      .|....+|...+....+.| +..|...|.++|.++|+++..|...+.... ..|+++.|...|+++++..|++..+...+
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~-~l~~~~~A~~~~~~al~l~p~n~~~~~~l  151 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3455566666666666666 578999999999999999999999999886 67899999999999999999999888887


Q ss_pred             HHHHHH
Q 005817          233 LRMELT  238 (676)
Q Consensus       233 ~~~e~~  238 (676)
                      ..+...
T Consensus       152 ~~~~~~  157 (169)
T d1ihga1         152 LKVKQK  157 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.0011  Score=59.84  Aligned_cols=59  Identities=5%  Similarity=-0.081  Sum_probs=34.4

Q ss_pred             CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817          173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM  235 (676)
Q Consensus       173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~  235 (676)
                      +..+...|.+   ..|.++.+|...+.... ..|+++.|...|++||+.+|++..+|...+..
T Consensus        21 ~~~Al~~~~~---i~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~   79 (192)
T d1hh8a_          21 WKGALDAFSA---VQDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   79 (192)
T ss_dssp             HHHHHHHHHT---SSSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHh---cCCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            3455555543   24445666666666554 45666666666666666666666666555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.001  Score=60.13  Aligned_cols=118  Identities=13%  Similarity=0.004  Sum_probs=88.1

Q ss_pred             hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV  469 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~  469 (676)
                      .++++.|+..|+++..  +...+|........                  ..|++++|...|++|+..+|..+..|...+
T Consensus        18 ~~d~~~Al~~~~~i~~--~~~~~~~nlG~~~~------------------~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g   77 (192)
T d1hh8a_          18 KKDWKGALDAFSAVQD--PHSRICFNIGCMYT------------------ILKNMTEAEKAFTRSINRDKHLAVAYFQRG   77 (192)
T ss_dssp             TTCHHHHHHHHHTSSS--CCHHHHHHHHHHHH------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCC--CCHHHHHHHHHHHH------------------HcCCchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence            4679999999986432  33345532211111                  147799999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhccCCC----------------hHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHH
Q 005817          470 TLYLQLGKLDEARKLAAKLCSGKLSD----------------SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI  533 (676)
Q Consensus       470 ~l~~~~~~~~~A~~l~~~al~~~~P~----------------~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~A  533 (676)
                      ..+.+.|++++|...+++|+ ...|.                ..+++...+......+          +.+++.+.|.+|
T Consensus        78 ~~~~~~g~~~~A~~~~~kAl-~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~----------~~~~A~~~l~~A  146 (192)
T d1hh8a_          78 MLYYQTEKYDLAIKDLKEAL-IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE----------EWKKAEEQLALA  146 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH-HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT----------CHHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHH-HhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCC----------CHHHHHHHHHHH
Confidence            99999999999999999998 54442                2456666666666655          478888888888


Q ss_pred             HhhcC
Q 005817          534 LTKVS  538 (676)
Q Consensus       534 l~~~~  538 (676)
                      +..-|
T Consensus       147 ~~~~~  151 (192)
T d1hh8a_         147 TSMKS  151 (192)
T ss_dssp             HTTCC
T ss_pred             HhcCC
Confidence            87544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.53  E-value=0.00027  Score=60.92  Aligned_cols=99  Identities=9%  Similarity=-0.077  Sum_probs=74.6

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQL----------GKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC  510 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~----------~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~  510 (676)
                      .+.+++|+..|++|+..+|.+++.+..++..+...          +.+++|...+++|+ +..|++...|..........
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl-~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-LIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-HhcchhhHHHhhHHHHHHHc
Confidence            46789999999999999999999999999888643          44678999999999 89999999998888776554


Q ss_pred             ccccCCCC-ChhchHHHHHHHHHHHhhcChh
Q 005817          511 VTRNSFSP-SKADILSIFELLKCILTKVSAL  540 (676)
Q Consensus       511 ~~~~~~~p-~~~~~~~~~~~f~~Al~~~~~~  540 (676)
                      +......+ .....+++.+.|++|+..-|..
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence            32100000 0013567778888888776643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=0.0013  Score=63.58  Aligned_cols=177  Identities=9%  Similarity=-0.028  Sum_probs=108.5

Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC------CChHHHHHHHHHHHHHhccccC
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL------SDSVQLWLLRISVEIRCVTRNS  515 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~------P~~~~lW~~~i~l~~~~~~~~~  515 (676)
                      ..++.|.++|.+|              +.++...|++++|...|.+|+ ..+      |.....|...+.+..+.+    
T Consensus        31 ~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~-~~~~~~~~~~~~a~~~~~~g~~y~~~~----   91 (290)
T d1qqea_          31 YKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSGG----   91 (290)
T ss_dssp             HHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred             ccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHhC----
Confidence            3456666666654              667778899999999999998 532      223456676677766655    


Q ss_pred             CCCChhchHHHHHHHHHHHhhcChh----hhHHHHHHHHHHHHhh-h--HHHHHHHHHHHHhhhhCCCCCCCcch---HH
Q 005817          516 FSPSKADILSIFELLKCILTKVSAL----ESESLWLMALKFFMNQ-K--HYFDKLVEIALISVAKDGGGESGFSL---PS  585 (676)
Q Consensus       516 ~~p~~~~~~~~~~~f~~Al~~~~~~----~~~~lW~~~l~~~~~~-~--~~~~~~~~~a~~~~~~~~~~~~~~~~---~~  585 (676)
                            +.+++.+.|++++...+..    .....+......+... +  +.+...+++|...... .+.  ....   ..
T Consensus        92 ------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~-~~~--~~~~~~~~~  162 (290)
T d1qqea_          92 ------NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ-DQS--VALSNKCFI  162 (290)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTC--HHHHHHHHH
T ss_pred             ------CcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh-cCc--hhhhhhHHH
Confidence                  4788888889888753222    1222333333333222 2  3455556666653322 211  1111   22


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817          586 AIINLVIQKDGIQQAREMYKRFLALPRPGL-------VLYQNCIELENNLASVGDKDSLVNARKLFESALATYD  652 (676)
Q Consensus       586 ~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~-------~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~  652 (676)
                      ..+......|++++|..+|++++...+...       .++...+......+      +...|...|+++++.+|
T Consensus       163 ~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT------DAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT------CHHHHHHHHHGGGCC--
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHhCC
Confidence            345667889999999999999987655442       13333343444455      88999999999999877

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.50  E-value=0.00041  Score=60.30  Aligned_cols=110  Identities=12%  Similarity=0.028  Sum_probs=80.1

Q ss_pred             hhHHHHHHHHHHHHhhccCchh------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSM------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED  463 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~  463 (676)
                      .+++.+|...|++|+...+...      .+..........+....       ......+.++.|...|++|+..+|.+..
T Consensus        30 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla-------~~~~~l~~~~~Al~~~~~al~~~p~~~k  102 (153)
T d2fbna1          30 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA-------TCYNKNKDYPKAIDHASKVLKIDKNNVK  102 (153)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHH-------HHHHHhcccchhhhhhhccccccchhhh
Confidence            4679999999999998765322      22111111111000000       0001246789999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817          464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE  507 (676)
Q Consensus       464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~  507 (676)
                      .|...+..+...|++++|+..+++++ +..|++..++..+..+.
T Consensus       103 a~~~~g~~~~~lg~~~~A~~~~~~al-~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1         103 ALYKLGVANMYFGFLEEAKENLYKAA-SLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999 89999998887765444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=0.0044  Score=59.67  Aligned_cols=193  Identities=9%  Similarity=-0.053  Sum_probs=109.6

Q ss_pred             hhHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh------HHHHHHHHHHHHH
Q 005817          442 HYISHLLTVYEKAEAMG------CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIR  509 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~------p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~  509 (676)
                      +++++|...|++|+...      +.....|...+.++.+.|++++|...+++++ ..++..      ...+...+.....
T Consensus        51 ~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~  129 (290)
T d1qqea_          51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI-QIFTHRGQFRRGANFKFELGEILEN  129 (290)
T ss_dssp             TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh-HHhhhcccchhHHHHHHHHHHhHhh
Confidence            56788888888888752      1224578888999999999999999999998 654432      3444444444433


Q ss_pred             hccccCCCCChhchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcch
Q 005817          510 CVTRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSL  583 (676)
Q Consensus       510 ~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~----~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~  583 (676)
                      ..         ++.+++.+.|++|+...+...    ...++......+...+  +.+...+++++... +..+. .....
T Consensus       130 ~~---------~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~-~~~~~-~~~~~  198 (290)
T d1qqea_         130 DL---------HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS-MGNRL-SQWSL  198 (290)
T ss_dssp             TT---------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-SSCTT-TGGGH
T ss_pred             HH---------HHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC-ccchh-hhhhH
Confidence            21         158999999999987543221    2234444444443333  34555666666532 22211 01122


Q ss_pred             HHHH---HHHHHHhcCHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh
Q 005817          584 PSAI---INLVIQKDGIQQAREMYKRFLALPRPGL-----VLYQNCIELENNLASVGDKDSLVNARKLFESALAT  650 (676)
Q Consensus       584 ~~~y---~~~~~~~g~~~~Ar~iy~~al~~~p~~~-----~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~  650 (676)
                      ...|   +......|+.+.|...+++++...|.-.     .+....+..-.. +   +...++.+-..|+++.+.
T Consensus       199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~-~---d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE-G---DSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT-T---CTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHh-c---CHHHHHHHHHHHHHHhhc
Confidence            2122   2223457999999999999998765422     233444332111 1   122456666666554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00059  Score=57.21  Aligned_cols=88  Identities=9%  Similarity=-0.008  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHH-------HHHHhCCCHHH
Q 005817          139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAA-------WEFDHNLNVTA  210 (676)
Q Consensus       139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~-------~e~~~~~~~~~  210 (676)
                      ....|...|.+++..+|.+..+|...+..+...| +..+...|++++.+.|+++..|...+.       .. ...++++.
T Consensus        19 ~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~-~~~~~~~~   97 (128)
T d1elra_          19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY-FKEEKYKD   97 (128)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH-HHhCCHHH
Confidence            3678999999999999999999999999998887 689999999999999998876666554       33 35689999


Q ss_pred             HHHHHHHHHHhCCCCHHH
Q 005817          211 ARALMQNGLRVCPTSEEL  228 (676)
Q Consensus       211 Ar~~~~ral~~~p~~~~l  228 (676)
                      |...|++++..+|+ +++
T Consensus        98 A~~~~~kal~~~~~-~~~  114 (128)
T d1elra_          98 AIHFYNKSLAEHRT-PDV  114 (128)
T ss_dssp             HHHHHHHHHHHCCC-HHH
T ss_pred             HHHHHHHHHhcCCC-HHH
Confidence            99999999999886 444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00052  Score=57.56  Aligned_cols=94  Identities=12%  Similarity=0.111  Sum_probs=72.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      .+++++|...|++++..+|.++..|...+..+.+.|++++|...+++++ ...|.+...|..++....+.|..-.   ..
T Consensus        17 ~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~l~~~~~~~~~~~a~~~~~lg~~~~---~~   92 (128)
T d1elra_          17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI-EVGRENREDYRQIAKAYARIGNSYF---KE   92 (128)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHSTTCHHHHHHHHHHHHHHHH---HT
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHHHHHHH---Hh
Confidence            4779999999999999999999999999999999999999999999999 7777766555555444433321000   00


Q ss_pred             hchHHHHHHHHHHHhhcC
Q 005817          521 ADILSIFELLKCILTKVS  538 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~~  538 (676)
                      ++++++.+.|++++..-+
T Consensus        93 ~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          93 EKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             TCHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHhcCC
Confidence            147888888888886544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.21  E-value=0.0013  Score=57.96  Aligned_cols=67  Identities=10%  Similarity=-0.073  Sum_probs=60.5

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI  508 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~  508 (676)
                      .+.+++|+..|++|+..+|.++..|...+..+...|++++|+..+++++ +..|++..+...+..+..
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al-~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ-EIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999 899999888777655443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0015  Score=68.51  Aligned_cols=86  Identities=7%  Similarity=-0.070  Sum_probs=64.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817          441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK  520 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~  520 (676)
                      .+..+.|...|.+++..+|  ...+...++++...|++++|+..|.+|+ ...|++...|...+.+....|         
T Consensus       133 ~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~-~l~P~~~~~~~~Lg~~~~~~~---------  200 (497)
T d1ya0a1         133 QTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAA-QLVPSNGQPYNQLAILASSKG---------  200 (497)
T ss_dssp             ----------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTBSHHHHHHHHHHHHTT---------
T ss_pred             CCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHcC---------
Confidence            3556677777777776543  4567888999999999999999999999 899999999999999888766         


Q ss_pred             hchHHHHHHHHHHHhhcCh
Q 005817          521 ADILSIFELLKCILTKVSA  539 (676)
Q Consensus       521 ~~~~~~~~~f~~Al~~~~~  539 (676)
                       +..++...|.+||..-|+
T Consensus       201 -~~~~A~~~y~ral~~~~~  218 (497)
T d1ya0a1         201 -DHLTTIFYYCRSIAVKFP  218 (497)
T ss_dssp             -CHHHHHHHHHHHHSSSBC
T ss_pred             -CHHHHHHHHHHHHhCCCC
Confidence             478888999999986554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.50  E-value=0.0029  Score=60.07  Aligned_cols=64  Identities=8%  Similarity=0.013  Sum_probs=34.4

Q ss_pred             hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHH
Q 005817          442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV  506 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l  506 (676)
                      |+++.|+..|++++..+|.+.+.+..++.++...|++++|...+++++ +..|.+...|..+..+
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~-~l~P~~~~~~~~l~~l   73 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI-KLFPEYLPGASQLRHL   73 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555555555 4555555555444433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0099  Score=46.33  Aligned_cols=74  Identities=12%  Similarity=0.025  Sum_probs=55.3

Q ss_pred             HHHHHHHHcc-CchHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817          163 KYMEFCRQRK-NGRMKKVLAQVIRFHPKV-------PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR  234 (676)
Q Consensus       163 ~y~~~~~~~~-~~~~~~~~~ral~~~P~~-------~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~  234 (676)
                      .....+.+.| +..+...|++|+...|.+       ..++...+.... ..|+++.|...++++|+.+|+++.++..+..
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~   88 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            3444444555 578899999999886654       344555555554 7889999999999999999999998887766


Q ss_pred             HHH
Q 005817          235 MEL  237 (676)
Q Consensus       235 ~e~  237 (676)
                      ++.
T Consensus        89 ~~~   91 (95)
T d1tjca_          89 FEY   91 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.18  E-value=0.0057  Score=57.94  Aligned_cols=40  Identities=18%  Similarity=0.023  Sum_probs=35.2

Q ss_pred             HHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817          472 YLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT  512 (676)
Q Consensus       472 ~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~  512 (676)
                      .++.|++++|+..+++++ +..|.+...+..+++++...|+
T Consensus         6 aL~~G~l~eAl~~l~~al-~~~P~d~~ar~~La~lL~~~G~   45 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAI-KASPKDASLRSSFIELLCIDGD   45 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHH-HTCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCC
Confidence            356799999999999999 8999999999999998887764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0084  Score=46.78  Aligned_cols=74  Identities=8%  Similarity=-0.098  Sum_probs=57.0

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHH
Q 005817          588 INLVIQKDGIQQAREMYKRFLALPRP-------GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRD  660 (676)
Q Consensus       588 ~~~~~~~g~~~~Ar~iy~~al~~~p~-------~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~  660 (676)
                      .....+.|++++|...|++|+...|.       ...++..........|      ++++|.+.|++|++..|+++..+..
T Consensus        12 G~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g------~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_          12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG------DLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC------ChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            34466889999999999999864322       1345555566666777      8999999999999999999999888


Q ss_pred             HHHHHhh
Q 005817          661 YYSTETK  667 (676)
Q Consensus       661 y~~fE~~  667 (676)
                      ...+|.-
T Consensus        86 l~~~~~~   92 (95)
T d1tjca_          86 LKYFEYI   92 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.99  E-value=0.03  Score=49.28  Aligned_cols=83  Identities=8%  Similarity=-0.114  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHHcCCCc----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHH
Q 005817          442 HYISHLLTVYEKAEAMGCLT----------------------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL  499 (676)
Q Consensus       442 ~~~~~a~~iye~al~~~p~~----------------------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l  499 (676)
                      |+.+.|...|.+|+...+..                      .+.|...+..+...|++++|+..+++++ ...|.+...
T Consensus        25 g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al-~~~P~~e~~  103 (179)
T d2ff4a2          25 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT-FEHPYREPL  103 (179)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH-HhCCccHHH
Confidence            56777777777777763321                      2467888999999999999999999999 899999999


Q ss_pred             HHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817          500 WLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT  535 (676)
Q Consensus       500 W~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~  535 (676)
                      |...+......|.          ..++.+.|+++..
T Consensus       104 ~~~l~~al~~~Gr----------~~eAl~~y~~~~~  129 (179)
T d2ff4a2         104 WTQLITAYYLSDR----------QSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHTTTC----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC----------HHHHHHHHHHHHH
Confidence            9999999988774          6777777877744

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=95.99  E-value=0.58  Score=42.92  Aligned_cols=234  Identities=15%  Similarity=0.054  Sum_probs=127.0

Q ss_pred             ChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhh
Q 005817          363 DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEH  442 (676)
Q Consensus       363 ~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~  442 (676)
                      +|+.|+.++.....             .+++++|...|++|.+.-.....+.. ..+... .   ..          ...
T Consensus         1 ~p~~~~~lG~~~~~-------------~~d~~~A~~~~~kAa~~g~~~A~~~L-g~~y~~-G---~~----------~~~   52 (265)
T d1ouva_           1 DPKELVGLGAKSYK-------------EKDFTQAKKYFEKACDLKENSGCFNL-GVLYYQ-G---QG----------VEK   52 (265)
T ss_dssp             CHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHH-T---SS----------SCC
T ss_pred             CHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHc-C---CC----------cch
Confidence            46788888877765             46799999999999764322112211 111111 0   00          125


Q ss_pred             hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCC
Q 005817          443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP  518 (676)
Q Consensus       443 ~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p  518 (676)
                      ++.++...|+.+...+  .+..+...+.+...    .++.+.|...++.+. ..-+.....+............      
T Consensus        53 d~~~a~~~~~~a~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~-~~g~~~a~~~l~~~~~~~~~~~------  123 (265)
T d1ouva_          53 NLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLKYAEGCASLGGIYHDGKVVT------  123 (265)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCSSSC------
T ss_pred             hHHHHHHhhccccccc--ccchhhccccccccccccchhhHHHHHHHhhhh-hhhhhhHHHhhcccccCCCccc------
Confidence            6889999999988764  45555555555543    467889999999998 5444433333322211111111      


Q ss_pred             ChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh-h-----hHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHH
Q 005817          519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMN-Q-----KHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVI  592 (676)
Q Consensus       519 ~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~-~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~  592 (676)
                        .....+...+.++.......    .|......+.. .     .......++.+..   ..+    ..... .+..+..
T Consensus       124 --~~~~~a~~~~~~~~~~~~~~----~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~---~g~----~~A~~-~lg~~y~  189 (265)
T d1ouva_         124 --RDFKKAVEYFTKACDLNDGD----GCTILGSLYDAGRGTPKDLKKALASYDKACD---LKD----SPGCF-NAGNMYH  189 (265)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---TTC----HHHHH-HHHHHHH
T ss_pred             --chhHHHHHHhhhhhcccccc----hhhhhhhhhccCCCcccccccchhhhhcccc---ccc----ccccc-chhhhcc
Confidence              13455656666655433222    22222222221 1     1223334444332   111    11111 2232333


Q ss_pred             H----hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhC
Q 005817          593 Q----KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY  651 (676)
Q Consensus       593 ~----~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~  651 (676)
                      .    ..++++|...|+++.....+...+.+..+... ..+   ...+.+.|.++|++|+..-
T Consensus       190 ~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~-G~g---~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         190 HGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN-GEG---VTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSS---SSCCSTTHHHHHHHHHHHT
T ss_pred             cCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHc-CCC---CccCHHHHHHHHHHHHHCc
Confidence            2    46899999999999887544444445555442 232   1237889999999998863

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.82  E-value=0.045  Score=48.10  Aligned_cols=80  Identities=10%  Similarity=0.000  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHH
Q 005817          140 VARILEIYRLAVMRFKGDI----------------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIY  196 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~----------------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~  196 (676)
                      ...+...|.+|+..+|++.                      ..|...++.+...| +..+...+++++..+|.+..+|..
T Consensus        27 ~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~  106 (179)
T d2ff4a2          27 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQ  106 (179)
T ss_dssp             HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHH
Confidence            3455667777777766553                      45666666666666 578999999999999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHH
Q 005817          197 AAAWEFDHNLNVTAARALMQNGLR  220 (676)
Q Consensus       197 ~a~~e~~~~~~~~~Ar~~~~ral~  220 (676)
                      .+.... ..|+...|...|+++.+
T Consensus       107 l~~al~-~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2         107 LITAYY-LSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred             HHHHHH-HhcCHHHHHHHHHHHHH
Confidence            999886 78899999999998843

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.50  E-value=0.021  Score=48.88  Aligned_cols=87  Identities=11%  Similarity=-0.060  Sum_probs=64.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCCc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-------ChH----
Q 005817          441 EHYISHLLTVYEKAEAMGCLT------------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS-------DSV----  497 (676)
Q Consensus       441 ~~~~~~a~~iye~al~~~p~~------------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P-------~~~----  497 (676)
                      .|.++.|...|++|+...|..            ...|...+..+...|++++|..-+++++ ..+|       ...    
T Consensus        22 ~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~  100 (156)
T d2hr2a1          22 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL-HYFNRRGELNQDEGKLWI  100 (156)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHCCTTSTHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh-hcccccccccccccchhH
Confidence            477999999999999875542            2467778888999999999999999988 5433       322    


Q ss_pred             HHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817          498 QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS  538 (676)
Q Consensus       498 ~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~  538 (676)
                      ..+..+.......|          +.+++.+.|++|+...|
T Consensus       101 ~a~~~~g~~~~~lg----------~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1         101 SAVYSRALALDGLG----------RGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHH----------HHHHHHHHHHHHHHhhH
Confidence            33445556666655          47888899999987543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.49  Score=37.97  Aligned_cols=97  Identities=11%  Similarity=-0.035  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH-HHHHHH
Q 005817          390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE-DIAHRY  468 (676)
Q Consensus       390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~-~lw~~~  468 (676)
                      ...+...+.-|++.++..++..-...|+--...     ..          ...++.+++.+++.++..+|... +.|...
T Consensus        15 ~~el~~~~~q~~~e~~~~~s~qt~F~YAw~Lv~-----S~----------~~~d~~~gI~lLe~~~~~~p~~~rd~lY~L   79 (124)
T d2pqrb1          15 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIK-----ST----------DVNDERLGVKILTDIYKEAESRRRECLYYL   79 (124)
T ss_dssp             HHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHH-----SS----------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc-----CC----------cHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            356677777777776544554433444322222     11          13668899999999998888764 788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817          469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL  502 (676)
Q Consensus       469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~  502 (676)
                      +-.+.+.|++++|+..+++++ +..|++......
T Consensus        80 av~yyklgdy~~A~~~~~~~L-~ieP~n~qA~~L  112 (124)
T d2pqrb1          80 TIGCYKLGEYSMAKRYVDTLF-EHERNNKQVGAL  112 (124)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH-HHCTTCHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHH-ccCCCcHHHHHH
Confidence            888889999999999999999 899998765543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.83  E-value=0.19  Score=40.54  Aligned_cols=87  Identities=8%  Similarity=-0.053  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCCHHHHHHHH
Q 005817          141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARALM  215 (676)
Q Consensus       141 ~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~P~~~-~lW~~~a~~e~~~~~~~~~Ar~~~  215 (676)
                      .+.+.-|+......|+ .+....|+=-+.+..    ..++..+|+.++..+|.+. +.|...+--.+ ..|+++.|+..+
T Consensus        19 ~~~~~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~~   96 (124)
T d2pqrb1          19 EILRQQVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYV   96 (124)
T ss_dssp             HHHHHHHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence            4445556666555664 778888875555543    2468899999999998754 56655555554 578999999999


Q ss_pred             HHHHHhCCCCHHHH
Q 005817          216 QNGLRVCPTSEELW  229 (676)
Q Consensus       216 ~ral~~~p~~~~lW  229 (676)
                      +++|+..|++..+.
T Consensus        97 ~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          97 DTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHCTTCHHHH
T ss_pred             HHHHccCCCcHHHH
Confidence            99999999987654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=92.83  E-value=3.2  Score=37.40  Aligned_cols=235  Identities=13%  Similarity=0.028  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817          158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD---HNLNVTAARALMQNGLRVCPTSEELWVEYL  233 (676)
Q Consensus       158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~---~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~  233 (676)
                      ++.|..........+ ..++.+.|++|...  .++..+..++.+...   ...+...|...+..+....  ++..+..+.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            445555555544444 45677777777653  456666666666543   1346777777777776543  233333332


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817          234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ  313 (676)
Q Consensus       234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (676)
                      .+...            +...                                                   ..+.+.|.
T Consensus        78 ~~~~~------------~~~~---------------------------------------------------~~~~~~a~   94 (265)
T d1ouva_          78 NLYYS------------GQGV---------------------------------------------------SQNTNKAL   94 (265)
T ss_dssp             HHHHH------------TSSS---------------------------------------------------CCCHHHHH
T ss_pred             ccccc------------cccc---------------------------------------------------chhhHHHH
Confidence            22111            0000                                                   01345677


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHHhc-ccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhH
Q 005817          314 TIYSGAVEALPSSFNLRQRFFEIVEATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ  392 (676)
Q Consensus       314 ~iy~~Al~~~p~~~~~~~~~~~~~~~fe-~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~  392 (676)
                      ..|+.+.+..+.......  ...+.... .......+...+...  ..+.++..+..++..+..+...         ...
T Consensus        95 ~~~~~a~~~g~~~a~~~l--~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~L~~~~~~~~~~---------~~~  161 (265)
T d1ouva_          95 QYYSKACDLKYAEGCASL--GGIYHDGKVVTRDFKKAVEYFTKA--CDLNDGDGCTILGSLYDAGRGT---------PKD  161 (265)
T ss_dssp             HHHHHHHHTTCHHHHHHH--HHHHHHCSSSCCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHTSSS---------CCC
T ss_pred             HHHhhhhhhhhhhHHHhh--cccccCCCcccchhHHHHHHhhhh--hcccccchhhhhhhhhccCCCc---------ccc
Confidence            788888876544322221  11221111 111233344444333  2345677888888887653221         244


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 005817          393 MQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLY  472 (676)
Q Consensus       393 ~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~  472 (676)
                      ...+...++.+.+.-....... .........   .           ...++++|...|+++...+  ++..+...+.++
T Consensus       162 ~~~~~~~~~~a~~~g~~~A~~~-lg~~y~~g~---~-----------~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y  224 (265)
T d1ouva_         162 LKKALASYDKACDLKDSPGCFN-AGNMYHHGE---G-----------ATKNFKEALARYSKACELE--NGGGCFNLGAMQ  224 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTC---S-----------SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             cccchhhhhccccccccccccc-hhhhcccCc---c-----------cccchhhhhhhHhhhhccc--CHHHHHHHHHHH
Confidence            6677788888876432221111 111111100   0           1256899999999998874  567777888887


Q ss_pred             Hh----cCCHHHHHHHHHHHh
Q 005817          473 LQ----LGKLDEARKLAAKLC  489 (676)
Q Consensus       473 ~~----~~~~~~A~~l~~~al  489 (676)
                      ..    ..++++|...+++|+
T Consensus       225 ~~G~g~~~n~~~A~~~~~kAa  245 (265)
T d1ouva_         225 YNGEGVTRNEKQAIENFKKGC  245 (265)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHH
T ss_pred             HcCCCCccCHHHHHHHHHHHH
Confidence            75    347888999998888

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.75  E-value=0.18  Score=42.64  Aligned_cols=84  Identities=7%  Similarity=-0.161  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCC-------CHH----HHH
Q 005817          140 VARILEIYRLAVMRFKGDI------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPK-------VPG----VWI  195 (676)
Q Consensus       140 ~~~~~~iyeral~~~p~~~------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~-------~~~----lW~  195 (676)
                      ...|...|++|+...|...            ..|...+....+.| +..+..-+++++.+.|.       ...    ++.
T Consensus        25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~  104 (156)
T d2hr2a1          25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY  104 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHh
Confidence            6779999999999888653            34555555555666 57788888888876542       222    333


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Q 005817          196 YAAAWEFDHNLNVTAARALMQNGLRVCPT  224 (676)
Q Consensus       196 ~~a~~e~~~~~~~~~Ar~~~~ral~~~p~  224 (676)
                      ..+... ...|+.+.|...|++|+.+.|.
T Consensus       105 ~~g~~~-~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1         105 SRALAL-DGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHH-HHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHhhHH
Confidence            445554 3688999999999999988764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=82.12  E-value=5.5  Score=31.69  Aligned_cols=116  Identities=16%  Similarity=0.018  Sum_probs=73.1

Q ss_pred             chhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817          389 VPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY  468 (676)
Q Consensus       389 ~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~  468 (676)
                      +..++++|...|++|.+.-.....+..      ...               ...+.+++...|+++...  .++......
T Consensus         5 v~kd~~~A~~~~~kaa~~g~~~a~~~l------~~~---------------~~~~~~~a~~~~~~aa~~--g~~~a~~~L   61 (133)
T d1klxa_           5 VKKDLKKAIQYYVKACELNEMFGCLSL------VSN---------------SQINKQKLFQYLSKACEL--NSGNGCRFL   61 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTHHHHH------HTC---------------TTSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHCCChhhhhhh------ccc---------------cccCHHHHHHHHhhhhcc--cchhhhhhH
Confidence            357889999999999875332222211      110               124578999999999876  456666777


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817          469 VTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK  536 (676)
Q Consensus       469 ~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~  536 (676)
                      +.++..    ..++++|...+++++...+|.   --.....+... |.   .++  .|..++.+.|++|...
T Consensus        62 g~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~---a~~~Lg~~y~~-G~---gv~--~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          62 GDFYENGKYVKKDLRKAAQYYSKACGLNDQD---GCLILGYKQYA-GK---GVV--KNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHH-TS---SSC--CCHHHHHHHHHHHHHT
T ss_pred             HHhhhhccccchhhHHHHHHHhhhhccCcch---HHHHHHHHHHc-CC---ccC--CCHHHHHHHHHHHHHC
Confidence            777664    357899999999999433332   22223333332 21   011  2678888999998764