Citrus Sinensis ID: 005869

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670--
MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERKKLDLPVQKNLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISCQSSSRMELETVGNFPHNSSEKNCFASEVPEFSASPSREMENERNAEHTSLPQFCRSIRNPCPALRKEHENKNCTDSVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLVVENDAAIDMSENTGLQSAHFDYSYLKGTAIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEAKFGANISHLGSYSEIAEKSMERFVSVISKYRCTSGSRASGLRAPLKDVRNTCTVRSPVAVDFSQFEYVPKSRKSDLASRRL
ccccccHHHHHHHccccccccccccEEEEEEHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHcccEEEEEccccccccccccEEEEccccccccEEEEccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccEEccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEcccccccccccccc
ccHHHHHHHHHHHHccccHHHccccEEEEEHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHcccEEEEEEccccHHccccHHHHHHHccccccEEccHHHHcHHHHHccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccEccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccHHHHHHHHHHcccccccccccccccHHHccccccccccccccHHHccEcccccccccccccc
mgiqgllpllksimipiHIKELEGccvavdtyswlhkGALSCsrelckglptsrhidyCMHRVNLLrhygvkpilifdggllpmKIEQENKRARSRKENLARAIEcesegnssasYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVitedsdlipfgcsRIIFkmdkfgqgveFQCSmlqknkdlsfggfTKQMLLEMCILSGcdylqslpgmGLKRAHALISKFKSYDKVIKHLkystvsvppfyeesfGKAVLTFQhqrvydpktedIVHLSCIsdnigndlDFLAkgiaigdldpftqlpfqevsdnshlvvgqnshlknfkpeserkkldlpvqknlltkkfttprispnhfspeetsslspgehhtaeascdiscqsssrmeletvgnfphnssekncfasevpefsaspsremenernaehtslpqfcrsirnpcpalrkehenknctdsvvgkgrtenrkVIVRSSYFLhkqvnkddqenkQEKLVVENdaaidmsentglqsahfdysylkgtAIKRKTSLIDSVHTDKMGSKLMRTNAslhnngysdpnldktiatetdeakfganishlgsYSEIAEKSMERFVSVISKYrctsgsrasglraplkdvrntctvrspvavdfsqfeyvpksrksdlasrrl
MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIEcesegnssasYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNshlknfkpeserkkldlpvqknlltkkfttprispnhfsPEETSSLSPGEHHTAEASCDISCQSSSRMELETVGNFPHNSSEKNCFASEVPEFSASPSREMENERnaehtslpqfcRSIRNPCpalrkehenknctdsvvgkgrtenrkvivrssyflhkqvnkddqenkqEKLVVENDAAIDMSENTGLQSAHFDYSYLKGTAIKRKTSLIDSVHTDKMGSKLMRTNAslhnngysdpNLDKTIATETDEAKFGANISHLGSYSEIAEKSMERFVSVISKYRctsgsrasglraplkdvrntctvrspvavdfsqfeyvpksrksdlasrrl
MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERKKLDLPVQKNLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISCQSSSRMELETVGNFPHNSSEKNCFASEVPEFSASPSREMENERNAEHTSLPQFCRSIRNPCPALRKEHENKNCTDSVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLVVENDAAIDMSENTGLQSAHFDYSYLKGTAIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEAKFGANISHLGSYSEIAEKSMERFVSVISKYRCTSGSRASGLRAPLKDVRNTCTVRSPVAVDFSQFEYVPKSRKSDLASRRL
****GLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMK******************************YEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVV*******************************************************************************************************************************************************KVIVRSSYFLH******************************LQSAHFDYSYLKGTAIKRKTSLID****************************************FGANISHLGSYSEIAEKSMERFVSVISKYRCTSG****GLRAPLKDVRNTCTVRSPVAVDFSQFEY**************
MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKI********************************YQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQL*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQE**********LARAI*********ASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERKKLDLPVQKNLLTKKFTTPRISPNHF**********************SCQSSSRMELETVGNFPHNSSEKNCFASE********************TSLPQFCRSIRNPCPALRKEHENKNCTDSVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLVVENDAAIDMSENTGLQSAHFDYSYLKGTAIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEAKFGANISHLGSYSEIAEKSMERFVSVISKYRCTSGSRASGLRAPLKDVRNTCTVRSPVAVDFSQFEY**************
*GIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVS**********************************************************************************************************************************************************************FL**********************************************************************************************************************SVISKYR************************SPVAVDFSQFE***************
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MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERKKLDLPVQKNLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISCQSSSRMELETVGNFPHNSSEKNCFASEVPEFSASPSREMENERNAEHTSLPQFCRSIRNPCPALRKEHENKNCTDSVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLVVENDAAIDMSENTGLQSAHFDYSYLKGTAIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEAKFGANISHLGSYSEIAEKSMERFVSVISKYRCTSGSRASGLRAPLKDVRNTCTVRSPVAVDFSQFEYVPKSRKSDLASRRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query672 2.2.26 [Sep-21-2011]
Q8L6Z7735 Exonuclease 1 OS=Arabidop yes no 0.985 0.900 0.540 0.0
Q60GC1 836 Exonuclease 1 OS=Oryza sa yes no 0.936 0.752 0.492 1e-167
Q54ED2 1046 Exonuclease 1 OS=Dictyost yes no 0.425 0.273 0.489 7e-75
Q803U7 806 Exonuclease 1 OS=Danio re yes no 0.465 0.388 0.462 3e-72
Q9W6K2734 Exonuclease 1 OS=Xenopus N/A no 0.470 0.430 0.411 3e-69
Q9UQ84 846 Exonuclease 1 OS=Homo sap yes no 0.485 0.385 0.409 8e-67
Q9QZ11 837 Exonuclease 1 OS=Mus musc yes no 0.550 0.442 0.390 1e-66
P39875702 Exodeoxyribonuclease 1 OS yes no 0.441 0.423 0.387 2e-60
P53695571 Exodeoxyribonuclease 1 OS yes no 0.491 0.577 0.371 2e-60
Q24558732 Exonuclease 1 OS=Drosophi yes no 0.477 0.438 0.381 3e-59
>sp|Q8L6Z7|EXO1_ARATH Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2 Back     alignment and function desciption
 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/745 (54%), Positives = 478/745 (64%), Gaps = 83/745 (11%)

Query: 1   MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
           MGIQGLLPLLKSIM+PIHIKELEGC VAVDTYSWLHKGALSCSRELCKGLPT RHI YCM
Sbjct: 1   MGIQGLLPLLKSIMVPIHIKELEGCIVAVDTYSWLHKGALSCSRELCKGLPTKRHIQYCM 60

Query: 61  HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
           HRVNLLRH+GVKPI++FDGG LPMK+EQENKRARSRKENLARA+E E+ GNSSA+YE Y 
Sbjct: 61  HRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLARALEHEANGNSSAAYECYS 120

Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
           KAVDISPSIAHELIQVL+Q+NV Y+VAPYEADAQM FLA++KQV+A+ITEDSDLIPFGC 
Sbjct: 121 KAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCL 180

Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
           RIIFKMDKFG GVEFQ S L KNKDLS  GF+ QMLLEMCILSGCDYLQSLPGMGLKRAH
Sbjct: 181 RIIFKMDKFGHGVEFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAH 240

Query: 241 ALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDN 300
           ALI+KFKSYD+VIKHLKYSTVSVPP YEESF +A+LTF+HQRVYDP  EDI+HL  ISDN
Sbjct: 241 ALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDN 300

Query: 301 IGNDLDF--------LAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERK 352
           +G D DF        +AKGIA+G LDPFTQLPFQ  S    L V   S  K+FKPE+ +K
Sbjct: 301 LGEDSDFVGPSMPQDIAKGIALGQLDPFTQLPFQAESVTPKLAVDDISRPKSFKPETVKK 360

Query: 353 KLDLPVQKNLLTK-----------KFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISC 401
           KLDLPVQKNLLTK           KF  PRISP   +P + S   P ++     + D+  
Sbjct: 361 KLDLPVQKNLLTKYFCFASVEAKRKFKAPRISPMSLTPTDESPSIPDDN-----TPDLDA 415

Query: 402 QSSSRMELETVGNFPHNSSEKNCFASEVPEFSASPSREM--ENERNAEHT---------- 449
            SS     +T    P  S  +N   SEV E   SP  +    N ++  H           
Sbjct: 416 LSS-----QTTNESPVYSLGENPCVSEVAEKRDSPDDDAVERNHKDLHHKYCEREVDRPK 470

Query: 450 --SLPQFCRS-----------------IRNPCPALRKEHENKNCTDSVVGKGRTENRKVI 490
             SL    RS                   N C  + +    K   +      R E+ + I
Sbjct: 471 SDSLKVIVRSKYFKQKQEDKSLKQSIPCLNDCSVIGQRKAVKTVINMSSASKREESHRAI 530

Query: 491 VRSSYFLHKQVNKDDQENKQEKLVVENDAA--------IDMSENTGLQSAHFDYSYLKGT 542
             S    H ++  D ++ K+      N+ A        I+   N   Q+   +      T
Sbjct: 531 ATSPCLHHDRIYNDHEDAKEASFSAMNEVAERTINTHKINHQINEEEQNPSVEIPSAFST 590

Query: 543 ---AIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGY---------SDPNLDKTIATETDE 590
               I   +  IDS H    G + + ++ +LH             +D  L+     ETD+
Sbjct: 591 PENVIPLSSIAIDSCHGVATGKRKLDSDENLHKENLKSKHMRMDETDTALNAETPLETDD 650

Query: 591 A-KFGANISHLGSYSEIAEKSMERFVSVISKYRCT-SGSRASGLRAPLKDVRNTCTVRS- 647
             KFG+NISH+G YSEIAEKS+ERFVS IS ++ + +GSRASGLRAPLKD+RNTC  +  
Sbjct: 651 VEKFGSNISHIGHYSEIAEKSVERFVSAISSFKYSGTGSRASGLRAPLKDIRNTCPSKGL 710

Query: 648 PVAVDFSQFEYVPKSRKSDLASRRL 672
            +  D S+F Y   +R     SRR+
Sbjct: 711 SLKPDISKFGYASSNRHMVTKSRRM 735
Putative 5'->3' double-stranded DNA exonuclease which may also contain a cryptic 3'->5' double-stranded DNA exonuclease activity. May be involved in DNA mismatch repair (MMR).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q60GC1|EXO1_ORYSJ Exonuclease 1 OS=Oryza sativa subsp. japonica GN=EXO1 PE=2 SV=1 Back     alignment and function description
>sp|Q54ED2|EXO1_DICDI Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 PE=3 SV=1 Back     alignment and function description
>sp|Q803U7|EXO1_DANRE Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1 Back     alignment and function description
>sp|Q9W6K2|EXO1_XENLA Exonuclease 1 OS=Xenopus laevis GN=exo1 PE=2 SV=1 Back     alignment and function description
>sp|Q9UQ84|EXO1_HUMAN Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2 Back     alignment and function description
>sp|Q9QZ11|EXO1_MOUSE Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2 Back     alignment and function description
>sp|P39875|EXO1_YEAST Exodeoxyribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EXO1 PE=1 SV=2 Back     alignment and function description
>sp|P53695|EXO1_SCHPO Exodeoxyribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=exo1 PE=1 SV=1 Back     alignment and function description
>sp|Q24558|EXO1_DROME Exonuclease 1 OS=Drosophila melanogaster GN=tos PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query672
359483569658 PREDICTED: exonuclease 1-like [Vitis vin 0.940 0.960 0.620 0.0
449525676685 PREDICTED: LOW QUALITY PROTEIN: exonucle 0.980 0.962 0.596 0.0
449459386685 PREDICTED: exonuclease 1-like [Cucumis s 0.980 0.962 0.596 0.0
357519191 791 Exonuclease [Medicago truncatula] gi|355 0.982 0.834 0.546 0.0
356528364743 PREDICTED: exonuclease 1-like [Glycine m 0.980 0.886 0.544 0.0
297845884744 hypothetical protein ARALYDRAFT_473168 [ 0.983 0.888 0.545 0.0
145324070735 exonuclease 1 [Arabidopsis thaliana] gi| 0.985 0.900 0.540 0.0
297740589547 unnamed protein product [Vitis vinifera] 0.563 0.692 0.755 1e-177
357131085 893 PREDICTED: exonuclease 1-like [Brachypod 0.944 0.711 0.491 1e-167
356512555481 PREDICTED: exonuclease 1-like [Glycine m 0.694 0.970 0.600 1e-167
>gi|359483569|ref|XP_002269417.2| PREDICTED: exonuclease 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/693 (62%), Positives = 510/693 (73%), Gaps = 61/693 (8%)

Query: 1   MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
           MGIQGLLPLLKSIM+P HIK+L+GC VAVDTYSWLHKGALSCS++LCK +PTSRHIDYCM
Sbjct: 1   MGIQGLLPLLKSIMVPFHIKDLKGCSVAVDTYSWLHKGALSCSKQLCKSIPTSRHIDYCM 60

Query: 61  HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
           HRVNLLRHYGV+PIL+FDGGLLPMKIEQENKRAR RKENLARAIE ES GNS+A+YE YQ
Sbjct: 61  HRVNLLRHYGVEPILVFDGGLLPMKIEQENKRARVRKENLARAIEHESNGNSAAAYECYQ 120

Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
           KAVDISPSIA ELIQVLKQ+NVSYIVAPYEADAQMTFLAVS+QV+A+ITEDSD+IPFGC 
Sbjct: 121 KAVDISPSIARELIQVLKQENVSYIVAPYEADAQMTFLAVSQQVDAIITEDSDMIPFGCP 180

Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
           RIIFKMDKFGQGVEF+ SM+Q+NK+LSF GFTKQM+LEMCILSGCDYLQSLPGMGLK+AH
Sbjct: 181 RIIFKMDKFGQGVEFKYSMIQQNKELSFAGFTKQMILEMCILSGCDYLQSLPGMGLKKAH 240

Query: 241 ALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDN 300
           ALI KFKSYDKVIKHL+Y+T SVPP YEESF KA+LTFQHQRVYDP  EDIVHLS +SDN
Sbjct: 241 ALIKKFKSYDKVIKHLRYATGSVPPLYEESFKKAMLTFQHQRVYDPTIEDIVHLSVLSDN 300

Query: 301 IGNDLDFL--------AKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERK 352
           +G+DLDFL        AKGIA GDLDPFT++PFQ  + +  L++     L++FKPESERK
Sbjct: 301 VGDDLDFLGPLISQDIAKGIATGDLDPFTKMPFQGQNASDGLLLDGTYQLESFKPESERK 360

Query: 353 KLDLPVQKNLLTK-----------KFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISC 401
           K++LP QKNLLT            KF  PRI+PN  +P       P            +C
Sbjct: 361 KIELPAQKNLLTNYFCFTSLEAKGKFRAPRITPNDSNP--VHGFPP-----------TTC 407

Query: 402 QSSSRMELETVGN-FPHNSSEKNCFASEVPEFSASPSREMENERNAEHTSLPQFCRSIRN 460
            S+S ++   +GN  P N S ++  A++ PEF  S S                       
Sbjct: 408 LSASVLKSGNLGNATPSNDSVEDVGAAKTPEFIESASH---------------------- 445

Query: 461 PCPALRKEHENKNCTDSVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLVVENDAA 520
              AL KEHE K   D+  GK   ENRK+IVRS YF HK V ++D++N+ EKL+V N  A
Sbjct: 446 ---ALHKEHECKYDLDAAEGKMPVENRKIIVRSRYFQHKSVKENDRDNENEKLLVNNGDA 502

Query: 521 IDMSENTGLQSAHFDYSYLKGTAIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGYSDPNL 580
            D+ EN   QS  F+ +YLK   +KRK + +DS+  D + +K MRTNASL N    DP++
Sbjct: 503 TDICENKSPQSP-FENNYLKSAIMKRKPTSVDSIQPD-VKAKYMRTNASLANRSNCDPDI 560

Query: 581 DKTIATETDEAKFGANISHLGSYSEIAEKSMERFVSVISKYRCTSGSRASGLRAPLKDVR 640
           D T        KFG+NISHLG YS+IAEKSMERFVSV+S +  +SGSRASGLRAPL+DV+
Sbjct: 561 DDTFIETEGGGKFGSNISHLGHYSDIAEKSMERFVSVLSSFNYSSGSRASGLRAPLRDVQ 620

Query: 641 NTCTVRSPVAVDFSQFEYVP-KSRKSDLASRRL 672
           N    RS V +D ++F YVP K R +  + +RL
Sbjct: 621 NIHPTRSTVGIDVNKFAYVPNKMRTASASQKRL 653

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449525676|ref|XP_004169842.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449459386|ref|XP_004147427.1| PREDICTED: exonuclease 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357519191|ref|XP_003629884.1| Exonuclease [Medicago truncatula] gi|355523906|gb|AET04360.1| Exonuclease [Medicago truncatula] Back     alignment and taxonomy information
>gi|356528364|ref|XP_003532774.1| PREDICTED: exonuclease 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297845884|ref|XP_002890823.1| hypothetical protein ARALYDRAFT_473168 [Arabidopsis lyrata subsp. lyrata] gi|297336665|gb|EFH67082.1| hypothetical protein ARALYDRAFT_473168 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145324070|ref|NP_001077624.1| exonuclease 1 [Arabidopsis thaliana] gi|166232400|sp|Q8L6Z7.2|EXO1_ARATH RecName: Full=Exonuclease 1 gi|332192991|gb|AEE31112.1| exonuclease 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297740589|emb|CBI30771.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357131085|ref|XP_003567173.1| PREDICTED: exonuclease 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|356512555|ref|XP_003524984.1| PREDICTED: exonuclease 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query672
TAIR|locus:2013633735 AT1G29630 [Arabidopsis thalian 0.715 0.654 0.648 1.3e-189
ZFIN|ZDB-GENE-040426-2828 806 exo1 "exonuclease 1" [Danio re 0.467 0.389 0.461 1.3e-72
TAIR|locus:2194085577 AT1G18090 [Arabidopsis thalian 0.464 0.540 0.463 1.1e-71
DICTYBASE|DDB_G0291570 1046 exo1 "5'3'-exonuclease N- and 0.425 0.273 0.493 4.5e-69
ASPGD|ASPL0000033989761 AN3035 [Emericella nidulans (t 0.916 0.809 0.295 5.1e-67
UNIPROTKB|F1S8P2 836 EXO1 "Uncharacterized protein" 0.523 0.421 0.396 1.1e-66
UNIPROTKB|Q9UQ84 846 EXO1 "Exonuclease 1" [Homo sap 0.485 0.385 0.409 4.8e-66
UNIPROTKB|G4NE19780 MGG_00841 "Exonuclease 1" [Mag 0.479 0.412 0.412 5.8e-66
RGD|1309465 836 Exo1 "exonuclease 1" [Rattus n 0.550 0.442 0.392 8.5e-65
UNIPROTKB|Q9W6K2734 exo1 "Exonuclease 1" [Xenopus 0.75 0.686 0.324 1.4e-64
TAIR|locus:2013633 AT1G29630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1586 (563.4 bits), Expect = 1.3e-189, Sum P(2) = 1.3e-189
 Identities = 332/512 (64%), Positives = 377/512 (73%)

Query:     1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
             MGIQGLLPLLKSIM+PIHIKELEGC VAVDTYSWLHKGALSCSRELCKGLPT RHI YCM
Sbjct:     1 MGIQGLLPLLKSIMVPIHIKELEGCIVAVDTYSWLHKGALSCSRELCKGLPTKRHIQYCM 60

Query:    61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
             HRVNLLRH+GVKPI++FDGG LPMK+EQENKRARSRKENLARA+E E+ GNSSA+YE Y 
Sbjct:    61 HRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLARALEHEANGNSSAAYECYS 120

Query:   121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
             KAVDISPSIAHELIQVL+Q+NV Y+VAPYEADAQM FLA++KQV+A+ITEDSDLIPFGC 
Sbjct:   121 KAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCL 180

Query:   181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
             RIIFKMDKFG GVEFQ S L KNKDLS  GF+ QMLLEMCILSGCDYLQSLPGMGLKRAH
Sbjct:   181 RIIFKMDKFGHGVEFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAH 240

Query:   241 ALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDN 300
             ALI+KFKSYD+VIKHLKYSTVSVPP YEESF +A+LTF+HQRVYDP  EDI+HL  ISDN
Sbjct:   241 ALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDN 300

Query:   301 IGNDLDF--------LAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERK 352
             +G D DF        +AKGIA+G LDPFTQLPFQ  S    L V   S  K+FKPE+ +K
Sbjct:   301 LGEDSDFVGPSMPQDIAKGIALGQLDPFTQLPFQAESVTPKLAVDDISRPKSFKPETVKK 360

Query:   353 KLDLPVQKNLLTKKFTTPRISPNH-FSPEETSSLSPGEHHTAEASCDISCQSSSRMELET 411
             KLDLPVQKNLLTK F    +     F     S +S      + +  D +      +  +T
Sbjct:   361 KLDLPVQKNLLTKYFCFASVEAKRKFKAPRISPMSLTPTDESPSIPDDNTPDLDALSSQT 420

Query:   412 VGNFPHNSSEKNCFASEVPEFSASPSREMENERNAEHTSLPQFCRSIRNPCPALRKEHEN 471
                 P  S  +N   SEV E   SP  +   ERN  H  L                 H +
Sbjct:   421 TNESPVYSLGENPCVSEVAEKRDSPDDDAV-ERN--HKDL-----------------H-H 459

Query:   472 KNCTDSVVGKGRTENRKVIVRSSYFLHKQVNK 503
             K C +  V + ++++ KVIVRS YF  KQ +K
Sbjct:   460 KYC-EREVDRPKSDSLKVIVRSKYFKQKQEDK 490
GO:0003677 "DNA binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0004518 "nuclease activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA;ISS
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
ZFIN|ZDB-GENE-040426-2828 exo1 "exonuclease 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2194085 AT1G18090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291570 exo1 "5'3'-exonuclease N- and I-domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000033989 AN3035 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1S8P2 EXO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UQ84 EXO1 "Exonuclease 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G4NE19 MGG_00841 "Exonuclease 1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
RGD|1309465 Exo1 "exonuclease 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9W6K2 exo1 "Exonuclease 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L6Z7EXO1_ARATH3, ., 1, ., -, ., -0.54090.98510.9006yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.27LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.1__3122__AT1G29630.2
annotation not avaliable (744 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
scaffold_603241.1
annotation not avaliable (727 aa)
    • • 0.514
fgenesh1_pg.C_scaffold_4001300
annotation not avaliable (1234 aa)
    • • 0.480
fgenesh2_kg.8__1327__AT5G54260.1
annotation not avaliable (733 aa)
    • • 0.469
fgenesh2_kg.6__3453__AT4G02460.1
annotation not avaliable (923 aa)
    • • 0.469
fgenesh2_kg.8__2404__AT5G63960.1
annotation not avaliable (1092 aa)
   •• • 0.410

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query672
cd09857210 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a 1e-117
cd00128209 cd00128, PIN_FEN1_EXO1-like, PIN domains of Flap E 1e-61
cd0990873 cd09908, H3TH_EXO1, H3TH domain of Exonuclease-1, 5e-33
cd0990173 cd09901, H3TH_FEN1-like, H3TH domains of Flap endo 4e-30
smart0048599 smart00485, XPGN, Xeroderma pigmentosum G N-region 6e-30
PTZ00217393 PTZ00217, PTZ00217, flap endonuclease-1; Provision 4e-29
TIGR03674338 TIGR03674, fen_arch, flap structure-specific endon 1e-27
COG0258310 COG0258, Exo, 5'-3' exonuclease (including N-termi 4e-21
pfam00752100 pfam00752, XPG_N, XPG N-terminal domain 5e-21
cd09868249 cd09868, PIN_XPG, PIN domain of Xeroderma pigmento 1e-20
PRK03980292 PRK03980, PRK03980, flap endonuclease-1; Provision 2e-20
cd0989768 cd09897, H3TH_FEN1-XPG-like, H3TH domains of Flap 3e-20
smart0048473 smart00484, XPGI, Xeroderma pigmentosum G I-region 3e-18
cd09867261 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease 3e-17
cd0990770 cd09907, H3TH_FEN1-Euk, H3TH domain of Flap Endonu 2e-16
pfam0086746 pfam00867, XPG_I, XPG I-region 2e-14
cd09858215 cd09858, PIN_MKT1, PIN domain of Mkt1: A global re 2e-14
cd09870239 cd09870, PIN_YEN1, PIN domain of Yeast Endonucleas 3e-11
cd09856207 cd09856, PIN_FEN1-like, PIN domain of Flap Endonuc 5e-10
TIGR006001034 TIGR00600, rad2, DNA excision repair protein (rad2 3e-08
cd09852120 cd09852, PIN_SF, PIN (PilT N terminus) domain: Sup 9e-08
cd0008071 cd00080, H3TH_StructSpec-5'-nucleases, H3TH domain 1e-06
cd0990052 cd09900, H3TH_XPG-like, H3TH domains of Flap endon 1e-06
cd09869233 cd09869, PIN_GEN1, PIN domain of Gap Endonuclease 8e-06
TIGR00600 1034 TIGR00600, rad2, DNA excision repair protein (rad2 1e-05
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information 
 Score =  347 bits (894), Expect = e-117
 Identities = 115/206 (55%), Positives = 150/206 (72%)

Query: 1   MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
           MGIQGLLP LK I  P+HI E +G  VAVD YSWLH+GA SC+ EL  G PT +++ YCM
Sbjct: 1   MGIQGLLPFLKPIQRPVHISEYKGKRVAVDAYSWLHRGAYSCAEELALGKPTDKYVQYCM 60

Query: 61  HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
            RVN+L HYG+KPIL+FDGG LP K   E +R   R+ENL +A+E   EGN S + E +Q
Sbjct: 61  KRVNMLLHYGIKPILVFDGGPLPSKKGTEEERRERREENLEKALELLREGNRSEARECFQ 120

Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
           +AVDI+P +AHELI+ L+++ V YIVAPYEADAQ+ +LA +  V+AVITEDSDL+ +GC 
Sbjct: 121 RAVDITPEMAHELIKALRKEGVEYIVAPYEADAQLAYLAKTGYVDAVITEDSDLLAYGCP 180

Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDL 206
           +++FK+DK G   E   + L K + L
Sbjct: 181 KVLFKLDKNGSCQEIDLADLLKCRKL 206

Exonuclease-1 (EXO1) is involved in multiple, eukaryotic DNA metabolic pathways, including DNA replication processes (5' flap DNA endonuclease activity and double stranded DNA 5'-exonuclease activity), DNA repair processes (DNA mismatch repair (MMR) and post-replication repair (PRR)), recombination, and telomere integrity. EXO1 functions in the MMS2 error-free branch of the PRR pathway in the maintenance and repair of stalled replication forks. Studies also suggest that EXO1 plays both structural and catalytic roles during MMR-mediated mutation avoidance. EXO1 belongs to the FEN1-EXO1-like family of structure-specific, 5' nucleases. These nucleases contain a PIN (PilT N terminus) domain with a helical arch/clamp region (I domain) of variable length (approximately 43 residues in EXO1 PIN domains) and a H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region. Both the H3TH domain (not included here) and the helical arch/clamp region are involved in DNA binding. Nucleases within this group also have a carboxylate-rich active site that is involved in binding essential divalent metal ion cofactors (Mg2+/Mn2+). EXO1 nucleases also have C-terminal Mlh1- and Msh2-binding domains which allow interaction with MMR and PRR proteins, respectively. Length = 210
>gnl|CDD|189020 cd00128, PIN_FEN1_EXO1-like, PIN domains of Flap Endonuclease-1 (FEN1)-like and Exonuclease-1 (EXO1)-like nucleases, structure-specific, divalent-metal-ion dependent, 5' nucleases Back     alignment and domain information
>gnl|CDD|188628 cd09908, H3TH_EXO1, H3TH domain of Exonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease Back     alignment and domain information
>gnl|CDD|188621 cd09901, H3TH_FEN1-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases: FEN1 (eukaryotic) and EXO1 Back     alignment and domain information
>gnl|CDD|214690 smart00485, XPGN, Xeroderma pigmentosum G N-region Back     alignment and domain information
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional Back     alignment and domain information
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease Back     alignment and domain information
>gnl|CDD|223336 COG0258, Exo, 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|216098 pfam00752, XPG_N, XPG N-terminal domain Back     alignment and domain information
>gnl|CDD|189038 cd09868, PIN_XPG, PIN domain of Xeroderma pigmentosum complementation group G (XPG) nuclease, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional Back     alignment and domain information
>gnl|CDD|188617 cd09897, H3TH_FEN1-XPG-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases Back     alignment and domain information
>gnl|CDD|214689 smart00484, XPGI, Xeroderma pigmentosum G I-region Back     alignment and domain information
>gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information
>gnl|CDD|188627 cd09907, H3TH_FEN1-Euk, H3TH domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease: Eukaryotic homologs Back     alignment and domain information
>gnl|CDD|216163 pfam00867, XPG_I, XPG I-region Back     alignment and domain information
>gnl|CDD|189028 cd09858, PIN_MKT1, PIN domain of Mkt1: A global regulator of mRNAs encoding mitochondrial proteins and eukaryotic homologs Back     alignment and domain information
>gnl|CDD|189040 cd09870, PIN_YEN1, PIN domain of Yeast Endonuclease 1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and fungal homologs Back     alignment and domain information
>gnl|CDD|189026 cd09856, PIN_FEN1-like, PIN domain of Flap Endonuclease-1 (FEN1)-like, structure-specific, divalent-metal-ion dependent, 5' nucleases Back     alignment and domain information
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2) Back     alignment and domain information
>gnl|CDD|189022 cd09852, PIN_SF, PIN (PilT N terminus) domain: Superfamily Back     alignment and domain information
>gnl|CDD|188616 cd00080, H3TH_StructSpec-5'-nucleases, H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination Back     alignment and domain information
>gnl|CDD|188620 cd09900, H3TH_XPG-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases: FEN1 (archaeal), GEN1, YEN1, and XPG Back     alignment and domain information
>gnl|CDD|189039 cd09869, PIN_GEN1, PIN domain of Gap Endonuclease 1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 672
KOG2518556 consensus 5'-3' exonuclease [Replication, recombin 100.0
PTZ00217393 flap endonuclease-1; Provisional 100.0
cd00128316 XPG Xeroderma pigmentosum G N- and I-regions (XPGN 100.0
TIGR03674338 fen_arch flap structure-specific endonuclease. End 100.0
PRK03980292 flap endonuclease-1; Provisional 100.0
KOG2519449 consensus 5'-3' exonuclease [Replication, recombin 100.0
TIGR006001034 rad2 DNA excision repair protein (rad2). All prote 99.97
smart00475259 53EXOc 5'-3' exonuclease. 99.96
COG0258310 Exo 5'-3' exonuclease (including N-terminal domain 99.96
cd00008240 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonucleas 99.96
PRK14976281 5'-3' exonuclease; Provisional 99.95
TIGR00593 887 pola DNA polymerase I. This family is based on the 99.93
PRK05755 880 DNA polymerase I; Provisional 99.92
PRK09482256 flap endonuclease-like protein; Provisional 99.91
KOG2520815 consensus 5'-3' exonuclease [Replication, recombin 99.9
PF00752101 XPG_N: XPG N-terminal domain; InterPro: IPR006085 99.9
smart0048599 XPGN Xeroderma pigmentosum G N-region. domain in n 99.9
PF0086794 XPG_I: XPG I-region; InterPro: IPR006086 This entr 99.9
TIGR00600 1034 rad2 DNA excision repair protein (rad2). All prote 99.81
PHA00439286 exonuclease 99.72
smart0048473 XPGI Xeroderma pigmentosum G I-region. domain in n 99.69
cd0008075 HhH2_motif Helix-hairpin-helix class 2 (Pol1 famil 99.3
PHA02567304 rnh RnaseH; Provisional 99.29
PF02739169 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolv 99.24
smart0027936 HhH2 Helix-hairpin-helix class 2 (Pol1 family) mot 98.66
PF04599425 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 P 98.65
PF12813246 XPG_I_2: XPG domain containing 98.59
PHA03065438 Hypothetical protein; Provisional 98.56
PF01367101 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold 98.4
PF03159237 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: 98.39
COG5366531 Protein involved in propagation of M2 dsRNA satell 97.68
KOG2045 1493 consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involve 97.47
COG5049 953 XRN1 5'-3' exonuclease [DNA replication, recombina 97.17
KOG2044 931 consensus 5'-3' exonuclease HKE1/RAT1 [Replication 95.87
PF05991166 NYN_YacP: YacP-like NYN domain; InterPro: IPR01029 90.38
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 86.93
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2e-81  Score=679.44  Aligned_cols=330  Identities=53%  Similarity=0.887  Sum_probs=313.6

Q ss_pred             CCccccHHHHhhcccccccccccCCEEEeeHHHHHHHHhccCcccccCCCcchhHHHHHHHHHHHHHHcCCeeEEEEeCC
Q 005869            1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGG   80 (672)
Q Consensus         1 MGIkGL~~~Lk~~~~~~~Ls~lkGk~IAIDa~~WLhRg~~sca~el~~G~pt~~~L~~~~~rI~~Ll~~gI~PIfVFDG~   80 (672)
                      |||+||++++++++++.|+++|+|++||||||+|||||+++|+.+++.|.||.+||+||++++++|+.+||+||+||||+
T Consensus         1 MGI~GLlp~~k~~~~~~hi~~~~g~tvavD~y~WLhrg~~~Ca~el~~~~pT~ryi~y~ik~v~lL~~~gikPilVFDG~   80 (556)
T KOG2518|consen    1 MGIQGLLPLLKPALKPIHISEYKGKTVAVDGYCWLHRGALACAEKLAKGKPTDRYIQFFIKRVKLLLSYGIKPILVFDGD   80 (556)
T ss_pred             CCcchhHHHHHHHhhhhhHHHhcCceEEEehhhHHhhhHHhHHHHHhcCCChHHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHhhhcCCCHHHHHHHHHHHHHcCceEEEeccchHHHHHHHHH
Q 005869           81 LLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAV  160 (672)
Q Consensus        81 ~lp~K~~Te~kRr~~R~e~l~kA~e~~k~G~~~eA~e~f~kai~ITp~ma~~li~lLk~~GV~yIVAPYEADAQLAyLa~  160 (672)
                      ++|.|..|+.+|+.+|+++++.|.+++..|+..+|.++|++|++|||+|++.+|++|+..||+|||||||||||||||++
T Consensus        81 ~LP~K~~te~~Rr~~R~~n~~~a~~ll~~G~~~~A~~~fqr~VdIT~~ma~~lI~~~r~~nVe~IVAPyEADAQlayL~~  160 (556)
T KOG2518|consen   81 PLPSKKETERKRRERRKKNLDAAEQLLAEGKESNARECFQRCVDITPEMAHKLIQYLRSQNVEYIVAPYEADAQLAYLER  160 (556)
T ss_pred             CcccccccchHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCceEecCccccchhHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEcCCCCeecccCCeEEEecccCCCceEEEeeccccccccccCCCCHHHHHHHHHHhCCCCCCCCCCCcHHHHH
Q 005869          161 SKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH  240 (672)
Q Consensus       161 ~G~VDaVISeDSDlLlFG~~kVI~kLD~~g~~vei~~~~i~~~~~L~~lGlt~dqFidlcILsGcDYlpgIpGIG~KtA~  240 (672)
                      .|++|+||||||||++|||++||+|||..|+|.++++..+..+.-+. .+|+.++|+.||||+||||+++|||||++||+
T Consensus       161 ~~~i~~IITEDSDLl~fGc~~vifK~d~~G~~le~~~~~l~~~~~l~-~~~~~ekfr~mciLSGCDYl~slpGvGl~tA~  239 (556)
T KOG2518|consen  161 EGIVDAIITEDSDLLVFGCKKVIFKMDSFGNGLEINRSKLPECKPLG-DKFTEEKFRRMCILSGCDYLSSLPGVGLATAH  239 (556)
T ss_pred             cCcceEEEeccccccccCchhheeeccCCCCcccccHhhhhhccccc-cccCHHHHHHHHHhcCCcccccCccccHHHHH
Confidence            99999999999999999999999999999999999887777776665 67999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHH-HhhhCCCCCCchhHHHHHHHHHHcCCCeeeCCCCCceeecCCCCCCCC-CCchhh--------hh
Q 005869          241 ALISKFKSYDKVIK-HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDNIG-NDLDFL--------AK  310 (672)
Q Consensus       241 kLIkky~sle~Il~-~L~~~~~~vP~~Y~e~FrkA~~tFkhq~VfdP~~~~lV~L~~~p~~~~-~~ldfl--------a~  310 (672)
                      ++|.+|.+.+.++. ++...+..||++|+++|.+|..+|+||+||||..++++||+|+|.++. ++++|+        |.
T Consensus       240 k~l~k~~~~d~vi~~~~~~~~l~Vpd~y~~~F~~A~~tF~hQrVydP~~k~~~~L~~~~~~l~~~~~~~~g~~~~~~~av  319 (556)
T KOG2518|consen  240 KLLSKYNTPDRVIISHLLKKKLTVPDDYIENFERANLTFLHQRVYDPIEKKLIHLNPIEDELDNEDLEFLGPLKDPSVAV  319 (556)
T ss_pred             HHHHhcCcHHHHHHHHHhccCCcCCHHHHHHHHHHHHhhhhhheeCchHhhhhcCCchhhhcchhhHhhcccccCcchhh
Confidence            99999999999865 455567899999999999999999999999999999999999999886 455564        88


Q ss_pred             hhhcccCCCCCCCCccccCCC
Q 005869          311 GIAIGDLDPFTQLPFQEVSDN  331 (672)
Q Consensus       311 ~IA~G~ldP~T~~~f~~~~~~  331 (672)
                      .+|.|+++|+|..-|....+.
T Consensus       320 ~~a~g~~~~~t~~~~~~~~~~  340 (556)
T KOG2518|consen  320 EIALGNKDPITFKRIDDHKPH  340 (556)
T ss_pred             hhhhccCCccchhhhhhcccc
Confidence            899999999999988776554

>PTZ00217 flap endonuclease-1; Provisional Back     alignment and domain information
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases Back     alignment and domain information
>TIGR03674 fen_arch flap structure-specific endonuclease Back     alignment and domain information
>PRK03980 flap endonuclease-1; Provisional Back     alignment and domain information
>KOG2519 consensus 5'-3' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>TIGR00600 rad2 DNA excision repair protein (rad2) Back     alignment and domain information
>smart00475 53EXOc 5'-3' exonuclease Back     alignment and domain information
>COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes Back     alignment and domain information
>PRK14976 5'-3' exonuclease; Provisional Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>PRK09482 flap endonuclease-like protein; Provisional Back     alignment and domain information
>KOG2520 consensus 5'-3' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PF00752 XPG_N: XPG N-terminal domain; InterPro: IPR006085 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer Back     alignment and domain information
>smart00485 XPGN Xeroderma pigmentosum G N-region Back     alignment and domain information
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment Back     alignment and domain information
>TIGR00600 rad2 DNA excision repair protein (rad2) Back     alignment and domain information
>PHA00439 exonuclease Back     alignment and domain information
>smart00484 XPGI Xeroderma pigmentosum G I-region Back     alignment and domain information
>cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif Back     alignment and domain information
>PHA02567 rnh RnaseH; Provisional Back     alignment and domain information
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities Back     alignment and domain information
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs Back     alignment and domain information
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses Back     alignment and domain information
>PF12813 XPG_I_2: XPG domain containing Back     alignment and domain information
>PHA03065 Hypothetical protein; Provisional Back     alignment and domain information
>PF01367 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold; InterPro: IPR020045 This entry represents the C-terminal domain of 5' to 3' exonucleases Back     alignment and domain information
>PF03159 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: IPR004859 Signatures of this entry align residues towards the N terminus of several proteins with multiple functions Back     alignment and domain information
>COG5366 Protein involved in propagation of M2 dsRNA satellite of L-A virus [General function prediction only] Back     alignment and domain information
>KOG2045 consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involved in DNA strand exchange and mRNA turnover [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5049 XRN1 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation] Back     alignment and domain information
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification] Back     alignment and domain information
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query672
3qea_Z352 Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) 9e-66
3qe9_Y352 Crystal Structure Of Human Exonuclease 1 Exo1 (D173 7e-65
1ul1_X379 Crystal Structure Of The Human Fen1-Pcna Complex Le 3e-17
3q8k_A341 Crystal Structure Of Human Flap Endonuclease Fen1 ( 9e-17
2izo_A346 Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex L 3e-16
3q8m_A341 Crystal Structure Of Human Flap Endonuclease Fen1 ( 8e-16
1rxv_A336 Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna 1e-15
1mc8_A343 Crystal Structure Of Flap Endonuclease-1 R42e Mutan 1e-15
1b43_A340 Fen-1 From P. Furiosus Length = 340 2e-13
3ory_A363 Crystal Structure Of Flap Endonuclease 1 From Hyper 9e-13
1a76_A326 Flap Endonuclease-1 From Methanococcus Jannaschii L 1e-10
>pdb|3QEA|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In Complex With Dna (Complex Ii) Length = 352 Back     alignment and structure 
Iteration: 1

 Score =  248 bits (632), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 141/344 (40%), Positives = 210/344 (61%), Gaps = 18/344 (5%)
Query: 1   MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
           MGIQGLL  +K    PIH+++ +G  VAVDTY WLHKGA++C+ +L KG PT R++ +CM
Sbjct: 1   MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61  HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
             VN+L  +G+KPIL+FDG  LP K E E  R   R+ NL +  +   EG  S + E + 
Sbjct: 61  KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
           ++++I+ ++AH++I+  + Q V  +VAPYEADAQ+ +L  +  V+A+ITEDSDL+ FGC 
Sbjct: 121 RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
           ++I KMD+FG G+E   + L   + L    FT++    MCILSGCDYL SL G+GL +A 
Sbjct: 181 KVILKMDQFGNGLEIDQARLGMCRQLG-DVFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
            ++    + D  KVIK   H     ++VP  Y   F +A  TF +Q V+DP    ++ L+
Sbjct: 240 KVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLN 299
Query: 296 CISDNIGNDL---------DFLAKGIAIGDLDPFTQLPFQEVSD 330
              D++  +          D +A  IA+G+ D  T   F+++ D
Sbjct: 300 AYEDDVDPETLSYAGQYVDDSIALQIALGNKDINT---FEQIDD 340
>pdb|3QE9|Y Chain Y, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In Complex With Dna (Complex I) Length = 352 Back     alignment and structure
>pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex Length = 379 Back     alignment and structure
>pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In Complex With Product 5'-Flap Dna, Sm3+, And K+ Length = 341 Back     alignment and structure
>pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex Length = 346 Back     alignment and structure
>pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a) In Complex With Substrate 5'-Flap Dna And K+ Length = 341 Back     alignment and structure
>pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna Length = 336 Back     alignment and structure
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From Pyrococcus Horikoshii Length = 343 Back     alignment and structure
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus Length = 340 Back     alignment and structure
>pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From Hyperthermophilic Archaeon Desulfurococcus Amylolyticus Length = 363 Back     alignment and structure
>pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query672
3qe9_Y352 Exonuclease 1; exonuclease, hydrolase-DNA complex; 1e-111
3q8k_A341 Flap endonuclease 1; helix-3 turn-helix, hydrophob 1e-98
1ul1_X379 Flap endonuclease-1; protein complex, DNA-binding 2e-96
2izo_A346 FEN1, flap structure-specific endonuclease; hydrol 5e-90
3ory_A363 Flap endonuclease 1; hydrolase; 2.00A {Desulfuroco 2e-89
1rxw_A336 Flap structure-specific endonuclease; helical clam 2e-87
1a76_A326 Flap endonuclease-1 protein; 5'-3' EXO/endo nuclea 5e-86
1b43_A340 Protein (FEN-1); nuclease, DNA repair, DNA replica 7e-82
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z* Length = 352 Back     alignment and structure
 Score =  339 bits (870), Expect = e-111
 Identities = 136/343 (39%), Positives = 202/343 (58%), Gaps = 15/343 (4%)

Query: 1   MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
           MGIQGLL  +K    PIH+++ +G  VAVDTY WLHKGA++C+ +L KG PT R++ +CM
Sbjct: 1   MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60

Query: 61  HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
             VN+L  +G+KPIL+FDG  LP K E E  R   R+ NL +  +   EG  S + E + 
Sbjct: 61  KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120

Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
           ++++I+ ++AH++I+  + Q V  +VAPYEADAQ+ +L  +  V+A+ITEDS L+ FGC 
Sbjct: 121 RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCK 180

Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
           ++I KMD+FG G+E   + L   + L    FT++    MCILSGCDYL SL G+GL +A 
Sbjct: 181 KVILKMDQFGNGLEIDQARLGMCRQLGD-VFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239

Query: 241 ALISKFKSYD-----KVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
            ++    + D     K I H     ++VP  Y   F +A  TF +Q V+DP    ++ L+
Sbjct: 240 KVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLN 299

Query: 296 CIS--------DNIGNDLD-FLAKGIAIGDLDPFTQLPFQEVS 329
                         G  +D  +A  IA+G+ D  T     + +
Sbjct: 300 AYEDDVDPETLSYAGQYVDDSIALQIALGNKDINTFEQIDDYN 342
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A* Length = 341 Back     alignment and structure
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2 Length = 379 Back     alignment and structure
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} Length = 346 Back     alignment and structure
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus} Length = 363 Back     alignment and structure
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A Length = 336 Back     alignment and structure
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A Length = 326 Back     alignment and structure
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A Length = 340 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query672
3qe9_Y352 Exonuclease 1; exonuclease, hydrolase-DNA complex; 100.0
3q8k_A341 Flap endonuclease 1; helix-3 turn-helix, hydrophob 100.0
3ory_A363 Flap endonuclease 1; hydrolase; 2.00A {Desulfuroco 100.0
1b43_A340 Protein (FEN-1); nuclease, DNA repair, DNA replica 100.0
1ul1_X379 Flap endonuclease-1; protein complex, DNA-binding 100.0
1rxw_A336 Flap structure-specific endonuclease; helical clam 100.0
1a76_A326 Flap endonuclease-1 protein; 5'-3' EXO/endo nuclea 100.0
2izo_A346 FEN1, flap structure-specific endonuclease; hydrol 100.0
1exn_A290 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Ent 99.97
1bgx_T 832 TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi 99.97
3h7i_A305 Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonu 99.69
2y35_A 1140 LD22664P; hydrolase-DNA complex, RNA degradation, 98.74
3pie_A 1155 5'->3' exoribonuclease (XRN1); beta berrel, tudor 98.66
3fqd_A 899 Protein DHP1, 5'-3' exoribonuclease 2; protein-pro 98.33
2a1j_A63 DNA repair endonuclease XPF; XPF, xeroderma pigmen 91.42
1z00_B84 DNA repair endonuclease XPF; helix-hairpin-helix, 89.62
1x2i_A75 HEF helicase/nuclease; alpha helix, helix-hairpin- 85.84
1kft_A78 UVRC, excinuclease ABC subunit C; helix-hairpin-he 85.8
1z00_A89 DNA excision repair protein ERCC-1; helix-hairpin- 84.35
2a1j_B91 DNA excision repair protein ERCC-1; XPF, xeroderma 82.13
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z* Back     alignment and structure
Probab=100.00  E-value=2.5e-76  Score=630.42  Aligned_cols=329  Identities=41%  Similarity=0.708  Sum_probs=300.2

Q ss_pred             CCccccHHHHhhcccccccccccCCEEEeeHHHHHHHHhccCcccccCCCcchhHHHHHHHHHHHHHHcCCeeEEEEeCC
Q 005869            1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGG   80 (672)
Q Consensus         1 MGIkGL~~~Lk~~~~~~~Ls~lkGk~IAIDa~~WLhRg~~sca~el~~G~pt~~~L~~~~~rI~~Ll~~gI~PIfVFDG~   80 (672)
                      |||+|||++|+++.+++++++|+|++||||||+||||++++|+.++..|.++..++.+|++++++|+++||+|||||||.
T Consensus         1 MGI~GL~~~L~~~~~~~~l~~l~Gk~vaIDas~wL~~~~~~~~~~l~~G~~t~~l~~~~~r~l~~L~~~gI~PvfVFDG~   80 (352)
T 3qe9_Y            1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGC   80 (352)
T ss_dssp             -CCTTHHHHTTTSEEEEEGGGGTTSEEEEETHHHHHHHHHHTHHHHHTTCCCCHHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCcchHHHHHHhhCCcCCHHHhCCcEEEEecHHHHHHhhhccchhhcCCCCcHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            99999999999999999999999999999999999999999988788898876666777788889999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHhhhcCCCHHHHHHHHHHHHHcCceEEEeccchHHHHHHHHH
Q 005869           81 LLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAV  160 (672)
Q Consensus        81 ~lp~K~~Te~kRr~~R~e~l~kA~e~~k~G~~~eA~e~f~kai~ITp~ma~~li~lLk~~GV~yIVAPYEADAQLAyLa~  160 (672)
                      ++|.|+.++.+|+++|+++++++|+++++|+.++|.++|++++++||+|+..++++|+.+||+|++||||||||||+|++
T Consensus        81 ~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La~  160 (352)
T 3qe9_Y           81 TLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNK  160 (352)
T ss_dssp             CCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECCcchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEcCCCCeecccCCeEEEecccCCCceEEEeeccccccccccCC--CCHHHHHHHHHHhCCCCCCCCCCCcHHH
Q 005869          161 SKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGG--FTKQMLLEMCILSGCDYLQSLPGMGLKR  238 (672)
Q Consensus       161 ~G~VDaVISeDSDlLlFG~~kVI~kLD~~g~~vei~~~~i~~~~~L~~lG--lt~dqFidlcILsGcDYlpgIpGIG~Kt  238 (672)
                      +|++++|+|+|+|+|+||+++|+++++..++++++....+.   +++.+|  ++++||+|+|+|+||||+|||||||+||
T Consensus       161 ~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~g~~l~~~q~id~~~L~G~D~~pgv~GiG~kt  237 (352)
T 3qe9_Y          161 AGIVQAIITEDSALLAFGCKKVILKMDQFGNGLEIDQARLG---MCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAK  237 (352)
T ss_dssp             TTSCSEEECSCGGGGGGTCSEEEESCCTTSEEEEEEGGGGT---TCCTTCSSCCHHHHHHHHHHHCCSSSCCCTTCCHHH
T ss_pred             CCCeEEEEeCCcCcccccCCeEEEeccCCCCcEEEeHHHHH---HHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCeeHHH
Confidence            99999999999999999999999999987776554433321   356778  9999999999999999999999999999


Q ss_pred             HHHHHHHh--CCHHHHHHHhhh---CCCCCCchhHHHHHHHHHHcCCCeeeCCCCCceeecCCCCCCCCC-Cchh-----
Q 005869          239 AHALISKF--KSYDKVIKHLKY---STVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDNIGN-DLDF-----  307 (672)
Q Consensus       239 A~kLIkky--~sle~Il~~L~~---~~~~vP~~Y~e~FrkA~~tFkhq~VfdP~~~~lV~L~~~p~~~~~-~ldf-----  307 (672)
                      |++||++|  ++++++++++..   .+..+|++|++.|++|+.+|+||+||||..+++|+|+|+|+++.. .++|     
T Consensus       238 A~kli~~~~~~~l~~il~~~~~~l~~~~~vp~~~~~~~~~A~~~F~~q~V~dp~~~~~~~l~~~~~~~~~~~~~~~G~~~  317 (352)
T 3qe9_Y          238 ACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETLSYAGQYV  317 (352)
T ss_dssp             HHHHHHHCCCSCHHHHHTTHHHHHTCCCCCCHHHHHHHHHHHHHHHHCEEEETTTTEEEESSCCCSSCCGGGCCTTCCCC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhCCCEEECCCCCeEeeCCCCCCCCChhhhhhcCCCC
Confidence            99999999  689999998763   246899999999999999999999999999999999999988753 3344     


Q ss_pred             ---hhhhhhcccCCCCCCCCccccCCCc
Q 005869          308 ---LAKGIAIGDLDPFTQLPFQEVSDNS  332 (672)
Q Consensus       308 ---la~~IA~G~ldP~T~~~f~~~~~~~  332 (672)
                         +|.+||.|+|||+|++||..-+|+.
T Consensus       318 ~~~~~~~ia~G~~~p~t~~~~~~~~~~~  345 (352)
T 3qe9_Y          318 DDSIALQIALGNKDINTFEQIDDYNPDT  345 (352)
T ss_dssp             CHHHHHHHHHTCBCTTTCCBCCCCCTTC
T ss_pred             CHHHHHHHhCCCCCcccccccccCCCCC
Confidence               4999999999999999998766553
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A* Back     alignment and structure
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus} Back     alignment and structure
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A Back     alignment and structure
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2 Back     alignment and structure
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A Back     alignment and structure
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A Back     alignment and structure
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} Back     alignment and structure
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A Back     alignment and structure
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Back     alignment and structure
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A Back     alignment and structure
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster} Back     alignment and structure
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Back     alignment and structure
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} Back     alignment and structure
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* Back     alignment and structure
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* Back     alignment and structure
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Back     alignment and structure
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Back     alignment and structure
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 672
d1a77a2207 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuc 9e-42
d1rxwa2217 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuc 5e-41
d1ul1x2216 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuc 8e-40
d1b43a2219 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuc 2e-38
d1ul1x1140 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nu 3e-15
d1rxwa1105 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nu 6e-10
d1b43a1120 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nu 2e-07
d1a77a1108 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nu 5e-06
d1kfta_56 a.60.2.3 (A:) Excinuclease UvrC C-terminal domain 0.003
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 207 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: 5' to 3' exonuclease catalytic domain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  148 bits (375), Expect = 9e-42
 Identities = 35/184 (19%), Positives = 80/184 (43%), Gaps = 5/184 (2%)

Query: 16  PIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGL-----PTSRHIDYCMHRVNLLRHYG 70
            I  ++L+G  VA+D  + L++   S        L       +   +   ++   L    
Sbjct: 12  IISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLEND 71

Query: 71  VKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIA 130
           + PI +FDG    +K +    R   +++   +  E   + +   + ++ ++   ++P + 
Sbjct: 72  ITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMV 131

Query: 131 HELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFG 190
                +L    + Y+ AP E +AQ +++A    V AV+++D D + +G  R++  +    
Sbjct: 132 ENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTK 191

Query: 191 QGVE 194
           +  E
Sbjct: 192 EMPE 195
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 217 Back     information, alignment and structure
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Length = 216 Back     information, alignment and structure
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 219 Back     information, alignment and structure
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 105 Back     information, alignment and structure
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 120 Back     information, alignment and structure
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 108 Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query672
d1ul1x2216 Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo 100.0
d1rxwa2217 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc 100.0
d1b43a2219 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr 100.0
d1a77a2207 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met 100.0
d1ul1x1140 Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo 99.68
d1rxwa1105 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc 99.57
d1a77a1108 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met 99.51
d1b43a1120 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr 99.45
d1cmwa2164 5' to 3' exonuclease domain of DNA polymerase Taq 99.09
d1xo1a1105 T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726] 98.89
d1xo1a2167 T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726] 98.69
d1tfra2169 T4 RNase H {Bacteriophage T4 [TaxId: 10665]} 98.55
d1cmwa1116 5' to 3' exonuclease domain of DNA polymerase Taq 98.49
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 93.36
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 93.28
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 92.71
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 91.4
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 86.9
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 86.13
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 82.24
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: 5' to 3' exonuclease catalytic domain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-43  Score=349.11  Aligned_cols=207  Identities=23%  Similarity=0.302  Sum_probs=150.4

Q ss_pred             CccccHHHHhhc----ccccccccccCCEEEeeHHHHHHHHhccCccc-----ccCCCcchhHHHHHHHHHHHHHHcCCe
Q 005869            2 GIQGLLPLLKSI----MIPIHIKELEGCCVAVDTYSWLHKGALSCSRE-----LCKGLPTSRHIDYCMHRVNLLRHYGVK   72 (672)
Q Consensus         2 GIkGL~~~Lk~~----~~~~~Ls~lkGk~IAIDa~~WLhRg~~sca~e-----l~~G~pt~~~L~~~~~rI~~Ll~~gI~   72 (672)
                      ||+|||+||++.    .++.++++|+|++|||||++|||++.++|...     ...|.+ +.++..++.++..|+.+||+
T Consensus         1 GIkgL~~~l~~~~~~~i~~~~l~~l~gk~vaIDas~~l~~~l~~~~~~~~~l~~~~~~~-~~~l~~~~~~~~~l~~~~I~   79 (216)
T d1ul1x2           1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGET-TSHLMGMFYRTIRMMENGIK   79 (216)
T ss_dssp             CCTTHHHHHHTTCTTSCCEECGGGGTTCCEEEEHHHHHHHHHSCC-------------C-CHHHHHHHHHHHHHHHTTCC
T ss_pred             CcchHHHHHHHhCcCceEEecHHHcCCCEEEEEeHHHHHHHHHHhccccchhhccCCCC-cHHHHHHHHHHHHHHHcCCe
Confidence            999999999974    47889999999999999999999998887642     123444 46888888899999999999


Q ss_pred             eEEEEeCCCCchhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHhhhcCCCHHHHHHHHHHHHHcCceEEEeccchH
Q 005869           73 PILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEAD  152 (672)
Q Consensus        73 PIfVFDG~~lp~K~~Te~kRr~~R~e~l~kA~e~~k~G~~~eA~e~f~kai~ITp~ma~~li~lLk~~GV~yIVAPYEAD  152 (672)
                      |||||||.++|.|.++..+|+++|+++..++.+....++..++.+++++.+.|++.++..++++|+.+||+|++||||||
T Consensus        80 pifVFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ll~~~gv~~i~Ap~EAd  159 (216)
T d1ul1x2          80 PVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAE  159 (216)
T ss_dssp             EEEEECCSCCSCCCCCCCCC-----------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSSCHH
T ss_pred             EEEEEcCCCCccccchhhhhhhhHHHhhhhHHhhhhcchHHHHHHhhccCeeccHHHHHHHHHHHHhcCeeeEeccchHH
Confidence            99999999999999999899888887776666666777788888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCeecccCCeEEEecccCCCceEEEeeccccccccccCC
Q 005869          153 AQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGG  210 (672)
Q Consensus       153 AQLAyLa~~G~VDaVISeDSDlLlFG~~kVI~kLD~~g~~vei~~~~i~~~~~L~~lG  210 (672)
                      ||||||+++|+||+|+|+|||+|+|||++||++++..+.+. ..+..++...+++.+|
T Consensus       160 aq~A~L~~~g~vd~v~S~DsD~l~fG~~~vi~~~~~~~~~~-~~~~~~~~~~il~~LG  216 (216)
T d1ul1x2         160 ASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKK-LPIQEFHLSRILQELG  216 (216)
T ss_dssp             HHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CC-CCEEEEEHHHHHHHHT
T ss_pred             HHHHHHHhcCceEEEEccccceeccCCcEEEEecccccCCC-CcEEEEEHHHHHHhcC
Confidence            99999999999999999999999999999999998765421 1123355555665544
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Back     information, alignment and structure
>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Back     information, alignment and structure
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure