Citrus Sinensis ID: 005930

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------67
MLAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKELNLEKELRLEKDLKSEPKTKSSILVKKQTKKHFSRTIQEPVGSDFSSGATLATTGDIQNGSVATQAGGCERPTNTDAIVDGNSSLADNNLEKVEELSSAKGLLSKLGRKPAVPDENRRATYSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGRGWVGEYEPLPTPVLMLETCTQKESALFSKLQSTADVRKDDTAFRIPIPAKVHPVHRPISEGNSPLFRPANGLTPEGKTPHFSSAGKKPSTPVNAIKQKHNPFSRTSAEPENKVSKQVELNLPPSANQSKGDTVAGKQVSVKLETGVSRSTEMVPRNMHLLQSSPSKQQNGNVTSNSGNARVISPSSNNVPSQMAGAATFFPHGPEQGRSDSVHLMKTLNEKAQKQQNSSNQSAINTPPVMPSVPSVRRDDSGNAAAVAARAWMSIGAGGFKPPAENSTSPKNQISAESLYNPTREFHTQISRARGEFPLSVGMQFQTEKNSFPPQGFMPQPVRAVNEAHFQNRPMVFPQLLTNDFARFQMQSPWRGLSPHSQPRPRQEGLPPDLNISFQSPGSPVKQSTGVLVDSQQPDLALQL
ccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccEEEEEEEEcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccEEEcHHHHccEEEEEcccHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHcccccccccccHHccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccHccccccccccccccccccEEEcccccccccccccccccccccEHcccccccEEEEccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHccc
MLAISSRAALSDVFLICTNamqynapdtvYHKQARAIQELAKKKFHRLRAGIersekelkpekeLNLEKELRLEKdlksepktkssiLVKKQTKKHFsrtiqepvgsdfssgatlattgdiqngsvatqaggcerptntdaivdgnssladnnlEKVEELSSAKGLlsklgrkpavpdenrratysistqpvvrsdsifttfeGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALpagckfgrgwvgeyeplptpvlmLETCTQKESALFSKLQStadvrkddtafripipakvhpvhrpisegnsplfrpangltpegktphfssagkkpstpvnaikqkhnpfsrtsaepenkvskqvelnlppsanqskgdtvagkQVSVKLEtgvsrstemvprnmhllqsspskqqngnvtsnsgnarvispssnnvpsqmagaatffphgpeqgrsdSVHLMKTLNEKAQKQqnssnqsaintppvmpsvpsvrrddsgNAAAVAARAWMsigaggfkppaenstspknqisaeslynptreFHTQIsrargefplsvgmqfqteknsfppqgfmpqpvravneahfqnrpmvfpqllTNDFARfqmqspwrglsphsqprprqeglppdlnisfqspgspvkqstgvlvdsqqpdlalql
MLAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRagiersekelkpekelnlekelrlekdlksepktkssilvkkqtkkhfsrtiqepvgsdfsSGATLATTGDIQNGSVATQAGGCERPTNTDAIVDGNSSLADNNLEKVEELSsakgllsklgrkpavpdenrratysistqpvvrsdSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGRGWVGEYEPLPTPVLMLETCTQKESALFSKLQSTADVRKDDTAfripipakvhpvhrpisegnsPLFRPANGLTPEGKTPhfssagkkpstpvnaikqkhnpfsrtsaepeNKVSKQVELNLppsanqskgdtvagkqvsVKLETgvsrstemVPRNMhllqsspskqqngnVTSNSGNARVISPSSNNVPSQMAGAATFFPHGPEQGRSDSVHLMKTLNEKAQKQqnssnqsaintppvMPSVPSVRRDDSGNAAAVAARAWMSIGAGGFKPPAENSTSPKNQISAESLYNPTREFHTQISRARGEFPLSVGMQFQTEKNSFPPQGFMPQPVRAVNEAHFQNRPMVFPQLLTNDFARFQMQSPWRGLSPHSQPRPRQEGLPPDLNISFQSPgspvkqstgvlvdsqqpdlalql
MLAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIersekelkpekelnlekelrlekdlksePKTKSSILVKKQTKKHFSRTIQEPVGSDFSSGATLATTGDIQNGSVATQAGGCERPTNTDAIVDGNSSLADNNLEKVEElssakgllsklgRKPAVPDENRRATYSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGRGWVGEYEPLPTPVLMLETCTQKESALFSKLQSTADVRKDDTAFRIPIPAKVHPVHRPISEGNSPLFRPANGLTPEGKTPHFSSAGKKPSTPVNAIKQKHNPFSRTSAEPENKVSKQVELNLPPSANQSKGDTVAGKQVSVKLETGVSRSTEMVPRNMHLLQSSPSKQQNGNVTSNSGNARVISPSSNNVPSQMAGAATFFPHGPEQGRSDSVHLMKTLNEkaqkqqnssnqsaINTppvmpsvpsvRRDDSGNAAAVAARAWMSIGAGGFKPPAENSTSPKNQISAESLYNPTREFHTQISRARGEFPLSVGMQFQTEKNSFPPQGFMPQPVRAVNEAHFQNRPMVFPQLLTNDFARFQMQSPWRGLSPHSQPRPRQEGLPPDLNISFQSPGSPVKQSTGVLVDSQQPDLALQL
********ALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKF*************************************************************************************************************************************************PVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGRGWVGEYEPLPTPVLMLETCTQKESALFSKL**********TAFRIPIP******************************************************************************************************************************************************************************************************************ARAWMSI*************************************************************************HFQNRPMVFPQLLTNDFARFQ*******************************************************
*******AALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHR*********************************************************************************************************************************PDENRRA**************IFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGRGWVGEYEP***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************PDLALQL
MLAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKELNLEKELRLEKDLKSEPKTKSS*************TIQEPVGSDFSSGATLATTGDIQNGSVATQAGGCERPTNTDAIVDGNSSLADNNLEKVEELSSAKGLLSKLGRKPAVPDENRRATYSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGRGWVGEYEPLPTPVLMLETCTQKESALFSKLQSTADVRKDDTAFRIPIPAKVHPVHRPISEGNSPLFRPANGLTPEGKT************PVNAIKQKHN***************QVELNLPPSAN***********VSVKLETGVSRSTEMVPRNMHLLQS*************SGNARVISPSSNNVPSQMAGAATFFPHGPEQGRSDSVHLMKTLNE*************INTPPVMPSVPS***********VAARAWMSIGAGGFKP**********QISAESLYNPTREFHTQISRARGEFPLSVGMQFQTEKNSFPPQGFMPQPVRAVNEAHFQNRPMVFPQLLTNDFARFQMQSPW**************GLPPDLNISFQSPGSPVKQSTGVLVDSQQPDLALQL
*LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR***************************************************************A*LA***DIQNGS***Q**GCERPTNTDAIVDGNSSL***********SSAKGLLSKLGRKPAVPDENRRATYSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGRGWVGEYEPLPTPVLML*********************************************************************************************************************************************************************************************************************************************************************************YNPTREFHTQISRARGEFPLSVGMQFQTEKNSFPPQGFMPQPVRAVNEAHFQNRPMVFPQLLTNDFARFQMQSPWRGLS**********GLPPDL*ISF******************QPD*****
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SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKELNLEKELRLEKDLKSEPKTKSSILVKKQTKKHFSRTIQEPVGSDFSSGATLATTGDIQNGSVATQAGGCERPTNTDAIVDGNSSLADNNLEKVEELSSAKGLLSKLGRKPAVPDENRRATYSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGRGWVGEYEPLPTPVLMLETCTQKESALFSKLQSTADVRKDDTAFRIPIPAKVHPVHRPISEGNSPLFRPANGLTPEGKTPHFSSAGKKPSTPVNAIKQKHNPFSRTSAEPENKVSKQVELNLPPSANQSKGDTVAGKQVSVKLETGVSRSTEMVPRNMHLLQSSPSKQQNGNVTSNSGNARVISPSSNNVPSQMAGAATFFPHGPEQGRSDSVHLMKTLNEKAQKQQNSSNQSAINTPPVMPSVPSVRRDDSGNAAAVAARAWMSIGAGGFKPPAENSTSPKNQISAESLYNPTREFHTQISRARGEFPLSVGMQFQTEKNSFPPQGFMPQPVRAVNEAHFQNRPMVFPQLLTNDFARFQMQSPWRGLSPHSQPRPRQEGLPPDLNISFQSPGSPVKQSTGVLVDSQQPDLALQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query669
359494049 898 PREDICTED: uncharacterized protein LOC10 0.976 0.727 0.657 0.0
255578078 933 bromodomain-containing protein [Ricinus 0.979 0.702 0.633 0.0
147776966 923 hypothetical protein VITISV_007685 [Viti 0.964 0.698 0.619 0.0
356524269 793 PREDICTED: uncharacterized protein LOC10 0.932 0.786 0.553 0.0
356569782 833 PREDICTED: uncharacterized protein LOC10 0.938 0.753 0.547 0.0
449517595 881 PREDICTED: uncharacterized protein LOC10 0.931 0.707 0.556 0.0
449444206 903 PREDICTED: uncharacterized protein LOC10 0.931 0.689 0.555 1e-180
356524267 862 PREDICTED: uncharacterized protein LOC10 0.937 0.727 0.539 1e-180
357494567 959 Bromodomain-containing protein [Medicago 0.952 0.664 0.517 1e-177
356569784 857 PREDICTED: uncharacterized protein LOC10 0.932 0.728 0.536 1e-169
>gi|359494049|ref|XP_002277977.2| PREDICTED: uncharacterized protein LOC100267501 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/671 (65%), Positives = 504/671 (75%), Gaps = 18/671 (2%)

Query: 11  SDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKELNLEKE 70
           SDVFLICTNAMQYNAPDT+YHKQARAIQELA+KKF +LR  I RSEKELK E+   L+ E
Sbjct: 234 SDVFLICTNAMQYNAPDTIYHKQARAIQELARKKFQKLRIDIGRSEKELKSEQ---LKPE 290

Query: 71  LRLEKDLKSEPKTKSSILVKKQTKKHFSRTIQEPVGSDFSSGATLATTGDIQNGSVATQA 130
            R EKDLKSE K +S+ LVKKQ KK   RT QEPVGSDFSSGATLAT GD+QNG  ATQA
Sbjct: 291 -RSEKDLKSEQKMRSNPLVKKQIKKPIFRTAQEPVGSDFSSGATLATMGDVQNGFNATQA 349

Query: 131 GGCERPTNTDA-IVDGNSSLADNNLEKVEELSSAKGLLSKLGRKPAVPDENRRATYSIST 189
           GGCERP+N D  I++ N S  DNNLEK EEL S KGLLSK GRKP V DENRRATYSIS 
Sbjct: 350 GGCERPSNVDGLIIESNPSQIDNNLEKAEELFSGKGLLSKFGRKPFVVDENRRATYSISN 409

Query: 190 QPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPA 249
           QP+V S++IF TFE E K LVAVGLHA++SYARSLARFAATLGPVAWKVAS+RIEQALP 
Sbjct: 410 QPIVGSETIFNTFEAEAKQLVAVGLHADHSYARSLARFAATLGPVAWKVASQRIEQALPV 469

Query: 250 GCKFGRGWVGEYEPLPTPVLMLETCTQKESALFSKLQSTADVRKDDTAFRIPIPAKVHPV 309
           G KFGRGWVGE+EPLPTPVLMLET  QKE  L  KLQ  A +RKD+   + P+PAK H V
Sbjct: 470 GSKFGRGWVGEFEPLPTPVLMLETRIQKEPFLVPKLQHNAVLRKDEKISKPPVPAKEHSV 529

Query: 310 HRPISEGNSPLFRPANGLTPEGKTPHFSSAGKKPSTPVNAIKQKHNPFSRTSAEPENKVS 369
             P  EG   LF PA+  T E K P F SAG K + PVN   Q+ NP SR   +PE KV 
Sbjct: 530 SGPTLEGKQSLFCPASAPTTERKQPLFGSAGTKSTPPVNTGNQQQNPLSRNFTQPEKKVL 589

Query: 370 KQVELNLPPSANQSKGDTVAGKQVSVKLETGVSRSTEMVPRNMHLLQSSPSK-------- 421
           KQVELN PPSA+Q+  D V+ KQ+    E    RS E V R+ ++LQS P K        
Sbjct: 590 KQVELNCPPSASQNHADLVSEKQLLNGSEAATPRSMEAVSRSRNILQSLPFKLPDTNGVV 649

Query: 422 ---QQNGNVTSNSGNARVISPSSNNVPSQMAGAATFFPHGPEQGRSDSVHLMKTLNEKAQ 478
                NG  +S     ++I  +S+ VPSQ+A   T+ PHG EQG SD V LM+ L EKAQ
Sbjct: 650 AGGLTNGKPSSRIDGNKMIGSASDTVPSQLARVPTYLPHGAEQGLSDPVQLMRKLAEKAQ 709

Query: 479 KQQNSSNQSAINTPPVMPSVPSVRRDDSGNAAAVAARAWMSIGAGGFKPPAENSTSPKNQ 538
           KQQ SSN S +++PP MPS+PS  R DS NAAA AARAWMSIGAGGFKP AENS +PKN 
Sbjct: 710 KQQKSSNHSPVDSPPAMPSIPSP-RSDSSNAAATAARAWMSIGAGGFKPVAENSITPKNH 768

Query: 539 ISAESLYNPTREFHTQISRARGEFPLSVGMQFQTEKNSFPPQGFMPQPVRAVNEAHFQNR 598
           ISA+SLYNPTRE H Q++R RGEFP+S GM FQ+EKNSFP Q F+PQPVR + EA FQNR
Sbjct: 769 ISADSLYNPTRELHPQVTRFRGEFPVSGGMHFQSEKNSFPLQAFVPQPVR-IGEAQFQNR 827

Query: 599 PMVFPQLLTNDFARFQMQSPWRGLSPHSQPRPRQEGLPPDLNISFQSPGSPVKQSTGVLV 658
           P++FPQL+T D +RFQMQSPW+GL+P++QPR RQE LPPDLNI FQ  GSPV+QS+GVLV
Sbjct: 828 PVIFPQLVTADLSRFQMQSPWQGLNPNTQPRHRQETLPPDLNIGFQPSGSPVRQSSGVLV 887

Query: 659 DSQQPDLALQL 669
           DSQQPDLALQL
Sbjct: 888 DSQQPDLALQL 898

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255578078|ref|XP_002529909.1| bromodomain-containing protein [Ricinus communis] gi|223530586|gb|EEF32463.1| bromodomain-containing protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147776966|emb|CAN63414.1| hypothetical protein VITISV_007685 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356524269|ref|XP_003530752.1| PREDICTED: uncharacterized protein LOC100799986 [Glycine max] Back     alignment and taxonomy information
>gi|356569782|ref|XP_003553075.1| PREDICTED: uncharacterized protein LOC100792844 [Glycine max] Back     alignment and taxonomy information
>gi|449517595|ref|XP_004165831.1| PREDICTED: uncharacterized protein LOC101229993 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449444206|ref|XP_004139866.1| PREDICTED: uncharacterized protein LOC101204699 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356524267|ref|XP_003530751.1| PREDICTED: uncharacterized protein LOC100799455 [Glycine max] Back     alignment and taxonomy information
>gi|357494567|ref|XP_003617572.1| Bromodomain-containing protein [Medicago truncatula] gi|355518907|gb|AET00531.1| Bromodomain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356569784|ref|XP_003553076.1| PREDICTED: uncharacterized protein LOC100793896 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query669
TAIR|locus:2151948916 AT5G55040 "AT5G55040" [Arabido 0.532 0.388 0.482 1.3e-88
TAIR|locus:2030422652 AT1G20670 "AT1G20670" [Arabido 0.225 0.231 0.456 2.8e-40
TAIR|locus:2014594580 AT1G76380 "AT1G76380" [Arabido 0.197 0.227 0.414 2.4e-31
UNIPROTKB|E1BYN6 1834 VTG2 "Vitellogenin-2" [Gallus 0.430 0.157 0.211 0.00091
TAIR|locus:2151948 AT5G55040 "AT5G55040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 755 (270.8 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
 Identities = 181/375 (48%), Positives = 228/375 (60%)

Query:    82 KTKSSILVKKQTKKHFSRTIQEPVGSDFSSGATLATTGDIQNGSVATQAGGCERPTNTDA 141
             K K    VKKQ ++ FSR   E VGSDFSSGA LA+ G  QN  V+TQ GG E+ + TD 
Sbjct:   302 KVKPDSSVKKQVRQPFSRNGLEAVGSDFSSGANLASGGASQNEPVSTQIGGHEKHSYTDV 361

Query:   142 IVDGNSSLADNNLEKVEEXXXXXXXXXXXXRKPAVPDENRRATYSISTQPVVRSDSIFTT 201
             + +GN+SL D+ LEK E+            RK +V +E+RRATY  S Q   RS+SIFTT
Sbjct:   362 LFEGNTSLVDS-LEKAEDLSSGKGLFGKCGRKLSVVEEDRRATYEDSDQQGDRSESIFTT 420

Query:   202 FEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGRGWVGEY 261
             FE E K  VAVGLHAE++Y RSLARFAATLGPVAWK+AS+RIEQALPA  KFGRGWVGEY
Sbjct:   421 FESEIKQFVAVGLHAEHAYGRSLARFAATLGPVAWKIASQRIEQALPADFKFGRGWVGEY 480

Query:   262 EPLPTPVLMLETCTQKE----SALFSKLQSTADVRKDDTAFRIPIPAKVHPVHRPISEGN 317
             EPLPTPVL+ ETCT KE    +++FSK +S A  + ++T F+ P+PAK     RP+ +GN
Sbjct:   481 EPLPTPVLLFETCTPKEPPKKASVFSKRKSNAATKTNETLFKTPLPAKEQQGSRPVRDGN 540

Query:   318 SPLFRPAN-GLTPEGKTPHF--SSAGKKPSTPVNAIKQKHNPFSRTSAEPENKVSKQVEL 374
                  PA+ G   EG +P F  +  G   S   +  +   NP      +P+N++ +QVEL
Sbjct:   541 HAFPFPASIGALSEG-SPSFVATQVGNLKSMSQHEYR---NPSQLDFVKPQNRIPQQVEL 596

Query:   375 NLPPSANQSKGDT--VAGKQVSVKLETGVS-RSTEMVPRNMHLLQSSPSKQQ---NGNVT 428
             NLPP A Q+   +  V   Q   K +T  S RS+  + RNM    S   K Q   NG   
Sbjct:   597 NLPPPAEQTNSGSGCVLENQSFGKSDTVASYRSSSDMMRNMSSTDSEHYKHQMTTNGIFP 656

Query:   429 SNSGNARVISPSSNN 443
                 N +V SP  NN
Sbjct:   657 GGLRNGKV-SPGVNN 670
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
TAIR|locus:2030422 AT1G20670 "AT1G20670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014594 AT1G76380 "AT1G76380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYN6 VTG2 "Vitellogenin-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027307001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (784 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query669
cd0436999 cd04369, Bromodomain, Bromodomain 6e-07
smart00297107 smart00297, BROMO, bromo domain 9e-07
cd0551398 cd05513, Bromo_brd7_like, Bromodomain, brd7_like s 9e-06
cd05509101 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s 2e-05
cd05511112 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf 4e-05
pfam0043984 pfam00439, Bromodomain, Bromodomain 0.004
>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain Back     alignment and domain information 
 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 10 LSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKF 45
           +DV LI +NA  YN P +  +K A+ +++L +K  
Sbjct: 64 EADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99

Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99
>gnl|CDD|197636 smart00297, BROMO, bromo domain Back     alignment and domain information
>gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup Back     alignment and domain information
>gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily Back     alignment and domain information
>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 669
KOG09551051 consensus PHD finger protein BR140/LIN-49 [General 99.61
cd0551398 Bromo_brd7_like Bromodomain, brd7_like subgroup. T 98.86
cd0551298 Bromo_brd1_like Bromodomain; brd1_like subfamily. 98.82
cd05507104 Bromo_brd8_like Bromodomain, brd8_like subgroup. I 98.66
cd05511112 Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum 98.65
cd05504115 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li 98.65
cd05509101 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. 98.62
cd05492109 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family 98.61
cd0550899 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC 98.6
cd05510112 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. 98.59
cd05495108 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb 98.57
cd05524113 Bromo_polybromo_I Bromodomain, polybromo repeat I. 98.56
cd05516107 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s 98.55
cd05497107 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily 98.54
cd05501102 Bromo_SP100C_like Bromodomain, SP100C_like subfami 98.53
cd05502109 Bromo_tif1_like Bromodomain; tif1_like subfamily. 98.5
cd05520103 Bromo_polybromo_III Bromodomain, polybromo repeat 98.47
smart00297107 BROMO bromo domain. 98.46
cd0550397 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s 98.42
cd05519103 Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci 98.41
cd05498102 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil 98.4
cd0550597 Bromo_WSTF_like Bromodomain; Williams syndrome tra 98.4
cd05529128 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like 98.39
cd05499102 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam 98.38
cd05515105 Bromo_polybromo_V Bromodomain, polybromo repeat V. 98.37
cd05500103 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami 98.36
cd05528112 Bromo_AAA Bromodomain; sub-family co-occurring wit 98.36
cd05521106 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik 98.35
cd05518103 Bromo_polybromo_IV Bromodomain, polybromo repeat I 98.35
cd0436999 Bromodomain Bromodomain. Bromodomains are found in 98.35
cd0550699 Bromo_plant1 Bromodomain, uncharacterized subfamil 98.35
PF0043984 Bromodomain: Bromodomain; InterPro: IPR001487 Brom 98.3
cd05525106 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 98.28
cd05517103 Bromo_polybromo_II Bromodomain, polybromo repeat I 98.27
cd05526110 Bromo_polybromo_VI Bromodomain, polybromo repeat V 98.27
cd05496119 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub 98.25
cd05522104 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l 98.2
KOG1474640 consensus Transcription initiation factor TFIID, s 98.03
COG5076371 Transcription factor involved in chromatin remodel 97.69
cd05491119 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, 97.1
KOG1828418 consensus IRF-2-binding protein CELTIX-1, contains 97.04
KOG1828418 consensus IRF-2-binding protein CELTIX-1, contains 93.72
KOG1827629 consensus Chromatin remodeling complex RSC, subuni 93.13
KOG1472720 consensus Histone acetyltransferase SAGA/ADA, cata 91.85
KOG00081563 consensus Transcription initiation factor TFIID, s 90.38
PF12024245 DUF3512: Domain of unknown function (DUF3512); Int 89.69
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information 
Probab=99.61  E-value=3e-16  Score=182.27  Aligned_cols=239  Identities=19%  Similarity=0.127  Sum_probs=150.6

Q ss_pred             ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccccccc-cccchhhhhhHHHHHhhhhccCCC
Q 005930            2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSE-KELKPEKELNLEKELRLEKDLKSE   80 (669)
Q Consensus         2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~~E-~e~k~~~~~~~~~~~~~e~~~k~~   80 (669)
                      .|.+||+||+||+|||+|||.||+.||||||+|.+++|++.++|.+.+.+.+..+ .+..          ..+-.+....
T Consensus       619 ~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~~arke~e~~~~~d~~----------~~~~~~~~~~  688 (1051)
T KOG0955|consen  619 AYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFRNARKEPESEGLLDRE----------SLSHHDHLVK  688 (1051)
T ss_pred             chhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHHhcccchhhhcccchh----------hhcccchhhh
Confidence            5999999999999999999999999999999999999999999999999987655 2111          0000011111


Q ss_pred             CCCCCchhhhhhccCCCCCCCCCcCCCCCCCCcccccccCCCCCCccccCCCCCCCCcccccc-cCCCC----ccccccc
Q 005930           81 PKTKSSILVKKQTKKHFSRTIQEPVGSDFSSGATLATTGDIQNGSVATQAGGCERPTNTDAIV-DGNSS----LADNNLE  155 (669)
Q Consensus        81 ~k~r~~~~~kk~~Kk~~~r~~~E~~GSdfSsgATLAt~gd~~n~~~~~~~~g~~r~~~~d~~~-~~nss----~~d~~~E  155 (669)
                      ...++.   .+..+.+..+-.....-++++...-++..-+-..--...... ..  .+-++.+ ....+    |.+.-.|
T Consensus       689 ~~~~~~---~~~~~~~e~~~v~~e~~~~~~~e~~~~~~~~~~~~~~a~~~~-~~--~~~~~~~~~~~~s~~r~~~~~~~e  762 (1051)
T KOG0955|consen  689 KLERPY---RPNLWAPEEPQVDLETFINLSKEHDLKIPLDKNEKKKATKLS-IP--RNRDSRIIRKEKSRLRKCGIVDTE  762 (1051)
T ss_pred             hhccCC---ccccccccccccccccccccChhhhhccccccchhhhhhhcc-cc--cccccccchhhHHHHhhccCcCcc
Confidence            111221   123344444444444445555433222222211000000000 00  0111111 00000    1110111


Q ss_pred             c--hhhhh-ccccccccCCCCCCCcCccccccCCCCCCCCcCCCCceecccCccceeEEeccccchhhHHHHHHHHHhhC
Q 005930          156 K--VEELS-SAKGLLSKLGRKPAVPDENRRATYSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLG  232 (669)
Q Consensus       156 k--~~dv~-sgkg~~sK~GkKp~~vDE~RRsTYk~s~qp~~~s~sIfstf~~E~KqLVpVGlq~EhsYARSLARFAAdLG  232 (669)
                      .  ..+.. ++..-+.|+|.+.    .+++.+|.+- ...-.++++++.+.++.|++-|++|..+.+|+||+++.+++++
T Consensus       763 ~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~-~s~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~n~t  837 (1051)
T KOG0955|consen  763 TSGSPSIPSGGEKTVKKDGLNS----KNLKMSSDQA-LSSPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQNPT  837 (1051)
T ss_pred             ccCCCCCCCccccchhcccccc----cccccccchh-hcCCCCCCCCCCccccccccCchhhHhhccccccccccccCCC
Confidence            1  00111 1122245777664    8899999742 2223689999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhcCCCCccCCccccCC
Q 005930          233 PVAWKVASRRIEQALPAGCKFGRGWVGEY  261 (669)
Q Consensus       233 PvaW~IAskRIer~LPpg~kFGpGWVGE~  261 (669)
                      ++||.+|+.+++..++.+..||.||+++.
T Consensus       838 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~t  866 (1051)
T KOG0955|consen  838 ASANNLASTSCSVTKATFTGNGVGGDVKT  866 (1051)
T ss_pred             cccccccccccccccCCccCCCCCccccC
Confidence            99999999999999999999999994443

>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup Back     alignment and domain information
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily Back     alignment and domain information
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup Back     alignment and domain information
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily Back     alignment and domain information
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family Back     alignment and domain information
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily Back     alignment and domain information
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily Back     alignment and domain information
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily Back     alignment and domain information
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I Back     alignment and domain information
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily Back     alignment and domain information
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily Back     alignment and domain information
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III Back     alignment and domain information
>smart00297 BROMO bromo domain Back     alignment and domain information
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>cd05499 Bromo_BDF1_2_II Bromodomain Back     alignment and domain information
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V Back     alignment and domain information
>cd05500 Bromo_BDF1_2_I Bromodomain Back     alignment and domain information
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV Back     alignment and domain information
>cd04369 Bromodomain Bromodomain Back     alignment and domain information
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] Back     alignment and domain information
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family Back     alignment and domain information
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II Back     alignment and domain information
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI Back     alignment and domain information
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>PF12024 DUF3512: Domain of unknown function (DUF3512); InterPro: IPR021900 This presumed domain is functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query669
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 3e-12
2d9e_A121 Peregrin; four-helix bundle, transcription activat 5e-12
3rcw_A135 Bromodomain-containing protein 1; transcription, s 5e-12
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 2e-11
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 7e-11
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 9e-04
3uv4_A158 Second bromodomain of human transcription initiat 8e-11
2grc_A129 Probable global transcription activator SNF2L4; br 2e-10
3aad_A292 Transcription initiation factor TFIID subunit 1; p 2e-10
3aad_A292 Transcription initiation factor TFIID subunit 1; p 8e-04
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 3e-09
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 2e-08
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 4e-08
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 4e-08
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 6e-08
3p1f_A119 CREB-binding protein; structural genomics consorti 1e-07
2dat_A123 Possible global transcription activator SNF2L2; br 2e-07
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 2e-07
2r0y_A311 Chromatin structure-remodeling complex protein RSC 2e-07
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 2e-07
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 5e-07
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 5e-07
3dai_A130 ATPase family AAA domain-containing protein 2; anc 1e-06
3d7c_A112 General control of amino acid synthesis protein 5; 1e-06
2r10_A361 Chromatin structure-remodeling complex protein RSC 1e-06
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 1e-06
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 2e-06
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 2e-06
3nxb_A116 CAT eye syndrome critical region protein 2; struct 2e-06
3fkm_X166 Signaling protein; bromodomain, malaria, structura 3e-06
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 4e-06
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 7e-06
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 8e-06
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 1e-04
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 2e-04
4alg_A154 Bromodomain-containing protein 2; signaling protei 2e-04
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 3e-04
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 4e-04
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 Back     alignment and structure
 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 11  SDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSE 56
            +  L+CTNAM YN P+T+Y+K A+ +     K   + R       
Sbjct: 71  DNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERLEHHHHH 116
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121 Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158 Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124 Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117 Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121 Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120 Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130 Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120 Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150 Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116 Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query669
2d9e_A121 Peregrin; four-helix bundle, transcription activat 98.89
3rcw_A135 Bromodomain-containing protein 1; transcription, s 98.87
2grc_A129 Probable global transcription activator SNF2L4; br 98.85
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 98.77
3d7c_A112 General control of amino acid synthesis protein 5; 98.76
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 98.76
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 98.75
2dat_A123 Possible global transcription activator SNF2L2; br 98.75
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 98.74
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 98.74
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 98.74
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 98.74
4alg_A154 Bromodomain-containing protein 2; signaling protei 98.74
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 98.72
3p1f_A119 CREB-binding protein; structural genomics consorti 98.71
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 98.69
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 98.69
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 98.69
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 98.68
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 98.68
3uv4_A158 Second bromodomain of human transcription initiat 98.68
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 98.67
3nxb_A116 CAT eye syndrome critical region protein 2; struct 98.67
3fkm_X166 Signaling protein; bromodomain, malaria, structura 98.64
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 98.6
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 98.55
3aad_A292 Transcription initiation factor TFIID subunit 1; p 98.48
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 98.47
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 98.45
2r10_A361 Chromatin structure-remodeling complex protein RSC 98.27
2r0y_A311 Chromatin structure-remodeling complex protein RSC 98.27
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 98.25
3dai_A130 ATPase family AAA domain-containing protein 2; anc 98.22
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 98.17
2r0y_A311 Chromatin structure-remodeling complex protein RSC 98.16
2r10_A361 Chromatin structure-remodeling complex protein RSC 98.12
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 98.06
3aad_A292 Transcription initiation factor TFIID subunit 1; p 97.97
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 97.57
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 97.05
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=98.89  E-value=1.5e-09  Score=97.53  Aligned_cols=53  Identities=25%  Similarity=0.346  Sum_probs=49.1

Q ss_pred             ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Q 005930            2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIER   54 (669)
Q Consensus         2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d~~~   54 (669)
                      .|.++++|++||.|||+||+.||.+|+.+|+.|..|++.+.+.++.++...+.
T Consensus        61 ~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~  113 (121)
T 2d9e_A           61 RYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEK  113 (121)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999888876543
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Back     alignment and structure
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 669
d1eqfa1139 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain 2e-10
d1eqfa2128 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain 3e-10
d3dwya1114 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { 1e-06
d3d7ca1102 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T 2e-06
d1e6ia_111 a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c 3e-06
d1wuma1118 a.29.2.1 (A:715-832) P300/CAF histone acetyltransf 4e-06
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: TAFII250 double bromodomain module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 5   SSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKELKP 61
           S       + LI  N+  YN P     + ++++ +L  +K       + R EK + P
Sbjct: 83  SREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINP 139
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query669
d3dwya1114 CREB-binding protein, CBP {Human (Homo sapiens) [T 98.73
d3d7ca1102 GCN5 {Human (Homo sapiens) [TaxId: 9606]} 98.69
d1eqfa1139 TAFII250 double bromodomain module {Human (Homo sa 98.67
d1e6ia_111 GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta 98.66
d1wuma1118 P300/CAF histone acetyltransferase bromodomain {Hu 98.62
d1eqfa2128 TAFII250 double bromodomain module {Human (Homo sa 98.61
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: CREB-binding protein, CBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=4.5e-09  Score=91.13  Aligned_cols=50  Identities=18%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             ccccHHHHHHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 005930            2 LAISSRAALSDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAG   51 (669)
Q Consensus         2 ~Y~SLEqFe~Df~LI~sNAM~YNs~DTIyyraA~~l~e~akk~fe~Lr~d   51 (669)
                      .|.|+++|++||.|||.||+.||.+|+.+|+.|..|++.+++.++.|.++
T Consensus        63 ~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~  112 (114)
T d3dwya1          63 QYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQS  112 (114)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            69999999999999999999999999999999999999999999887654
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure