Citrus Sinensis ID: 005943
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 668 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SUF9 | 686 | Pentatricopeptide repeat- | yes | no | 0.941 | 0.916 | 0.502 | 0.0 | |
| Q9LFI1 | 768 | Pentatricopeptide repeat- | no | no | 0.938 | 0.816 | 0.317 | 1e-98 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.935 | 0.702 | 0.314 | 1e-96 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.980 | 0.764 | 0.292 | 3e-95 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.952 | 0.748 | 0.324 | 8e-95 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.950 | 0.596 | 0.310 | 1e-93 | |
| Q9SVA5 | 834 | Pentatricopeptide repeat- | no | no | 0.944 | 0.756 | 0.303 | 2e-91 | |
| Q9C507 | 787 | Putative pentatricopeptid | no | no | 0.937 | 0.795 | 0.326 | 1e-90 | |
| Q0WN60 | 970 | Pentatricopeptide repeat- | no | no | 0.961 | 0.661 | 0.290 | 1e-90 | |
| P93005 | 727 | Pentatricopeptide repeat- | no | no | 0.931 | 0.855 | 0.306 | 4e-90 |
| >sp|Q9SUF9|PP305_ARATH Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana GN=PCMP-E100 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/718 (50%), Positives = 474/718 (66%), Gaps = 89/718 (12%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
MDL+ I LRHCG+ ++ K+G+S+ +IK G+SQ++F NN++SMY DF L+DAHK+
Sbjct: 3 MDLKLIAAGLRHCGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKV 62
Query: 61 FDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120
FDEM+ +NIV+WTTMV+ YTS+ +PN AI LY ML+ N FMYSAVLKAC L GD
Sbjct: 63 FDEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGD 122
Query: 121 LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNS 180
+ LG L++ERI +E L D VLMN+++DMYVK G +L + S++ + WN+
Sbjct: 123 IQLGILVYERIGKENLRGDVVLMNSVVDMYVKNG----RLIEANSSFKEILRPSSTSWNT 178
Query: 181 MLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWT---- 236
++SG Y K G +D+ + LF+ MP+ +VVSW
Sbjct: 179 LISG--------------------------YCKAGLMDEAVTLFHRMPQPNVVSWNCLIS 212
Query: 237 --------------------GIIVGCFECSC----------------------------- 247
G+++ F C
Sbjct: 213 GFVDKGSPRALEFLVRMQREGLVLDGFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESS 272
Query: 248 -FTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITL 306
F +SAL+DMYSNC L A +F Q S+ VA+WNSM+SG+++NE+NE A+ L
Sbjct: 273 PFAISALIDMYSNCGSLIYAADVFHQEKLAVNSS---VAVWNSMLSGFLINEENEAALWL 329
Query: 307 LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLY 366
L I+ S +C DSYT + ALK CIN +N R LQVH L+V SGYELDYIVGS L+DL+
Sbjct: 330 LLQIYQSDLCFDSYTLSGALKICINYVNL--RLGLQVHSLVVVSGYELDYIVGSILVDLH 387
Query: 367 ARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS 426
A +GN++ A +LFHRLP KD++A+SGLI GC K G NSLA+ LFR++I D +QFI+S
Sbjct: 388 ANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVS 447
Query: 427 SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER 486
++LKVCS LASL GKQ+H C+K+G+E E +T T+L+DMY+KCGEID+G+ LF M ER
Sbjct: 448 NILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLER 507
Query: 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIF 546
DVVSWTGIIVG GQNGR +EA YF +MI ++PN++TFLG+LSACRH+GL+EEA +
Sbjct: 508 DVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHSGLLEEARSTL 567
Query: 547 TSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNN 606
+MK EYGLEP+LEHYYC+VDLLGQAG F +A +LI +MP +PDKTIW S+L AC TH N
Sbjct: 568 ETMKSEYGLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTIWTSLLTACGTHKN 627
Query: 607 TKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWI 664
LV++IAE+LL P+DPS Y LSN YATLGMWD LSKVR+A KKLG K++GMSWI
Sbjct: 628 AGLVTVIAEKLLKGFPDDPSVYTSLSNAYATLGMWDQLSKVREAAKKLGAKESGMSWI 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (925), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 219/689 (31%), Positives = 361/689 (52%), Gaps = 62/689 (8%)
Query: 3 LRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFD 62
LR + + C RS+ QG+ +H I+ D N++LSMY SL DA ++FD
Sbjct: 67 LRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFD 126
Query: 63 EMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLD 122
M +N+VS+T+++T Y+ N + AIRLY ML+ V P+ F + +++KAC+ S D+
Sbjct: 127 FMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLV-PDQFAFGSIIKACASSSDVG 185
Query: 123 LGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYG----NVALW 178
LG+ +H ++ + + + N L+ MYV+ F+Q S+ + YG ++ W
Sbjct: 186 LGKQLHAQVIKLESSSHLIAQNALIAMYVR--------FNQMSDASRVFYGIPMKDLISW 237
Query: 179 NSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDM----------YL------KCGEI---DD 219
+S+++G Q+ GFE E L+ L +M Y+ C + D
Sbjct: 238 SSIIAGFSQL-------GFEFE--ALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDY 288
Query: 220 GLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAAS 279
G + + ++ I GC +L DMY+ C L AR++FDQ
Sbjct: 289 GSQIHGLCIKSELAG--NAIAGC---------SLCDMYARCGFLNSARRVFDQIER---- 333
Query: 280 AYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRF 339
+ A WN +I+G N +EA+++ S + SSG D+ + S L A + +
Sbjct: 334 --PDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQ-- 389
Query: 340 ALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK-DVVAWSGLIMGCT 398
+Q+H I+ G+ D V ++L+ +Y ++ LF D V+W+ ++ C
Sbjct: 390 GMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACL 449
Query: 399 KHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDI 458
+H LF+ M+ S + + + ++L+ C ++SL+ G QVH + +K G E
Sbjct: 450 QHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQF 509
Query: 459 TLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR 518
LIDMY KCG + +F M RDVVSW+ +IVG Q+G +EA+ F+EM +
Sbjct: 510 IKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAG 569
Query: 519 LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDA 578
++PN +TF+GVL+AC H GLVEE ++ +M+ E+G+ P EH C+VDLL +AG ++A
Sbjct: 570 IEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEA 629
Query: 579 EQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638
E+ I EM +PD +W ++L AC+T N L AE +L P + + +V+L +++A+
Sbjct: 630 ERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASS 689
Query: 639 GMWDSLSKVRKAGKKLGEKK-AGMSWIEV 666
G W++ + +R + KK KK G SWIE+
Sbjct: 690 GNWENAALLRSSMKKHDVKKIPGQSWIEI 718
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 217/690 (31%), Positives = 366/690 (53%), Gaps = 65/690 (9%)
Query: 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIFT-GNNLLSMYADFTSLNDAHKLFDEMARKN 68
L+ + ++ GK +H + K+G D T N L+++Y +K+FD ++ +N
Sbjct: 104 LKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERN 163
Query: 69 IVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACS---LSGDLDLGR 125
VSW +++++ S ++ A+ + ML+ +VEP+ F +V+ ACS + L +G+
Sbjct: 164 QVSWNSLISSLCSFEKWEMALEAFRCMLDE-NVEPSSFTLVSVVTACSNLPMPEGLMMGK 222
Query: 126 LIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYG--NVALWNSMLS 183
+H R K E ++ ++NTL+ MY K G L S ++G ++ WN++LS
Sbjct: 223 QVHAYGLR-KGELNSFIINTLVAMYGKLGKLAS------SKVLLGSFGGRDLVTWNTVLS 275
Query: 184 GGKQVHAFC---------VKRGFEKEDVTLTSLIDM-----YLKCGEIDDGLALFNFMPE 229
Q V G E ++ T++S++ L+ G+ AL N
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN---- 331
Query: 230 RDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNS 289
G + + F SALVDMY NC + R++FD + LWN+
Sbjct: 332 -----------GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD------RKIGLWNA 374
Query: 290 MISGYVLNEQNEEAITLLSHIH-SSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIV 348
MI+GY NE ++EA+ L + S+G+ +S T + AC+ F+ + A +HG +V
Sbjct: 375 MIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEA--IHGFVV 432
Query: 349 TSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYL 408
G + D V + L+D+Y+RLG + A+ +F ++ +D+V W+ +I G + A L
Sbjct: 433 KRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 492
Query: 409 LFRDMINSNQDV-----------NQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKED 457
L M N + V N + ++L C+ L++L +GK++HA+ +K +
Sbjct: 493 LLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDV 552
Query: 458 ITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS 517
++L+DMY KCG + +F +P+++V++W II+ G +G +EAI + M+
Sbjct: 553 AVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQ 612
Query: 518 RLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577
+KPNE+TF+ V +AC H+G+V+E IF MKP+YG+EP +HY C+VDLLG+AG +
Sbjct: 613 GVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKE 672
Query: 578 AEQLIAEMPFKPDKT-IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636
A QL+ MP +K W+S+L A HNN ++ I A+ L+ P S YV+L+N+Y+
Sbjct: 673 AYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYS 732
Query: 637 TLGMWDSLSKVRKAGKKLG-EKKAGMSWIE 665
+ G+WD ++VR+ K+ G K+ G SWIE
Sbjct: 733 SAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (897), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 223/763 (29%), Positives = 365/763 (47%), Gaps = 108/763 (14%)
Query: 4 RRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFD- 62
RR+ L+ C ++QGK +H +I +S D +T +L MYA S +D K+F
Sbjct: 36 RRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYR 95
Query: 63 -EMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSL---- 117
++ R +I W ++++++ N N A+ Y ML +G V P+ + ++KAC
Sbjct: 96 LDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFG-VSPDVSTFPCLVKACVALKNF 154
Query: 118 -----------SGDLDLGRLIHERITREKLEY----------------DTVLMNTLLDMY 150
S +D + + + LEY D V+ N +L+ Y
Sbjct: 155 KGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGY 214
Query: 151 VKCGSLTRKL-------FDQYSNWAASAYGNVALWNS--MLSGGKQVHAFCVKRGFEKED 201
KCG+L + DQ S A + +++ S ++ G Q+H V G + E
Sbjct: 215 AKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEG 274
Query: 202 VTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVG-------------------- 241
SL+ MY KCG DD LF M D V+W +I G
Sbjct: 275 SIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISS 334
Query: 242 ------------------------CFECSCFTL-----------SALVDMYSNCNVLCEA 266
C + C+ + SAL+D Y C + A
Sbjct: 335 GVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMA 394
Query: 267 RKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSAL 326
+ +F Q +S +V ++ +MISGY+ N +++ + + + + T S L
Sbjct: 395 QNIFSQCNSV------DVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSIL 448
Query: 327 KACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKD 386
LL + ++HG I+ G++ +G +ID+YA+ G + A E+F RL K+D
Sbjct: 449 PVIGILLAL--KLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRD 506
Query: 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHA 446
+V+W+ +I C + S A +FR M S + IS+ L C+ L S GK +H
Sbjct: 507 IVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHG 566
Query: 447 FCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKE 506
F +K + + ++LIDMY KCG + + +FK M E+++VSW II CG +G+ K+
Sbjct: 567 FMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKD 626
Query: 507 AIAYFQEMIQ-SRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCM 565
++ F EM++ S ++P++ITFL ++S+C H G V+E F SM +YG++P EHY C+
Sbjct: 627 SLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACV 686
Query: 566 VDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625
VDL G+AG +A + + MPF PD +W ++L AC H N +L + + +L+ P +
Sbjct: 687 VDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNS 746
Query: 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLG-EKKAGMSWIEVS 667
YV++SN +A W+S++KVR K+ +K G SWIE++
Sbjct: 747 GYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEIN 789
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (893), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 224/690 (32%), Positives = 364/690 (52%), Gaps = 54/690 (7%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
MD L+ C + R + GK +H R+I++ + D N+L+S+Y+ A +
Sbjct: 60 MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119
Query: 61 FDEMAR---KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSL 117
F+ M R +++VSW+ M+ Y +N R AI+++ LE G V PN + Y+AV++ACS
Sbjct: 120 FETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV-PNDYCYTAVIRACSN 178
Query: 118 SGDLDLGRLIHERITRE-KLEYDTVLMNTLLDMYVKCGSL---TRKLFDQYSNWAASAYG 173
S + +GR+ + + E D + +L+DM+VK + K+FD+ S
Sbjct: 179 SDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSEL------ 232
Query: 174 NVALWNSMLSGGKQ-------VHAFC--VKRGFEKEDVTLTSLIDMYLKCGEIDDGLALF 224
NV W M++ Q + F V GFE + TL+S+ + C E++
Sbjct: 233 NVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV---FSACAELE------ 283
Query: 225 NFMPERDVVSWT--GIIVGCFECSCFTLSALVDMYSNCNV---LCEARKLFDQYSSWAAS 279
N + + SW +V ECS LVDMY+ C+ + + RK+FD+ +
Sbjct: 284 NLSLGKQLHSWAIRSGLVDDVECS------LVDMYAKCSADGSVDDCRKVFDRMEDHS-- 335
Query: 280 AYGNVALWNSMISGYVLN-EQNEEAITLLSHIHSSGMC-IDSYTFTSALKACINLLNFNS 337
V W ++I+GY+ N EAI L S + + G + +TF+SA KAC NL +
Sbjct: 336 ----VMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD--P 389
Query: 338 RFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGC 397
R QV G G + V +++I ++ + ++ A F L +K++V+++ + G
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449
Query: 398 TKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKED 457
++ A+ L ++ V+ F +S+L + + S+R+G+Q+H+ VK G
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 509
Query: 458 ITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS 517
+LI MY KCG ID +F FM R+V+SWT +I G ++G A + F +MI+
Sbjct: 510 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 569
Query: 518 RLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577
+KPNE+T++ +LSAC H GLV E W F SM ++ ++P +EHY CMVDLL +AG D
Sbjct: 570 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 629
Query: 578 AEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637
A + I MPF+ D +W + L AC H+NT+L + A ++L P +P+ Y+ LSN+YA
Sbjct: 630 AFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 689
Query: 638 LGMWDSLSKVRKAGKKLG-EKKAGMSWIEV 666
G W+ +++R+ K+ K+ G SWIEV
Sbjct: 690 AGKWEESTEMRRKMKERNLVKEGGCSWIEV 719
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 344 bits (883), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 208/669 (31%), Positives = 333/669 (49%), Gaps = 34/669 (5%)
Query: 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNI 69
L C + S++ G+ LH ++K G S D + N L+S+Y +L A +F M++++
Sbjct: 295 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDA 354
Query: 70 VSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHE 129
V++ T++ + A+ L+ M +EP+ ++++ ACS G L G+ +H
Sbjct: 355 VTYNTLINGLSQCGYGEKAMELFKRM-HLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413
Query: 130 RITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQV- 188
T+ + + LL++Y KC + L + + NV LWN ML +
Sbjct: 414 YTTKLGFASNNKIEGALLNLYAKCADIETAL----DYFLETEVENVVLWNVMLVAYGLLD 469
Query: 189 ---HAFCVKRGFEKEDV-----TLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIV 240
++F + R + E++ T S++ ++ G+++ G + + II
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIH-----------SQIIK 518
Query: 241 GCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQN 300
F+ + + S L+DMY+ L A + ++ A +V W +MI+GY +
Sbjct: 519 TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF------AGKDVVSWTTMIAGYTQYNFD 572
Query: 301 EEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGS 360
++A+T + G+ D T+A+ AC L Q+H SG+ D +
Sbjct: 573 DKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE--GQQIHAQACVSGFSSDLPFQN 630
Query: 361 NLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDV 420
L+ LY+R G ++ + F + D +AW+ L+ G + G N A +F M D
Sbjct: 631 ALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDN 690
Query: 421 NQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALF 480
N F S +K S A++++GKQVHA K G++ E +LI MY KCG I D F
Sbjct: 691 NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF 750
Query: 481 KFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVE 540
+ ++ VSW II ++G EA+ F +MI S ++PN +T +GVLSAC H GLV+
Sbjct: 751 LEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVD 810
Query: 541 EAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKA 600
+ F SM EYGL P EHY C+VD+L +AG A++ I EMP KPD +W ++L A
Sbjct: 811 KGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870
Query: 601 CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKK-A 659
C H N ++ A LL PED + YV+LSN+YA WD+ R+ K+ G KK
Sbjct: 871 CVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEP 930
Query: 660 GMSWIEVSS 668
G SWIEV +
Sbjct: 931 GQSWIEVKN 939
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (864), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 227/747 (30%), Positives = 355/747 (47%), Gaps = 116/747 (15%)
Query: 25 LHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKR 84
+H +II +GL D + N L+++Y+ + A K+F++M +N+VSW+TMV+A +
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 85 PNWAIRLYNHMLEYGSVEPNGFMYSAVLKACS-LSGDLDLGR----LIHERITREKLEYD 139
++ ++ PN ++ S+ ++ACS L G GR + + + + D
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGR---GRWMVFQLQSFLVKSGFDRD 182
Query: 140 TVLMNTLLDMYVKCGSL--TRKLFDQYS-----NWAASAYGNVALWNS------------ 180
+ L+D Y+K G++ R +FD W G V + S
Sbjct: 183 VYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME 242
Query: 181 ---------------------MLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDD 219
L GGKQ+HA ++ G E + + LID Y+KCG +
Sbjct: 243 DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIA 302
Query: 220 GLALFNFMPERDVVSWTGIIVG-------------------------CFECS-----CFT 249
LFN MP ++++SWT ++ G + CS C +
Sbjct: 303 AHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCAS 362
Query: 250 LSAL-------------------------VDMYSNCNVLCEARKLFDQYSSWAASAYGNV 284
L AL +DMY+ C+ L +ARK+FD + A +V
Sbjct: 363 LHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIF------AAADV 416
Query: 285 ALWNSMISGYV-LNEQNE--EAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFAL 341
L+N+MI GY L Q E EA+ + + + TF S L+A +L + +
Sbjct: 417 VLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLG--LSK 474
Query: 342 QVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHG 401
Q+HGL+ G LD GS LID+Y+ +K + +F + KD+V W+ + G +
Sbjct: 475 QIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQS 534
Query: 402 LNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLT 461
N A LF ++ S + ++F ++++ LAS++ G++ H +KRG E
Sbjct: 535 ENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITN 594
Query: 462 SLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP 521
+L+DMY KCG +D F RDVV W +I +G K+A+ ++M+ ++P
Sbjct: 595 ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEP 654
Query: 522 NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQL 581
N ITF+GVLSAC HAGLVE+ F M +G+EP EHY CMV LLG+AG + A +L
Sbjct: 655 NYITFVGVLSACSHAGLVEDGLKQFELM-LRFGIEPETEHYVCMVSLLGRAGRLNKAREL 713
Query: 582 IAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMW 641
I +MP KP +W S+L C N +L AE + + P+D + MLSN+YA+ GMW
Sbjct: 714 IEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMW 773
Query: 642 DSLSKVRKAGKKLG-EKKAGMSWIEVS 667
KVR+ K G K+ G SWI ++
Sbjct: 774 TEAKKVRERMKVEGVVKEPGRSWIGIN 800
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 220/673 (32%), Positives = 360/673 (53%), Gaps = 47/673 (6%)
Query: 10 LRHC-GQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKN 68
LR C G R + G +H RIIK G+ D +LL MY +L+DA K+FD M ++
Sbjct: 107 LRACAGSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRD 166
Query: 69 IVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIH 128
+V+W+T+V++ N A+R++ M++ G VEP+ +V++ C+ G L + R +H
Sbjct: 167 LVAWSTLVSSCLENGEVVKALRMFKCMVDDG-VEPDAVTMISVVEGCAELGCLRIARSVH 225
Query: 129 ERITREKLEYDTVLMNTLLDMYVKCGSL--TRKLFDQYSNWAASAYGNVALWNSMLSG-- 184
+ITR+ + D L N+LL MY KCG L + ++F++ A N W +M+S
Sbjct: 226 GQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKI------AKKNAVSWTAMISSYN 279
Query: 185 -----GKQVHAFC--VKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTG 237
K + +F +K G E VTL S++ G I +G ++ F R++
Sbjct: 280 RGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRREL----- 334
Query: 238 IIVGCFECSCFTLS-ALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVL 296
+ + +LS ALV++Y+ C L + + S N+ WNS+IS Y
Sbjct: 335 ------DPNYESLSLALVELYAECGKLSDCETVLRVVSDR------NIVAWNSLISLYAH 382
Query: 297 NEQNEEAITLLSHIHSSGMCIDSYTFTSALKACIN--LLNFNSRFALQVHGLIVTSGYEL 354
+A+ L + + + D++T S++ AC N L+ Q+HG ++ +
Sbjct: 383 RGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGK----QIHGHVIRTDVS- 437
Query: 355 DYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMI 414
D V ++LID+Y++ G+V SA +F+++ + VV W+ ++ G +++G + A LF M
Sbjct: 438 DEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMY 497
Query: 415 NSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEID 474
+S ++N+ +V++ CS + SL +GK VH + G K+ T T+LIDMY KCG+++
Sbjct: 498 HSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL-KDLFTDTALIDMYAKCGDLN 556
Query: 475 DGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR 534
+F+ M R +VSW+ +I G +GR AI+ F +M++S KPNE+ F+ VLSAC
Sbjct: 557 AAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACG 616
Query: 535 HAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIW 594
H+G VEE F MK +G+ P+ EH+ C +DLL ++G +A + I EMPF D ++W
Sbjct: 617 HSGSVEEGKYYFNLMK-SFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVW 675
Query: 595 ASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654
S++ C H ++ I L +D Y +LSN+YA G W+ ++R A K
Sbjct: 676 GSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMKSS 735
Query: 655 GEKK-AGMSWIEV 666
KK G S IE+
Sbjct: 736 NLKKVPGYSAIEI 748
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 224/770 (29%), Positives = 361/770 (46%), Gaps = 128/770 (16%)
Query: 10 LRHCGQRRSIKQGKSLHCRII-KYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKN 68
L+ G+R+ I+ G+ +H + L D +++MYA S +D+ +FD + KN
Sbjct: 91 LQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKN 150
Query: 69 IVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIH 128
+ W ++++Y+ N+ + + + M+ + P+ F Y V+KAC+ D+ +G +H
Sbjct: 151 LFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVH 210
Query: 129 ERITREKLEYDTVLMNTLLDMYVKCGSLTR--KLFDQYSNWAASAYGNVALWNSMLSG-- 184
+ + L D + N L+ Y G +T +LFD N+ WNSM+
Sbjct: 211 GLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPER------NLVSWNSMIRVFS 264
Query: 185 ----------------------------------------------GKQVHAFCVKRGFE 198
GK VH + VK +
Sbjct: 265 DNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLD 324
Query: 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVG----------------- 241
KE V +L+DMY KCG I + +F ++VVSW ++ G
Sbjct: 325 KELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQM 384
Query: 242 --------------------CF---------ECSCFTL-----------SALVDMYSNCN 261
CF E C++L +A V Y+ C
Sbjct: 385 LAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCG 444
Query: 262 VLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHS--SGMCIDS 319
L A+++F S ++ WN++I G+ + N+ ++L +H+ SG+ DS
Sbjct: 445 SLSYAQRVFHGIRSKTVNS------WNALIGGHA--QSNDPRLSLDAHLQMKISGLLPDS 496
Query: 320 YTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELF 379
+T S L AC L + R +VHG I+ + E D V +++ LY G + + LF
Sbjct: 497 FTVCSLLSACSKLKSL--RLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALF 554
Query: 380 HRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLR 439
+ K +V+W+ +I G ++G A +FR M+ + + V CS L SLR
Sbjct: 555 DAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLR 614
Query: 440 RGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCG 499
G++ HA+ +K E + SLIDMY K G I +F + E+ SW +I+G G
Sbjct: 615 LGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYG 674
Query: 500 QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL 559
+G AKEAI F+EM ++ P+++TFLGVL+AC H+GL+ E MK +GL+P+L
Sbjct: 675 IHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNL 734
Query: 560 EHYYCMVDLLGQAGCFDDAEQLIA-EMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLL 618
+HY C++D+LG+AG D A +++A EM + D IW S+L +C H N ++ +A +L
Sbjct: 735 KHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLF 794
Query: 619 ATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG-EKKAGMSWIEVS 667
PE P YV+LSN+YA LG W+ + KVR+ ++ K AG SWIE++
Sbjct: 795 ELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELN 844
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 212/691 (30%), Positives = 343/691 (49%), Gaps = 69/691 (9%)
Query: 6 IVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMA 65
+++ L H Q+R++ G+++H +II+ G S I N L++ YA L AH +F+ +
Sbjct: 17 LLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAII 76
Query: 66 RKNIVSWTTMVTAYTSN---KRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLD 122
K++VSW +++T Y+ N ++L+ M + PN + + + KA S
Sbjct: 77 CKDVVSWNSLITGYSQNGGISSSYTVMQLFREM-RAQDILPNAYTLAGIFKAESSLQSST 135
Query: 123 LGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSML 182
+GR H + + D + +L+ MY K G + D +A N W++M+
Sbjct: 136 VGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVE----DGLKVFAYMPERNTYTWSTMV 191
Query: 183 SGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFN-FMPERDVVS-----WT 236
SG Y G +++ + +FN F+ E++ S +T
Sbjct: 192 SG--------------------------YATRGRVEEAIKVFNLFLREKEEGSDSDYVFT 225
Query: 237 GII--------VGC-FECSCFTL-----------SALVDMYSNCNVLCEARKLFDQYSSW 276
++ VG + C T+ +ALV MYS C L EA K+FD
Sbjct: 226 AVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFD----- 280
Query: 277 AASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFN 336
+S N W++M++GY N ++ EA+ L S + S+G+ YT L AC ++
Sbjct: 281 -SSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLE 339
Query: 337 SRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMG 396
Q+H ++ G+E + L+D+YA+ G + A + F L ++DV W+ LI G
Sbjct: 340 E--GKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISG 397
Query: 397 CTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKE 456
++ N A +L+R M + N ++SVLK CS LA+L GKQVH +K GF E
Sbjct: 398 YVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLE 457
Query: 457 DITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQ 516
++L MY KCG ++DG +F+ P +DVVSW +I G NG+ EA+ F+EM+
Sbjct: 458 VPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLA 517
Query: 517 SRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFD 576
++P+++TF+ ++SAC H G VE W F M + GL+P ++HY CMVDLL +AG
Sbjct: 518 EGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLK 577
Query: 577 DAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636
+A++ I +W +L AC+ H +L E+L+A + S YV LS +Y
Sbjct: 578 EAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYT 637
Query: 637 TLGMWDSLSKVRKAGKKLG-EKKAGMSWIEV 666
LG + +V K + G K+ G SWIE+
Sbjct: 638 ALGRMRDVERVWKHMRANGVSKEVGCSWIEL 668
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 668 | ||||||
| 224063136 | 691 | predicted protein [Populus trichocarpa] | 0.950 | 0.918 | 0.570 | 0.0 | |
| 225459473 | 690 | PREDICTED: pentatricopeptide repeat-cont | 0.949 | 0.918 | 0.556 | 0.0 | |
| 449445246 | 688 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.944 | 0.545 | 0.0 | |
| 449531597 | 680 | PREDICTED: pentatricopeptide repeat-cont | 0.961 | 0.944 | 0.540 | 0.0 | |
| 15236431 | 686 | pentatricopeptide repeat-containing prot | 0.941 | 0.916 | 0.502 | 0.0 | |
| 297813281 | 688 | pentatricopeptide repeat-containing prot | 0.946 | 0.918 | 0.499 | 0.0 | |
| 356518523 | 686 | PREDICTED: pentatricopeptide repeat-cont | 0.974 | 0.948 | 0.512 | 0.0 | |
| 357461615 | 745 | Pentatricopeptide repeat-containing prot | 0.947 | 0.849 | 0.490 | 0.0 | |
| 147801708 | 869 | hypothetical protein VITISV_018600 [Viti | 0.847 | 0.651 | 0.503 | 0.0 | |
| 302141863 | 521 | unnamed protein product [Vitis vinifera] | 0.755 | 0.969 | 0.480 | 1e-131 |
| >gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa] gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/724 (57%), Positives = 506/724 (69%), Gaps = 89/724 (12%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
MDL+ IV A+RHCG+ +++KQGKS H +IK G S +++ NL+SMYADFT L DA+KL
Sbjct: 1 MDLKHIVAAIRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKL 60
Query: 61 FDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120
FDEM KNIV+WTTMV+AYTSN +P AI+LY ML+ S PNGFMYS VLKAC L G+
Sbjct: 61 FDEMPVKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGE 120
Query: 121 LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVALW 178
++LGRLIH+R +RE L+YD VL+N LLDMYVKCG L+ RK+FD+ A N W
Sbjct: 121 IELGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRA-----NSTSW 175
Query: 179 NSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGI 238
N+M+SG Y K G +++ + LFN MP+R+VVSW I
Sbjct: 176 NTMISG--------------------------YFKEGLVEEAVNLFNQMPDRNVVSWNTI 209
Query: 239 I------------------------------------------------VGCF------E 244
I + C+ E
Sbjct: 210 IAGLAENGSSRALQFVCKMHREGIKLDKFTFPCALKTCSYAGFLVAGKQIHCYVLKSGLE 269
Query: 245 CSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAI 304
SCF +SALVDMYSNCN L +A +LFDQYS S ++ LWNSM+SGYV++E+N A+
Sbjct: 270 SSCFAVSALVDMYSNCNGLDDAIRLFDQYSGGTGSICDSLVLWNSMLSGYVVHEKNRAAV 329
Query: 305 TLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLID 364
+++ IH SG +DSYT +SALK CINLLN R +QVH LIVTSG+ELDY+VGS L+D
Sbjct: 330 NMIAQIHHSGASVDSYTLSSALKVCINLLNV--RLGIQVHALIVTSGHELDYVVGSILVD 387
Query: 365 LYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFI 424
LYA+LGN+K A +LFHRLPKKD+VAWSGL+MGC K LNSLA LFRDM+ +V+Q+I
Sbjct: 388 LYAKLGNMKDAFKLFHRLPKKDIVAWSGLLMGCAKMELNSLALSLFRDMVTFGVEVDQYI 447
Query: 425 ISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP 484
+S+VLKVCS LAS+ GKQVHAFC+KRG+E E +T+T+LIDMY KCGE++DGL LF +
Sbjct: 448 VSNVLKVCSSLASIGTGKQVHAFCIKRGYETEQVTITALIDMYSKCGEVEDGLVLFGCVA 507
Query: 485 ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWT 544
+RDVV WTGIIVGC QNGRA EA+ F++M+QS LKPNE+T+LGVL+ACRHAGLV EA T
Sbjct: 508 DRDVVCWTGIIVGCAQNGRANEALEIFRQMVQSGLKPNEVTYLGVLTACRHAGLVVEAQT 567
Query: 545 IFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETH 604
IF +MK ++ LEP LEHYYCMVDLL QAG F + E+LIAEMPFKPDKTIW+SML AC TH
Sbjct: 568 IFGTMKCDHRLEPQLEHYYCMVDLLCQAGYFKEVEKLIAEMPFKPDKTIWSSMLGACGTH 627
Query: 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWI 664
NT LVS IAE LLA P DPS YVMLSN Y TLGMWDSLS+VR+A KKLG K AG SWI
Sbjct: 628 RNTGLVSTIAENLLANCPNDPSIYVMLSNAYGTLGMWDSLSQVREAAKKLGVKAAGTSWI 687
Query: 665 EVSS 668
E+SS
Sbjct: 688 EISS 691
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459473|ref|XP_002284396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/724 (55%), Positives = 488/724 (67%), Gaps = 90/724 (12%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
MDL RIV +R CG+ R+ + G+SLH IIK G+ D+F NNLL+MY D + L DA +L
Sbjct: 1 MDLHRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRL 60
Query: 61 FDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120
FDE +N+ +WTTM++AY+S+ RP+ A++ Y MLE S PNGF+YSAVLKAC L GD
Sbjct: 61 FDETLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGD 120
Query: 121 LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVALW 178
L+ G+LIH R+ R L +DTVLMNTLLDMYVKCGSL+ RK+FD ++++ W
Sbjct: 121 LESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTS------W 174
Query: 179 NSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGI 238
N+M+SG Y K G +++ + LF MPE D VSW I
Sbjct: 175 NTMISG--------------------------YGKEGLMEEAVNLFYQMPEPDTVSWNSI 208
Query: 239 IVG--------------------------CFECS-------------------------- 246
I G F C+
Sbjct: 209 IAGFGCKESLGALRFVCMMHRKGLKLDGFTFSCALKTCGCFQLLVMVKQIHCYVNKSGFG 268
Query: 247 --CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAI 304
CFT SALVD YSNCN L EA K+FD+YS +AS + LWNSM+SGYV+NEQN AI
Sbjct: 269 SCCFTASALVDSYSNCNELDEAIKMFDEYSCCSASILDCLPLWNSMLSGYVVNEQNSAAI 328
Query: 305 TLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLID 364
L+S IHS G +DS+TF SALK CINL NF R LQV GL VTSGYELDY+VGS LID
Sbjct: 329 NLVSQIHSLGAHVDSFTFGSALKVCINLQNF--RLGLQVQGLAVTSGYELDYVVGSILID 386
Query: 365 LYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFI 424
LYA G +K AL LF+RLP+KD+V WS LI CTK GLNSL + LFRDM+N + +V+QFI
Sbjct: 387 LYANDGKIKDALRLFYRLPEKDIVVWSSLISWCTKMGLNSLVFSLFRDMVNLDIEVDQFI 446
Query: 425 ISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP 484
ISSVLK CS L L GKQVH+FCVK G+E E IT+TSLID+Y KCGEI+DGLALF
Sbjct: 447 ISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAKCGEIEDGLALFYCTS 506
Query: 485 ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWT 544
ERD V +TGII+GCGQNGRA EA+ +FQEMI+ LKPNEITFLGVLSACRHAGLVEEAWT
Sbjct: 507 ERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIELGLKPNEITFLGVLSACRHAGLVEEAWT 566
Query: 545 IFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETH 604
IF MK EY +EPH+EHYYC+V+LL QAGCF +AE+LIAEMPF+PD+TIW S+L AC TH
Sbjct: 567 IFKYMKTEYKMEPHIEHYYCIVELLSQAGCFKEAEELIAEMPFEPDQTIWNSLLGACGTH 626
Query: 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWI 664
T+LV+ IAE+LL T PEDPS V LSNVYATL MWD K+R+ KK+G K+AG SWI
Sbjct: 627 KKTELVNFIAERLLTTLPEDPSILVTLSNVYATLEMWDDSRKMREVIKKVGMKEAGKSWI 686
Query: 665 EVSS 668
++ S
Sbjct: 687 QIKS 690
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445246|ref|XP_004140384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/706 (54%), Positives = 491/706 (69%), Gaps = 56/706 (7%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
M + I + LRHC R+ K+G ++H + K+G D+F NNL+SMYA+F ++ DA K+
Sbjct: 1 MYVNIIAKDLRHCATVRAFKRGNAIHAYLRKFGGLNDVFLANNLISMYAEFFNVRDAEKV 60
Query: 61 FDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120
FDEM +NIV+WTTMV+A+T RP AIRLYN M + S PNG+MYSAVLKAC GD
Sbjct: 61 FDEMTDRNIVTWTTMVSAFTDGGRPYEAIRLYNDMPK--SETPNGYMYSAVLKACGFVGD 118
Query: 121 LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTR--KLFDQYS-------NWAASA 171
L LG+LI ERI +KL+ DT+LMN+L+DM+VKCGSL ++F S N S
Sbjct: 119 LGLGKLIQERIYEDKLQADTILMNSLMDMFVKCGSLNDAVEVFHNISRATTTTWNIIVSG 178
Query: 172 YG------------------NVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLK 213
Y NV WNSM++G + +R E S+ M+ +
Sbjct: 179 YSKAGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNGS---QRALE-----FVSM--MHKR 228
Query: 214 CGEIDDGLALFNFMPERDVVSWTGII-VG----------CFECSCFTLSALVDMYSNCNV 262
C ++DD F F + + G++ +G +E SCFTLSAL+DMYSNCN
Sbjct: 229 CIKLDD----FTFPCALKISALHGLLFIGKQVHSYVTKLGYESSCFTLSALIDMYSNCND 284
Query: 263 LCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTF 322
L EA KLFDQ+SS+ AS N+ALWNSM+SGYV+N ++ A+ LLS IH SG +DSYTF
Sbjct: 285 LIEAVKLFDQHSSFNASISDNLALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSYTF 344
Query: 323 TSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRL 382
ALK CINLL+ R LQ+HGLIVT GYELDY+VGS L+DLYA+L N+ AL +FHRL
Sbjct: 345 GGALKVCINLLS--RRVGLQLHGLIVTCGYELDYVVGSILVDLYAKLANIDDALAIFHRL 402
Query: 383 PKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGK 442
P+KD++AWSGLIMGC + GLN LA+ +F+ M+ +++ F+IS++LKVCS LASLR GK
Sbjct: 403 PRKDIIAWSGLIMGCAQIGLNWLAFSMFKGMLELVNEIDHFVISTILKVCSNLASLRSGK 462
Query: 443 QVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNG 502
QVHA CVK G+E E T+TSL+DMY KCGEI+D L LF E+D+VSWTGIIVGCGQNG
Sbjct: 463 QVHALCVKSGYEMEGFTITSLLDMYSKCGEIEDALTLFCCEQEKDIVSWTGIIVGCGQNG 522
Query: 503 RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHY 562
+A EA+ +F EMI+S + PNEITFLGVLSACR+AGLVEEA +IF SMK YGLEPHLEHY
Sbjct: 523 KAAEAVRFFHEMIRSGITPNEITFLGVLSACRYAGLVEEARSIFNSMKSVYGLEPHLEHY 582
Query: 563 YCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622
CMVDLL G ++AE+LIA MPF+P++T W ++L AC T N+TKL++ +A+ LL +P
Sbjct: 583 CCMVDLLASVGLPEEAEKLIANMPFEPNQTTWRTLLGACGTRNDTKLINRVADGLLEATP 642
Query: 623 EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWIEVSS 668
DPS YV LSN YA+LGMW +LSK R+A KK G KKAG+SWIEVSS
Sbjct: 643 NDPSTYVTLSNAYASLGMWHTLSKAREASKKFGIKKAGLSWIEVSS 688
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449531597|ref|XP_004172772.1| PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/698 (54%), Positives = 482/698 (69%), Gaps = 56/698 (8%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
M + I + LRHC R+ K+G ++H + K+G D+F NNL+SMYA+F ++ DA K+
Sbjct: 1 MYVNIIAKDLRHCATVRAFKRGNAIHAYLRKFGGLNDVFLANNLISMYAEFFNVRDAEKV 60
Query: 61 FDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120
FDEM +NIV+WTTMV+A+T RP AIRLYN M + S PNG+MYSAVLKAC GD
Sbjct: 61 FDEMTDRNIVTWTTMVSAFTDGGRPYEAIRLYNDMPK--SETPNGYMYSAVLKACGFVGD 118
Query: 121 LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTR--KLFDQYS-------NWAASA 171
L LG+LI ERI +KL+ DT+LMN+L+DM+VKCGSL ++F S N S
Sbjct: 119 LGLGKLIQERIYEDKLQADTILMNSLMDMFVKCGSLNDAVEVFHNISRATTTTWNIIVSG 178
Query: 172 YG------------------NVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLK 213
Y NV WNSM++G + +R E S+ M+ +
Sbjct: 179 YSKAGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNGS---QRALE-----FVSM--MHKR 228
Query: 214 CGEIDDGLALFNFMPERDVVSWTGII-VG----------CFECSCFTLSALVDMYSNCNV 262
C ++DD F F + + G++ +G +E SCFTLSAL+DMYSNCN
Sbjct: 229 CIKLDD----FTFPCALKISALHGLLFIGKQVHSYVTKLGYESSCFTLSALIDMYSNCND 284
Query: 263 LCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTF 322
L EA KLFDQ+SS+ AS N+ALWNSM+SGYV+N ++ A+ LLS IH SG +DSYTF
Sbjct: 285 LIEAVKLFDQHSSFNASISDNLALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSYTF 344
Query: 323 TSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRL 382
ALK CINLL+ R LQ+HGLIVT GYELDY+VGS L+DLYA+L N+ AL +FHRL
Sbjct: 345 GGALKVCINLLS--RRVGLQLHGLIVTCGYELDYVVGSILVDLYAKLANIDDALAIFHRL 402
Query: 383 PKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGK 442
P+KD++AWSGLIMGC + GLN LA+ +F+ M+ +++ F+IS++LKVCS LASLR GK
Sbjct: 403 PRKDIIAWSGLIMGCAQIGLNWLAFSMFKGMLELVNEIDHFVISTILKVCSNLASLRSGK 462
Query: 443 QVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNG 502
QVHA CVK G+E E T+TSL+DMY KCGEI+D L LF E+D+VSWTGIIVGCGQNG
Sbjct: 463 QVHALCVKSGYEMEGFTITSLLDMYSKCGEIEDALTLFCCEQEKDIVSWTGIIVGCGQNG 522
Query: 503 RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHY 562
+A EA+ +F EMI+S + PNEITFLGVLSACR+AGLVEEA +IF SMK YGLEPHLEHY
Sbjct: 523 KAAEAVRFFHEMIRSGITPNEITFLGVLSACRYAGLVEEARSIFNSMKSVYGLEPHLEHY 582
Query: 563 YCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622
CMVDLL G ++AE+LIA MPF+P++T W ++L AC T N+TKL++ +A+ LL +P
Sbjct: 583 CCMVDLLASVGLPEEAEKLIANMPFEPNQTTWRTLLGACGTRNDTKLINRVADGLLEATP 642
Query: 623 EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAG 660
DPS YV LSN YA+LGMW +LSK R+A KK G KK G
Sbjct: 643 NDPSTYVTLSNAYASLGMWHTLSKAREASKKFGIKKPG 680
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236431|ref|NP_192561.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75208454|sp|Q9SUF9.1|PP305_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g08210 gi|5262194|emb|CAB45791.1| putative protein [Arabidopsis thaliana] gi|7267461|emb|CAB81157.1| putative protein [Arabidopsis thaliana] gi|332657209|gb|AEE82609.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/718 (50%), Positives = 474/718 (66%), Gaps = 89/718 (12%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
MDL+ I LRHCG+ ++ K+G+S+ +IK G+SQ++F NN++SMY DF L+DAHK+
Sbjct: 3 MDLKLIAAGLRHCGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKV 62
Query: 61 FDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120
FDEM+ +NIV+WTTMV+ YTS+ +PN AI LY ML+ N FMYSAVLKAC L GD
Sbjct: 63 FDEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGD 122
Query: 121 LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNS 180
+ LG L++ERI +E L D VLMN+++DMYVK G +L + S++ + WN+
Sbjct: 123 IQLGILVYERIGKENLRGDVVLMNSVVDMYVKNG----RLIEANSSFKEILRPSSTSWNT 178
Query: 181 MLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWT---- 236
++SG Y K G +D+ + LF+ MP+ +VVSW
Sbjct: 179 LISG--------------------------YCKAGLMDEAVTLFHRMPQPNVVSWNCLIS 212
Query: 237 --------------------GIIVGCFECSC----------------------------- 247
G+++ F C
Sbjct: 213 GFVDKGSPRALEFLVRMQREGLVLDGFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESS 272
Query: 248 -FTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITL 306
F +SAL+DMYSNC L A +F Q S+ VA+WNSM+SG+++NE+NE A+ L
Sbjct: 273 PFAISALIDMYSNCGSLIYAADVFHQEKLAVNSS---VAVWNSMLSGFLINEENEAALWL 329
Query: 307 LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLY 366
L I+ S +C DSYT + ALK CIN +N R LQVH L+V SGYELDYIVGS L+DL+
Sbjct: 330 LLQIYQSDLCFDSYTLSGALKICINYVNL--RLGLQVHSLVVVSGYELDYIVGSILVDLH 387
Query: 367 ARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS 426
A +GN++ A +LFHRLP KD++A+SGLI GC K G NSLA+ LFR++I D +QFI+S
Sbjct: 388 ANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVS 447
Query: 427 SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER 486
++LKVCS LASL GKQ+H C+K+G+E E +T T+L+DMY+KCGEID+G+ LF M ER
Sbjct: 448 NILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLER 507
Query: 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIF 546
DVVSWTGIIVG GQNGR +EA YF +MI ++PN++TFLG+LSACRH+GL+EEA +
Sbjct: 508 DVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHSGLLEEARSTL 567
Query: 547 TSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNN 606
+MK EYGLEP+LEHYYC+VDLLGQAG F +A +LI +MP +PDKTIW S+L AC TH N
Sbjct: 568 ETMKSEYGLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTIWTSLLTACGTHKN 627
Query: 607 TKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWI 664
LV++IAE+LL P+DPS Y LSN YATLGMWD LSKVR+A KKLG K++GMSWI
Sbjct: 628 AGLVTVIAEKLLKGFPDDPSVYTSLSNAYATLGMWDQLSKVREAAKKLGAKESGMSWI 685
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297813281|ref|XP_002874524.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297320361|gb|EFH50783.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/721 (49%), Positives = 477/721 (66%), Gaps = 89/721 (12%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
MDL+ I LRHCG+ ++ K+G+S+ I+K G+SQ++F NN++SMY DF L+DAHK+
Sbjct: 3 MDLKLIAAGLRHCGKIQAFKRGESIQAHIVKQGISQNVFLANNVISMYVDFRLLSDAHKV 62
Query: 61 FDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120
FDEM +NIV+WTTMV+ YT + +P+ AI LY M+E N F+YSAVLKAC L GD
Sbjct: 63 FDEMTERNIVTWTTMVSGYTCDGKPSKAIELYRRMVESQEEAANEFIYSAVLKACGLVGD 122
Query: 121 LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNS 180
+ LG ++ERI +E L+ D VLMN+++DM+VK G L+ + S++ N WN+
Sbjct: 123 IQLGSFVYERIGKENLKGDVVLMNSVVDMFVKNGRLS----EANSSFKEILRPNSTSWNT 178
Query: 181 MLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIV 240
++SG Y K G +++ ++LFN +P+ ++VSW +I
Sbjct: 179 LISG--------------------------YCKAGMVEEAVSLFNRIPQPNIVSWNCLIS 212
Query: 241 -------------------------------------------------GC-----FECS 246
GC E S
Sbjct: 213 GFVDKGSPRALEFLVRMQREGLVLDGFALPCGLKACSFGGLLTMGKQLHGCVVKSGLESS 272
Query: 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITL 306
F LSAL+DMYSNC L +A +F Q + VA+WNSM+SG+++NE+NE A+ L
Sbjct: 273 PFALSALIDMYSNCGSLSDAADVFHQEK---PALCNTVAVWNSMLSGFLINEENEAALGL 329
Query: 307 LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLY 366
L ++ S +C DSYT + ALK CINL+N R LQVH L+V SGYELDYIVGS L+DL+
Sbjct: 330 LLLLYKSDLCFDSYTLSGALKICINLVNL--RLGLQVHSLVVVSGYELDYIVGSILVDLH 387
Query: 367 ARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS 426
A +GN++ A +LFHRLP KD++A+SGLI GC K G NSLA+ LFR++I D +QFI+S
Sbjct: 388 ANVGNIQEAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVS 447
Query: 427 SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER 486
S+LKVCS LASL GKQ+H C+K+G++ E +T T+L DMY+KCGEID+ + LF M ER
Sbjct: 448 SILKVCSSLASLGCGKQIHGLCIKKGYQSEPVTATALGDMYVKCGEIDNSVVLFDGMLER 507
Query: 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIF 546
DVVSWTGIIVG GQNGR +EA YF +MI S ++PNE+TFLG+LSACRH+GL+EEA +I
Sbjct: 508 DVVSWTGIIVGFGQNGRVEEAFQYFHKMINSEIEPNEVTFLGLLSACRHSGLLEEARSIL 567
Query: 547 TSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNN 606
+MK EYGLEP+LEHYYC+VDLLGQAG F +AE+LI +MP +PDKTIW S+L AC TH N
Sbjct: 568 ETMKCEYGLEPYLEHYYCVVDLLGQAGRFQEAEELIKKMPLEPDKTIWMSLLTACGTHKN 627
Query: 607 TKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWIEV 666
L+++IAE+LL PEDPS Y LSN YATLGMWD LS+VR+A KKLG K++GMSWIE
Sbjct: 628 AGLITVIAEKLLKAFPEDPSLYTSLSNAYATLGMWDQLSEVREAAKKLGAKESGMSWIEF 687
Query: 667 S 667
+
Sbjct: 688 A 688
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518523|ref|XP_003527928.1| PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/703 (51%), Positives = 476/703 (67%), Gaps = 52/703 (7%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
MDL +I ALR CG+ ++IK KSLH IIK GLS IF N+++S+YA + +DA L
Sbjct: 1 MDLNQIQLALRCCGRFQAIKHAKSLHSLIIKLGLSNHIFLLNSIISVYAKCSRFDDARTL 60
Query: 61 FDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120
FDEM +NIVS+TTMV+A+T++ RP+ A+ LYNHMLE +V+PN F+YSAVLKAC L GD
Sbjct: 61 FDEMPHRNIVSFTTMVSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGD 120
Query: 121 LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSL--TRKLFDQYSNWAASAYGNVAL- 177
++LG L+H+ ++ +LE+DTVLMN LLDMYVKCGSL +++F + ++++ + L
Sbjct: 121 VELGMLVHQHVSEARLEFDTVLMNALLDMYVKCGSLMDAKRVFHEIPCKNSTSWNTLILG 180
Query: 178 ------------------------WNSMLSG--------GKQVHAFCVKRGFEKEDVTLT 205
WNS+++G Q + +G + + T
Sbjct: 181 HAKQGLMRDAFNLFDQMPEPDLVSWNSIIAGLADNASPHALQFLSMMHGKGLKLDAFTFP 240
Query: 206 SLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCE 265
+ GE+ G + II ECSC+ +S+L+DMYSNC +L E
Sbjct: 241 CALKACGLLGELTMGRQIH-----------CCIIKSGLECSCYCISSLIDMYSNCKLLDE 289
Query: 266 ARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSA 325
A K+FD+ S A S +A+WNSM+SGYV N A+ +++ +H SG DSYTF+ A
Sbjct: 290 AMKIFDKNSPLAES----LAVWNSMLSGYVANGDWWRALGMIACMHHSGAQFDSYTFSIA 345
Query: 326 LKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK 385
LK CI N R A QVHGLI+T GYELD++VGS LIDLYA+ GN+ SAL LF RLP K
Sbjct: 346 LKVCIYFDNL--RLASQVHGLIITRGYELDHVVGSILIDLYAKQGNINSALRLFERLPNK 403
Query: 386 DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVH 445
DVVAWS LI+GC + GL +L + LF DM++ + +++ F++S VLKV S LASL+ GKQ+H
Sbjct: 404 DVVAWSSLIVGCARLGLGTLVFSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIH 463
Query: 446 AFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAK 505
+FC+K+G+E E + T+L DMY KCGEI+D LALF + E D +SWTGIIVGC QNGRA
Sbjct: 464 SFCLKKGYESERVITTALTDMYAKCGEIEDALALFDCLYEIDTMSWTGIIVGCAQNGRAD 523
Query: 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCM 565
+AI+ +MI+S KPN+IT LGVL+ACRHAGLVEEAWTIF S++ E+GL P EHY CM
Sbjct: 524 KAISILHKMIESGTKPNKITILGVLTACRHAGLVEEAWTIFKSIETEHGLTPCPEHYNCM 583
Query: 566 VDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625
VD+ +AG F +A LI +MPFKPDKTIW S+L AC T+ N L +I+AE LLATSPED
Sbjct: 584 VDIFAKAGRFKEARNLINDMPFKPDKTIWCSLLDACGTYKNRHLANIVAEHLLATSPEDA 643
Query: 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWIEVSS 668
S Y+MLSNVYA+LGMWD+LSKVR+A +K+G K AG SWIE+ S
Sbjct: 644 SVYIMLSNVYASLGMWDNLSKVREAVRKVGIKGAGKSWIEIFS 686
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/720 (49%), Positives = 463/720 (64%), Gaps = 87/720 (12%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
MDL I A R+C + RSIK KSLH IIK G IF NN++S+Y+ +S+ DA +
Sbjct: 1 MDLNHIQIAFRYCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNM 60
Query: 61 FDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120
FDEM +NIVSWTTMV+ T++ P+ A+ LYN M+E +PN F+YSAVLKAC L +
Sbjct: 61 FDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRN 120
Query: 121 LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNS 180
++LG+++H I + KL+ D VLMN LLDMYVKCGSL D + N WN+
Sbjct: 121 VELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLR----DAQRVFCEIPCKNATSWNT 176
Query: 181 MLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIV 240
++ G Y K G IDD + LF+ MPE D+VSW II
Sbjct: 177 LILG--------------------------YAKQGLIDDAMKLFDKMPEPDIVSWNSIIA 210
Query: 241 ------------------------------------GC------------------FECS 246
GC FE S
Sbjct: 211 GLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESS 270
Query: 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITL 306
C+ +SAL+DMYS+C +L EA K+FDQY +S ++ALWNSM+SG+V+N EA+++
Sbjct: 271 CYCISALIDMYSSCKLLSEATKIFDQYFR-NSSVSESLALWNSMLSGHVVNGDYVEALSM 329
Query: 307 LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLY 366
+SH+H SG+ D YTF+ LK C+N N + A QVHG ++TSGYELD +VGS LID+Y
Sbjct: 330 ISHMHRSGVRFDFYTFSIVLKICMNFDNLS--LASQVHGFVITSGYELDCVVGSILIDIY 387
Query: 367 ARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS 426
A+ G++ +AL LF RLP KDVVAWS LI GC + G + LA+ LF DMI+ ++ F+IS
Sbjct: 388 AKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVIS 447
Query: 427 SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER 486
VLK CS LAS + GKQVH+ C+K+G+E E + T+LIDMY KCG+I+D L+LF + E
Sbjct: 448 IVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEI 507
Query: 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIF 546
D +SWT IIVGC QNGRA+EAI+ +MI+S KPN+IT LGVL+ACRH+GLVEEAW +F
Sbjct: 508 DTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTACRHSGLVEEAWDVF 567
Query: 547 TSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNN 606
S++ +GL P EHY CMVD+LGQAG F++A +LI+EMPFKPDKTIW+S+L AC T+ N
Sbjct: 568 NSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKN 627
Query: 607 TKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWIEV 666
L +I+AE LLATSPED S Y+MLSNVYA LGMWDS+SKVR+ KK+G+K+AG + E+
Sbjct: 628 RDLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSVSKVRETVKKIGKKRAGKIFYEI 687
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147801708|emb|CAN65641.1| hypothetical protein VITISV_018600 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/705 (50%), Positives = 430/705 (60%), Gaps = 139/705 (19%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
MDL RIV +R CG+ R+ + G+SLH IIK G+ D+F NNLL+MY D + L DA +L
Sbjct: 1 MDLHRIVSVIRQCGRXRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRL 60
Query: 61 FDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120
FDE +N+ +WTTM++AY+S+ RP+ A++ Y MLE S PNGF+YSAVLKAC L GD
Sbjct: 61 FDETLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGD 120
Query: 121 LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVALW 178
L+ G+LIH R+ R L +DTVLMNTLLDMYVKCGSL+ RK+FD ++++ W
Sbjct: 121 LESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTS------W 174
Query: 179 NSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGI 238
N+M+SG Y K G +++ + LF MPE D VSW I
Sbjct: 175 NTMISG--------------------------YGKEGLMEEAVNLFYQMPEPDTVSWNSI 208
Query: 239 IVG--------------------------CFECS-------------------------- 246
I G F C+
Sbjct: 209 IAGFGCKESLGALRFVCMMHRKGLKLDGFTFSCALKTCGCFQLLVMVKQIHCYVNKSGFG 268
Query: 247 --CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAI 304
CFT SALVD YSNCN L EA K+FD+YS +AS + LWNSM+SGYV+NEQN AI
Sbjct: 269 SCCFTASALVDSYSNCNELDEAIKMFDEYSCCSASILDCLPLWNSMLSGYVVNEQNSAAI 328
Query: 305 TLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLID 364
L+S IHS G +DSYTF SALK CINL NF R LQV GL VTSGYELDY+VGS LID
Sbjct: 329 NLVSQIHSLGARVDSYTFGSALKVCINLQNF--RLGLQVQGLAVTSGYELDYVVGSILID 386
Query: 365 LYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFI 424
LYA G +K AL LFHRLP+KD+V WS LI TK GLNSL + LFRDM+N + +V+QFI
Sbjct: 387 LYANDGKIKDALRLFHRLPEKDIVVWSSLISWYTKMGLNSLVFSLFRDMVNLDIEVDQFI 446
Query: 425 ISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP 484
ISSVLK CS L L GKQVH+FCVK G+E E IT+TSLID+Y KCGEI+DGLALF
Sbjct: 447 ISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAKCGEIEDGLALFYCTS 506
Query: 485 ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWT 544
ERD V +TGII+GCGQNGRA EA+ +FQEMI+ LKPNEITFL
Sbjct: 507 ERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIELGLKPNEITFL----------------- 549
Query: 545 IFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETH 604
+AE+LIAEMPF+PD+TIW S+L AC TH
Sbjct: 550 --------------------------------EAEELIAEMPFEPDQTIWNSLLGACGTH 577
Query: 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRK 649
T+LV+ IAE+LL T PEDPS V LSNVYATL MWD K+R+
Sbjct: 578 KKTELVNFIAERLLTTLPEDPSILVTLSNVYATLEMWDDSRKMRE 622
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141863|emb|CBI19066.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 273/568 (48%), Positives = 346/568 (60%), Gaps = 63/568 (11%)
Query: 110 AVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSL--TRKLFDQYSNW 167
+V++ C GR +H I + + D N LL MYV L R+LFD+
Sbjct: 8 SVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDE---- 63
Query: 168 AASAYGNVALWNSMLSG----GKQVHA--FCVKRGFEKEDVTLTSLIDMYLK-CGEIDDG 220
+ NVA W +M+S G+ A F V+ K + L LK CG + D
Sbjct: 64 --TLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGD- 120
Query: 221 LALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASA 280
L + R + G ++ L+DMY C L ARK+FD ++++
Sbjct: 121 LESGKLIHGRVFRANLGF-------DTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTS 173
Query: 281 YGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFA 340
WN+MISGY EEA+ L + + +++NS
Sbjct: 174 ------WNTMISGYGKEGLMEEAVNLFYQMPEP-----------------DTVSWNS--- 207
Query: 341 LQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKH 400
+ +G+ + LIDLYA G +K AL LF+RLP+KD+V WS LI CTK
Sbjct: 208 -------IIAGFGI-------LIDLYANDGKIKDALRLFYRLPEKDIVVWSSLISWCTKM 253
Query: 401 GLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITL 460
GLNSL + LFRDM+N + +V+QFIISSVLK CS L L GKQVH+FCVK G+E E IT+
Sbjct: 254 GLNSLVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITV 313
Query: 461 TSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK 520
TSLID+Y KCGEI+DGLALF ERD V +TGII+GCGQNGRA EA+ +FQEMI+ LK
Sbjct: 314 TSLIDLYAKCGEIEDGLALFYCTSERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIELGLK 373
Query: 521 PNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQ 580
PNEITFLGVLSACRHAGLVEEAWTIF MK EY +EPH+EHYYC+V+LL QAGCF +AE+
Sbjct: 374 PNEITFLGVLSACRHAGLVEEAWTIFKYMKTEYKMEPHIEHYYCIVELLSQAGCFKEAEE 433
Query: 581 LIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640
LIAEMPF+PD+TIW S+L AC TH T+LV+ IAE+LL T PEDPS V LSNVYATL M
Sbjct: 434 LIAEMPFEPDQTIWNSLLGACGTHKKTELVNFIAERLLTTLPEDPSILVTLSNVYATLEM 493
Query: 641 WDSLSKVRKAGKKLGEKKAGMSWIEVSS 668
WD K+R+ KK+G K+AG SWI++ S
Sbjct: 494 WDDSRKMREVIKKVGMKEAGKSWIQIKS 521
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 668 | ||||||
| TAIR|locus:2132452 | 686 | AT4G08210 "AT4G08210" [Arabido | 0.778 | 0.758 | 0.504 | 3.7e-135 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.886 | 0.709 | 0.338 | 7.5e-89 | |
| TAIR|locus:2083961 | 768 | AT3G53360 "AT3G53360" [Arabido | 0.958 | 0.833 | 0.310 | 1.6e-88 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.925 | 0.601 | 0.325 | 2e-88 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.950 | 0.747 | 0.327 | 1.8e-87 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.908 | 0.682 | 0.310 | 4.3e-86 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.941 | 0.648 | 0.311 | 1.8e-85 | |
| TAIR|locus:2007116 | 787 | AT1G69350 "AT1G69350" [Arabido | 0.905 | 0.768 | 0.324 | 4.9e-85 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.579 | 0.522 | 0.365 | 1.3e-84 | |
| TAIR|locus:2057630 | 727 | AT2G33680 "AT2G33680" [Arabido | 0.953 | 0.876 | 0.310 | 2.4e-83 |
| TAIR|locus:2132452 AT4G08210 "AT4G08210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
Identities = 278/551 (50%), Positives = 361/551 (65%)
Query: 124 GRLIHERIT-REKLEYDTVLMNTLLDMYVKCGSLTRKLFDQ-YSNWAASAYGNVALWNSM 181
GRLI + +E L + NTL+ Y K G L D+ + + NV WN +
Sbjct: 156 GRLIEANSSFKEILRPSSTSWNTLISGYCKAG-----LMDEAVTLFHRMPQPNVVSWNCL 210
Query: 182 LSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLAL--------FNFMPERDVV 233
+SG F V +G + L L+ M + G + DG AL F +
Sbjct: 211 ISG------F-VDKGSPR---ALEFLVRMQRE-GLVLDGFALPCGLKACSFGGLLTMGKQ 259
Query: 234 SWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISG 293
++ E S F +SAL+DMYSNC L A +F Q A ++ +VA+WNSM+SG
Sbjct: 260 LHCCVVKSGLESSPFAISALIDMYSNCGSLIYAADVFHQ-EKLAVNS--SVAVWNSMLSG 316
Query: 294 YVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYE 353
+++NE+NE A+ LL I+ S +C DSYT + ALK CIN +N R LQVH L+V SGYE
Sbjct: 317 FLINEENEAALWLLLQIYQSDLCFDSYTLSGALKICINYVNL--RLGLQVHSLVVVSGYE 374
Query: 354 LDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDM 413
LDYIVGS L+DL+A +GN++ A +LFHRLP KD++A+SGLI GC K G NSLA+ LFR++
Sbjct: 375 LDYIVGSILVDLHANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFREL 434
Query: 414 INSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEI 473
I D +QFI+S++LKVCS LASL GKQ+H C+K+G+E E +T T+L+DMY+KCGEI
Sbjct: 435 IKLGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEI 494
Query: 474 DDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSAC 533
D+G+ LF M ERDVVSWTGIIVG GQNGR +EA YF +MI ++PN++TFLG+LSAC
Sbjct: 495 DNGVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSAC 554
Query: 534 RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTI 593
RH+GL+EEA + +MK EYGLEP+LEHYYC+VDLLGQAG F +A +LI +MP +PDKTI
Sbjct: 555 RHSGLLEEARSTLETMKSEYGLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTI 614
Query: 594 WASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSXXXXXXXX 653
W S+L AC TH N LV++IAE+LL P+DPS Y LSN YATLGMWD LS
Sbjct: 615 WTSLLTACGTHKNAGLVTVIAEKLLKGFPDDPSVYTSLSNAYATLGMWDQLSKVREAAKK 674
Query: 654 XXXXXXXMSWI 664
MSWI
Sbjct: 675 LGAKESGMSWI 685
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
Identities = 210/621 (33%), Positives = 328/621 (52%)
Query: 29 IIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWA 88
++K G +D++ G L+ Y +++ A +FD + K+ V+WTTM++ R +
Sbjct: 174 LVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVS 233
Query: 89 IRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLD 148
++L+ ++E +V P+G++ S VL ACS+ L+ G+ IH I R LE D LMN L+D
Sbjct: 234 LQLFYQLME-DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLID 292
Query: 149 MYVKCGSL--TRKLFDQYSNWAASAYGNVALWNSMLSGGKQ--VHAFCVKRGFEKEDVTL 204
YVKCG + KLF+ N N+ W ++LSG KQ +H ++ L
Sbjct: 293 SYVKCGRVIAAHKLFNGMPN------KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGL 346
Query: 205 TSLIDMYLKCGEIDDGLALFNFMP-ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVL 263
DMY C I A + + V ++T I + ++L+DMY+ C+ L
Sbjct: 347 KP--DMYA-CSSILTSCASLHALGFGTQVHAYT--IKANLGNDSYVTNSLIDMYAKCDCL 401
Query: 264 CEARKLFDQYSSWAASAYGNVALWNSMISGYV-LNEQNE--EAITLLSHIHSSGMCIDSY 320
+ARK+FD +++ +V L+N+MI GY L Q E EA+ + + +
Sbjct: 402 TDARKVFDIFAA------ADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLL 455
Query: 321 TFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFH 380
TF S L+A +L + + Q+HGL+ G LD GS LID+Y+ +K + +F
Sbjct: 456 TFVSLLRASASLTSLG--LSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFD 513
Query: 381 RLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRR 440
+ KD+V W+ + G + N A LF ++ S + ++F ++++ LAS++
Sbjct: 514 EMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQL 573
Query: 441 GKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQ 500
G++ H +KRG E +L+DMY KCG +D F RDVV W +I
Sbjct: 574 GQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYAN 633
Query: 501 NGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLE 560
+G K+A+ ++M+ ++PN ITF+GVLSAC HAGLVE+ F M +G+EP E
Sbjct: 634 HGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFGIEPETE 692
Query: 561 HYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLAT 620
HY CMV LLG+AG + A +LI +MP KP +W S+L C N +L AE + +
Sbjct: 693 HYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILS 752
Query: 621 SPEDPSKYVMLSNVYATLGMW 641
P+D + MLSN+YA+ GMW
Sbjct: 753 DPKDSGSFTMLSNIYASKGMW 773
|
|
| TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 210/676 (31%), Positives = 352/676 (52%)
Query: 3 LRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFD 62
LR + + C RS+ QG+ +H I+ D N++LSMY SL DA ++FD
Sbjct: 67 LRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFD 126
Query: 63 EMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLD 122
M +N+VS+T+++T Y+ N + AIRLY ML+ V P+ F + +++KAC+ S D+
Sbjct: 127 FMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLV-PDQFAFGSIIKACASSSDVG 185
Query: 123 LGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYG----NVALW 178
LG+ +H ++ + + + N L+ MYV+ F+Q S+ + YG ++ W
Sbjct: 186 LGKQLHAQVIKLESSSHLIAQNALIAMYVR--------FNQMSDASRVFYGIPMKDLISW 237
Query: 179 NSMLSGGKQVHAFCVKRGFEKEDVT-LTSLIDM-YLKCGEIDDGLAL--FNFMPERDVVS 234
+S+++G Q+ GFE E ++ L ++ E G +L + + D S
Sbjct: 238 SSIIAGFSQL-------GFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGS 290
Query: 235 WT-GIIVGC-FECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMIS 292
G+ + + +L DMY+ C L AR++FDQ + A WN +I+
Sbjct: 291 QIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIER------PDTASWNVIIA 344
Query: 293 GYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGY 352
G N +EA+++ S + SSG D+ + S L A + + +Q+H I+ G+
Sbjct: 345 GLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQ--GMQIHSYIIKWGF 402
Query: 353 ELDYIVGSNLIDLYARLGNVKSALELFHRLPKK-DVVAWSGLIMGCTKHGLNSLAYLLFR 411
D V ++L+ +Y ++ LF D V+W+ ++ C +H LF+
Sbjct: 403 LADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFK 462
Query: 412 DMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG 471
M+ S + + + ++L+ C ++SL+ G QVH + +K G E LIDMY KCG
Sbjct: 463 LMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCG 522
Query: 472 EIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS 531
+ +F M RDVVSW+ +IVG Q+G +EA+ F+EM + ++PN +TF+GVL+
Sbjct: 523 SLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLT 582
Query: 532 ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDK 591
AC H GLVEE ++ +M+ E+G+ P EH C+VDLL +AG ++AE+ I EM +PD
Sbjct: 583 ACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDV 642
Query: 592 TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSXXXXXX 651
+W ++L AC+T N L AE +L P + + +V+L +++A+ G W++ +
Sbjct: 643 VVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSM 702
Query: 652 XXXXXXXX-XMSWIEV 666
SWIE+
Sbjct: 703 KKHDVKKIPGQSWIEI 718
|
|
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 215/660 (32%), Positives = 339/660 (51%)
Query: 22 GKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTS 81
G +H IK GL+ +I+ G++L+SMY+ + A K+F+ + KN V W M+ Y
Sbjct: 346 GLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAH 405
Query: 82 NKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTV 141
N + + L+ M G + F ++++L C+ S DL++G H I ++KL +
Sbjct: 406 NGESHKVMELFMDMKSSG-YNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLF 464
Query: 142 LMNTLLDMYVKCGSL--TRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEK 199
+ N L+DMY KCG+L R++F++ + NV WN+++ G V E
Sbjct: 465 VGNALVDMYAKCGALEDARQIFERMCD-----RDNVT-WNTII--GSYVQD-------EN 509
Query: 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVS--WTGIIVGCFECSC------FTLS 251
E M L CG + DG L + + V + G V C C T S
Sbjct: 510 ESEAFDLFKRMNL-CGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGS 568
Query: 252 ALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIH 311
+L+DMYS C ++ +ARK+F W+ V N++I+GY N EEA+ L +
Sbjct: 569 SLIDMYSKCGIIKDARKVFSSLPEWS------VVSMNALIAGYSQNNL-EEAVVLFQEML 621
Query: 312 SSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGY--ELDYIVGSNLIDLYARL 369
+ G+ TF + ++AC + Q HG I G+ E +Y+ G +L+ +Y
Sbjct: 622 TRGVNPSEITFATIVEACHKPESLT--LGTQFHGQITKRGFSSEGEYL-GISLLGMYMNS 678
Query: 370 GNVKSALELFHRLPK-KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSV 428
+ A LF L K +V W+G++ G +++G A +++M + +Q +V
Sbjct: 679 RGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTV 738
Query: 429 LKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER-D 487
L+VCS L+SLR G+ +H+ + +++T +LIDMY KCG++ +F M R +
Sbjct: 739 LRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSN 798
Query: 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFT 547
VVSW +I G +NG A++A+ F M QS + P+EITFLGVL+AC HAG V + IF
Sbjct: 799 VVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFE 858
Query: 548 SMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNT 607
M +YG+E ++H CMVDLLG+ G +A+ I KPD +W+S+L AC H +
Sbjct: 859 MMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDD 918
Query: 608 KLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSXXXXXXXXXXXXXX-XMSWIEV 666
I AE+L+ P++ S YV+LSN+YA+ G W+ + SWI+V
Sbjct: 919 IRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDV 978
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 226/691 (32%), Positives = 359/691 (51%)
Query: 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKL 60
MD L+ C + R + GK +H R+I++ + D N+L+S+Y+ A +
Sbjct: 60 MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119
Query: 61 FDEMAR---KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSL 117
F+ M R +++VSW+ M+ Y +N R AI+++ LE G V PN + Y+AV++ACS
Sbjct: 120 FETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV-PNDYCYTAVIRACSN 178
Query: 118 SGDLDLGRLIHERITRE-KLEYDTVLMNTLLDMYVKC-GSLTR--KLFDQYSNWAASAYG 173
S + +GR+ + + E D + +L+DM+VK S K+FD+ S
Sbjct: 179 SDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSEL------ 232
Query: 174 NVALWNSMLSGGKQ-------VHAFC--VKRGFEKEDVTLTSLIDMYLKCGEIDDGLALF 224
NV W M++ Q + F V GFE + TL+S+ + C E+++ L+L
Sbjct: 233 NVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV---FSACAELEN-LSL- 287
Query: 225 NFMPERDVVSWT--GIIVGCFECSCFTLSALVDMYSNCNV---LCEARKLFDQYSSWAAS 279
+ + SW +V ECS LVDMY+ C+ + + RK+FD+ +
Sbjct: 288 ----GKQLHSWAIRSGLVDDVECS------LVDMYAKCSADGSVDDCRKVFDRMEDHS-- 335
Query: 280 AYGNVALWNSMISGYVLN-EQNEEAITLLSHIHSSGMCIDS-YTFTSALKACINLLNFNS 337
V W ++I+GY+ N EAI L S + + G + +TF+SA KAC NL +
Sbjct: 336 ----VMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD--P 389
Query: 338 RFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGC 397
R QV G G + V +++I ++ + ++ A F L +K++V+++ + G
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDG- 448
Query: 398 TKHGLN-SLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKE 456
T LN A+ L ++ V+ F +S+L + + S+R+G+Q+H+ VK G
Sbjct: 449 TCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCN 508
Query: 457 DITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQ 516
+LI MY KCG ID +F FM R+V+SWT +I G ++G A + F +MI+
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIE 568
Query: 517 SRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFD 576
+KPNE+T++ +LSAC H GLV E W F SM ++ ++P +EHY CMVDLL +AG
Sbjct: 569 EGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLT 628
Query: 577 DAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636
DA + I MPF+ D +W + L AC H+NT+L + A ++L P +P+ Y+ LSN+YA
Sbjct: 629 DAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYA 688
Query: 637 TLGMWD-SLSXXXXXXXXXXXXXXXMSWIEV 666
G W+ S SWIEV
Sbjct: 689 CAGKWEESTEMRRKMKERNLVKEGGCSWIEV 719
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 205/661 (31%), Positives = 353/661 (53%)
Query: 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIFT-GNNLLSMYADFTSLNDAHKLFDEMARKN 68
L+ + ++ GK +H + K+G D T N L+++Y +K+FD ++ +N
Sbjct: 104 LKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERN 163
Query: 69 IVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACS---LSGDLDLGR 125
VSW +++++ S ++ A+ + ML+ +VEP+ F +V+ ACS + L +G+
Sbjct: 164 QVSWNSLISSLCSFEKWEMALEAFRCMLDE-NVEPSSFTLVSVVTACSNLPMPEGLMMGK 222
Query: 126 LIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYG--NVALWNSMLS 183
+H R K E ++ ++NTL+ MY K G L S ++G ++ WN++LS
Sbjct: 223 QVHAYGLR-KGELNSFIINTLVAMYGKLGKLAS------SKVLLGSFGGRDLVTWNTVLS 275
Query: 184 G---GKQV-HAF-----CVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVS 234
+Q+ A V G E ++ T++S++ C ++ + E +
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA---CSHLE----MLRTGKELHAYA 328
Query: 235 WTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGY 294
G + + F SALVDMY NC + R++FD + LWN+MI+GY
Sbjct: 329 LKN---GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD------RKIGLWNAMIAGY 379
Query: 295 VLNEQNEEAITLLSHIH-SSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYE 353
NE ++EA+ L + S+G+ +S T + AC+ F+ + A +HG +V G +
Sbjct: 380 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEA--IHGFVVKRGLD 437
Query: 354 LDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDM 413
D V + L+D+Y+RLG + A+ +F ++ +D+V W+ +I G + A LL M
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 497
Query: 414 INSNQDV-----------NQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTS 462
N + V N + ++L C+ L++L +GK++HA+ +K + ++
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSA 557
Query: 463 LIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN 522
L+DMY KCG + +F +P+++V++W II+ G +G +EAI + M+ +KPN
Sbjct: 558 LVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPN 617
Query: 523 EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLI 582
E+TF+ V +AC H+G+V+E IF MKP+YG+EP +HY C+VDLLG+AG +A QL+
Sbjct: 618 EVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLM 677
Query: 583 AEMPFKPDKT-IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMW 641
MP +K W+S+L A HNN ++ I A+ L+ P S YV+L+N+Y++ G+W
Sbjct: 678 NMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLW 737
Query: 642 D 642
D
Sbjct: 738 D 738
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
Identities = 212/680 (31%), Positives = 341/680 (50%)
Query: 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNI 69
++ C + G ++H ++K GL +D+F GN L+S Y + DA +LFD M +N+
Sbjct: 194 IKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNL 253
Query: 70 VSWTTMVTAYTSNKRPNWAIRLYNHMLEY---GSVEPNGFMYSAVLKACSLSGDLDLGRL 126
VSW +M+ ++ N + L M+E G+ P+ VL C+ ++ LG+
Sbjct: 254 VSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKG 313
Query: 127 IHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVALWNSMLSG 184
+H + +L+ + VL N L+DMY KCG +T + +F +N NV WN+M+ G
Sbjct: 314 VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNN------KNVVSWNTMVGG 367
Query: 185 GKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEI--DDGLALFNFMPERDVVSWTGIIVGC 242
F E + ++ L GE D + + N +P V +
Sbjct: 368 ------FSA----EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVP---VCFHESFLPSL 414
Query: 243 FECSCFTL-----------SALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMI 291
E C++L +A V Y+ C L A+++F S ++ WN++I
Sbjct: 415 KELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS------WNALI 468
Query: 292 SGYVLNEQNEEAITLLSHIHS--SGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVT 349
G+ + N+ ++L +H+ SG+ DS+T S L AC L + R +VHG I+
Sbjct: 469 GGHA--QSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSL--RLGKEVHGFIIR 524
Query: 350 SGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLL 409
+ E D V +++ LY G + + LF + K +V+W+ +I G ++G A +
Sbjct: 525 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 584
Query: 410 FRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLK 469
FR M+ + + V CS L SLR G++ HA+ +K E + SLIDMY K
Sbjct: 585 FRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK 644
Query: 470 CGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGV 529
G I +F + E+ SW +I+G G +G AKEAI F+EM ++ P+++TFLGV
Sbjct: 645 NGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGV 704
Query: 530 LSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAE-MPFK 588
L+AC H+GL+ E MK +GL+P+L+HY C++D+LG+AG D A +++AE M +
Sbjct: 705 LTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEE 764
Query: 589 PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSL-SXX 647
D IW S+L +C H N ++ +A +L PE P YV+LSN+YA LG W+ +
Sbjct: 765 ADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVR 824
Query: 648 XXXXXXXXXXXXXMSWIEVS 667
SWIE++
Sbjct: 825 QRMNEMSLRKDAGCSWIELN 844
|
|
| TAIR|locus:2007116 AT1G69350 "AT1G69350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 209/645 (32%), Positives = 341/645 (52%)
Query: 10 LRHC-GQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKN 68
LR C G R + G +H RIIK G+ D +LL MY +L+DA K+FD M ++
Sbjct: 107 LRACAGSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRD 166
Query: 69 IVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIH 128
+V+W+T+V++ N A+R++ M++ G VEP+ +V++ C+ G L + R +H
Sbjct: 167 LVAWSTLVSSCLENGEVVKALRMFKCMVDDG-VEPDAVTMISVVEGCAELGCLRIARSVH 225
Query: 129 ERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQV 188
+ITR+ + D L N+LL MY KCG L + A N W +M+S
Sbjct: 226 GQITRKMFDLDETLCNSLLTMYSKCGDL----LSSERIFEKIAKKNAVSWTAMISS---- 277
Query: 189 HAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPE-------RDVVSWTGIIVG 241
RG E + L S +M +K G + + L++ + R+ S G V
Sbjct: 278 ----YNRG-EFSEKALRSFSEM-IKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVR 331
Query: 242 C-FECSCFTLS-ALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQ 299
+ + +LS ALV++Y+ C L + + S N+ WNS+IS Y
Sbjct: 332 RELDPNYESLSLALVELYAECGKLSDCETVLRVVSD------RNIVAWNSLISLYAHRGM 385
Query: 300 NEEAITLLSHIHSSGMCIDSYTFTSALKACIN--LLNFNSRFALQVHGLIVTSGYELDYI 357
+A+ L + + + D++T S++ AC N L+ Q+HG ++ + D
Sbjct: 386 VIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGK----QIHGHVIRTDVS-DEF 440
Query: 358 VGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSN 417
V ++LID+Y++ G+V SA +F+++ + VV W+ ++ G +++G + A LF M +S
Sbjct: 441 VQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSY 500
Query: 418 QDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGL 477
++N+ +V++ CS + SL +GK VH + G K+ T T+LIDMY KCG+++
Sbjct: 501 LEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL-KDLFTDTALIDMYAKCGDLNAAE 559
Query: 478 ALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG 537
+F+ M R +VSW+ +I G +GR AI+ F +M++S KPNE+ F+ VLSAC H+G
Sbjct: 560 TVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSG 619
Query: 538 LVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASM 597
VEE F MK +G+ P+ EH+ C +DLL ++G +A + I EMPF D ++W S+
Sbjct: 620 SVEEGKYYFNLMK-SFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSL 678
Query: 598 LKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWD 642
+ C H ++ I L +D Y +LSN+YA G W+
Sbjct: 679 VNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWE 723
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| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 145/397 (36%), Positives = 227/397 (57%)
Query: 251 SALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHI 310
+AL+ Y++ + A+KLFD+ +V WN+MISGY +EA+ L +
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIP------VKDVVSWNAMISGYAETGNYKEALELFKDM 257
Query: 311 HSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLG 370
+ + D T + + AC + + QVH I G+ + + + LIDLY++ G
Sbjct: 258 MKTNVRPDESTMVTVVSACAQ--SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG 315
Query: 371 NVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLK 430
+++A LF RLP KDV++W+ LI G T L A LLF++M+ S + N + S+L
Sbjct: 316 ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 375
Query: 431 VCSCLASLRRGKQVHAFCVKR--GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDV 488
C+ L ++ G+ +H + KR G TSLIDMY KCG+I+ +F + + +
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435
Query: 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTS 548
SW +I G +GRA + F M + ++P++ITF+G+LSAC H+G+++ IF +
Sbjct: 436 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRT 495
Query: 549 MKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTK 608
M +Y + P LEHY CM+DLLG +G F +AE++I M +PD IW S+LKAC+ H N +
Sbjct: 496 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVE 555
Query: 609 LVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLS 645
L AE L+ PE+P YV+LSN+YA+ G W+ ++
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVA 592
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| TAIR|locus:2057630 AT2G33680 "AT2G33680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 211/680 (31%), Positives = 344/680 (50%)
Query: 6 IVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMA 65
+++ L H Q+R++ G+++H +II+ G S I N L++ YA L AH +F+ +
Sbjct: 17 LLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAII 76
Query: 66 RKNIVSWTTMVTAYTSNK--RPNWAI-RLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLD 122
K++VSW +++T Y+ N ++ + +L+ M + PN + + + KA S
Sbjct: 77 CKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQ-DILPNAYTLAGIFKAESSLQSST 135
Query: 123 LGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSML 182
+GR H + + D + +L+ MY K G + D +A N W++M+
Sbjct: 136 VGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVE----DGLKVFAYMPERNTYTWSTMV 191
Query: 183 SGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGL-ALFNFMPERDVVSWTGIIVG 241
SG +A RG +E + + +++L+ E ++G + + F ++ T I VG
Sbjct: 192 SG----YA---TRGRVEEAI---KVFNLFLR--EKEEGSDSDYVFTAVLSSLAAT-IYVG 238
Query: 242 CF-ECSCFTL-----------SALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNS 289
+ C T+ +ALV MYS C L EA K+FD +S N W++
Sbjct: 239 LGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFD------SSGDRNSITWSA 292
Query: 290 MISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVT 349
M++GY N ++ EA+ L S + S+G+ YT L AC ++ Q+H ++
Sbjct: 293 MVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEE--GKQLHSFLLK 350
Query: 350 SGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLL 409
G+E + L+D+YA+ G + A + F L ++DV W+ LI G ++ N A +L
Sbjct: 351 LGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALIL 410
Query: 410 FRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLK 469
+R M + N ++SVLK CS LA+L GKQVH +K GF E ++L MY K
Sbjct: 411 YRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSK 470
Query: 470 CGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGV 529
CG ++DG +F+ P +DVVSW +I G NG+ EA+ F+EM+ ++P+++TF+ +
Sbjct: 471 CGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNI 530
Query: 530 LSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKP 589
+SAC H G VE W F M + GL+P ++HY CMVDLL +AG +A++ I
Sbjct: 531 ISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDH 590
Query: 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG-MWDSLSXXX 648
+W +L AC+ H +L E+L+A + S YV LS +Y LG M D
Sbjct: 591 GLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWK 650
Query: 649 XXXXXXXXXXXXMSWIEVSS 668
SWIE+ +
Sbjct: 651 HMRANGVSKEVGCSWIELKN 670
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SUF9 | PP305_ARATH | No assigned EC number | 0.5027 | 0.9416 | 0.9169 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pm.C_LG_II000404 | hypothetical protein (691 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 668 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-108 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-93 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-41 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-33 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.004 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 347 bits (892), Expect = e-108
Identities = 173/658 (26%), Positives = 297/658 (45%), Gaps = 119/658 (18%)
Query: 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNI 69
LR CG + +G+ +H ++++G D+ N L++MY + A +FD M R++
Sbjct: 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC 253
Query: 70 VSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHE 129
+SW M++ Y N + L+ M E SV+P+
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTMREL-SVDPD------------------------- 287
Query: 130 RITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVH 189
LM T+ + C L + G+++H
Sbjct: 288 ------------LM-TITSVISACELLGDERL-----------------------GREMH 311
Query: 190 AFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFT 249
+ VK GF + SLI MYL G + +F+ M +D VSWT
Sbjct: 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT------------- 358
Query: 250 LSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSH 309
+MISGY N ++A+ +
Sbjct: 359 ---------------------------------------AMISGYEKNGLPDKALETYAL 379
Query: 310 IHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARL 369
+ + D T S L AC L + + +++H L G +V + LI++Y++
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDV--GVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 370 GNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVL 429
+ ALE+FH +P+KDV++W+ +I G + A + FR M+ + + N + + L
Sbjct: 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP-NSVTLIAAL 496
Query: 430 KVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVV 489
C+ + +L GK++HA ++ G + +L+D+Y++CG ++ F E+DVV
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVV 555
Query: 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSM 549
SW ++ G +G+ A+ F M++S + P+E+TF+ +L AC +G+V + F SM
Sbjct: 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
Query: 550 KPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKL 609
+ +Y + P+L+HY C+VDLLG+AG +A I +MP PD +W ++L AC H + +L
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675
Query: 610 VSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG-EKKAGMSWIEV 666
+ A+ + P Y++L N+YA G WD +++VRK ++ G G SW+EV
Sbjct: 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 301 bits (773), Expect = 8e-93
Identities = 146/425 (34%), Positives = 236/425 (55%), Gaps = 9/425 (2%)
Query: 243 FECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEE 302
FE + ++ ++ M+ C +L +AR+LFD+ N+A W ++I G V E
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE------RNLASWGTIIGGLVDAGNYRE 207
Query: 303 AITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNL 362
A L + G + TF L+A L ++R Q+H ++ +G D V L
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGL--GSARAGQQLHCCVLKTGVVGDTFVSCAL 265
Query: 363 IDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQ 422
ID+Y++ G+++ A +F +P+K VAW+ ++ G HG + A L+ +M +S ++Q
Sbjct: 266 IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 423 FIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKF 482
F S ++++ S LA L KQ HA ++ GF + + T+L+D+Y K G ++D +F
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 483 MPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEA 542
MP ++++SW +I G G +GR +A+ F+ MI + PN +TFL VLSACR++GL E+
Sbjct: 386 MPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 543 WTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACE 602
W IF SM + ++P HY CM++LLG+ G D+A +I PFKP +WA++L AC
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505
Query: 603 THNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG-EKKAGM 661
H N +L + AE+L PE + YV+L N+Y + G +KV + K+ G
Sbjct: 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565
Query: 662 SWIEV 666
+WIEV
Sbjct: 566 TWIEV 570
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-41
Identities = 110/451 (24%), Positives = 176/451 (39%), Gaps = 119/451 (26%)
Query: 2 DLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLF 61
DL I + C + G+ +H ++K G + D+ N+L+ MY S +A K+F
Sbjct: 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346
Query: 62 DEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDL 121
M K+ VSWT M++ Y N P+ A+ Y ++E +V P+ ++VL AC+ GDL
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYA-LMEQDNVSPDEITIASVLSACACLGDL 405
Query: 122 DLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKL--FDQYSNWAASAYGNVALWN 179
D+G +HE R+ L V+ N L++MY KC + + L F +V W
Sbjct: 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE------KDVISWT 459
Query: 180 SMLSG-------------------------------------------GKQVHAFCVKRG 196
S+++G GK++HA ++ G
Sbjct: 460 SIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519
Query: 197 FEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDM 256
+ +L+D+Y++CG ++ FN E+DVVS
Sbjct: 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVS---------------------- 556
Query: 257 YSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMC 316
WN +++GYV + + A+ L + + SG+
Sbjct: 557 ------------------------------WNILLTGYVAHGKGSMAVELFNRMVESGVN 586
Query: 317 IDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNL------IDLYARLG 370
D TF S L AC SR + GL E Y + NL +DL R G
Sbjct: 587 PDEVTFISLLCAC-------SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639
Query: 371 NVKSALELFHRLP-KKDVVAWSGLIMGCTKH 400
+ A +++P D W L+ C H
Sbjct: 640 KLTEAYNFINKMPITPDPAVWGALLNACRIH 670
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Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 1e-33
Identities = 97/396 (24%), Positives = 183/396 (46%), Gaps = 11/396 (2%)
Query: 275 SWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLN 334
S AAS+ + NS + + Q E+A+ LL + + +D + + + C
Sbjct: 42 SVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA 101
Query: 335 FNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLI 394
+V ++S L +G+ ++ ++ R G + A +F ++P++D+ +W+ L+
Sbjct: 102 VEE--GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159
Query: 395 MGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFE 454
G K G A L+ M+ + + + VL+ C + L RG++VHA V+ GFE
Sbjct: 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE 219
Query: 455 KEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEM 514
+ + +LI MY+KCG++ +F MP RD +SW +I G +NG E + F M
Sbjct: 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM 279
Query: 515 IQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGC 574
+ + P+ +T V+SAC G + + G + ++ + G
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMH-GYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 575 FDDAEQLIAEMPFKPDKTIWASMLKACETHN--NTKLVSIIAEQLLATSPEDPSKYVMLS 632
+ +AE++ + M K D W +M+ E + + L + + SP++ + +LS
Sbjct: 339 WGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 633 NVYATLGMWDSLSKVRKAGKKLGEKKAGMSWIEVSS 668
A LG D K+ +L E+K +S++ V++
Sbjct: 398 AC-ACLGDLDVGVKLH----ELAERKGLISYVVVAN 428
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 7e-31
Identities = 73/272 (26%), Positives = 133/272 (48%), Gaps = 3/272 (1%)
Query: 317 IDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSAL 376
+ + T+ + ++ACI L + R V+ + +SG+E D + + ++ ++ + G + A
Sbjct: 121 LPASTYDALVEACIALKSI--RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178
Query: 377 ELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA 436
LF +P++++ +W +I G G A+ LFR+M D +L+ + L
Sbjct: 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238
Query: 437 SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIV 496
S R G+Q+H +K G + +LIDMY KCG+I+D +F MPE+ V+W ++
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLA 298
Query: 497 GCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLE 556
G +G ++EA+ + EM S + ++ TF ++ L+E A + G
Sbjct: 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFP 357
Query: 557 PHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFK 588
+ +VDL + G +DA + MP K
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389
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Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-28
Identities = 99/449 (22%), Positives = 170/449 (37%), Gaps = 119/449 (26%)
Query: 13 CGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSW 72
C +SI+ K+++ + G D + N +L M+ L DA +LFDEM +N+ SW
Sbjct: 133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASW 192
Query: 73 TTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERIT 132
T++ A L+ M E GS + + +L+A + G G+ +H +
Sbjct: 193 GTIIGGLVDAGNYREAFALFREMWEDGS-DAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 133 REKLEYDTVLMNTLLDMYVKCGSL--TRKLFDQYSNWAASAYGNV--------------A 176
+ + DT + L+DMY KCG + R +FD A+ ++
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311
Query: 177 LWNSMLSGG------------------------KQVHAFCVKRGFEKEDVTLTSLIDMYL 212
L+ M G KQ HA ++ GF + V T+L+D+Y
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371
Query: 213 KCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQ 272
K G ++D +F+ MP ++++S
Sbjct: 372 KWGRMEDARNVFDRMPRKNLIS-------------------------------------- 393
Query: 273 YSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINL 332
WN++I+GY + + +A+ + + + G+ + TF + L AC
Sbjct: 394 --------------WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC--- 436
Query: 333 LNFNSRFALQVHGLIVTSGYELDYIVGSN------------LIDLYARLGNVKSALELFH 380
R++ GL G+E+ + N +I+L R G + A +
Sbjct: 437 -----RYS----GL-SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486
Query: 381 RLPKKDVV-AWSGLIMGCTKHGLNSLAYL 408
R P K V W+ L+ C H L L
Sbjct: 487 RAPFKPTVNMWAALLTACRIHKNLELGRL 515
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-19
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 9/183 (4%)
Query: 4 RRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDE 63
R V LR S + G+ LHC ++K G+ D F L+ MY+ + DA +FD
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284
Query: 64 MARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDL 123
M K V+W +M+ Y + A+ LY M + G V + F +S +++ S L+
Sbjct: 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEH 343
Query: 124 GRLIHERITREKLEYDTVLMNTLLDMYVKCGSL--TRKLFDQYSNWAASAYGNVALWNSM 181
+ H + R D V L+D+Y K G + R +FD+ N+ WN++
Sbjct: 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PRKNLISWNAL 397
Query: 182 LSG 184
++G
Sbjct: 398 IAG 400
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-14
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNI 69
+R + ++ K H +I+ G DI L+ +Y+ + + DA +FD M RKN+
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391
Query: 70 VSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHE 129
+SW ++ Y ++ R A+ ++ M+ G V PN + AVL AC SG + G I +
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450
Query: 130 RITR 133
++
Sbjct: 451 SMSE 454
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 1e-11
Identities = 67/314 (21%), Positives = 140/314 (44%), Gaps = 27/314 (8%)
Query: 321 TFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFH 380
TF + C + + + AL+V L+ +G + D + + LI A+ G V + E+FH
Sbjct: 439 TFNMLMSVCASSQDIDG--ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 496
Query: 381 RLPKKDVVA----WSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA 436
+ V A + LI GC + G + A+ + M + N ++ + ++++ C
Sbjct: 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG--- 553
Query: 437 SLRRGKQVHAFCVKRGFEKED-------ITLTSLIDMYLKCGEIDDGLALFKFMPERDVV 489
+ G AF V + E IT+ +L+ G++D +++ + E ++
Sbjct: 554 --QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 490 S----WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTI 545
+T + C Q G A++ + +M + +KP+E+ F ++ HAG +++A+ I
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 546 FTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQL---IAEMPFKPD-KTIWASMLKAC 601
+ + G++ Y ++ A + A +L I + +P T+ A + C
Sbjct: 672 LQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730
Query: 602 ETHNNTKLVSIIAE 615
E + K + +++E
Sbjct: 731 EGNQLPKALEVLSE 744
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 16/202 (7%)
Query: 363 IDLYARL---GNVKSALELFHRLPKKDVVAW-----SGLIMGCTKHGLNSLAYLLFRDMI 414
ID Y RL G +K ++L + K+ ++ + C K A+ + +
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433
Query: 415 NSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEID 474
N ++S VC+ + +V + G + + T+LI K G++D
Sbjct: 434 NPTLSTFNMLMS----VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489
Query: 475 DGLALFKFMP----ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVL 530
+F M E +V ++ +I GC + G+ +A + M +KP+ + F ++
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 531 SACRHAGLVEEAWTIFTSMKPE 552
SAC +G V+ A+ + MK E
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAE 571
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSAC 533
DVV++ +I G + G+ +EA+ F EM + +KPN T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 67 KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKAC 115
++V++ T++ Y + A++L+N M + G ++PN + YS ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 3e-05
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 283 NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKAC 329
+V +N++I GY + EEA+ L + + G+ + YT++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE 523
V++ +I G + GR +EA+ F+EM + ++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 81/400 (20%), Positives = 150/400 (37%), Gaps = 71/400 (17%)
Query: 184 GGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCF 243
G +V + G + + T+LI K G++D A+F E G+
Sbjct: 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD---AMFEVFHEMVN---AGV----- 503
Query: 244 ECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-----NV----ALWNSMISGY 294
E + T AL+D C + K F AYG NV ++N++IS
Sbjct: 504 EANVHTFGALID---GCARAGQVAKAF--------GAYGIMRSKNVKPDRVVFNALISAC 552
Query: 295 VLNEQNEEAITLLSHIHSSGMCI--DSYTFTSALKACINLLNFNSRFALQVHGLIVTSGY 352
+ + A +L+ + + I D T + +KAC N + A +V+ +I
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR--AKEVYQMIHEYNI 610
Query: 353 ELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDV----VAWSGLIMGCTKHGLNSLAYL 408
+ V + ++ ++ G+ AL ++ + KK V V +S L+ G A+
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 409 LFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYL 468
+ +D + SS++ CS + ++ +++ EDI
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY----------EDIKSI------- 713
Query: 469 KCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLG 528
K P V + +I + + +A+ EM + L PN IT+
Sbjct: 714 ------------KLRPT--VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759
Query: 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDL 568
+L A + + + K + G++P+L C+ L
Sbjct: 760 LLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 37 DIFTGNNLLSMYADFTSLNDAHKLFDEMARK----NIVSWTTMVTAY 79
D+ T N L+ Y + +A KLF+EM ++ N+ +++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL 519
V++ +I G + G+ +EA+ F+EM + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 668 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.67 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.59 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.52 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.41 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.41 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.35 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.3 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.28 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.26 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.21 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.17 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.14 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.12 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.11 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.11 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.09 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.07 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.06 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.04 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.99 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.96 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.95 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.93 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.92 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.89 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.88 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.83 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.75 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.75 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.75 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.74 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.72 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.63 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.58 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.55 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.55 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.54 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.46 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.46 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.45 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.41 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.35 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.31 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.28 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.28 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.27 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.26 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.26 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.25 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.2 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.15 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.11 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.11 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.05 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.04 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.02 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.0 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.0 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.98 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.95 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.94 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.89 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.76 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.71 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.68 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.64 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.64 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.63 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.63 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.6 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.57 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.57 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.55 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.54 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.53 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.52 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.52 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.51 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.49 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.45 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.44 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.42 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.41 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.4 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.39 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.39 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.37 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.34 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.32 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.25 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.22 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.19 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.13 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.13 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.06 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.01 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.96 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.93 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.9 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.89 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.88 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.88 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.82 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.78 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.78 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.78 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.71 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.69 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.67 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.64 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.57 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.56 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.46 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.35 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.27 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.27 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.25 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.25 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.15 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.15 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.03 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.95 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.85 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.76 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.72 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.71 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.69 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.6 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.59 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.54 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.51 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.47 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.39 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.36 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.36 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.34 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.28 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.27 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.18 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.17 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.14 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.12 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.98 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.9 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.75 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.63 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.45 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.39 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.12 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.04 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.9 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.85 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.84 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.76 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.75 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.54 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.4 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.13 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.0 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.91 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.9 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.83 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.75 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.64 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 92.64 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.59 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.56 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.49 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.45 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.41 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.15 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.03 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.94 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.82 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.8 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.37 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.25 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.92 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.63 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.58 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.5 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.93 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.75 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.72 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.63 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.16 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.95 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.9 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.89 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.85 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.84 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.83 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.76 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.64 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.38 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.26 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 88.23 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.21 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.16 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.55 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.43 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.27 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.15 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.1 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.09 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 86.96 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 86.83 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.66 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.52 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.47 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.44 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.22 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 86.12 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.98 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.84 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 85.74 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.64 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.54 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.47 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.43 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.83 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 84.54 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.36 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.21 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.63 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 82.72 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 82.4 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 82.4 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.36 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.07 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.87 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 81.43 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 81.38 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 81.33 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.97 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.45 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.33 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.14 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-91 Score=769.45 Aligned_cols=640 Identities=30% Similarity=0.588 Sum_probs=616.1
Q ss_pred CChhhHHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHh
Q 005943 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYT 80 (668)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 80 (668)
|+..+|..++.+|.+.+.++.+.+++..+.+.+..++...+|.++..|++.|+++.|.++|++|++||+.+||.+|.+|+
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~ 163 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYA 163 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHH
Confidence 45666777777777777777777777777777777777888999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--H
Q 005943 81 SNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--R 158 (668)
Q Consensus 81 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~ 158 (668)
+.|++++|+++|++|...|+. ||..||+.++++|+..+++..+.+++..|.+.|+.||..+||+|+.+|++.|+.+ .
T Consensus 164 ~~g~~~~A~~~f~~M~~~g~~-Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 242 (857)
T PLN03077 164 KAGYFDEALCLYHRMLWAGVR-PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHH
Confidence 999999999999999999988 9999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhhhhhhhhcCCCchhhhhhhhc---------chhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCC
Q 005943 159 KLFDQYSNWAASAYGNVALWNSMLSG---------GKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPE 229 (668)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 229 (668)
++|+.|+. +|..+|+.++.+ +..++..|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+
T Consensus 243 ~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 243 LVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred HHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999987 788999999987 778999999999999999999999999999999999999999998
Q ss_pred CCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHH
Q 005943 230 RDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSH 309 (668)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 309 (668)
.+..+ |..+|++|+.+|++.|++++|.++|++| ..||..+||.+|.+|++.|++++|+++|++
T Consensus 317 ~g~~~-----------d~~~~n~Li~~y~k~g~~~~A~~vf~~m------~~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 317 TGFAV-----------DVSVCNSLIQMYLSLGSWGEAEKVFSRM------ETKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hCCcc-----------chHHHHHHHHHHHhcCCHHHHHHHHhhC------CCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77665 8999999999999999999999999999 678999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhh
Q 005943 310 IHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVA 389 (668)
Q Consensus 310 m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 389 (668)
|.+.|+.||..||+.++.+|++.|++ +.+.++++.+.+.|+.|+..++++|+.+|++.|++++|.++|++|.++|..+
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~--~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs 457 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDL--DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS 457 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchH--HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeee
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 005943 390 WSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLK 469 (668)
Q Consensus 390 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 469 (668)
|+.++.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++++|++
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 99999999999999999999999985 69999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 470 CGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
+|++++|.++|+.+ .+|+.+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|
T Consensus 537 ~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 537 CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 550 KPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 550 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
.+++|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|.+++.+|..+|+.+.++...+++.+++|++...|.
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 97779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCC-CCCceeEEEeCC
Q 005943 630 MLSNVYATLGMWDSLSKVRKAGKKLGE-KKAGMSWIEVSS 668 (668)
Q Consensus 630 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 668 (668)
.++++|.+.|+|++|.++.+.|++.|+ |+||.|||||++
T Consensus 696 ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 696 LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 999999999999999999999999999 999999999975
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-75 Score=639.16 Aligned_cols=567 Identities=25% Similarity=0.387 Sum_probs=485.0
Q ss_pred CChhhHHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcC----CCChhHHHHHH
Q 005943 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMA----RKNIVSWTTMV 76 (668)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li 76 (668)
|+..+++.++.++.+.|++++|..+|+.|.+.|++|+..+|..++.+|.+.+.++.+..++..+. .+++..+|.++
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777777766542 35666677777
Q ss_pred HHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCCh
Q 005943 77 TAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSL 156 (668)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 156 (668)
..|++.|+++.|+++|++|.+ ||..+|++++.+|++.|++++|.++|++|...|+.||..||+.++++|+..++.
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 777777777777777777753 666777777777777777777777777777777777777777777666655543
Q ss_pred hHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHH
Q 005943 157 TRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWT 236 (668)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 236 (668)
. .+.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|+.|
T Consensus 204 ~--------------------------~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m--------- 248 (857)
T PLN03077 204 A--------------------------RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM--------- 248 (857)
T ss_pred h--------------------------hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC---------
Confidence 3 12244455555666666666666666666666666665555555
Q ss_pred HHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 005943 237 GIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMC 316 (668)
Q Consensus 237 ~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 316 (668)
..||..+||++|.+|++.|++++|+++|++|...|+.
T Consensus 249 -------------------------------------------~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 249 -------------------------------------------PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred -------------------------------------------CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 5567788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHH
Q 005943 317 IDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMG 396 (668)
Q Consensus 317 p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 396 (668)
||..||+.++.+|++.|+. +.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.++|..+|+.++.+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~--~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 286 PDLMTITSVISACELLGDE--RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 005943 397 CTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDG 476 (668)
Q Consensus 397 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 476 (668)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|+++|++.|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCC
Q 005943 477 LALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLE 556 (668)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 556 (668)
.++|++|.++|+.+|+.++.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+. |+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~ 521 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIG 521 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999999999986 59999999999999999999999999999999976 999
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-CCCCchhHHHHHHHH
Q 005943 557 PHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLAT-SPEDPSKYVMLSNVY 635 (668)
Q Consensus 557 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~ 635 (668)
+|..++++|+++|.++|+.++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+. ..+|..+|..++.+|
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 99999999999999999999999999998 789999999999999999999999999999883 345677899999999
Q ss_pred HhcCChhhHHHHHHHHH-hcCC
Q 005943 636 ATLGMWDSLSKVRKAGK-KLGE 656 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~-~~~~ 656 (668)
.+.|++++|.++++.|. +.|+
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCC
Confidence 99999999999999998 5566
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-71 Score=596.92 Aligned_cols=487 Identities=32% Similarity=0.567 Sum_probs=452.1
Q ss_pred CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHH
Q 005943 67 KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTL 146 (668)
Q Consensus 67 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (668)
.+..+|+.+|.++.+.|++++|+++|+.|...+...||..+|+.++.+|++.++++.+.+++..|.+.|+.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~--------- 155 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE--------- 155 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------
Confidence 45567888888888888888888888888776533378888888888888888888887777777766554
Q ss_pred HhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhc
Q 005943 147 LDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNF 226 (668)
Q Consensus 147 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 226 (668)
||..+|+.++.+|++.|+++.|.++|++
T Consensus 156 ----------------------------------------------------~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 156 ----------------------------------------------------PDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred ----------------------------------------------------cchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 5555566666666666666666666666
Q ss_pred cCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 005943 227 MPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITL 306 (668)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 306 (668)
| ..||..+||.+|.+|++.|++++|+++
T Consensus 184 m----------------------------------------------------~~~~~~t~n~li~~~~~~g~~~~A~~l 211 (697)
T PLN03081 184 M----------------------------------------------------PERNLASWGTIIGGLVDAGNYREAFAL 211 (697)
T ss_pred C----------------------------------------------------CCCCeeeHHHHHHHHHHCcCHHHHHHH
Confidence 6 456888999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCC
Q 005943 307 LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKD 386 (668)
Q Consensus 307 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 386 (668)
|++|.+.|+.||..||+.++.+|+..|.. +.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~--~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~ 289 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSA--RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcH--HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDM 466 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 466 (668)
+.+||.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+++
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 005943 467 YLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIF 546 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 546 (668)
|++.|++++|.++|++|.+||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|
T Consensus 370 y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 547 TSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 547 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
+.|.++.|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++++.+|..+|+++.|..+++++.+..|++..
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 99987779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCceeEEEeCC
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKKLGE-KKAGMSWIEVSS 668 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 668 (668)
+|..++.+|.+.|++++|.++++.|++.|+ +.||.||+|+++
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 999999999999999999999999999999 999999999874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-68 Score=574.25 Aligned_cols=538 Identities=14% Similarity=0.181 Sum_probs=486.2
Q ss_pred ChhhHHHHHHHhcccCchhhhhhhHHHHHHhcC-CCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHh
Q 005943 2 DLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGL-SQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYT 80 (668)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 80 (668)
+...|..++..|.+.|++++|.++|+.|.+.|+ .++..+++.++..|++.|.+++|.++|+.|++||..+|+.+|.+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456788899999999999999999999999995 5677788899999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHH
Q 005943 81 SNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKL 160 (668)
Q Consensus 81 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~ 160 (668)
+.|+++.|.++|+.|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++++
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999988 9999999999999999999999999999999999999999999999999999987333
Q ss_pred HhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCC--CCcchHHHH
Q 005943 161 FDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPE--RDVVSWTGI 238 (668)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 238 (668)
.+++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .+..+
T Consensus 528 --------------------------~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P---- 577 (1060)
T PLN03218 528 --------------------------GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP---- 577 (1060)
T ss_pred --------------------------HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC----
Confidence 5556666699999999999999999999999999999999974 33333
Q ss_pred hhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005943 239 IVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCID 318 (668)
Q Consensus 239 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 318 (668)
|..+|++++.+|++.|++++|.++|+.|.+ .+..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 578 -------D~vTynaLI~ay~k~G~ldeA~elf~~M~e--~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 578 -------DHITVGALMKACANAGQVDRAKEVYQMIHE--YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred -------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 788999999999999999999999999965 45789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCC----CCChhhHHHHH
Q 005943 319 SYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLP----KKDVVAWSGLI 394 (668)
Q Consensus 319 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~ 394 (668)
..||+.++.+|++.|+. +.|.++++.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|. .||..+|+.||
T Consensus 649 ~~TynsLI~a~~k~G~~--eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDL--DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999995 58999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 005943 395 MGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEID 474 (668)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 474 (668)
.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++++..|. ++++
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ 804 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFE 804 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997654 2456
Q ss_pred HHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccC
Q 005943 475 DGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYG 554 (668)
Q Consensus 475 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 554 (668)
+|..+.+.+.. |+. .......+..+.|+.+|++|.+.|+.||..||+.++.++++.+....+..+++.|... +
T Consensus 805 ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~ 877 (1060)
T PLN03218 805 KACALGEPVVS-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-A 877 (1060)
T ss_pred HHhhhhhhhhh-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-C
Confidence 66555443321 110 1111222345679999999999999999999999999888999999999999998865 8
Q ss_pred CCCChhHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHH
Q 005943 555 LEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM---PFKPDKT 592 (668)
Q Consensus 555 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~ 592 (668)
..|+..+|+++++++++. .++|..++++| ++.|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 889999999999998432 46899999999 5566653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-65 Score=546.64 Aligned_cols=530 Identities=15% Similarity=0.182 Sum_probs=334.3
Q ss_pred CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHH
Q 005943 67 KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTL 146 (668)
Q Consensus 67 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (668)
++...|..++..+++.|++++|+++|++|.+.|...++..+++.++.+|.+.|.+++|..+++.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4666788888888888888888888888888776646777777788888888888888888877753 777777777
Q ss_pred HhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhc
Q 005943 147 LDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNF 226 (668)
Q Consensus 147 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 226 (668)
|.+|++.|+++.. .++++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 444 L~a~~k~g~~e~A--------------------------~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~e 497 (1060)
T PLN03218 444 MSVCASSQDIDGA--------------------------LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497 (1060)
T ss_pred HHHHHhCcCHHHH--------------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 7777777766522 24444555577777777777777777777777777777777
Q ss_pred cCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 005943 227 MPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITL 306 (668)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 306 (668)
|.+.+..+ |..+|+.+|.+|++.|++++|.++|+.|.+ .+..||..+|+.+|.+|++.|++++|.++
T Consensus 498 M~~~Gv~P-----------dvvTynaLI~gy~k~G~~eeAl~lf~~M~~--~Gv~PD~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 498 MVNAGVEA-----------NVHTFGALIDGCARAGQVAKAFGAYGIMRS--KNVKPDRVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred HHHcCCCC-----------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77555433 455555555555555555555555555532 33556666666666666666666666666
Q ss_pred HHHHHh--CCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC
Q 005943 307 LSHIHS--SGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK 384 (668)
Q Consensus 307 ~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (668)
|++|.. .|+.||..||++++.+|++.|++ +.|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 565 f~eM~~~~~gi~PD~vTynaLI~ay~k~G~l--deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 565 LAEMKAETHPIDPDHITVGALMKACANAGQV--DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 666654 35566666666666666666666 66666666666666666666666666666666666666555555542
Q ss_pred ----CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHH
Q 005943 385 ----KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITL 460 (668)
Q Consensus 385 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 460 (668)
||..+|+.++.+|++.|+.++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCChHHHHHHhccCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMP----ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHA 536 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 536 (668)
+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~- 801 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR- 801 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Confidence 555555555555555555555554 255555555555555555555555555555555555555555555544321
Q ss_pred CCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhhCCHHHHHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM---PFKPDKTIWASMLKACETHNNTKLVSII 613 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 613 (668)
.+++|..+.+.+.. +.+ .......+..++|..+|++| +..||..+|+.++..+.+.+....+..+
T Consensus 802 -~y~ka~~l~~~v~~---f~~--------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m 869 (1060)
T PLN03218 802 -RFEKACALGEPVVS---FDS--------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRL 869 (1060)
T ss_pred -HHHHHhhhhhhhhh---hhc--------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHH
Confidence 23333332222210 000 00001112346788888888 5778988998888777777888888777
Q ss_pred HHHHHh-cCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 614 AEQLLA-TSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 614 ~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++.+.. ..+++..+|..++..+.+. .++|..++++|.+.|+
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 776654 4566677888888876321 3579999999999888
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=527.06 Aligned_cols=471 Identities=22% Similarity=0.389 Sum_probs=406.8
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHhhhhcC-----CCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchH
Q 005943 34 LSQDIFTGNNLLSMYADFTSLNDAHKLFDEMA-----RKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMY 108 (668)
Q Consensus 34 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 108 (668)
..++...++.++..|++.|++++|+++|+.|. .||..+|+.++.+|++.++++.+..++..|.+.|.. ||..+|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~ 161 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQYMM 161 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchHHH
Confidence 34556677777777777777777777777774 246677777777777777777777777777777766 777777
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhh
Q 005943 109 SAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQV 188 (668)
Q Consensus 109 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (668)
+.++..|++.|+++.|.++|++|. .||..+||+++.+|++.|+.++++ .+
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~--------------------------~l 211 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAF--------------------------AL 211 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHH--------------------------HH
Confidence 777777777777777777777774 467777777777777777766332 44
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHH
Q 005943 189 HAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARK 268 (668)
Q Consensus 189 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 268 (668)
++.|.+.|+.|+..||+.++.+|++.|+.+.+.+++..+.+.+..+ |..++++|+++|++.|++++|.+
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~-----------d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG-----------DTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc-----------cceeHHHHHHHHHHCCCHHHHHH
Confidence 4445557777777777777777877787777777777776555444 67777788888888888888888
Q ss_pred HHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 005943 269 LFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIV 348 (668)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~ 348 (668)
+|+.| ..+|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|.+ +.+.+++..|.
T Consensus 281 vf~~m------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~--~~a~~i~~~m~ 352 (697)
T PLN03081 281 VFDGM------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL--EHAKQAHAGLI 352 (697)
T ss_pred HHHhC------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch--HHHHHHHHHHH
Confidence 88888 66789999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005943 349 TSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSV 428 (668)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 428 (668)
+.|+.||..++++|+++|+++|++++|.++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccchHhHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC-CCCHhHHHHHHHHHHhcCChHH
Q 005943 429 LKVCSCLASLRRGKQVHAFCVK-RGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP-ERDVVSWTGIIVGCGQNGRAKE 506 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 506 (668)
+.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|. .|+..+|++|+.+|...|+++.
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHH
Confidence 9999999999999999999986 6999999999999999999999999999999997 5899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC
Q 005943 507 AIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP 557 (668)
Q Consensus 507 a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 557 (668)
|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|... |+..
T Consensus 513 a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 513 GRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 9999999976 5665 569999999999999999999999999976 8754
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=320.94 Aligned_cols=612 Identities=10% Similarity=0.003 Sum_probs=471.8
Q ss_pred HHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC---CChhHHHHHHHHHhcCCChhh
Q 005943 11 RHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR---KNIVSWTTMVTAYTSNKRPNW 87 (668)
Q Consensus 11 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 87 (668)
..+...|++++|...++++.+.+. .+...+..+...+...|++++|...|+...+ .+...+..+...+.+.|++++
T Consensus 269 ~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 347 (899)
T TIGR02917 269 LVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDE 347 (899)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHH
Confidence 344566788888888888776552 1222334455566677888888888877643 244566667777778888888
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhh
Q 005943 88 AIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYS 165 (668)
Q Consensus 88 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~ 165 (668)
|...++.+.+.. + .+...+..+...+...|++++|.++++.+.+... .+...+..+...+...|+.. ...++...
T Consensus 348 A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 348 AIATLSPALGLD-P-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 888888777655 2 3456677777777788888888888887776532 24455666666667777766 33343333
Q ss_pred hhhhhcCCCchh-------hhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHH
Q 005943 166 NWAASAYGNVAL-------WNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGI 238 (668)
Q Consensus 166 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 238 (668)
...... ..... -....+.+..++..+.. ..+++..++..+...+...|++++|.+.|+++...++.
T Consensus 425 ~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----- 497 (899)
T TIGR02917 425 QLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEK-KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD----- 497 (899)
T ss_pred hhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-----
Confidence 211000 00000 00001113344444443 23456778899999999999999999999988754432
Q ss_pred hhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005943 239 IVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCID 318 (668)
Q Consensus 239 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 318 (668)
+...+..+...+...|++++|.+.|+.+... .+.+..++..+...+.+.|+.++|...++++...+ +.+
T Consensus 498 -------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 566 (899)
T TIGR02917 498 -------FFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQE 566 (899)
T ss_pred -------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 4567778889999999999999999998652 23356778888999999999999999999997754 345
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHH
Q 005943 319 SYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK---KDVVAWSGLIM 395 (668)
Q Consensus 319 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 395 (668)
...+..+...+...|+. +.+..+++.+.+.. +.+...+..+...+.+.|++++|...|+.+.+ .+...+..+..
T Consensus 567 ~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 567 IEPALALAQYYLGKGQL--KKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred hhHHHHHHHHHHHCCCH--HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 66777888999999999 99999999887643 55677888999999999999999999988754 35667888999
Q ss_pred HHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 005943 396 GCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDD 475 (668)
Q Consensus 396 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (668)
++.+.|++++|...|+++.... +.+..++..+...+...|+++.|..+++.+.+.. +.+...+..+...+.+.|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998753 4457788889999999999999999999998876 5677788888999999999999
Q ss_pred HHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccccc
Q 005943 476 GLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEY 553 (668)
Q Consensus 476 A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 553 (668)
|...|..+.. |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++...
T Consensus 722 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 799 (899)
T TIGR02917 722 AIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK- 799 (899)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-
Confidence 9999998764 666778888999999999999999999998863 456778888999999999999999999999853
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 005943 554 GLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVML 631 (668)
Q Consensus 554 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 631 (668)
.+++...+..+...+.+.|+ .+|+++++++ ...| +...+..+...+...|++++|...++++++..|.++.++..+
T Consensus 800 -~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 800 -APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred -CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 34568889999999999999 8899999887 3333 556777888889999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHh
Q 005943 632 SNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 632 ~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
+.++.+.|++++|.+++++|.+
T Consensus 878 ~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 878 ALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999998863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=310.88 Aligned_cols=623 Identities=11% Similarity=0.050 Sum_probs=505.5
Q ss_pred ChhhHHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCC---hhHHHHHHHH
Q 005943 2 DLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKN---IVSWTTMVTA 78 (668)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~ 78 (668)
++..+..+...+...|++++|...++.+.+.. +.+...+......+...|++++|...|+.+.+.+ ...+..+...
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 304 (899)
T TIGR02917 226 NPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGAS 304 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 45667778888899999999999999999875 3344444445556678899999999999886532 3344556667
Q ss_pred HhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh-
Q 005943 79 YTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT- 157 (668)
Q Consensus 79 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~- 157 (668)
+...|+++.|...|+.+.+.. + .+...+..+...+.+.|++++|...++.+.... +.+...+..+...+.+.|+.+
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYA-P-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 889999999999999998876 2 345677788889999999999999999998764 346778888999999999998
Q ss_pred -HHHHhhhhhhhhhcCCCchhhhhh---------hhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhcc
Q 005943 158 -RKLFDQYSNWAASAYGNVALWNSM---------LSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFM 227 (668)
Q Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 227 (668)
...|+...... ..+...+..+ ...+...+..+.+.... .......++..+.+.|++++|.++++.+
T Consensus 382 A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 382 AAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56666554421 1111112111 11134444444443322 2344566778889999999999999888
Q ss_pred CCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-CeeeHHHHHHHHHhCCChhHHHHH
Q 005943 228 PERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVALWNSMISGYVLNEQNEEAITL 306 (668)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 306 (668)
....+. ++.++..+...+...|++++|.+.|+++.+ ..| +...+..+...+...|++++|...
T Consensus 458 ~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 458 EKKQPD------------NASLHNLLGAIYLGKGDLAKAREAFEKALS----IEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred HHhCCC------------CcHHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 744332 567888999999999999999999999865 333 455677788899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC--
Q 005943 307 LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK-- 384 (668)
Q Consensus 307 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 384 (668)
|+++...+ +.+..++..+...+...|+. +.+...+..+.+.+ +.+...+..+...+.+.|++++|..+++.+.+
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNE--EEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99998764 34677888888999999999 99999999887764 34566777899999999999999999998864
Q ss_pred -CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHH
Q 005943 385 -KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSL 463 (668)
Q Consensus 385 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 463 (668)
.+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 366789999999999999999999999998764 3456778888899999999999999999988764 5567888999
Q ss_pred HHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVE 540 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 540 (668)
+..+...|++++|..+++.+.+ ++...+..+...+...|++++|+..|+++.+. .|+..++..+..++.+.|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHH
Confidence 9999999999999999998875 35667888899999999999999999999985 466677888899999999999
Q ss_pred HHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 005943 541 EAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLL 618 (668)
Q Consensus 541 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 618 (668)
+|.+.++++.. ..+.+...+..+...|...|++++|.+.|+++ ..+++...+..+...+...|+ .+|+..++++.
T Consensus 754 ~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 754 EAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 99999999985 33456888999999999999999999999988 334577889999999999999 88999999999
Q ss_pred hcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 619 ATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 619 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
+..|+++..+..++.++...|++++|.++++++.+.++.++
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 871 (899)
T TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871 (899)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Confidence 99999999999999999999999999999999999877433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-25 Score=246.56 Aligned_cols=612 Identities=12% Similarity=0.072 Sum_probs=436.2
Q ss_pred hHHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC--CChhHH----------
Q 005943 5 RIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR--KNIVSW---------- 72 (668)
Q Consensus 5 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~---------- 72 (668)
.+....+.+...++.+.|.+.+.++.... +.++..+..++..+.+.|+.++|.+.+++..+ |+...+
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 35666777778888888888888888654 34666777788888888888888888888754 322211
Q ss_pred -------HHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHH--HHHHHHhccCChHHHHHHHHHHHHcCCCCCchHh
Q 005943 73 -------TTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYS--AVLKACSLSGDLDLGRLIHERITREKLEYDTVLM 143 (668)
Q Consensus 73 -------~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (668)
....+.+.+.|++++|...|+.+.+.+ |+..... .........|+.++|.+.++.+.+..+ -+...+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~---p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~ 184 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA---PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLR 184 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC---CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHH
Confidence 223345777888888888888888765 3322211 111222345888888888888887642 244556
Q ss_pred hHHHhhhhhcCChh--HHHHhhhhhhhhhcCCCchhhhhhhh--------------------------cchhhHHHHHHh
Q 005943 144 NTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVALWNSMLS--------------------------GGKQVHAFCVKR 195 (668)
Q Consensus 144 ~~ll~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~ 195 (668)
..+-..+...|+.+ .+.++++.............|...+. .+...+......
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 66777777777766 44454443211000000111111100 011111111112
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 005943 196 GFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSS 275 (668)
Q Consensus 196 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 275 (668)
.-.|.... ......+...|++++|+..|++....++. +..++..+...+.+.|++++|+..|++..+
T Consensus 265 ~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~ 331 (1157)
T PRK11447 265 LADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK------------DSEALGALGQAYSQQGDRARAVAQFEKALA 331 (1157)
T ss_pred ccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222211 23356678899999999999998855443 678889999999999999999999999865
Q ss_pred hhhcCCCCee---eHHH------------HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHH
Q 005943 276 WAASAYGNVA---LWNS------------MISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFA 340 (668)
Q Consensus 276 ~~~~~~~~~~---~~~~------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a 340 (668)
..|+.. .|.. ....+.+.|++++|+..|++..... +.+...+..+-..+...|+. +.|
T Consensus 332 ----~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~--~eA 404 (1157)
T PRK11447 332 ----LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDY--AAA 404 (1157)
T ss_pred ----hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH--HHH
Confidence 334321 1221 2345678999999999999998863 23556677788899999999 999
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCC------------hhhHHHHHHHHHhcCCcHHHHH
Q 005943 341 LQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKD------------VVAWSGLIMGCTKHGLNSLAYL 408 (668)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~ 408 (668)
...++...+.. +.+...+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++
T Consensus 405 ~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~ 482 (1157)
T PRK11447 405 ERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAE 482 (1157)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHH
Confidence 99999988764 223455666666664 467899999998776431 1234556677889999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC--
Q 005943 409 LFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER-- 486 (668)
Q Consensus 409 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 486 (668)
.|++..+... -+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 483 ~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~ 560 (1157)
T PRK11447 483 LQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW 560 (1157)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc
Confidence 9999987642 245677788889999999999999999988754 334555555556677899999999999988642
Q ss_pred --CH---------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCC
Q 005943 487 --DV---------VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGL 555 (668)
Q Consensus 487 --~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 555 (668)
+. ..+..+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|++..+ .
T Consensus 561 ~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~ 632 (1157)
T PRK11447 561 NSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---R 632 (1157)
T ss_pred ChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---h
Confidence 11 1123456778899999999999872 345556777888899999999999999999984 3
Q ss_pred CC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc------h
Q 005943 556 EP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP-FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP------S 626 (668)
Q Consensus 556 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~ 626 (668)
.| +...+..++.+|...|++++|.+.++... ..| +...+..+..++...|++++|.++++++.+..|+++ .
T Consensus 633 ~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 633 EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL 712 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH
Confidence 55 57889999999999999999999999873 344 455667778888899999999999999999776544 3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.+..++.++...|++++|+..++....
T Consensus 713 ~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 713 VLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667789999999999999999999864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-22 Score=229.32 Aligned_cols=568 Identities=10% Similarity=0.039 Sum_probs=399.7
Q ss_pred hHHHHHHHHcCCChhHHHHhhhhcCC---CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchH---------
Q 005943 41 GNNLLSMYADFTSLNDAHKLFDEMAR---KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMY--------- 108 (668)
Q Consensus 41 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~--------- 108 (668)
.-...+.+...++.+.|.+.++++.. .|+..+..++..+.+.|+.++|...++++.+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~---P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA---PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CCChHHHHHHHHHHh
Confidence 34455677789999999999998854 367788999999999999999999999999987 555443
Q ss_pred --------HHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhh-hhhcCChh--HHHHhhhhhhhhhcCCCchh
Q 005943 109 --------SAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDM-YVKCGSLT--RKLFDQYSNWAASAYGNVAL 177 (668)
Q Consensus 109 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~--~~~~~~~~~~~~~~~~~~~~ 177 (668)
..+...+...|++++|.+.++.+.+... |+...-...... ....|+.+ .+.++.+..
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~----------- 175 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNA----------- 175 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHH-----------
Confidence 2233467889999999999999987643 232211111111 12234444 233332222
Q ss_pred hhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcc------hHHHH-------------
Q 005943 178 WNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVV------SWTGI------------- 238 (668)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~------------- 238 (668)
.. +-+...+..+...+...|+.++|++.|+++...... .|...
T Consensus 176 -----------------~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 176 -----------------DY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred -----------------hC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 21 224556778888889999999999999887532211 01000
Q ss_pred ----hhhcccC------------------chh-hHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-CeeeHHHHHHHH
Q 005943 239 ----IVGCFEC------------------SCF-TLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVALWNSMISGY 294 (668)
Q Consensus 239 ----l~~~~~~------------------~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~li~~~ 294 (668)
+..+... ++. ........+...|++++|+..|++..+ ..| +...+..+...+
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~----~~P~~~~a~~~Lg~~~ 313 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR----ANPKDSEALGALGQAY 313 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHH
Confidence 0000000 000 011234556778999999999988866 444 566788888888
Q ss_pred HhCCChhHHHHHHHHHHhCCCCC-CHHHHH------------HHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHH
Q 005943 295 VLNEQNEEAITLLSHIHSSGMCI-DSYTFT------------SALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSN 361 (668)
Q Consensus 295 ~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~------------~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (668)
.+.|++++|+..|++..+..... +...+. ..-..+.+.|++ +.|...++.+.+.. +.+...+..
T Consensus 314 ~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~--~eA~~~~~~Al~~~-P~~~~a~~~ 390 (1157)
T PRK11447 314 SQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL--AQAERLYQQARQVD-NTDSYAVLG 390 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC-CCCHHHHHH
Confidence 99999999999998887653221 111111 123345677788 88888888888763 234556667
Q ss_pred HHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC--------CcHHHHHHHHH
Q 005943 362 LIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQD--------VNQFIISSVLK 430 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~~ll~ 430 (668)
+...+...|++++|++.|+++.+. +...+..+...+. .++.++|...++.+...... .....+.....
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 888888899999999998887642 4445666666664 45778888887765332110 01123444556
Q ss_pred HhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHH
Q 005943 431 VCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEA 507 (668)
Q Consensus 431 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a 507 (668)
.+...|++++|...+++..+.. +-+...+..+...|.+.|++++|...++++.+ | +...+..+...+...++.++|
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 6778899999999999888765 44566777888899999999999999988753 3 444555555566778899999
Q ss_pred HHHHHHHHHCCCCCCHH---------HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHH
Q 005943 508 IAYFQEMIQSRLKPNEI---------TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 508 ~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A 622 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAA 622 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHH
Confidence 99888765432222221 123456678889999999998872 134566778899999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 579 EQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 579 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++.++++ ...| +...+..++..+...|++++|++.++.+.+..|+++..+..++.++...|++++|.++++.+.+...
T Consensus 623 ~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 623 RAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 9999988 3344 6778889999999999999999999999999999999999999999999999999999999988765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-21 Score=204.54 Aligned_cols=605 Identities=10% Similarity=0.019 Sum_probs=313.0
Q ss_pred cccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC--C-ChhHHHHHHHHHhcCCChhhHHH
Q 005943 14 GQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR--K-NIVSWTTMVTAYTSNKRPNWAIR 90 (668)
Q Consensus 14 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~ 90 (668)
...|++++|...|++.++.. +-++.++..|...|.+.|+.++|+..+++..+ | |...+.. +..+ +++.+|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~-La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS-LAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-HHHh---ccChhHHH
Confidence 44599999999999999876 34577888999999999999999999999865 3 3333443 3333 88899999
Q ss_pred HHHHHHhcCCCCCC-CchHHHHHHHH-----hccCChHHHHHHHHHHHHcCCCCCchHhhHH-HhhhhhcCChh--HHHH
Q 005943 91 LYNHMLEYGSVEPN-GFMYSAVLKAC-----SLSGDLDLGRLIHERITREKLEYDTVLMNTL-LDMYVKCGSLT--RKLF 161 (668)
Q Consensus 91 ~~~~m~~~~~~~p~-~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~--~~~~ 161 (668)
.|+++.+.. |+ ...+..+.... ..-.+.++|.+.++ .......|+..+.... .+.|...++++ .+++
T Consensus 130 ~ye~l~~~~---P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 130 TVEELLAQQ---KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHhC---CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999987 54 34444444430 22334466766666 4444455556656655 88899999877 5555
Q ss_pred hhhhhhhhhcCCCch----hhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccC-----CCCc
Q 005943 162 DQYSNWAASAYGNVA----LWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMP-----ERDV 232 (668)
Q Consensus 162 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~ 232 (668)
..+.+.......... .|...++. ...... .+..++-+...+..+...|.+.|+.++|.++++++. .++.
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al-~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLD-DRLLAL-QSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHH-hchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 555552111111111 11111111 122222 223444577788899999999999999999999988 2444
Q ss_pred chHHHHhhhcccC---------------chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHH--HH
Q 005943 233 VSWTGIIVGCFEC---------------SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISG--YV 295 (668)
Q Consensus 233 ~~~~~~l~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~--~~ 295 (668)
..|...+.-.... -....-.++..+.+.+.++.++++.. ..|.... ..+.. ..
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~r~~~~~ 353 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA--------TLPANEM--LEERYAVSV 353 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc--------CCCcchH--HHHHHhhcc
Confidence 4443333221110 11112223566666777776665533 2222221 12221 12
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHh-C-CCCccchHHHHHHHHHhcCC--
Q 005943 296 LNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTS-G-YELDYIVGSNLIDLYARLGN-- 371 (668)
Q Consensus 296 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~-- 371 (668)
..+...++...++.|.... .-+....-.+--.....|+. +.+..++...... + -.++....+.++..|.+.+.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQS--REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccH--HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 2345555555555555431 11333333333334455555 6666666665542 1 12233344456666666655
Q ss_pred -hHHHHHHHccCCC----------------------------C--ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC
Q 005943 372 -VKSALELFHRLPK----------------------------K--DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDV 420 (668)
Q Consensus 372 -~~~a~~~~~~~~~----------------------------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 420 (668)
...+..+-..+.. + +...|..+..++.. ++.++|+..+.+..... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 2223222111111 1 22333444444433 45555555444444332 3
Q ss_pred cHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCH---hHHHHHHHH
Q 005943 421 NQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDV---VSWTGIIVG 497 (668)
Q Consensus 421 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~ 497 (668)
+......+..++...|++++|...++.+... +|+...+..+..++.+.|++++|...+++..+.++ ..+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3332222233334455555555555544322 22222333344444555555555555554443111 111122222
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 576 (668)
....|++++|+..+++..+ +.|+...+..+..++.+.|++++|...+++.. ...| +...+..+..++...|+++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHH
Confidence 2233555555555555554 23444445555555555555555555555554 2233 2444445555555555555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 577 DAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 577 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+|++.+++. ...| +...+..+..++...|++++|+..+++++++.|++..+....++...+..+++.|.+.+++.-
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 555555544 2222 334445555555555555555555555555555555555555555555555555555554443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-20 Score=199.36 Aligned_cols=544 Identities=11% Similarity=0.011 Sum_probs=359.5
Q ss_pred HHcCCChhHHHHhhhhcCC--C-ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHH
Q 005943 48 YADFTSLNDAHKLFDEMAR--K-NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLG 124 (668)
Q Consensus 48 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 124 (668)
+...|++++|...|+...+ | +...+..+.+.|.+.|++++|+..+++..+.. |+...|..++..+ ++.++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChhH
Confidence 3345999999999999854 3 56688999999999999999999999999987 7766666665433 889999
Q ss_pred HHHHHHHHHcCCCCCchHhhHHHhh--------hhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhC
Q 005943 125 RLIHERITREKLEYDTVLMNTLLDM--------YVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRG 196 (668)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 196 (668)
..+++++.+..+. +..++..+... |.+.+..... +. .....
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~A-----------------------------L~-lr~~~ 176 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQ-----------------------------LN-DATFA 176 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHH-----------------------------HH-HhhhC
Confidence 9999999987543 22333222222 4433222222 22 11122
Q ss_pred CCCChhhHHHH-HHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHc-CCCHHHHHHHHHHhh
Q 005943 197 FEKEDVTLTSL-IDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSN-CNVLCEARKLFDQYS 274 (668)
Q Consensus 197 ~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 274 (668)
..|+....... ...|.+.|++++|+++++++.+.++. +......|...|.. .++ +.+..+++..
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl------------~~~~~~~L~~ay~q~l~~-~~a~al~~~~- 242 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL------------SAAERRQWFDVLLAGQLD-DRLLALQSQG- 242 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhhCH-HHHHHHhchh-
Confidence 22334434444 77788888888888888877755543 23334445555555 244 5555553321
Q ss_pred hhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-CCHHHHHHHH---------------------------
Q 005943 275 SWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMC-IDSYTFTSAL--------------------------- 326 (668)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t~~~ll--------------------------- 326 (668)
...+...+..+...+.+.|+.++|..+++++...-.. |+..++.-++
T Consensus 243 -----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (987)
T PRK09782 243 -----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVG 317 (987)
T ss_pred -----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHH
Confidence 3345555666666666666666666666665433211 2222222211
Q ss_pred ---HHHHhcccc---------------------------chHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHH
Q 005943 327 ---KACINLLNF---------------------------NSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSAL 376 (668)
Q Consensus 327 ---~~~~~~~~~---------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (668)
..+.+.+.. ...++...+..|.+.. +-+.....-+.....+.|+.++|.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 318 ATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred HHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHH
Confidence 111222222 0011112222221110 112233333344456778999999
Q ss_pred HHHccCCC-C-----ChhhHHHHHHHHHhcCC---cHHHHHH----------------------HHHHHHc-CC-CC--c
Q 005943 377 ELFHRLPK-K-----DVVAWSGLIMGCTKHGL---NSLAYLL----------------------FRDMINS-NQ-DV--N 421 (668)
Q Consensus 377 ~~~~~~~~-~-----~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~m~~~-~~-~~--~ 421 (668)
++|+.... + +....+-++..|.+.+. ..++..+ +...... +. ++ +
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~ 476 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYD 476 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCC
Confidence 99988765 2 22334466777777665 3344333 1111111 12 23 4
Q ss_pred HHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCHhHHHHHHHHHH
Q 005943 422 QFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCG 499 (668)
Q Consensus 422 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~ 499 (668)
...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. |+...+..+..++.
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all 553 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 5566666666655 78888998777766553 5544443445555789999999999997654 44455667778889
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHH
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
+.|++++|...+++..+.. |+. ..+..+.......|++++|...+++.. ...|+...+..+..++.+.|++++|
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999863 443 334444455567799999999999998 5578888999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 579 EQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 579 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...+++. ...| +...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+..+
T Consensus 629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 629 VSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999988 4455 5567777888899999999999999999999999999999999999999999999999999987765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-19 Score=171.61 Aligned_cols=382 Identities=13% Similarity=0.084 Sum_probs=297.1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhc
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAAS 279 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 279 (668)
-..+|+.+...+-..|++++|+.+++.+.+.++. ....|..+..++...|+.+.|...|.+..+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~------------fida~inla~al~~~~~~~~a~~~~~~alq---- 178 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK------------FIDAYINLAAALVTQGDLELAVQCFFEALQ---- 178 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch------------hhHHHhhHHHHHHhcCCCcccHHHHHHHHh----
Confidence 3567777888888888888888888887755443 456677777777777777777777777755
Q ss_pred CCCCeeeHHHHHH-HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccch
Q 005943 280 AYGNVALWNSMIS-GYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIV 358 (668)
Q Consensus 280 ~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 358 (668)
..|+.....+-+. -+...|+.++|...|.+..+.. | .-...
T Consensus 179 lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p------------------------------------~fAia 220 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--P------------------------------------CFAIA 220 (966)
T ss_pred cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--C------------------------------------ceeee
Confidence 5555443333222 2334566666666666655421 1 12344
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCCh---hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcc
Q 005943 359 GSNLIDLYARLGNVKSALELFHRLPKKDV---VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN-QFIISSVLKVCSC 434 (668)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 434 (668)
|+.|...+...|+...|+.-|++..+-|+ ..|-.|-..|...+.+++|...|.+.... .|+ ...+..+...|..
T Consensus 221 wsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 221 WSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYE 298 (966)
T ss_pred ehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEec
Confidence 55566667778888888888888776443 46777778888888888888888776543 444 4566677777888
Q ss_pred ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHH
Q 005943 435 LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYF 511 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~ 511 (668)
.|.++.|..-+++..+.. +.-+..|+.|..++-..|+..+|.+.|.+... | ...+.+.|...|...|.++.|..+|
T Consensus 299 qG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred cccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHH
Confidence 899999999998887764 34467899999999999999999999998774 4 4567888999999999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCC
Q 005943 512 QEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK 588 (668)
Q Consensus 512 ~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 588 (668)
....+ +.|.- ..++.|...|-..|++++|+..|++.. .++|+ ...|+.+...|...|+.+.|.+.+.+. .+.
T Consensus 378 ~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 378 LKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 99988 67764 478999999999999999999999998 67887 678999999999999999999999887 566
Q ss_pred CC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 589 PD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 589 p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
|. ...++.|...+...|+..+|++.|+.++++.|+.+.+|..++..+.---+|.+
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 64 45788899999999999999999999999999999999999887765555554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-18 Score=179.84 Aligned_cols=422 Identities=11% Similarity=0.009 Sum_probs=296.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC
Q 005943 203 TLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG 282 (668)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 282 (668)
.+......+.+.|++++|+..|++....++ ++..|..+...|.+.|++++|++.++...+ ..|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-------------~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~----l~p 191 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-------------DPVYYSNRAACHNALGDWEKVVEDTTAALE----LDP 191 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------chHHHHHHHHHHHHhCCHHHHHHHHHHHHH----cCC
Confidence 355667788999999999999998875543 445788889999999999999999999876 555
Q ss_pred -CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHH
Q 005943 283 -NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSN 361 (668)
Q Consensus 283 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (668)
+...|..+..++...|++++|+.-|......+-..+. ....++..... ..+........+. -+++...+..
T Consensus 192 ~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~------~~a~~~~~~~l~~-~~~~~~~~~~ 263 (615)
T TIGR00990 192 DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK------KFAESKAKEILET-KPENLPSVTF 263 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH------HHHHHHHHHHHhc-CCCCCCCHHH
Confidence 4567888899999999999999988776554211111 11111111111 1111111111111 1122222222
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCCh---hhHHHHHHH---HHhcCCcHHHHHHHHHHHHcC-CCC-cHHHHHHHHHHhc
Q 005943 362 LIDLYARLGNVKSALELFHRLPKKDV---VAWSGLIMG---CTKHGLNSLAYLLFRDMINSN-QDV-NQFIISSVLKVCS 433 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~ 433 (668)
+ ..+...........-+....+.+. ..+..+... ....+++++|.+.|++..+.+ ..| ....+..+...+.
T Consensus 264 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~ 342 (615)
T TIGR00990 264 V-GNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC 342 (615)
T ss_pred H-HHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 2 222222222222111221111111 111111111 123478899999999998865 234 3456677777788
Q ss_pred cccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 005943 434 CLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAY 510 (668)
Q Consensus 434 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 510 (668)
..|++++|...++...+.. +.....|..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..
T Consensus 343 ~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999988764 33456788888899999999999999998764 3577888999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC
Q 005943 511 FQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK 588 (668)
Q Consensus 511 ~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 588 (668)
|++..+. .| +...+..+..++.+.|++++|+..+++... ..+.+...+..+..++...|++++|.+.|++. ...
T Consensus 422 ~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 422 YQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 9999985 45 456778888899999999999999999884 22335788999999999999999999999986 333
Q ss_pred CCH-H-------HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 589 PDK-T-------IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 589 p~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
|+. . .++.....+...|++++|.++++++++++|++..++..++.++.+.|++++|++++++..+..
T Consensus 498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 421 1 112222223446999999999999999999999999999999999999999999999987653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-19 Score=168.88 Aligned_cols=427 Identities=15% Similarity=0.121 Sum_probs=320.8
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC
Q 005943 204 LTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGN 283 (668)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 283 (668)
...|..-..+.|++++|++.....-..|+. +....-.+-..+....+++.....-....+. ...-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t------------~~~~llll~ai~~q~~r~d~s~a~~~~a~r~---~~q~ 115 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT------------NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK---NPQG 115 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC------------cccceeeehhhhhcccchhhhhhhhhhhhhc---cchH
Confidence 455667778899999999988766644432 1222222333344444444433222221110 1223
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHH-H
Q 005943 284 VALWNSMISGYVLNEQNEEAITLLSHIHSSGMCI-DSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGS-N 361 (668)
Q Consensus 284 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 361 (668)
..+|..+...+-..|++++|+.+|+.+++. +| ....|..+..++...|+. +.+...+....+ +.|+..... .
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~--~~a~~~~~~alq--lnP~l~ca~s~ 189 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDL--ELAVQCFFEALQ--LNPDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCC--cccHHHHHHHHh--cCcchhhhhcc
Confidence 456677777777777777777777777663 34 345666666777777777 666666655544 234333222 2
Q ss_pred HHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhccccc
Q 005943 362 LIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN-QFIISSVLKVCSCLAS 437 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 437 (668)
+...+...|++++|...+.+..+- =.+.|+.|...+-..|+...|++.|++.+.. .|+ ...|..+-..|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 334445568899988888776543 2357999999999999999999999998754 344 3456667777777778
Q ss_pred hHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005943 438 LRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-VVSWTGIIVGCGQNGRAKEAIAYFQEM 514 (668)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 514 (668)
++.|..-+.+..... +.....+..+.-.|...|..+-|+..|++..+ |+ ...|+.|..++-..|+..+|...|.+.
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 888887777665543 33455666777778899999999999999875 54 568999999999999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-
Q 005943 515 IQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD- 590 (668)
Q Consensus 515 ~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~- 590 (668)
+. +.|+. .+.+.|...+...|.+++|..+|.... .+.|. ....+.|...|.++|++++|+..+++. .++|+
T Consensus 347 L~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 347 LR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 88 46664 478899999999999999999999987 66776 678899999999999999999999988 67786
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
...|+.+...|-..|+...|.+.+.+++..+|.-..++..|+.+|..+|++.+|+.-++...+..+.+|
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 458899999999999999999999999999999999999999999999999999999999999888444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-16 Score=157.95 Aligned_cols=578 Identities=14% Similarity=0.107 Sum_probs=391.6
Q ss_pred hhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC------CChhHHHHHHHHHhcCCChhhHHHHH
Q 005943 19 IKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR------KNIVSWTTMVTAYTSNKRPNWAIRLY 92 (668)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~ 92 (668)
.+.|.+.|...++.. ++++-.+---....-..|++..|+.+|..... +|+. -.+..++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 588888888888775 34433322222333356889999999988533 2332 22234456788889999999
Q ss_pred HHHHhcCCCCCC-CchHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhhh
Q 005943 93 NHMLEYGSVEPN-GFMYSAVLKACSLSGD---LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSN 166 (668)
Q Consensus 93 ~~m~~~~~~~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~~ 166 (668)
.+..+.+ |+ ..++..|...-....+ +..+.+++....... .-++...+.|-..|.-.|+.. ..+...+..
T Consensus 223 ~ralqLd---p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 223 ERALQLD---PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHhcC---hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 9998876 42 2233333322233333 444455554444322 235566667777777777766 222111111
Q ss_pred hhhhcCCCchhhhhhhhcchhhHHHHHHhCCC--CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhccc
Q 005943 167 WAASAYGNVALWNSMLSGGKQVHAFCVKRGFE--KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFE 244 (668)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 244 (668)
.-.. .-..+|-.+.++|-..|++++|...|.+..+.+...
T Consensus 299 ----------------------------~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~---------- 340 (1018)
T KOG2002|consen 299 ----------------------------NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN---------- 340 (1018)
T ss_pred ----------------------------hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC----------
Confidence 1100 123457788999999999999999998888544332
Q ss_pred CchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC-eeeHHHHHHHHHhCC----ChhHHHHHHHHHHhCCCCCCH
Q 005943 245 CSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGN-VALWNSMISGYVLNE----QNEEAITLLSHIHSSGMCIDS 319 (668)
Q Consensus 245 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~ 319 (668)
....+--|..+|.+.|+++.+...|+.+.. ..|| ..+...|...|...+ ..+.|..++.+....- ..|.
T Consensus 341 -~~l~~~GlgQm~i~~~dle~s~~~fEkv~k----~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 341 -FVLPLVGLGQMYIKRGDLEESKFCFEKVLK----QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred -ccccccchhHHHHHhchHHHHHHHHHHHHH----hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 134455688999999999999999999966 4554 344444445555553 3466666666655432 3455
Q ss_pred HHHHHHHHHHHhccccchHHHHHHH----HHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC-------Ch-
Q 005943 320 YTFTSALKACINLLNFNSRFALQVH----GLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK-------DV- 387 (668)
Q Consensus 320 ~t~~~ll~~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~- 387 (668)
..|..+-..+-..... .....+ +.+...+-.+.+...|.+...+...|.+..|...|.+.... +.
T Consensus 415 ~a~l~laql~e~~d~~---~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPW---ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred HHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 6666555555444332 223333 34556677788999999999999999999999999876532 22
Q ss_pred -----hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHH-HHHHHhccccchHhHHHHHHHHHHhCCCCchhHHH
Q 005943 388 -----VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS-SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLT 461 (668)
Q Consensus 388 -----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 461 (668)
.+-..+....-..++.+.|.+.|..+... .|+-.... .+.......++..+|...+....... ..++...+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars 568 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS 568 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence 12334556666778999999999999876 34443322 22222233467788888888776654 45666677
Q ss_pred HHHHHHHhcCChHHHHHHhccCC-----CCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCHH
Q 005943 462 SLIDMYLKCGEIDDGLALFKFMP-----ERDVVSWTGIIVGCGQ------------NGRAKEAIAYFQEMIQSRLKPNEI 524 (668)
Q Consensus 462 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~m~~~g~~p~~~ 524 (668)
.+.+.+.+...+..|..-|..+. .+|+.+.-.|.+.|.+ .+..++|+++|.+.+... +-|..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 77778888888888877554443 2465555556665532 246788999999988853 44667
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM----PFKPDKTIWASMLKA 600 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~ 600 (668)
.-+.+.-.++..|++..|..+|...... ..-...+|-.+.++|..+|++..|+++|+.. ..+.+......|..+
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 7788888899999999999999999854 2345678889999999999999999999876 234578888999999
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-------------------CChhhHHHHHHHHHhcCC
Q 005943 601 CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL-------------------GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~ 656 (668)
+.+.|.+.+|.+....+....|.++...+.++.+..+. +..+.|.++|..|.+.+.
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999888888766543 346777777777776655
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=175.38 Aligned_cols=290 Identities=11% Similarity=0.083 Sum_probs=226.9
Q ss_pred HHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc---HHHHHHHHHHhccccch
Q 005943 365 LYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN---QFIISSVLKVCSCLASL 438 (668)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~ 438 (668)
.+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 455668888888888887643 445677788888888888888888888877543322 24567777788888888
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC------HhHHHHHHHHHHhcCChHHHHHH
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD------VVSWTGIIVGCGQNGRAKEAIAY 510 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~ 510 (668)
+.|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+ |+ ...+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888887653 45667788888889999999999988888764 21 12355677788899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005943 511 FQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEM-PF 587 (668)
Q Consensus 511 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 587 (668)
|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ..++..++.+|.+.|++++|...++++ ..
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998853 233557788888999999999999999999843 343 466888999999999999999999987 45
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---cCChhhHHHHHHHHHhcCC-CCCc
Q 005943 588 KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT---LGMWDSLSKVRKAGKKLGE-KKAG 660 (668)
Q Consensus 588 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~-~~~~ 660 (668)
.|+...+..++..+.+.|++++|..+++++.+..|++.. +..+...+.. .|+.+++..+++++.++++ ++|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 677777788888899999999999999999999998764 4444444443 5699999999999999888 7775
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-16 Score=146.33 Aligned_cols=426 Identities=11% Similarity=0.036 Sum_probs=284.5
Q ss_pred hHHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcC--CChhHH-HHhhhhc-----------------
Q 005943 5 RIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADF--TSLNDA-HKLFDEM----------------- 64 (668)
Q Consensus 5 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~~~~a-~~~~~~~----------------- 64 (668)
+-++++.. ...|.++++--+++.|.+.|++.+...-..|++.-+-. .++.-| ++.|-.|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 34455543 34678999999999999999888877777776654432 222211 2223222
Q ss_pred ------CCCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 005943 65 ------ARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEY 138 (668)
Q Consensus 65 ------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 138 (668)
..++..+|..||.++|+--..+.|.++|++-.+..+. .+..+||.+|.+-+-..+ .+++.+|.+..+.|
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYSVG----KKLVAEMISQKMTP 271 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC
Confidence 2235668999999999999999999999999987767 899999999987654333 78999999999999
Q ss_pred CchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChH
Q 005943 139 DTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEID 218 (668)
Q Consensus 139 ~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 218 (668)
|..|+|+++.+.++.|++..+ ...+.+++.+|.+.|++|+..+|..+|..+++.++..
T Consensus 272 nl~TfNalL~c~akfg~F~~a----------------------r~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDA----------------------RKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred chHhHHHHHHHHHHhcchHHH----------------------HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 999999999999999987611 1234578888999999999999999999999998875
Q ss_pred H-HHHHhhccC--------CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhh--hcCCCC---e
Q 005943 219 D-GLALFNFMP--------ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWA--ASAYGN---V 284 (668)
Q Consensus 219 ~-A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~---~ 284 (668)
+ |..++.++. +|-..+ |...|...+..|....+.+-|.++-.-+.... .-..|+ .
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~-----------d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~ 398 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPT-----------DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRN 398 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCc-----------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHH
Confidence 4 444444433 222111 77888899999999999999988876653211 112222 2
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHH
Q 005943 285 ALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLID 364 (668)
Q Consensus 285 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (668)
.-|..+....|+....+.....|+.|+..-.-|++.+...++++....+.+ +...+++..++..|...+.....-++.
T Consensus 399 fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~--e~ipRiw~D~~~~ght~r~~l~eeil~ 476 (625)
T KOG4422|consen 399 FYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRL--EVIPRIWKDSKEYGHTFRSDLREEILM 476 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcc--hhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 235667778888999999999999999998999999999999999999999 999999999998886555444444444
Q ss_pred HHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhc--CCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHH
Q 005943 365 LYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKH--GLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGK 442 (668)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 442 (668)
.+++..- .++...-..+-...++. .-.+.....-..|. .........+.+.-.+.+.|..++|.
T Consensus 477 ~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~ 542 (625)
T KOG4422|consen 477 LLARDKL------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAW 542 (625)
T ss_pred HHhcCCC------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHH
Confidence 4433220 11111111111111110 00111111112222 22334444444555556666666666
Q ss_pred HHHHHHHHhCC-CCchhHHH---HHHHHHHhcCChHHHHHHhccCCC
Q 005943 443 QVHAFCVKRGF-EKEDITLT---SLIDMYLKCGEIDDGLALFKFMPE 485 (668)
Q Consensus 443 ~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~ 485 (668)
+++..+.+.+. .|.....| -+++.-.+...+..|..+++-+..
T Consensus 543 e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 543 EMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666644332 22222333 444555556666666666665543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-17 Score=166.97 Aligned_cols=294 Identities=15% Similarity=0.089 Sum_probs=193.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcC
Q 005943 291 ISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLG 370 (668)
Q Consensus 291 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (668)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++ +.+..+++.+...+..++..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~------------- 105 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEV--DRAIRIHQNLLSRPDLTREQ------------- 105 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcH--HHHHHHHHHHhcCCCCCHHH-------------
Confidence 445567788888888888887753 12333455555555555555 55555555444422111100
Q ss_pred ChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHH
Q 005943 371 NVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVK 450 (668)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 450 (668)
....+..+...|.+.|++++|..+|+++.+.. +++..++..+...+.+.|++++|...++.+.+
T Consensus 106 ---------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 106 ---------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred ---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 01223444444555555555555555554331 22344445555555555555555555555544
Q ss_pred hCCCCc----hhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 005943 451 RGFEKE----DITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE 523 (668)
Q Consensus 451 ~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 523 (668)
.+..+. ...+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|+++++++.+.+.....
T Consensus 170 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 170 LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 332211 12345566777788888888888887764 3 3557777888999999999999999999875322223
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACE 602 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 602 (668)
.++..+..++...|++++|...++++.. ..|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 5678888999999999999999999884 3677777788999999999999999999876 56789888888887765
Q ss_pred h---hCCHHHHHHHHHHHHh
Q 005943 603 T---HNNTKLVSIIAEQLLA 619 (668)
Q Consensus 603 ~---~~~~~~a~~~~~~~~~ 619 (668)
. .|+.+++..+++++.+
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hccCCccchhHHHHHHHHHH
Confidence 4 5588888888888876
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-16 Score=169.91 Aligned_cols=401 Identities=9% Similarity=0.010 Sum_probs=301.3
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 325 (668)
++......+....-.|+.++|++++...... ...+...+..+...+...|++++|..++++..+.. +.+......+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~---~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVH---MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4566677888899999999999999998431 22234458889999999999999999999988752 2345566777
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCC
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGL 402 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 402 (668)
...+...|+. +.|...++...+.. +.+.. +..+..++...|+.++|+..++++.+. +...+..+..++...+.
T Consensus 90 a~~l~~~g~~--~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQY--DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCH--HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 7888899999 99999999998773 33444 778888999999999999999988753 55566677888888999
Q ss_pred cHHHHHHHHHHHHcCCCCcH------HHHHHHHHHh-----ccccch---HhHHHHHHHHHHh-CCCCchh-HHH-H---
Q 005943 403 NSLAYLLFRDMINSNQDVNQ------FIISSVLKVC-----SCLASL---RRGKQVHAFCVKR-GFEKEDI-TLT-S--- 462 (668)
Q Consensus 403 ~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~-~--- 462 (668)
.+.|+..++.... .|+. ......+... ...+++ ++|...++.+.+. ...|+.. .+. .
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999998876653 2321 1112222222 122334 6778888888754 2233221 111 1
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCC---Hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHh
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPERD---VV-SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-----EITFLGVLSAC 533 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~ 533 (668)
.+.++...|++++|+..|+.+.+.+ +. ....+..+|...|++++|+..|+++.+. .|. ......+..++
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHH
Confidence 1234457799999999999988632 11 2223577899999999999999998874 332 23466667788
Q ss_pred hcCCCHHHHHHHHHhcccccC----------CCCC---hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 534 RHAGLVEEAWTIFTSMKPEYG----------LEPH---LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
...|++++|..+++.+..... ..|+ ...+..++..+...|++++|+++++++ ...| +...+..+.
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999885310 1122 234567788999999999999999998 3334 667888888
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
..+...|++++|++.++++++.+|++...+..++..+...|++++|..+++++.+..+.++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 8999999999999999999999999999999999999999999999999999998776333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-16 Score=165.51 Aligned_cols=358 Identities=11% Similarity=-0.004 Sum_probs=258.7
Q ss_pred HHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccc
Q 005943 257 YSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFN 336 (668)
Q Consensus 257 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 336 (668)
+.+..+++.-.-+|....+.......+......++..+.+.|++++|..+++........+ ...+..+..+....|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~- 92 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQP- 92 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCH-
Confidence 3455556555555555433222222233445556777888899999999988887764333 33444445666668888
Q ss_pred hHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 005943 337 SRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK--K-DVVAWSGLIMGCTKHGLNSLAYLLFRDM 413 (668)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 413 (668)
+.|...++.+.... +.+...+..+...+...|++++|...+++... | +...+..+...+...|+.++|...++.+
T Consensus 93 -~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 -DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred -HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 88888888877653 33455677788888899999999999888764 3 5567888888899999999999999888
Q ss_pred HHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhH
Q 005943 414 INSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVS 490 (668)
Q Consensus 414 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~ 490 (668)
......+....+ .+ ..+...|++++|...++.+.+....++......+...+.+.|++++|+..+++... | +...
T Consensus 171 ~~~~P~~~~a~~-~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~ 248 (656)
T PRK15174 171 AQEVPPRGDMIA-TC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL 248 (656)
T ss_pred HHhCCCCHHHHH-HH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 766543333222 22 34677899999999888877664333444455566778889999999988887764 3 4667
Q ss_pred HHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHH
Q 005943 491 WTGIIVGCGQNGRAKE----AIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYC 564 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~----a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 564 (668)
+..+...+...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...+++... ..|+ ...+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~ 323 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 7788888899998885 78889888874 454 45788888889999999999999998874 3554 566777
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM-PFKPDKTIW-ASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
+..+|.+.|++++|...++++ ...|+...+ ..+..++...|+.++|...|+++.+..|++.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 888899999999999999887 345655443 3345667888999999999999999888753
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-15 Score=158.07 Aligned_cols=451 Identities=10% Similarity=0.046 Sum_probs=294.3
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCc--hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhh
Q 005943 72 WTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGF--MYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDM 149 (668)
Q Consensus 72 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 149 (668)
|...|. ..++|++..|+..|++..+.. |+.. .+ .++..+...|+.++|...++... .|+..
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~-------- 100 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNI-------- 100 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCC--------
Confidence 443333 467888888888888888876 5542 33 77777778888888888888775 11111
Q ss_pred hhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCC
Q 005943 150 YVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPE 229 (668)
Q Consensus 150 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 229 (668)
+......+...+...|++++|+++|+++.+
T Consensus 101 --------------------------------------------------~~~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 101 --------------------------------------------------SSRGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred --------------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111122234567778899999999998886
Q ss_pred CCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHH
Q 005943 230 RDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSH 309 (668)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 309 (668)
.++. ++.++..++..+...++.++|++.++++.. ..|+...+-.++..+...++..+|+..+++
T Consensus 131 ~dP~------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~----~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 131 KDPT------------NPDLISGMIMTQADAGRGGVVLKQATELAE----RDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred hCCC------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcc----cCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 5554 566667778888888999999999998865 556655554443444445566569999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhh
Q 005943 310 IHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVA 389 (668)
Q Consensus 310 m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 389 (668)
+.+.. +-+...+..+..++.+.|-. ..+.++... .|+..+-...... ..+.|.+..+....++..
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~--~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~- 259 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIV--EPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS- 259 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCc--HHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccccc-
Confidence 88763 22344455555666665555 444433322 1111111100000 011111111111000000
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHc-CCCCcHH-----HHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHH
Q 005943 390 WSGLIMGCTKHGLNSLAYLLFRDMINS-NQDVNQF-----IISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSL 463 (668)
Q Consensus 390 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 463 (668)
- - .+.--.+.|+.-++.+... +..|... ...-.+-++...++..++...++.+...+.+....+-.++
T Consensus 260 ~---~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 260 E---T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred c---h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 0 0 0001234455555665542 2223221 1223344677788899999999999888877677788889
Q ss_pred HHHHHhcCChHHHHHHhccCCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC-
Q 005943 464 IDMYLKCGEIDDGLALFKFMPER---------DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL-----------KPN- 522 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~- 522 (668)
.++|...+++++|..+|.++..+ +......|.-++...+++++|..+++++.+.-- .||
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 99999999999999999987542 222346788899999999999999999987311 122
Q ss_pred -HH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 523 -EI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 523 -~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
-. .+..++..+...|+..+|++.++++.. .-+-|......+.+++...|.+.+|.+.++.. ...| +..+....+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 22 345566678899999999999999974 33447889999999999999999999999776 3455 455666677
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKY 628 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 628 (668)
.++...+++++|..+.+.+.+..|+++.+-
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 778888999999999999999999987443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-15 Score=160.72 Aligned_cols=249 Identities=12% Similarity=0.017 Sum_probs=173.8
Q ss_pred CChHHHHHHHccCCCC------ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHH
Q 005943 370 GNVKSALELFHRLPKK------DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQ 443 (668)
Q Consensus 370 ~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 443 (668)
+.+++|.+.|+...+. ....|+.+...+...|++++|+..|++..+.. +-....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555666655554421 23345566666667777777777777766542 1224455666666667777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 005943 444 VHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK 520 (668)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 520 (668)
.++...+.. +.+...+..+...+...|++++|...|++..+ | +...+..+..++.+.|++++|+..|++..+. .
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~ 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--F 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 777766653 44567778888888888899999888887764 3 4566777888888899999999999988874 4
Q ss_pred C-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCCh-h-------HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 005943 521 P-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL-E-------HYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD 590 (668)
Q Consensus 521 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 590 (668)
| +...+..+..++...|++++|...|++... +.|+. . .++.....+...|++++|.+++++. ...|+
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4 456788888888899999999999888773 33321 1 1122223344468999999999876 44453
Q ss_pred -HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 591 -KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 591 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
...+..+...+.+.|++++|...|+++.++.+...
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 44677888888999999999999999988776543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-14 Score=147.33 Aligned_cols=558 Identities=11% Similarity=0.041 Sum_probs=370.2
Q ss_pred hhHHHHhhhhcCCCChh-HHHHHHHHH--hcCCChhhHHHHHHHHHhcCC-CCCCCchHHHHHHHHhccCChHHHHHHHH
Q 005943 54 LNDAHKLFDEMARKNIV-SWTTMVTAY--TSNKRPNWAIRLYNHMLEYGS-VEPNGFMYSAVLKACSLSGDLDLGRLIHE 129 (668)
Q Consensus 54 ~~~a~~~~~~~~~~~~~-~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 129 (668)
++.|...|....+.++. ....+.+++ ...|++..|+.+|........ ..||.. -.+-.++.+.|+.+.|...|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 58888888887553222 223344443 456899999999999766441 114432 223355578999999999999
Q ss_pred HHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHH
Q 005943 130 RITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSL 207 (668)
Q Consensus 130 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 207 (668)
...+-.+ -++.++..|--.-....+.+ ...+..+.. .-...+ -++...+.|
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~------------------------ay~~n~--~nP~~l~~L 276 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQR------------------------AYKENN--ENPVALNHL 276 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHH------------------------HHhhcC--CCcHHHHHH
Confidence 9886543 12222222211111111111 111111111 111112 356677888
Q ss_pred HHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCe--e
Q 005943 208 IDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNV--A 285 (668)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~ 285 (668)
...|.-.|+++.+..+...+....... -+ -...|.-+.++|...|++++|...|....+ ..|+. .
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~---~~------~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k----~~~d~~~l 343 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENK---SI------KAESFYQLGRSYHAQGDFEKAFKYYMESLK----ADNDNFVL 343 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhh---HH------HHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cCCCCccc
Confidence 899999999999999988777433110 00 346688899999999999999999998865 44544 4
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCC---CCccchHHHH
Q 005943 286 LWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGY---ELDYIVGSNL 362 (668)
Q Consensus 286 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l 362 (668)
.+--+.+.+.+.|+.+.+...|+..... .+-+..|..++-..|...+.- ......-..+...+. +.|...|-.+
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~--~~~~d~a~~~l~K~~~~~~~d~~a~l~l 420 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKK--QEKRDKASNVLGKVLEQTPVDSEAWLEL 420 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhh--hHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 4556788999999999999999998874 233445555555555554322 222233333333333 3355566555
Q ss_pred HHHHHhcCCh------HHHHHHHccCC-CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHc---CCCCcH------HHHH
Q 005943 363 IDLYARLGNV------KSALELFHRLP-KKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINS---NQDVNQ------FIIS 426 (668)
Q Consensus 363 ~~~~~~~~~~------~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~ 426 (668)
...+.....+ ..|.+++.... ...+...|.+.......|++++|...|...... ...++. .+--
T Consensus 421 aql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 421 AQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 5555544333 33333333322 246677888999999999999999999987655 223333 2233
Q ss_pred HHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCC
Q 005943 427 SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGR 503 (668)
Q Consensus 427 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 503 (668)
.+.......++.+.|.+.+..+.+.. +.-+..|-.+.-..-..++..+|...+..... .++..+..+...+.+...
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 34455667789999999999988763 22223333333222334677788888887764 566677778878888888
Q ss_pred hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc------------CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhh
Q 005943 504 AKEAIAYFQEMIQS-RLKPNEITFLGVLSACRH------------AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLG 570 (668)
Q Consensus 504 ~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 570 (668)
+..|.+-|....+. ...+|..+...|...|.. .+..+.|+++|.+..+ .-+.|...-+-+.-+++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 88888877666554 224677777777665532 2346788888888874 33347888889999999
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCChhhHHH
Q 005943 571 QAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLAT--SPEDPSKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~ 646 (668)
..|++.+|..+|.+.. ......+|-.+...|...|++-.|+++|+...+. ..+++.+...|++++.+.|++.+|.+
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999883 2235567889999999999999999999999883 35578899999999999999999999
Q ss_pred HHHHHHhcCCCCC
Q 005943 647 VRKAGKKLGEKKA 659 (668)
Q Consensus 647 ~~~~~~~~~~~~~ 659 (668)
.+.......+.+|
T Consensus 738 ~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 738 ALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHHHhCCccc
Confidence 9998887777444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-15 Score=160.16 Aligned_cols=406 Identities=10% Similarity=0.006 Sum_probs=302.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA 278 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 278 (668)
.+..-..-.+......|+.++|++++......++. +...+..+...+...|++++|..+|++..+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~------------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~--- 77 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQL------------PARGYAAVAVAYRNLKQWQNSLTLWQKALS--- 77 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence 34444555677788899999999999988753322 455688999999999999999999999866
Q ss_pred cCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccc
Q 005943 279 SAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYI 357 (668)
Q Consensus 279 ~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (668)
..| +...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+. +.|...++.+.+.... +..
T Consensus 78 -~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~--~~Al~~l~~al~~~P~-~~~ 151 (765)
T PRK10049 78 -LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRH--WDELRAMTQALPRAPQ-TQQ 151 (765)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCH--HHHHHHHHHHHHhCCC-CHH
Confidence 444 45567788888999999999999999998762 33444 77777888889999 9999999999886432 445
Q ss_pred hHHHHHHHHHhcCChHHHHHHHccCCCCChh--------hHHHHHHHHHh-----cCCc---HHHHHHHHHHHHc-CCCC
Q 005943 358 VGSNLIDLYARLGNVKSALELFHRLPKKDVV--------AWSGLIMGCTK-----HGLN---SLAYLLFRDMINS-NQDV 420 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~-----~~~~---~~a~~~~~~m~~~-~~~~ 420 (668)
.+..+..++...+..+.|.+.++.... ++. ....++..... .+++ ++|++.++.+... ...|
T Consensus 152 ~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 152 YPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 555677888889999999999988776 211 12222332221 1223 6788889988864 2233
Q ss_pred cHH-HHH----HHHHHhccccchHhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-----
Q 005943 421 NQF-IIS----SVLKVCSCLASLRRGKQVHAFCVKRGFE-KEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD----- 487 (668)
Q Consensus 421 ~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----- 487 (668)
+.. .+. ..+.++...++.++|...|+.+.+.+.+ |+ .....+..+|...|++++|+..|+++.. |.
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 321 111 1133445679999999999999887632 22 2223357789999999999999998764 22
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHhhcCCCHHHHHHHHHhccccc
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR-----------LKPNE---ITFLGVLSACRHAGLVEEAWTIFTSMKPEY 553 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 553 (668)
......+..++...|++++|...++++.+.. -.|+. ..+..+...+...|++++|++.++++..
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-- 387 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-- 387 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 2345566778899999999999999998752 11332 2455677788899999999999999984
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 554 GLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 554 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
..+-+...+..++.++...|++++|++.+++. ...|+ ...+......+...|++++|+.+++++++..|+++.+..
T Consensus 388 ~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 388 NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33335888999999999999999999999988 45565 556666777788999999999999999999999985544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-16 Score=144.86 Aligned_cols=280 Identities=12% Similarity=0.085 Sum_probs=210.3
Q ss_pred HHHHhcCChHHHHHHHccCCCCChhhHHHHHH-----HHHhc-CCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccc
Q 005943 364 DLYARLGNVKSALELFHRLPKKDVVAWSGLIM-----GCTKH-GLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLAS 437 (668)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~-----~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 437 (668)
..+.+.|+++.|.++++-+.++|..+-.+... -|.+. .++..|.+.-+..+... +-+....+.--+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 35778999999999998888765544333222 22222 34555655544443221 1222222222223345689
Q ss_pred hHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005943 438 LRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEM 514 (668)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 514 (668)
+++|...+++............||. .-.+-..|+.++|++.|-++.. .++...-.+...|-...+...|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999998887665545555553 3346678999999999987653 56777778888899999999999999887
Q ss_pred HHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHH
Q 005943 515 IQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTI 593 (668)
Q Consensus 515 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 593 (668)
... ++.|+.....|...|-+.|+...|.+.+-+--+ -++-+.++..-|...|....-+++|..+|++. -+.|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 764 455677889999999999999999998776653 56668999999999999999999999999998 47899999
Q ss_pred HHHHHHHHH-hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHH
Q 005943 594 WASMLKACE-THNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 594 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
|..++..|. +.|++++|..+|+.+....|.+..++..|++++...|.. ++.++-+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHH
Confidence 999998865 689999999999999999999999999999999998863 3444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.8e-16 Score=162.31 Aligned_cols=352 Identities=11% Similarity=-0.050 Sum_probs=273.9
Q ss_pred HhCCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCCh
Q 005943 295 VLNEQNEEAITLLSHIHSSG--MCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNV 372 (668)
Q Consensus 295 ~~~~~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 372 (668)
.+..+|+..--.|....++. -.-+......++..+...|+. +.+..++.........+....+ .++.+....|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~ 92 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDET--DVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQP 92 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCc--chhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCH
Confidence 44555555444443332210 112233455567788888998 9999999888877655544444 455667789999
Q ss_pred HHHHHHHccCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHH
Q 005943 373 KSALELFHRLPK--K-DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCV 449 (668)
Q Consensus 373 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 449 (668)
++|...++++.. | +...+..+...+.+.|++++|...+++..... +.+...+..+...+...|+.++|...++.+.
T Consensus 93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999875 2 55678888899999999999999999998753 3346677888889999999999999999887
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 005943 450 KRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEIT 525 (668)
Q Consensus 450 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 525 (668)
..... +...+..+ ..+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 66422 33333333 3478899999999999987642 23344556778899999999999999999853 334567
Q ss_pred HHHHHHHhhcCCCHHH----HHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 526 FLGVLSACRHAGLVEE----AWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
+..+...+...|++++ |...+++... ..| +...+..+...+.+.|++++|...+++. ...| +...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7888889999999986 8999999883 456 4778999999999999999999999988 3445 455677788
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.++.+.|++++|...++++.+..|.+...+..++.++...|++++|...+++..+..+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 8899999999999999999999999887777788899999999999999999988766
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-13 Score=145.07 Aligned_cols=438 Identities=10% Similarity=-0.014 Sum_probs=272.0
Q ss_pred HHHHcCCChhHHHHhhhhcCC--CCh--hHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHH-HH--HHHHhcc
Q 005943 46 SMYADFTSLNDAHKLFDEMAR--KNI--VSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYS-AV--LKACSLS 118 (668)
Q Consensus 46 ~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~-~l--l~~~~~~ 118 (668)
-...+.|+++.|+..|++..+ |+. ..+ .++..+...|+.++|+..+++... |+...+. .+ ...+...
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-----p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-----SMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-----CCCCCHHHHHHHHHHHHHc
Confidence 345688888899988888865 332 133 777888888888999888888872 4333332 22 4566777
Q ss_pred CChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCC
Q 005943 119 GDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFE 198 (668)
Q Consensus 119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 198 (668)
|++++|.++++.+.+..+.
T Consensus 116 gdyd~Aiely~kaL~~dP~------------------------------------------------------------- 134 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT------------------------------------------------------------- 134 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-------------------------------------------------------------
Confidence 8999999999888776431
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA 278 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 278 (668)
+...+..++..+...++.++|++.++.+...++. ...+..++..+...++..+|++.++++..
T Consensus 135 -n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-------------~~~~l~layL~~~~~~~~~AL~~~ekll~--- 197 (822)
T PRK14574 135 -NPDLISGMIMTQADAGRGGVVLKQATELAERDPT-------------VQNYMTLSYLNRATDRNYDALQASSEAVR--- 197 (822)
T ss_pred -CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-------------hHHHHHHHHHHHhcchHHHHHHHHHHHHH---
Confidence 2233345566677778888888888877765542 22333444444445666558888888765
Q ss_pred cCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccc
Q 005943 279 SAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYI 357 (668)
Q Consensus 279 ~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (668)
..| +...+..+..++.+.|-...|.++..+- |+-.+=.... ..-.......++.+..++..
T Consensus 198 -~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~-----------~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 198 -LAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYR-----------QLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred -hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHH-----------HHHHHHHHHHHhhccccccc
Confidence 445 4555667777778888877777666542 2111111000 00000011111111111100
Q ss_pred hHHHHHHHHHhcCChHHHHHHHccCC----C-CC--h---hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHH
Q 005943 358 VGSNLIDLYARLGNVKSALELFHRLP----K-KD--V---VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISS 427 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~-~~--~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 427 (668)
--. +---.+.|+.-++.+. . |. . .+.--.+-++...|+..++++.|+.|...+.+....+-..
T Consensus 260 ~~~-------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 ETE-------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred chh-------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 000 0001122222222211 1 11 0 1112234456666777777777777777776656667777
Q ss_pred HHHHhccccchHhHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C--------------
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRG-----FEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-------------- 486 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-------------- 486 (668)
+..+|...+.+++|..++..+.... .+++......|.-+|...+++++|..+++.+.+ |
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 7777777777777777777765432 122333346677777777888888777776654 1
Q ss_pred -CH-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHH
Q 005943 487 -DV-VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYY 563 (668)
Q Consensus 487 -~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 563 (668)
|- ..+..++..+...|+..+|++.++++... -+-|......+.+.+...|.+.+|++.++... ...|+ ..+..
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~ 488 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILER 488 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHH
Confidence 11 23445677788999999999999999875 35577788899999999999999999998876 45674 67777
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWAS 596 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 596 (668)
..+..+...|++.+|..+.+++ ...|+......
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 8888999999999999999877 34455444333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-14 Score=131.95 Aligned_cols=440 Identities=11% Similarity=0.060 Sum_probs=286.5
Q ss_pred hhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHh--ccCChHHH-HHHHHHHHHcCCCCCchHhhH
Q 005943 69 IVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACS--LSGDLDLG-RLIHERITREKLEYDTVLMNT 145 (668)
Q Consensus 69 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ 145 (668)
+.+=|.+++. ..+|...++.-+|+.|...|+. .+...-..|+..-+ ...++--| .+.|-.|...|-. +..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 3355666664 5667888888888888888865 55555555554332 23333222 1233333333322 11222
Q ss_pred HHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhh
Q 005943 146 LLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFN 225 (668)
Q Consensus 146 ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (668)
+.|+..+-+|+..+ .+..||..+|.++|+-...+.|.++++
T Consensus 191 ------K~G~vAdL~~E~~P---------------------------------KT~et~s~mI~Gl~K~~~~ERA~~L~k 231 (625)
T KOG4422|consen 191 ------KSGAVADLLFETLP---------------------------------KTDETVSIMIAGLCKFSSLERARELYK 231 (625)
T ss_pred ------ccccHHHHHHhhcC---------------------------------CCchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 33433333333333 478899999999999999999999999
Q ss_pred ccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhH---
Q 005943 226 FMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEE--- 302 (668)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--- 302 (668)
+........ +..+||.+|.+..-.-+ .++..+|.+. ...||..|+|+++.+..+.|+++.
T Consensus 232 E~~~~k~kv-----------~~~aFN~lI~~~S~~~~----K~Lv~EMisq--km~Pnl~TfNalL~c~akfg~F~~ar~ 294 (625)
T KOG4422|consen 232 EHRAAKGKV-----------YREAFNGLIGASSYSVG----KKLVAEMISQ--KMTPNLFTFNALLSCAAKFGKFEDARK 294 (625)
T ss_pred HHHHhhhee-----------eHHhhhhhhhHHHhhcc----HHHHHHHHHh--hcCCchHhHHHHHHHHHHhcchHHHHH
Confidence 988444333 45666666655433222 6677777543 388999999999999999998765
Q ss_pred -HHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHH----HhCCCC----ccchHHHHHHHHHhcCChH
Q 005943 303 -AITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIV----TSGYEL----DYIVGSNLIDLYARLGNVK 373 (668)
Q Consensus 303 -a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~----~~~~~~----~~~~~~~l~~~~~~~~~~~ 373 (668)
|++++.+|++-|+.|...+|..+|..+++.++.- ..+..+..++. -..++| |...+...+..|.+..+.+
T Consensus 295 aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~-k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~ 373 (625)
T KOG4422|consen 295 AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ-KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLE 373 (625)
T ss_pred HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch-hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHH
Confidence 5678899999999999999999999999888762 22333333332 233433 4566778888898999999
Q ss_pred HHHHHHccCCCC-----------ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHH
Q 005943 374 SALELFHRLPKK-----------DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGK 442 (668)
Q Consensus 374 ~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 442 (668)
.|.++-.-+... ...-|..+....++....+.....|+.|+..-+-|++.+...++++....+.++-.-
T Consensus 374 LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ip 453 (625)
T KOG4422|consen 374 LAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIP 453 (625)
T ss_pred HHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHH
Confidence 998877655432 122356677788888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005943 443 QVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVV---SWTGIIVGCGQNGRAKEAIAYFQEMIQSRL 519 (668)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 519 (668)
++|..++..|.........-+...+++.. ..|+.. -+.....-|+ ..-.+.....-.+|.+...
T Consensus 454 Riw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 454 RIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccC
Confidence 99999999886554444433333333322 122211 1111111111 1111222223345555444
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHH---HHHHHhhhcCChHHHHHHHHhC
Q 005943 520 KPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYY---CMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 520 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
.| ...+.+.-.+.+.|..++|.+++..+.+..+--|.....+ .+++.-.+.++...|..+++-|
T Consensus 521 ~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 521 PA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred Ch--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44 3445555557788888888888888855544444444444 4455556667777888877766
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-13 Score=134.33 Aligned_cols=572 Identities=14% Similarity=0.079 Sum_probs=304.3
Q ss_pred HHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhc---CCCChhHHHHHHHHHhcCCChhh
Q 005943 11 RHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEM---ARKNIVSWTTMVTAYTSNKRPNW 87 (668)
Q Consensus 11 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~ 87 (668)
..+..+|++++|.+++.+.++.. +.....|..|...|-..|+.+++...+-.. ...|...|-.+.....+.|++..
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33444589999999999999876 556678888999999999988888866443 23466778888888888999999
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhh----cCChhHHHHhh
Q 005943 88 AIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVK----CGSLTRKLFDQ 163 (668)
Q Consensus 88 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~~~~~~ 163 (668)
|.-.|.+..+.. + ++...+--=...|-+.|+...|...+.++....++.|..-+-.++...++ .++. ++.+..
T Consensus 226 A~~cy~rAI~~~-p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~-e~a~~~ 302 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-P-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER-ERAAKA 302 (895)
T ss_pred HHHHHHHHHhcC-C-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH-HHHHHH
Confidence 999999988876 2 44444445566777889999999999988877654444444444433222 2221 111111
Q ss_pred hhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCC----CCcchHHHHh
Q 005943 164 YSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPE----RDVVSWTGII 239 (668)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l 239 (668)
+. ......+-..+...++.++..+.+...++.|......+.. ++..-|.+--
T Consensus 303 le------------------------~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 303 LE------------------------GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HH------------------------HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 11 1111233345556677777777777777777777666553 3332221000
Q ss_pred h-------hcccC-----chhh-HHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 005943 240 V-------GCFEC-----SCFT-LSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITL 306 (668)
Q Consensus 240 ~-------~~~~~-----~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 306 (668)
. .|..+ +..+ ...+.-...+.+...+++.-|... ....+.-+...|.-+..++...|++.+|+.+
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~--~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE--DNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH--hcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 0 01111 1111 111111111122222222222211 1111111233344444555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCC
Q 005943 307 LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKD 386 (668)
Q Consensus 307 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 386 (668)
|..+...-..-+...|-.+.+++-..+.. +.|.+.++...... +.+...--+|...+-+.|+.++|.+++..+..+|
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~--e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEY--EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhH--HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 55554443333344444444555555554 45555444444321 1122222334444444555555555555444332
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHh---------------
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKR--------------- 451 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------- 451 (668)
... ....+..|+..........+...|+.++-..+...|+..
T Consensus 514 ~~~-----------------------~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r 570 (895)
T KOG2076|consen 514 GRN-----------------------AEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKR 570 (895)
T ss_pred ccc-----------------------hhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 110 001112222222222333333333333322222211110
Q ss_pred -------CCCCchhHHHHHHHHHHhcCChHHHHHHhccCC--------C---CCH-hHHHHHHHHHHhcCChHHHHHHHH
Q 005943 452 -------GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP--------E---RDV-VSWTGIIVGCGQNGRAKEAIAYFQ 512 (668)
Q Consensus 452 -------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~---~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 512 (668)
+.+....+...++.+-.+.++......-...-. . .+- ..+.-++.++++.+++++|+.+..
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~ 650 (895)
T KOG2076|consen 571 RRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVF 650 (895)
T ss_pred HHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 011122222233333333333222222221111 0 111 234567778899999999999998
Q ss_pred HHHHCCC--CCCH-H-H-HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC---hhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 513 EMIQSRL--KPNE-I-T-FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH---LEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 513 ~m~~~g~--~p~~-~-~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
.+.+..+ .++. . . =...+.++...+++..|...++.|...++...+ ...|+...+...+.|+-.-=..++..
T Consensus 651 ~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 651 TALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887532 2222 1 2 244566778899999999999999876554433 44566566666666654444444444
Q ss_pred C-CCCCCHHHHHHHHHH--HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 585 M-PFKPDKTIWASMLKA--CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 585 ~-~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
+ ..+|+......++.+ ....+.+..|...+-++....|++|.+-..++.++.+.
T Consensus 731 ~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 731 LLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 4 334444333334443 56788999999999999999999998887777776543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-10 Score=112.72 Aligned_cols=445 Identities=9% Similarity=-0.011 Sum_probs=321.6
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHhhccC----CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHH
Q 005943 196 GFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMP----ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFD 271 (668)
Q Consensus 196 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (668)
.++-+...|.+-...--.+|+.+...++++.-. ..++.. +...|-.=...+-..|.+-.++.+..
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i-----------~rdqWl~eAe~~e~agsv~TcQAIi~ 503 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEI-----------NRDQWLKEAEACEDAGSVITCQAIIR 503 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceee-----------cHHHHHHHHHHHhhcCChhhHHHHHH
Confidence 345566677766666667777777777775433 222222 34444455555566666666666666
Q ss_pred HhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 005943 272 QYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSG 351 (668)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 351 (668)
.....+.....-..+|+.-...|.+.+.++-|..+|....+- ..-+...|......--..|.. +....++.....+-
T Consensus 504 avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~--Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 504 AVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTR--ESLEALLQKAVEQC 580 (913)
T ss_pred HHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcH--HHHHHHHHHHHHhC
Confidence 664433222333557777778888888888888888877663 223444555555555555665 66666766666543
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005943 352 YELDYIVGSNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSV 428 (668)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 428 (668)
+-....|-.....+-..|+...|..++....+. +...|-+-+.....+.+++.|..+|.+... ..|+...|.--
T Consensus 581 -pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs 657 (913)
T KOG0495|consen 581 -PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKS 657 (913)
T ss_pred -CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHH
Confidence 233444544556666779999998888877642 556788888888888899999999988765 45666666666
Q ss_pred HHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCH-hHHHHHHHHHHhcCChH
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDV-VSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~ 505 (668)
++.---.++.++|.+++++..+. ++.-...|..+.+.+-+.++.+.|.+.|..-.+ |+. ..|-.|...--+.|+.-
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~ 736 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV 736 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh
Confidence 66666678889999998877765 244456778888888899999999988887665 554 45666666667778899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+|..++++..-.+ +-|...|...|+.-.+.|+.+.|..+..+..+ .++-+...|..-|....+.++-.++...+++.
T Consensus 737 rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 737 RARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred hHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 9999999887763 44567888889999999999999998888885 55566778888888888888877888888777
Q ss_pred CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCceeEE
Q 005943 586 PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWI 664 (668)
Q Consensus 586 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 664 (668)
. -|.....++...+....++++|.+.|+++.+.+|++..+|..+...+.+.|.-++-.+++++.....+ .-|..|.
T Consensus 814 e--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP-~hG~~W~ 889 (913)
T KOG0495|consen 814 E--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP-THGELWQ 889 (913)
T ss_pred c--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC-CCCcHHH
Confidence 5 35556667777888999999999999999999999999999999999999999999999988776544 2244444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-12 Score=129.62 Aligned_cols=535 Identities=12% Similarity=0.100 Sum_probs=336.9
Q ss_pred HcCCChhHHHHhhhhcCC---CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHH
Q 005943 49 ADFTSLNDAHKLFDEMAR---KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGR 125 (668)
Q Consensus 49 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 125 (668)
...|+.++|.+++.+..+ .+...|.+|...|-..|+.+++...+-..--.. + -|...|-.+.......|+++.|.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p-~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-P-KDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-C-CChHHHHHHHHHHHhcccHHHHH
Confidence 344999999999988865 355679999999999999999887765544443 2 45678888888888899999999
Q ss_pred HHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHH
Q 005943 126 LIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLT 205 (668)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 205 (668)
-++.+.++..+ ++...+-
T Consensus 228 ~cy~rAI~~~p--------------------------------------------------------------~n~~~~~ 245 (895)
T KOG2076|consen 228 YCYSRAIQANP--------------------------------------------------------------SNWELIY 245 (895)
T ss_pred HHHHHHHhcCC--------------------------------------------------------------cchHHHH
Confidence 99998887643 2222333
Q ss_pred HHHHHHHhCCChHHHHHHhhccCCCCcc-hHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCe
Q 005943 206 SLIDMYLKCGEIDDGLALFNFMPERDVV-SWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNV 284 (668)
Q Consensus 206 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 284 (668)
.-+..|-+.|+...|.+-|.++...++. .|... .......+..+...++.+.|.+.++.... .....-+.
T Consensus 246 ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~--------~d~i~~~~~~~~~~~~~e~a~~~le~~~s-~~~~~~~~ 316 (895)
T KOG2076|consen 246 ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI--------EDLIRRVAHYFITHNERERAAKALEGALS-KEKDEASL 316 (895)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hccccccc
Confidence 3445677788888888888877754441 11111 12223345667777888888888887754 11233345
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH--------------------------HHHHHHHHhccccchH
Q 005943 285 ALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTF--------------------------TSALKACINLLNFNSR 338 (668)
Q Consensus 285 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--------------------------~~ll~~~~~~~~~~~~ 338 (668)
..++.++..+.+...++.+......+......+|..-+ --++-++...... +
T Consensus 317 ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~--e 394 (895)
T KOG2076|consen 317 EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKER--E 394 (895)
T ss_pred cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccccc--c
Confidence 56888899999999999999988888773333333222 1122334444444 5
Q ss_pred HHHHHHHHHHHhCCCC--ccchHHHHHHHHHhcCChHHHHHHHccCCCC----ChhhHHHHHHHHHhcCCcHHHHHHHHH
Q 005943 339 FALQVHGLIVTSGYEL--DYIVGSNLIDLYARLGNVKSALELFHRLPKK----DVVAWSGLIMGCTKHGLNSLAYLLFRD 412 (668)
Q Consensus 339 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 412 (668)
....+........+.| +...|.-+.++|...|++.+|.++|..+... +...|-.+.++|...|..+.|.+.|++
T Consensus 395 ~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 395 LLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred hHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555666666666433 5667778888888888888888888887753 566788888888888888888888888
Q ss_pred HHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 005943 413 MINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCV--------KRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP 484 (668)
Q Consensus 413 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 484 (668)
.+... +.+...-..+-..+.+.|+.++|.+.+..+. ..+..|.........+.+.+.|+.++=..+-..|.
T Consensus 475 vl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 475 VLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 87642 2222333445556677888888888887743 23345555555556667777777766443333332
Q ss_pred C---------C-----------------CHhHHHHHHHHHHhcCChHHHHHHHH------HHHHCCCCCCHH--HHHHHH
Q 005943 485 E---------R-----------------DVVSWTGIIVGCGQNGRAKEAIAYFQ------EMIQSRLKPNEI--TFLGVL 530 (668)
Q Consensus 485 ~---------~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~------~m~~~g~~p~~~--~~~~ll 530 (668)
. | .......++.+-.+.++......-.. --...|+.-+.+ .+.-++
T Consensus 554 ~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i 633 (895)
T KOG2076|consen 554 DDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELI 633 (895)
T ss_pred HHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHH
Confidence 1 0 11112223333333333222111111 111123333332 345566
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCCChh----HHHHHHHHhhhcCChHHHHHHHHhCC------CCCC-HHHHHHHHH
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEPHLE----HYYCMVDLLGQAGCFDDAEQLIAEMP------FKPD-KTIWASMLK 599 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~ 599 (668)
.++++.+.+++|..+...+....-+.-+.. .-...+.+....+++..|.+.++.+- ..|. ...|+...+
T Consensus 634 ~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s 713 (895)
T KOG2076|consen 634 LSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFS 713 (895)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 677888888888888877764423333322 33445566667788888888888771 1232 334555666
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPED-PSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
...+.++-.--.+.+.++....|++ +......+..+...+.+.-|..++-++-...+..|
T Consensus 714 ~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~P 774 (895)
T KOG2076|consen 714 YFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSP 774 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCc
Confidence 6667766666666666666666665 54555566667778888888888877776666333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-13 Score=133.41 Aligned_cols=536 Identities=12% Similarity=0.029 Sum_probs=299.8
Q ss_pred hhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCC----ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcC
Q 005943 24 SLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARK----NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYG 99 (668)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 99 (668)
.++..+...|+.|+..+|.+++..||..|+.+.|- +|.-|.-. +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56778888899999999999999999999999988 88888643 4456888888888888877664
Q ss_pred CCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhhhhhhhcCCCchh
Q 005943 100 SVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVAL 177 (668)
Q Consensus 100 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~ 177 (668)
. |...||+.|+.+|...||+..-..+-+.|..- ...+...|-.. +.++..+.-
T Consensus 80 -e-p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i------------~~sfs~~Gvgs~e~~fl~k~~c----------- 134 (1088)
T KOG4318|consen 80 -E-PLADTYTNLLKAYRIHGDLILFEVVEQDLESI------------NQSFSDHGVGSPERWFLMKIHC----------- 134 (1088)
T ss_pred -C-CchhHHHHHHHHHHhccchHHHHHHHHHHHHH------------HhhhhhhccCcHHHHHHhhccc-----------
Confidence 3 88889999999999999887633332223221 11122222211 111111000
Q ss_pred hhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcc-hHHHHhhhcccCchhhHHHHHHH
Q 005943 178 WNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVV-SWTGIIVGCFECSCFTLSALVDM 256 (668)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~ 256 (668)
..+.-||. ...+....-.|-++.+++++..+...... +. .. .++-
T Consensus 135 ----------------~p~~lpda---~n~illlv~eglwaqllkll~~~Pvsa~~~p~-------------~v--fLrq 180 (1088)
T KOG4318|consen 135 ----------------CPHSLPDA---ENAILLLVLEGLWAQLLKLLAKVPVSAWNAPF-------------QV--FLRQ 180 (1088)
T ss_pred ----------------CcccchhH---HHHHHHHHHHHHHHHHHHHHhhCCcccccchH-------------HH--HHHH
Confidence 11223443 34555566778888888888777621110 10 00 1111
Q ss_pred HHc-CCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccc
Q 005943 257 YSN-CNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNF 335 (668)
Q Consensus 257 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 335 (668)
... ...+++-....... . ..|+..+|.+++..-..+|+.+.|..++.+|.+.|+..+..-|-.++-+ .++.
T Consensus 181 nv~~ntpvekLl~~cksl----~-e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~ 252 (1088)
T KOG4318|consen 181 NVVDNTPVEKLLNMCKSL----V-EAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAA 252 (1088)
T ss_pred hccCCchHHHHHHHHHHh----h-cCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccc
Confidence 111 12223222222222 1 2578899999999999999999999999999999999998888777766 5666
Q ss_pred chHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCc-----HHHHHHH
Q 005943 336 NSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLN-----SLAYLLF 410 (668)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~ 410 (668)
.....+..-|...|+.|++.|+...+..+.+.|....+....+.-.--....+..+.++.....+. .-....+
T Consensus 253 --q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~ 330 (1088)
T KOG4318|consen 253 --QVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGST 330 (1088)
T ss_pred --hHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHh
Confidence 788889999999999999999988887777755532222111100000112222332221111111 1122222
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 005943 411 RDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGF---EKEDITLTSLIDMYLKCGEIDDGLALFKFMPERD 487 (668)
Q Consensus 411 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 487 (668)
++..-.|+......|...+.. ...|.-+.+.++-..+..-.. ..++..|..++. +.|.+...+.
T Consensus 331 k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr------------qyFrr~e~~~ 397 (1088)
T KOG4318|consen 331 KKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR------------QYFRRIERHI 397 (1088)
T ss_pred hHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH------------HHHHHHHhhH
Confidence 333333444333333332222 224555555555444432111 111222322222 2233222221
Q ss_pred HhHHHHHHHHHHh---cCChHHHHHHHHHH------------HH----CCCCC-------CHHHHHHHHHHhhcCCCHHH
Q 005943 488 VVSWTGIIVGCGQ---NGRAKEAIAYFQEM------------IQ----SRLKP-------NEITFLGVLSACRHAGLVEE 541 (668)
Q Consensus 488 ~~~~~~l~~~~~~---~~~~~~a~~~~~~m------------~~----~g~~p-------~~~~~~~ll~~~~~~g~~~~ 541 (668)
.....-.-.+... .....+..+..... .. +-..| -...-+.++..|+..-+..+
T Consensus 398 ~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1110001111111 11111111111111 00 00111 01123344445555555555
Q ss_pred HHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 542 AWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMP-----FKPDKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 542 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
++..-+..... -+ ...|..|++.+....+.+.|..+.++.. ..-|...+..+...+.+.+....+..+.++
T Consensus 478 ~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 478 ILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 55444443321 11 1678888888888888888888888773 224555677777778888888888888888
Q ss_pred HHh---cCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 617 LLA---TSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 617 ~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.+ ..|....++..+.......|+.+.-.+..+-+...|+
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 777 2344455666777777788888888888888888888
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-12 Score=128.03 Aligned_cols=280 Identities=10% Similarity=0.014 Sum_probs=165.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHccCCCCCh------hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC-C-cHHHHHHH
Q 005943 357 IVGSNLIDLYARLGNVKSALELFHRLPKKDV------VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQD-V-NQFIISSV 428 (668)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~l 428 (668)
..|..||..+......+.|..+.+++..++. .-+..+.+...+.+....+..++.++.+.-.. | ...++-.+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 5677888888888888888888888876643 34677778888888888888888888764322 2 24556667
Q ss_pred HHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHh--cCC
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQ--NGR 503 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~--~~~ 503 (668)
++.....|+.+...++++.+...|+..+ ..++....+.++...|.+.++.... +.+.....+.+.+.+ ..+
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~ 647 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDS 647 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhcccc
Confidence 7777778888888888888887776542 3344445566677667666554331 222222212111111 011
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccc--ccC---------CCC---------ChhHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKP--EYG---------LEP---------HLEHYY 563 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~---------~~p---------~~~~~~ 563 (668)
.+.+..+- .=+..|.+.|++..|.++.+.--- +.+ +.| +.....
T Consensus 648 ~qk~mDls----------------~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~d 711 (1088)
T KOG4318|consen 648 PQKTMDLS----------------IPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKND 711 (1088)
T ss_pred HHHHHhhc----------------chhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHH
Confidence 11111111 011113444444444333221100 000 000 011122
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcCC---CCchhHHHHHHHHHh
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHN---NTKLVSIIAEQLLATSP---EDPSKYVMLSNVYAT 637 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~ 637 (668)
-|+..|.+.|+++.|..++.++++.|+..+...+...+.+.. ++.++...-+++.+..| .+...|...+.+..+
T Consensus 712 RLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q 791 (1088)
T KOG4318|consen 712 RLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQ 791 (1088)
T ss_pred HHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhh
Confidence 367788888999999999999887888888777777776554 44445555555555443 344445555556666
Q ss_pred cCChhhHHHHHHHHHhcCC
Q 005943 638 LGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 638 ~g~~~~a~~~~~~~~~~~~ 656 (668)
....+.|.+.+.+..+...
T Consensus 792 ~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 792 TEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 6666688888888877754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-10 Score=110.75 Aligned_cols=392 Identities=10% Similarity=0.094 Sum_probs=302.2
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHH----HHhCCCCCCHHHHHHHHHHH
Q 005943 254 VDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSH----IHSSGMCIDSYTFTSALKAC 329 (668)
Q Consensus 254 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~ 329 (668)
--++.+..-++.|.++++...+. ++.+...|-+-..---.+|+.+...+++.+ +...|+..+...|..=..+|
T Consensus 413 wlAlarLetYenAkkvLNkaRe~---iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI---IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 33456667788888888887652 444666776666666678888888877665 45678888888888888888
Q ss_pred HhccccchHHHHHHHHHHHHhCCCC--ccchHHHHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCCcH
Q 005943 330 INLLNFNSRFALQVHGLIVTSGYEL--DYIVGSNLIDLYARLGNVKSALELFHRLPK---KDVVAWSGLIMGCTKHGLNS 404 (668)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 404 (668)
-..|.. -.+..+......-|+.- -..+|..-...|.+.+.++-|..+|....+ .+...|...+..--..|..+
T Consensus 490 e~agsv--~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSV--ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCCh--hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHH
Confidence 888888 77888888888777754 345777777888888999999888887765 25567777777767778888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 005943 405 LAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP 484 (668)
Q Consensus 405 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 484 (668)
....+|++.... ++-....|-......-..|++..|..++....+.. +.+...+-+-+..-....+++.|..+|.+..
T Consensus 568 sl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 888899888765 33445555555666677799999999999888775 4477788888888888999999999998776
Q ss_pred C--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhH
Q 005943 485 E--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEH 561 (668)
Q Consensus 485 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 561 (668)
. ++...|.--+......+..++|++++++.++. -|+-. .|..+...+-+.++.+.|.+.|..=.+ .++-....
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipL 721 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPL 721 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchH
Confidence 4 66677766666666778899999999888884 56654 677788888889999999988877663 33335677
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----------------
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE---------------- 623 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---------------- 623 (668)
|..|.+.=.+.|+.-+|..++++.. .+.+...|...+..-.+.|+.+.|..+..++++..|.
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 8888888888899999999999883 3347778888999999999999999888888776554
Q ss_pred --------------CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 624 --------------DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 624 --------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
|+..+..++..+....++++|++.|.+..+.+.
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 466677788888888999999999988877665
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-16 Score=146.14 Aligned_cols=254 Identities=14% Similarity=0.130 Sum_probs=113.6
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHH-HHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS-SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGE 472 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 472 (668)
...+.+.|++++|++++++......+|+...|. .+...+...++.+.|...++.+...+ +-++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 344455566666666664443333223333332 23334445566666666666666554 2255566777776 68899
Q ss_pred hHHHHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 473 IDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNEITFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 473 ~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
+++|..++...-+ ++...+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988877643 566677788888999999999999999987642 3456677888888999999999999999999
Q ss_pred ccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 550 KPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 550 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
.+ ..|+ ......++..+...|+.+++.++++... .+.|...+..+..++...|+.++|...++++.+..|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 84 3674 7888899999999999999888887762 2345667888999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+...++.++...|+.++|.++.+++-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-12 Score=119.47 Aligned_cols=433 Identities=12% Similarity=0.098 Sum_probs=284.0
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC
Q 005943 204 LTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGN 283 (668)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 283 (668)
...|...|..+....+|+..|+-+.+....+....++ -.+.+.+.+...+.+|+++++-....-.++..+
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk----------mnigni~~kkr~fskaikfyrmaldqvpsink~ 273 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK----------MNIGNIHFKKREFSKAIKFYRMALDQVPSINKD 273 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee----------eeecceeeehhhHHHHHHHHHHHHhhccccchh
Confidence 3445566667777888888888777554444222221 134556788888899999888765521111111
Q ss_pred --eeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccch---
Q 005943 284 --VALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIV--- 358 (668)
Q Consensus 284 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 358 (668)
+...+.+--.+.+.|+++.|+..|+...+. .|+-.+-..++-++...|+. +...+.|..|..-...||..-
T Consensus 274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~--ekmkeaf~kli~ip~~~dddkyi~ 349 (840)
T KOG2003|consen 274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDA--EKMKEAFQKLIDIPGEIDDDKYIK 349 (840)
T ss_pred hHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcH--HHHHHHHHHHhcCCCCCCcccccC
Confidence 123444445678899999999999888774 47877766666666667777 888888888876543333221
Q ss_pred -----HHHHHHHHHhcCC-----------hHHH----HHHHccCCCCChh-------------hHHH--------HHHHH
Q 005943 359 -----GSNLIDLYARLGN-----------VKSA----LELFHRLPKKDVV-------------AWSG--------LIMGC 397 (668)
Q Consensus 359 -----~~~l~~~~~~~~~-----------~~~a----~~~~~~~~~~~~~-------------~~~~--------l~~~~ 397 (668)
-..|+.--.+... .+.+ .++..-+..++-. .+.. -...+
T Consensus 350 ~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 1122222222111 1111 1222222223211 0111 12347
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCcHHHHHHH--HHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 005943 398 TKHGLNSLAYLLFRDMINSNQDVNQFIISSV--LKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDD 475 (668)
Q Consensus 398 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (668)
.+.|+++.|+++++-+.....+.-+..-+.+ +.-+....++..|.++-+...... .-++...+.-.+.....|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHH
Confidence 7899999999999988766544333322222 222223345666666666544322 1122222222233345789999
Q ss_pred HHHHhccCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 476 GLALFKFMPERDVVSWTGII---VGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 476 A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
|.+.|.+....|...-.+|. -.+-..|+.++|++.|-++... +.-+......+...|....+...|++++.+...
T Consensus 509 a~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s- 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS- 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-
Confidence 99999999887765433333 3466789999999999887664 344566777888889999999999999988762
Q ss_pred cCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 553 YGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 553 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
-++.|+.+..-|.+.|-+.|+...|.+..-+- . ++.+..+..-|...|....-+++++.+|+++.-+.|.....-..
T Consensus 587 -lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 587 -LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred -cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 34447899999999999999999999876554 4 44577787778888888888999999999999999997777777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc
Q 005943 631 LSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 631 l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
++..+.+.|+|.+|..+++.+..+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh
Confidence 888888999999999999988764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-11 Score=116.00 Aligned_cols=212 Identities=14% Similarity=0.110 Sum_probs=172.5
Q ss_pred ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 005943 435 LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYF 511 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 511 (668)
.|+.-.+.+-|+..+.....+ ...|--+..+|....+.++....|+...+ .|+.+|..-...+.-.+++++|..-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 477888888888888775332 23366677789999999999999998764 35667777777778888999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 005943 512 QEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP 589 (668)
Q Consensus 512 ~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 589 (668)
++.++ +.|+ ...|..+.-+..+.+.++++...|++..+ .++--+++|+.....+...+++++|.+.++.. ..+|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99988 4564 45788888888899999999999999986 55556899999999999999999999999977 3444
Q ss_pred C---------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 590 D---------KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 590 ~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+ +.+-.+++..- -.+++..|..+++++.+++|....+|..++.+..+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 22223333333 34899999999999999999999999999999999999999999999864
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=127.07 Aligned_cols=277 Identities=16% Similarity=0.068 Sum_probs=211.8
Q ss_pred ChHHHHHHHccCCCC--Ch-hhHHHHHHHHHhcCCcHHHHHHHHHHHHcC--CCCcHHHHHHHHHHhccccchHhHHHHH
Q 005943 371 NVKSALELFHRLPKK--DV-VAWSGLIMGCTKHGLNSLAYLLFRDMINSN--QDVNQFIISSVLKVCSCLASLRRGKQVH 445 (668)
Q Consensus 371 ~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 445 (668)
+..+|...|..+++. |. .....+..+|...+++++|.++|+.+.+.. .--+...|.+.+-.+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 456777777775442 22 344556677778888888888888776643 122344566655543221 111122
Q ss_pred -HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005943 446 -AFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP 521 (668)
Q Consensus 446 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 521 (668)
+.+.+. -+-.+.+|.++.++|.-+++.+.|++.|++..+ | ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 222222 256788999999999999999999999999886 3 456888888888999999999999998775 445
Q ss_pred CH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005943 522 NE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASM 597 (668)
Q Consensus 522 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 597 (668)
.. ..|..+...|.+.++++.|+-.|++.. .+.| +......+...+.+.|+.++|+.+++++ ...| |+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 43 367777888999999999999999998 6677 4667778889999999999999999998 3333 55555556
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
+..+...+++++|.+.++++++..|++..++..++++|.+.|+.+.|..-+..+.+..++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 666778899999999999999999999999999999999999999999999888876653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-12 Score=124.27 Aligned_cols=275 Identities=10% Similarity=0.098 Sum_probs=195.5
Q ss_pred cCChHHHHHHHccCCCC--Chhh-HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHH--HHHHHhccccchHhHHH
Q 005943 369 LGNVKSALELFHRLPKK--DVVA-WSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS--SVLKVCSCLASLRRGKQ 443 (668)
Q Consensus 369 ~~~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~ 443 (668)
.|+++.|++.+....+. ++.. |-....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888887765543 2222 333344457788888888888888754 34433222 33556777888888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---CH--------hHHHHHHHHHHhcCChHHHHHHHH
Q 005943 444 VHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER---DV--------VSWTGIIVGCGQNGRAKEAIAYFQ 512 (668)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~a~~~~~ 512 (668)
.++.+.+.. +-++..+..+...|.+.|++++|.+++..+.+. +. ..|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 556777888888888999999999888877642 11 133334444444555666777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-C
Q 005943 513 EMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-D 590 (668)
Q Consensus 513 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 590 (668)
.+.+. .+.+......+..++...|+.++|.+++++..+ ..|+..... +.+....++.+++++.++++ +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 345667788888889999999999999988874 355553332 22333458889999988877 3445 4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
...+.++...|.+.+++++|.+.|+++.+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5567778888999999999999999999998885 4577899999999999999999887644
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-09 Score=98.82 Aligned_cols=464 Identities=13% Similarity=0.077 Sum_probs=288.8
Q ss_pred ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHH
Q 005943 68 NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLL 147 (668)
Q Consensus 68 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 147 (668)
++..|-...+-=..++++..|..+|++.+.-. . -+...|.--+..=.+...+.-|..+++.....-+..|..=|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy---- 145 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-Y-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY---- 145 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-c-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH----
Confidence 44455555555567888999999999998765 2 46666776777777888899999999988764332222111
Q ss_pred hhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhcc
Q 005943 148 DMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFM 227 (668)
Q Consensus 148 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 227 (668)
..+..=-..|++..|.++|+.-
T Consensus 146 ----------------------------------------------------------KY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 146 ----------------------------------------------------------KYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred ----------------------------------------------------------HHHHHHHHhcccHHHHHHHHHH
Confidence 1111222345555555555543
Q ss_pred CCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHH
Q 005943 228 PERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLL 307 (668)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 307 (668)
.+-.+ +..+|.+.|++-.+...++.|..++++..- ..|++.+|--...--.++|++..+..+|
T Consensus 168 ~~w~P-------------~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 168 MEWEP-------------DEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HcCCC-------------cHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 32111 334444555555555555555555555533 4455555554444445555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH----hccccchHHHHHHHHHHHHhCCCC-ccchHHHHHHHHHhcCChHHHHHHHc--
Q 005943 308 SHIHSSGMCIDSYTFTSALKACI----NLLNFNSRFALQVHGLIVTSGYEL-DYIVGSNLIDLYARLGNVKSALELFH-- 380 (668)
Q Consensus 308 ~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~-- 380 (668)
+...+. --|...-..++.+++ ....+ +.+..+++...++-.+- ....|..+...=-+-|+....++..-
T Consensus 231 erAie~--~~~d~~~e~lfvaFA~fEe~qkE~--ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 231 ERAIEF--LGDDEEAEILFVAFAEFEERQKEY--ERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 554432 011111112222222 22233 55555555554432111 12334444433334455444443321
Q ss_pred ------cCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcH-H------HHHHHHHHh---ccccchHhH
Q 005943 381 ------RLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQ-F------IISSVLKVC---SCLASLRRG 441 (668)
Q Consensus 381 ------~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~------~~~~ll~~~---~~~~~~~~a 441 (668)
...+. |-.+|-..++.-...|+.+...++|+..+.. ++|-. . .|.-+=-+| ....+++.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 11222 4456767777777789999999999988754 44422 1 222211122 346789999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHH----HhcCChHHHHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005943 442 KQVHAFCVKRGFEKEDITLTSLIDMY----LKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 515 (668)
.++++...+. +|....|+.-+--+| .++.+...|.+++..... |...+|...|..-.+.++++.+..++++.+
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999988883 466666666554444 467899999999988775 788888888888899999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHH
Q 005943 516 QSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIW 594 (668)
Q Consensus 516 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 594 (668)
+-+ +-|..+|......-...|+.+.|..+|+-...+..++.....|.+.|+.=...|.+++|..+++.+ ...+...+|
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 964 445667888877778899999999999999876444444667888888888999999999999988 344556667
Q ss_pred HHHHHHHH-----hhC-----------CHHHHHHHHHHHHh
Q 005943 595 ASMLKACE-----THN-----------NTKLVSIIAEQLLA 619 (668)
Q Consensus 595 ~~l~~~~~-----~~~-----------~~~~a~~~~~~~~~ 619 (668)
-+...--. +.+ ....|..+|+++..
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 66655432 333 66788999999877
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.7e-10 Score=102.95 Aligned_cols=426 Identities=9% Similarity=0.034 Sum_probs=309.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhc
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAAS 279 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 279 (668)
+...|-.-+..=.++.++..|..+++.....=+. -...|.-.+.+--..|++..|.++|++-..
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR------------VdqlWyKY~ymEE~LgNi~gaRqiferW~~---- 169 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR------------VDQLWYKYIYMEEMLGNIAGARQIFERWME---- 169 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHc----
Confidence 4445555666667788888888888877632222 134556666667778999999999999866
Q ss_pred CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHh-CC-CCccc
Q 005943 280 AYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTS-GY-ELDYI 357 (668)
Q Consensus 280 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~ 357 (668)
..|+...|++.|+.-.+.+.++.|..+|+..+- +.|+..+|.-..+.=-+.|.. ..+..++....+. |- ..+..
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~--~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNV--ALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHhhhHHHHHH
Confidence 889999999999999999999999999999876 559999999888888888988 8899998877653 21 12334
Q ss_pred hHHHHHHHHHhcCChHHHHHHHccCCC----C-ChhhHHHHHHHHHhcCCcHHHHHH--------HHHHHHcCCCCcHHH
Q 005943 358 VGSNLIDLYARLGNVKSALELFHRLPK----K-DVVAWSGLIMGCTKHGLNSLAYLL--------FRDMINSNQDVNQFI 424 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~~~~~~~~~ 424 (668)
.+.++...=.++..++.|.-+|+-..+ . ....|..+...--+.|+.....+. |++++.. .+.|-.+
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDs 324 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDS 324 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchH
Confidence 455555555567778888888765443 2 234455555555556766554443 3334433 3556677
Q ss_pred HHHHHHHhccccchHhHHHHHHHHHHhCCCCch-h------HHHHHHHHH---HhcCChHHHHHHhccCCC--C-CHhHH
Q 005943 425 ISSVLKVCSCLASLRRGKQVHAFCVKRGFEKED-I------TLTSLIDMY---LKCGEIDDGLALFKFMPE--R-DVVSW 491 (668)
Q Consensus 425 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~------~~~~l~~~~---~~~~~~~~A~~~~~~~~~--~-~~~~~ 491 (668)
|--.++.-...|+.+...++++..+..- +|-. . .|--+=-++ ....+.+.+.++|+...+ | ...||
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtF 403 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTF 403 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchH
Confidence 7778888888899999999999888663 4421 1 121111111 246788899999987765 3 23344
Q ss_pred H----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHH
Q 005943 492 T----GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMV 566 (668)
Q Consensus 492 ~----~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 566 (668)
. ....--.++.+...|.+++...+ |.-|...+|...|..-.+.++++.+..++++.. ...| +..+|.-..
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWSKYA 478 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHHHHH
Confidence 3 33444457788999999988765 578999999999999999999999999999998 5566 688899999
Q ss_pred HHhhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-----h
Q 005943 567 DLLGQAGCFDDAEQLIAEMPFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA-----T 637 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~ 637 (668)
..=...|+.+.|..+|.-+-..|. ...|.+.|.--...|.++.|..+|+++++..+... +|...+..-. +
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccc
Confidence 999999999999999998754553 34566677767788999999999999999887755 7777776554 3
Q ss_pred cC-----------ChhhHHHHHHHHHh
Q 005943 638 LG-----------MWDSLSKVRKAGKK 653 (668)
Q Consensus 638 ~g-----------~~~~a~~~~~~~~~ 653 (668)
.| ....|++++++...
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHH
Confidence 34 55677777776643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-10 Score=108.52 Aligned_cols=346 Identities=13% Similarity=0.111 Sum_probs=162.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH--
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS-- 324 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-- 324 (668)
...+......+.+.|....|+..|..... .-+..|.+.+.-..-.-+.+.+. ... .|...|...+..
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~------~~P~~W~AWleL~~lit~~e~~~----~l~-~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVN------RYPWFWSAWLELSELITDIEILS----ILV-VGLPSDMHWMKKFF 232 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHh------cCCcchHHHHHHHHhhchHHHHH----HHH-hcCcccchHHHHHH
Confidence 33444444556677888888888887732 22334444433222222222211 111 122222222211
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC------ChhhHHHHHHHHH
Q 005943 325 ALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK------DVVAWSGLIMGCT 398 (668)
Q Consensus 325 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~ 398 (668)
+..++...... +.+..-.......|++.+...-+-...+.-...++++|+.+|+++.+. |..+|+.++- .
T Consensus 233 ~~~a~~el~q~--~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 233 LKKAYQELHQH--EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence 22333344444 555555666666666666665555555555666777777777777654 3334444332 2
Q ss_pred hcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 005943 399 KHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLA 478 (668)
Q Consensus 399 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 478 (668)
+..+.. +..+..-...- -+-.+.|..++.+.|.-.++.++|..
T Consensus 309 ~~~~sk--Ls~LA~~v~~i-----------------------------------dKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 309 KNDKSK--LSYLAQNVSNI-----------------------------------DKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhhhHH--HHHHHHHHHHh-----------------------------------ccCCccceeeehhHHHHHHhHHHHHH
Confidence 221111 11111110000 12223344444455555555555555
Q ss_pred HhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCC
Q 005943 479 LFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGL 555 (668)
Q Consensus 479 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 555 (668)
.|++..+ | -...|+.+..-|...++...|++-++..++-. +-|...|-.+..+|.-.+...=|+-+|++.. .+
T Consensus 352 YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~ 427 (559)
T KOG1155|consen 352 YFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---EL 427 (559)
T ss_pred HHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hc
Confidence 5555443 2 22345555555555555555555555555521 2233355555555555555555555555554 33
Q ss_pred CC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-------cCCCCc
Q 005943 556 EP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLA-------TSPEDP 625 (668)
Q Consensus 556 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~ 625 (668)
+| |...|.+|.++|.+.++.++|.+-|...- ...+...+..+...+.+-++.++|...|++-++ ..|...
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ 507 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETI 507 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 44 35555555555555555555555555441 112334455555555555555555555555444 122223
Q ss_pred hhHHHHHHHHHhcCChhhHHHHH
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
.+...|+..+.+.+++++|-.+.
T Consensus 508 ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 508 KARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHHHHHHHHhhcchHHHHHHH
Confidence 33334444455555555554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-11 Score=121.10 Aligned_cols=278 Identities=14% Similarity=0.111 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC------ChhhHHHHHHHHHhcCCcHHHHHHHH
Q 005943 338 RFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK------DVVAWSGLIMGCTKHGLNSLAYLLFR 411 (668)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~ 411 (668)
+.|...|..+..+ +.-+..+..-+..+|...+++++|+++|+.+.+. +...|.+.+-.+.+. -++..+.
T Consensus 336 ~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 5666666663332 2333355566777777778888888888777642 555666666554332 2222222
Q ss_pred HHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHH
Q 005943 412 DMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSW 491 (668)
Q Consensus 412 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 491 (668)
+-.-.--+-.+.+|.++-+.|.-.++.+.|...|++..+.. +-...+|+.+.+-+.....+|.|...|+.....|+..|
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 22222235567788888888888888888888888776654 33678899999999999999999999999988776665
Q ss_pred HH---HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHH
Q 005943 492 TG---IIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMV 566 (668)
Q Consensus 492 ~~---l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 566 (668)
|+ +...|.+.++++.|+-.|++..+ +.|. .+....+...+.+.|+.++|+.++++.. .++| |+..--..+
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRA 564 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHH
Confidence 54 67789999999999999999998 5564 4566777778889999999999999988 5566 566666677
Q ss_pred HHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 567 DLLGQAGCFDDAEQLIAEMP-FKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
..+...+++++|+..+++++ ..|+ ...+..+...|.+.|+.+.|+.-|--+.+++|.-..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 88889999999999999993 4564 556777788899999999999999999999987543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-11 Score=118.07 Aligned_cols=223 Identities=10% Similarity=0.023 Sum_probs=151.0
Q ss_pred HHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHh
Q 005943 364 DLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRR 440 (668)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 440 (668)
..+...|+++.|...++++.+. +......+...|.+.|++++|.+++..+.+.+..++. ....+
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l------------ 227 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML------------ 227 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH------------
Confidence 3445555566665555554432 3444555555566666666666666655554422111 00000
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005943 441 GKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS 517 (668)
Q Consensus 441 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 517 (668)
....|..++.......+.+...++++.+.+ .++.....+...+...|+.++|..++++..+.
T Consensus 228 ---------------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 228 ---------------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred ---------------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 001233333333444556667777777654 46778888899999999999999999988873
Q ss_pred CCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHH
Q 005943 518 RLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWA 595 (668)
Q Consensus 518 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 595 (668)
+|+.... ++.+....++.+++.+..+...++ .| |...+.++...+.+.|++++|.+.|+.+ ...|+...+.
T Consensus 293 --~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 293 --QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred --CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 5555322 233444668999999999998853 45 5677889999999999999999999988 6679999989
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 596 SMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 596 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
.+...+.+.|+.++|.+++++...+.
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999987743
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-10 Score=106.40 Aligned_cols=252 Identities=11% Similarity=0.034 Sum_probs=141.5
Q ss_pred HHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 005943 396 GCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDD 475 (668)
Q Consensus 396 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (668)
-+...+++.+..++++++.+.. ++....+..=|..+...|+..+-..+-..+++. .|..+.+|-++.-.|...|+..+
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 3334444444444444444321 222222222222333444444333333333333 24455666666666666677777
Q ss_pred HHHHhccCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 476 GLALFKFMPERD---VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 476 A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
|++.|.+...-| ...|-....+|+-.|..++|+..+...-+. ++-....+..+..-|.+.++.+.|.++|.+..
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~-- 407 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL-- 407 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH--
Confidence 777776554322 335666666666667777777666665553 11122233444445666677777777776666
Q ss_pred cCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 553 YGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP--------FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 553 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
++-| |+..++-+.-+....+.+.+|..+|+... .++ -..+++.+.-+|.+.+.+++|+..+++++.+.|
T Consensus 408 -ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 408 -AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred -hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 4445 45566666666666666677766666541 111 233456666667777777777777777777777
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 623 EDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 623 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.++.++..++.+|...|+++.|+..+.+..-
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 7777777777777777777777777766543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-09 Score=101.36 Aligned_cols=252 Identities=11% Similarity=0.092 Sum_probs=201.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcC
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGF--EKEDITLTSLIDMYLKCG 471 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 471 (668)
..++......+++.+-.......|++-+...-+....+.....++++|+.+|+++.+... --|..+|+-++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 345666667788888888888888877777777777777788899999999999988731 12456666554 33333
Q ss_pred ChHH---HHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHH
Q 005943 472 EIDD---GLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFT 547 (668)
Q Consensus 472 ~~~~---A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 547 (668)
+.+- |..++. +.+=.+.|..++.+-|.-.++.++|...|++.++ +.|... .|..+.+-|....+...|.+-++
T Consensus 312 ~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2221 222221 2223455667778888888999999999999998 466654 68888889999999999999999
Q ss_pred hcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 548 SMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 548 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+.. .+.| |-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|+++....--+
T Consensus 389 rAv---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 389 RAV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 998 5566 7889999999999999999999999998 4555 78899999999999999999999999999977777
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
..++..|+++|-+.++.++|.+.+++-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88999999999999999999999988765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-10 Score=116.06 Aligned_cols=281 Identities=11% Similarity=0.033 Sum_probs=169.5
Q ss_pred hcCChHHHHHHHccCCCC--C-hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHH
Q 005943 368 RLGNVKSALELFHRLPKK--D-VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQV 444 (668)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 444 (668)
..|+++.|++.+.+..+. + ...+-....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 457777777777665542 2 2223333455666777777777777766543222222333345566667777777777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHH----HHHHHHhcCChHHHHHHHHHHHHC
Q 005943 445 HAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTG----IIVGCGQNGRAKEAIAYFQEMIQS 517 (668)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~----l~~~~~~~~~~~~a~~~~~~m~~~ 517 (668)
++.+.+.. |-++..+..+...+...|++++|.+.+..+.+ .+...+.. ........+..+.+.+.+..+.+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77777665 44556677777777777787777777776663 22222211 111112222222233344444432
Q ss_pred C---CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHH-HHHHHH--hhhcCChHHHHHHHHhC-CCCCC
Q 005943 518 R---LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHY-YCMVDL--LGQAGCFDDAEQLIAEM-PFKPD 590 (668)
Q Consensus 518 g---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~--~~~~g~~~~A~~~~~~~-~~~p~ 590 (668)
. .+.+...+..+...+...|+.++|.+++++..+. .||.... ..++.. ....++.+++.+.+++. ...|+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 1 1125667777777888888888888888888743 4443310 012222 22346677777777766 33443
Q ss_pred H---HHHHHHHHHHHhhCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 591 K---TIWASMLKACETHNNTKLVSIIAE--QLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 591 ~---~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
. ....++...+.+.|++++|.+.|+ ...+..|++. .+..++.++.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 455677788888888888888888 4555666654 466888888888888888888887644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-09 Score=99.02 Aligned_cols=219 Identities=10% Similarity=0.018 Sum_probs=172.8
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 005943 398 TKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGL 477 (668)
Q Consensus 398 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 477 (668)
.-.|+.-.|...|+..+.....++.. |.-+..+|....+.++....|....+.. +.++.+|..-.+.+.-.++++.|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 44688888999999988876555443 6666778888999999999999888876 567778888888888889999999
Q ss_pred HHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccC
Q 005943 478 ALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYG 554 (668)
Q Consensus 478 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 554 (668)
.=|++... | ++..|-.+..+.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+... .
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~ 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---E 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---h
Confidence 99998875 3 5567777777778889999999999999986 45556789999999999999999999999887 3
Q ss_pred CCCC---------hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 555 LEPH---------LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 555 ~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
+.|+ +.+-..++-.-.+ +++..|.+++.+. ...| ....|..|.....+.|+.++|+++|++...+-..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4444 1222233322233 8899999999988 4555 4557888999999999999999999998875543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-13 Score=127.32 Aligned_cols=230 Identities=14% Similarity=0.178 Sum_probs=106.9
Q ss_pred HHHHHhccccchHhHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---CHhHHHHHHHHHHhcC
Q 005943 427 SVLKVCSCLASLRRGKQVHAFCVKRG-FEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER---DVVSWTGIIVGCGQNG 502 (668)
Q Consensus 427 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 502 (668)
.+...+.+.|++++|.++++...... .+.+...+..+.......++++.|...++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44667788999999999996654443 3445666667777888899999999999999863 34456667666 7889
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 005943 503 RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLI 582 (668)
Q Consensus 503 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 582 (668)
++++|..++++..+. .++...+..++..+...++++++..+++.+......+++...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887664 356667778888899999999999999998754344567888999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 583 AEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 583 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
++. ...| |......++..+...|+.+++.++++...+..|.++..+..++.+|...|+.++|..++++..+..+.+|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 988 4456 5777888999999999999999999999998899999999999999999999999999999988777554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.3e-10 Score=110.54 Aligned_cols=251 Identities=9% Similarity=-0.024 Sum_probs=169.5
Q ss_pred HHHHHhcCChHHHHHHHccCCC--CCh--hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 363 IDLYARLGNVKSALELFHRLPK--KDV--VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
..++.+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...++.+.+.. +-++.....+...+...|++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence 3445555666666666666432 221 222233556666777777777777776664 23445566666777777777
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHH-------HhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHH
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMY-------LKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAI 508 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 508 (668)
+.+.+++..+.+.+..++......-..++ ......+...+.+....+ .+...+..+...+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 77777777777765433322211111111 122233455556665553 37788888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHH--H-HHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-h--hHHHHHHHHhhhcCChHHHHHHH
Q 005943 509 AYFQEMIQSRLKPNEIT--F-LGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-L--EHYYCMVDLLGQAGCFDDAEQLI 582 (668)
Q Consensus 509 ~~~~~m~~~g~~p~~~~--~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~ 582 (668)
+++++..+. .|+... + ....-.....++.+.+.+.++...+. .|+ . ....++...+.+.|++++|.+.|
T Consensus 284 ~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 284 EIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 999999985 455442 1 12222234457888899999888754 453 4 56779999999999999999999
Q ss_pred Hh--C-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 583 AE--M-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 583 ~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 359 e~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 359 KNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 94 3 5679999999999999999999999999999866
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-08 Score=97.44 Aligned_cols=542 Identities=13% Similarity=0.142 Sum_probs=283.1
Q ss_pred cchHHHHHHHHcCCChhHHHHhhhhcCC-----CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHH
Q 005943 39 FTGNNLLSMYADFTSLNDAHKLFDEMAR-----KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLK 113 (668)
Q Consensus 39 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 113 (668)
..|-.-+..+.++|++-.-...|+...+ .....|...+...-..+-++.++++|++..+.. |. .-.--+.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---P~--~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---PE--AREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC---HH--HHHHHHH
Confidence 3455555666667777777777766533 123357777777777788888888888887754 33 3666777
Q ss_pred HHhccCChHHHHHHHHHHHHcCC------CCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchh
Q 005943 114 ACSLSGDLDLGRLIHERITREKL------EYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQ 187 (668)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (668)
.+++.+++++|.+.+........ +.+...|..+.+..++..+.. . ..+
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~--------------~------------sln 231 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV--------------Q------------SLN 231 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh--------------c------------ccC
Confidence 77888888888888877764321 112222222222222211110 0 000
Q ss_pred hHHHHHHhCCC--CCh--hhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCH
Q 005943 188 VHAFCVKRGFE--KED--VTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVL 263 (668)
Q Consensus 188 ~~~~~~~~g~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~ 263 (668)
+ +.....|+. +|. ..|..|.+.|.+.|.++.|..+|++....-. ...-|+.+.+.|+.-..-
T Consensus 232 v-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~-------------tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 232 V-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM-------------TVRDFTQIFDAYAQFEES 297 (835)
T ss_pred H-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe-------------ehhhHHHHHHHHHHHHHH
Confidence 0 011112221 222 3466666666777777777666665443211 222333344444332211
Q ss_pred HHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCC-C----------CCHHHHHHHHHHHHhc
Q 005943 264 CEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGM-C----------IDSYTFTSALKACINL 332 (668)
Q Consensus 264 ~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~----------p~~~t~~~ll~~~~~~ 332 (668)
.-+.++= +.. +.+..+. ..-+++-.+.-|+.+.+.+. - -+..++..-... ..
T Consensus 298 ~~~~~me--~a~-~~~~n~e------------d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e 360 (835)
T KOG2047|consen 298 CVAAKME--LAD-EESGNEE------------DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YE 360 (835)
T ss_pred HHHHHHh--hhh-hcccChh------------hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hc
Confidence 1111110 000 0000000 01123333444555444321 0 111122111111 12
Q ss_pred cccchHHHHHHHHHHHHhCCCCc------cchHHHHHHHHHhcCChHHHHHHHccCCCCChh-------hHHHHHHHHHh
Q 005943 333 LNFNSRFALQVHGLIVTSGYELD------YIVGSNLIDLYARLGNVKSALELFHRLPKKDVV-------AWSGLIMGCTK 399 (668)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~ 399 (668)
|+. ......+.+..+. +.|. -..|..+.+.|-..|+++.|..+|++..+-+-. +|..-...-.+
T Consensus 361 ~~~--~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 361 GNA--AEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred CCh--HHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 222 3344445444442 2221 235667788888899999999999988764333 34444455556
Q ss_pred cCCcHHHHHHHHHHHHcCCCCc-----------------HHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHH
Q 005943 400 HGLNSLAYLLFRDMINSNQDVN-----------------QFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTS 462 (668)
Q Consensus 400 ~~~~~~a~~~~~~m~~~~~~~~-----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 462 (668)
..+++.|+.+.+......-.|. ...|...+..-...|-++....+++.+.+..+.....+.|
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N- 516 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN- 516 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-
Confidence 6777788877766543221111 1133444444445567777777777777776543332222
Q ss_pred HHHHHHhcCChHHHHHHhccCCC----CCHh-HHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HH
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE----RDVV-SWTGIIVGCGQ---NGRAKEAIAYFQEMIQSRLKPNEITFLGVL--SA 532 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~ 532 (668)
..-.+-...-++++.++|++-.. |++. .|+..+.-+.+ ....+.|..+|++.++ |.+|...-+..|+ ..
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 12223344557888888887653 5543 56665554443 2367888888888888 5666544322222 22
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH---HHHhhCC
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLK---ACETHNN 606 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~---~~~~~~~ 606 (668)
-.+.|....|..++++... ++++. ...|+..|.-....=-...-.+++++. ..-||...-...+. .-.+.|.
T Consensus 596 EEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh
Confidence 2356778888888888764 55553 456666664332221122233444443 22355544433333 2456788
Q ss_pred HHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCChhhHHHHHH
Q 005943 607 TKLVSIIAEQLLATSPE--DPSKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 607 ~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
.+.|..+|...-+..++ +...|...=..-.+.|+-+-..+.++
T Consensus 674 idRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 674 IDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 88888888888885544 45567777777888888555544443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=108.81 Aligned_cols=198 Identities=15% Similarity=0.070 Sum_probs=165.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA 532 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 532 (668)
....+..+...+...|++++|.+.+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677788889999999999999987654 3 46678888899999999999999999998863 3455677788888
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHH
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 610 (668)
+...|++++|.+.+++.............+..+..++...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999854222234567778899999999999999999887 3333 466788888889999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 611 SIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
...++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888999999999999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-09 Score=98.47 Aligned_cols=286 Identities=11% Similarity=0.017 Sum_probs=182.9
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHH
Q 005943 297 NEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSAL 376 (668)
Q Consensus 297 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (668)
.|++.+|+++..+-.+.+-.|- ..|....++.-..|+. +.+-..+.+..+..-.++..+.-+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~--~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDE--DRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccH--HHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 5677777777776555543331 2233334444444444 444444444443322333333444444455555555555
Q ss_pred HHHccCC---CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCC
Q 005943 377 ELFHRLP---KKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGF 453 (668)
Q Consensus 377 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 453 (668)
.-+.++. ..+........++|.+.|++.....++.+|.+.|.-.++..-
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~---------------------------- 225 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA---------------------------- 225 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------
Confidence 4444332 234445555555666666666666666666555533222110
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005943 454 EKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVL 530 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 530 (668)
.....+++.+++-....+..+.-...|+..+. .++..-.+++.-+.+.|+.++|.++.++..+++..|+.. ..
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~ 301 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RL 301 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HH
Confidence 01123455556555555555555666776663 456667778888899999999999999999887777722 22
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHH
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKL 609 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 609 (668)
-.+.+-++...-++..+.-.+.++..| ..+.+|...|.+.+.|.+|.+.|+.. ...|+..+|+.+..++.+.|++.+
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 346677888887777777776544444 78889999999999999999999876 678999999999999999999999
Q ss_pred HHHHHHHHHh
Q 005943 610 VSIIAEQLLA 619 (668)
Q Consensus 610 a~~~~~~~~~ 619 (668)
|.+..++.+.
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 9999998876
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.9e-10 Score=98.26 Aligned_cols=217 Identities=12% Similarity=0.090 Sum_probs=120.9
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCC-c--cchHHHHHHHHHhcCCh
Q 005943 296 LNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYEL-D--YIVGSNLIDLYARLGNV 372 (668)
Q Consensus 296 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~ 372 (668)
-.++.++|.+.|-+|.+.. +-+..+-.++-+.+.+.|.. +.|..++..+.++.--+ + ....-.|..-|...|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEv--DRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEV--DRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchH--HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3566778888888887621 11122223455566667777 77777777766543211 1 12333466778888999
Q ss_pred HHHHHHHccCCCCC---hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHH----HHHHHHHHhccccchHhHHHHH
Q 005943 373 KSALELFHRLPKKD---VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQF----IISSVLKVCSCLASLRRGKQVH 445 (668)
Q Consensus 373 ~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~ 445 (668)
|.|+.+|..+.+.+ ......|+..|....+|++|+++-+++...+..+... .|.-+...+....+++.|...+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999998887743 3456778888888899999998888887766554443 2333333333444555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHh----HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005943 446 AFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVV----SWTGIIVGCGQNGRAKEAIAYFQEMIQ 516 (668)
Q Consensus 446 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~ 516 (668)
.+..+.. +..+..--.+.+.+...|+++.|.+.++.+.+.|+. ....|..+|.+.|+.++...++.++.+
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5444433 222222233344444444444444444444432221 233344444444444444444444444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-07 Score=95.25 Aligned_cols=470 Identities=11% Similarity=0.117 Sum_probs=261.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhh---------------------
Q 005943 112 LKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAAS--------------------- 170 (668)
Q Consensus 112 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~--------------------- 170 (668)
..-+-+.+++.--...++.....|. .|..++|+|-..|..+.+-.+.++.+-+-.+..
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerG 923 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERG 923 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeeccc
Confidence 3333445555556666777777775 478888888888877766655444332221110
Q ss_pred ------------------------cCCCchhhhhhhhc----chhhHHHHHHhCCC--CChhhHHHHHHHHHhCCChHHH
Q 005943 171 ------------------------AYGNVALWNSMLSG----GKQVHAFCVKRGFE--KEDVTLTSLIDMYLKCGEIDDG 220 (668)
Q Consensus 171 ------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A 220 (668)
...|...|+.++.. .+++++.+++.++. .|+...+.-+.++...+-..+-
T Consensus 924 qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eL 1003 (1666)
T KOG0985|consen 924 QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNEL 1003 (1666)
T ss_pred CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHH
Confidence 01355666666644 45666777766664 3455566667777777777777
Q ss_pred HHHhhccC-CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCC
Q 005943 221 LALFNFMP-ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQ 299 (668)
Q Consensus 221 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 299 (668)
+++++++. ++.+.+- +...-+.|+-...+. +.....+..+++... ..| .+...+..++-
T Consensus 1004 IELLEKIvL~~S~Fse----------~~nLQnLLiLtAika-d~trVm~YI~rLdny---Da~------~ia~iai~~~L 1063 (1666)
T KOG0985|consen 1004 IELLEKIVLDNSVFSE----------NRNLQNLLILTAIKA-DRTRVMEYINRLDNY---DAP------DIAEIAIENQL 1063 (1666)
T ss_pred HHHHHHHhcCCccccc----------chhhhhhHHHHHhhc-ChHHHHHHHHHhccC---Cch------hHHHHHhhhhH
Confidence 77777766 3333221 111112222222222 223333444444221 111 23334455556
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHH
Q 005943 300 NEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELF 379 (668)
Q Consensus 300 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 379 (668)
+++|..+|+..- .+......++.-... + +.|.+.-+. --.+.+|..+..+-.+.|...+|.+-|
T Consensus 1064 yEEAF~ifkkf~-----~n~~A~~VLie~i~~---l--dRA~efAe~------~n~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD-----MNVSAIQVLIENIGS---L--DRAYEFAER------CNEPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HHHHHHHHHHhc-----ccHHHHHHHHHHhhh---H--HHHHHHHHh------hCChHHHHHHHHHHHhcCchHHHHHHH
Confidence 677777766532 233333333322211 1 222222211 123455666666666666666666655
Q ss_pred ccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhH
Q 005943 380 HRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDIT 459 (668)
Q Consensus 380 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 459 (668)
-+. .|+..|...+....+.|.+++-...+...++..-.|... +.++-+|++.+++.+.+++.. -|+...
T Consensus 1128 ika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~ 1196 (1666)
T KOG0985|consen 1128 IKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVAN 1196 (1666)
T ss_pred Hhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchh
Confidence 333 344556666666667777776666666555554444433 345556666666555444433 455555
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 005943 460 LTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLV 539 (668)
Q Consensus 460 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 539 (668)
...+.+-|...+.++.|.-+|. ++.-|..|...+...|++..|...-++. .+..||..+-.+|...+.+
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhh
Confidence 5666666666666666666655 4456777888888888888877655443 2456888888888887776
Q ss_pred HHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 005943 540 EEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQL 617 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 617 (668)
.-|. |-- .++.....-...++..|...|.+++-..+++.. +.+ .....|..+...|.+- ++++-.+.++-.
T Consensus 1266 rlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1266 RLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred hHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 5553 220 122334556778889999999999999988865 322 3444555555555443 333333332222
Q ss_pred Hh-cC-------CCCchhHHHHHHHHHhcCChhhHHHH
Q 005943 618 LA-TS-------PEDPSKYVMLSNVYATLGMWDSLSKV 647 (668)
Q Consensus 618 ~~-~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~ 647 (668)
-. .+ -+....|..+.-+|.+-..||.|.-.
T Consensus 1339 wsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1339 WSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 11 11 11244677777777777777776544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-09 Score=97.86 Aligned_cols=276 Identities=13% Similarity=0.141 Sum_probs=212.7
Q ss_pred cCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHH
Q 005943 369 LGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVH 445 (668)
Q Consensus 369 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 445 (668)
.|++..|++...+-.+. ....|..-+.+-.+.|+.+.+-.++.+..+.-..++....-+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 58999999988876543 334555556777788999999999999887655666777777778888899999999988
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC-----------HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005943 446 AFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERD-----------VVSWTGIIVGCGQNGRAKEAIAYFQEM 514 (668)
Q Consensus 446 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m 514 (668)
+.+.+.+ +..+........+|.+.|++.....++..+.+.. ..+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 5567788888999999999999999999887632 235777777766666666666677776
Q ss_pred HHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHH
Q 005943 515 IQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--PFKPDKT 592 (668)
Q Consensus 515 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~ 592 (668)
-.. .+-++..-..++.-+.+.|+.++|.++.++..++ +.+|+.. .++ ...+-++.+.-.+..++. ..+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 554 4555666677788889999999999999998866 7777622 222 223456666555555544 1223446
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
.+.++...|.+++.+.+|...++.+++..|+ ...|..++.++.+.|+.++|.+..++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7888999999999999999999999998887 5799999999999999999999988876
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=96.95 Aligned_cols=283 Identities=11% Similarity=0.057 Sum_probs=165.6
Q ss_pred CChHHHHHHHccCCCCChhhH---HHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcH---HHHHHHHHHhccccchHhHHH
Q 005943 370 GNVKSALELFHRLPKKDVVAW---SGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQ---FIISSVLKVCSCLASLRRGKQ 443 (668)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~ 443 (668)
++.++|.+.|-+|.+.|..++ -+|-..|-+.|..++|+.+-+.+.++.--+.. ...-.+..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 455555555555554443332 23444455555555555555555443211111 122233344455555666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC--------HhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005943 444 VHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERD--------VVSWTGIIVGCGQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 515 (668)
+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+-+ ...|.-+...+....+.+.|...+++..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 666555533 2233455566667777777777776665444311 1234455566666778888888888877
Q ss_pred HCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHH
Q 005943 516 QSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTI 593 (668)
Q Consensus 516 ~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 593 (668)
+. .|+.. .-..+.+.....|+++.|.+.++...+. +..--..+...|..+|...|+.++...++.++ ...+....
T Consensus 208 qa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 208 QA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred hh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 74 34433 3445566777888888888888888754 33334677788888888888888888888766 34445444
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH--hcCChhhHHHHHHHHHhcCC
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA--TLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~ 656 (668)
-..+...-....-.+.|..+..+-+...|.-...+..+-.-.. +-|...+....+++|....+
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 4445444444444566777777777777775444443333333 23457777777777776666
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.5e-08 Score=87.19 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=46.4
Q ss_pred HHHHHcCCChhHHHHhhhhcCCC---ChhHHHHH-HHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCC
Q 005943 45 LSMYADFTSLNDAHKLFDEMARK---NIVSWTTM-VTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120 (668)
Q Consensus 45 l~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 120 (668)
+.-+....++..|..+++.-... ....-+.. ..++.+.|++++|...|.-+.+.. . |+...+..|.-...-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~-~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-D-APAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-C-CCcccchhHHHHHHHHHH
Confidence 44455566777777776654321 11122222 334456677777777777666543 2 455555555555555666
Q ss_pred hHHHHHHHHH
Q 005943 121 LDLGRLIHER 130 (668)
Q Consensus 121 ~~~a~~~~~~ 130 (668)
+.+|.++.+.
T Consensus 107 Y~eA~~~~~k 116 (557)
T KOG3785|consen 107 YIEAKSIAEK 116 (557)
T ss_pred HHHHHHHHhh
Confidence 6666665543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-10 Score=101.21 Aligned_cols=226 Identities=12% Similarity=0.010 Sum_probs=154.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 005943 391 SGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKC 470 (668)
Q Consensus 391 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 470 (668)
+.+.++|.+.|.+.+|...|+.-... .|-+.||-.|-..|.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-------------------------------------~~~~dTfllLskvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-------------------------------------FPHPDTFLLLSKVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-------------------------------------CCchhHHHHHHHHHHHh
Confidence 56778888888888888877766544 24444555555666666
Q ss_pred CChHHHHHHhccCCC--CCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 005943 471 GEIDDGLALFKFMPE--RDVV-SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFT 547 (668)
Q Consensus 471 ~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 547 (668)
.+++.|+.+|.+-.+ |..+ ...-+.+.+-..++.++|.++|+...+.. +.+......+...|...++++-|+.+|+
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHH
Confidence 666666666665543 3222 23334555555666667777776666642 2234455555556666667777777777
Q ss_pred hcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 548 SMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMP---FKP--DKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 548 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
++.+- |+ -+.+.|+.+.-+|.-.+++|-++.-|++.. ..| -...|..+.......||+..|.+.|+-++..+|
T Consensus 349 RiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 349 RILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 66632 43 345666666666666667776666666551 113 244677777778889999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 623 EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 623 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++...+..|+.+-.+.|++++|+.+++...+..+
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999999988776
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-07 Score=91.86 Aligned_cols=409 Identities=14% Similarity=0.082 Sum_probs=234.3
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC
Q 005943 204 LTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGN 283 (668)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 283 (668)
+..-+-++.+.+++++|+.+.+.-...... + . .+---.-...+.+..++|...++.. ...+
T Consensus 49 ~~cKvValIq~~ky~~ALk~ikk~~~~~~~--~----------~-~~fEKAYc~Yrlnk~Dealk~~~~~------~~~~ 109 (652)
T KOG2376|consen 49 IRCKVVALIQLDKYEDALKLIKKNGALLVI--N----------S-FFFEKAYCEYRLNKLDEALKTLKGL------DRLD 109 (652)
T ss_pred HhhhHhhhhhhhHHHHHHHHHHhcchhhhc--c----------h-hhHHHHHHHHHcccHHHHHHHHhcc------cccc
Confidence 344444566777778887665543311100 0 0 0001112234578888888888844 2223
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHH-
Q 005943 284 VALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYT-FTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSN- 361 (668)
Q Consensus 284 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 361 (668)
..+-..-...+.+.+++++|+++|+.+.+++..--..- -..++.+-.. .....+......| ..+|..
T Consensus 110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----------l~~~~~q~v~~v~-e~syel~ 178 (652)
T KOG2376|consen 110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----------LQVQLLQSVPEVP-EDSYELL 178 (652)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----------hhHHHHHhccCCC-cchHHHH
Confidence 22444445678889999999999999977654321111 1111111110 0011222223333 222322
Q ss_pred --HHHHHHhcCChHHHHHHHccC--------CCCCh----------hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 005943 362 --LIDLYARLGNVKSALELFHRL--------PKKDV----------VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN 421 (668)
Q Consensus 362 --l~~~~~~~~~~~~a~~~~~~~--------~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 421 (668)
....+...|++.+|+++++.. .+.|. ..--.|.-.+...|+.++|..+|...+.... +|
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D 257 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-AD 257 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CC
Confidence 345567789999999999877 22111 1233455667789999999999999988764 33
Q ss_pred HHHH----HHHHHHhccccchHh--HHHHHHH-----------HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 005943 422 QFII----SSVLKVCSCLASLRR--GKQVHAF-----------CVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP 484 (668)
Q Consensus 422 ~~~~----~~ll~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 484 (668)
.... |.++ ++..-.++.. ++..++. +...........-+.++..| .+..+.+.++-....
T Consensus 258 ~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 258 EPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP 334 (652)
T ss_pred chHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC
Confidence 3222 2222 2222222211 1111111 11111111112223344444 345667777766666
Q ss_pred CCC-HhHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCCHHHHHHHHH--------hccc
Q 005943 485 ERD-VVSWTGIIVGCG--QNGRAKEAIAYFQEMIQSRLKPNE--ITFLGVLSACRHAGLVEEAWTIFT--------SMKP 551 (668)
Q Consensus 485 ~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~ 551 (668)
... ...+.+++..+. +...+..+.+++...-+. .|.. .....++......|+++.|.+++. .+.
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~- 411 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL- 411 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-
Confidence 432 334445554433 223577788888777764 3443 355566667789999999999998 444
Q ss_pred ccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 552 EYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--------PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 552 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
.+.-.+.+..+++..+.+.++.+-|..++.+. ..++. ..++..++..-.++|+-++|...++++.+.+|
T Consensus 412 --~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 412 --EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred --hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 23334567777888888888877777777655 12222 22344444445678999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 623 EDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 623 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
++..+...++.+|++. +.++|..+-+.+.
T Consensus 490 ~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 490 NDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred chHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 9999999999888776 5677777665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-09 Score=105.06 Aligned_cols=231 Identities=14% Similarity=0.180 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhccccchHhHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCChHHHHHHhccCCC-------CC
Q 005943 422 QFIISSVLKVCSCLASLRRGKQVHAFCVKR-----GF-EKED-ITLTSLIDMYLKCGEIDDGLALFKFMPE-------RD 487 (668)
Q Consensus 422 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~ 487 (668)
..++..+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++.+|..+|+++.. ++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666777888888888888887766554 21 1222 2334567788889999999888887653 22
Q ss_pred ----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-CCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccC--
Q 005943 488 ----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQS-----RLK-PNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYG-- 554 (668)
Q Consensus 488 ----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~~-p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 554 (668)
..+++.|..+|.+.|++++|...+++..+- |.. |... -++.+...|...+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 346778888899999999998888876652 222 2222 366777788999999999998887765433
Q ss_pred CCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC---------CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 005943 555 LEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP---------FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLAT 620 (668)
Q Consensus 555 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 620 (668)
+.++ ..+++.|...|...|++++|.++++++- ..+ ....++.+...|.+.+...+|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4689999999999999999999998771 122 2557788888999999999999999998762
Q ss_pred -------CCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 621 -------SPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 621 -------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
.|+...+|..|+.+|.+.|++|+|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 24456678999999999999999999998876
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-07 Score=94.36 Aligned_cols=427 Identities=13% Similarity=0.055 Sum_probs=238.9
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHH
Q 005943 191 FCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLF 270 (668)
Q Consensus 191 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (668)
.+....+..|...|..+.-++.+.|+++.+.+.|++...--.. ..+.|+.+...|...|.-..|..++
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~------------~~e~w~~~als~saag~~s~Av~ll 380 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG------------EHERWYQLALSYSAAGSDSKAVNLL 380 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh------------hHHHHHHHHHHHHHhccchHHHHHH
Confidence 3344556678889999999999999999999999887633221 4567788888888999988999998
Q ss_pred HHhhhhhhcCCCCeeeHHHHH-HHHH-hCCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhccccchHHHHHHH
Q 005943 271 DQYSSWAASAYGNVALWNSMI-SGYV-LNEQNEEAITLLSHIHSS--GM--CIDSYTFTSALKACINLLNFNSRFALQVH 344 (668)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~--g~--~p~~~t~~~ll~~~~~~~~~~~~~a~~~~ 344 (668)
+.-... ...|+..+--.++ ..|. +.+.+++++++-.+.... +. ...+..|..+--+|...-.-..-..+
T Consensus 381 ~~~~~~--~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~se--- 455 (799)
T KOG4162|consen 381 RESLKK--SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSE--- 455 (799)
T ss_pred Hhhccc--ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHH---
Confidence 876431 1224333322222 3333 346677777776666552 11 11122222222222211000000000
Q ss_pred HHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 005943 345 GLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN 421 (668)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 421 (668)
+.....++.+.+++..+. |....-.+.--|+..++.+.|.+..++..+.+..-+
T Consensus 456 -----------------------R~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~ 512 (799)
T KOG4162|consen 456 -----------------------RDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS 512 (799)
T ss_pred -----------------------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc
Confidence 000112222233322211 111111122223344445555555555555444444
Q ss_pred HHHHHHHHHHhccccchHhHHHHHHHHHH-hCCCC------------------chhHHHHHHHHHH------hcCChHHH
Q 005943 422 QFIISSVLKVCSCLASLRRGKQVHAFCVK-RGFEK------------------EDITLTSLIDMYL------KCGEIDDG 476 (668)
Q Consensus 422 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~------------------~~~~~~~l~~~~~------~~~~~~~A 476 (668)
...|..+.-.+...+++..|+.+.+.... .|... ...|...++..+- ..++-...
T Consensus 513 ~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~ 592 (799)
T KOG4162|consen 513 AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKL 592 (799)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhh
Confidence 44555444445555555555554443322 11100 0001111111110 01111122
Q ss_pred HHHhccCC----CC--CHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHhhcCCCH
Q 005943 477 LALFKFMP----ER--DVVSWTGIIVGCGQNG---RAKEAIAYFQEMIQSRLKPNE--------ITFLGVLSACRHAGLV 539 (668)
Q Consensus 477 ~~~~~~~~----~~--~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~g~~ 539 (668)
.+....+. ++ ...++..+..-....+ ..+.. +...-+.|.. ..|......+.+.+..
T Consensus 593 ~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~ 666 (799)
T KOG4162|consen 593 LRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND 666 (799)
T ss_pred hhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc
Confidence 22222221 01 1223332222111111 11111 1111122222 2345566678889999
Q ss_pred HHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHH--HH
Q 005943 540 EEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSI--IA 614 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~--~~ 614 (668)
++|...+.+.. ++.| ....|......+...|++++|.+.|... ...| ++.+..++...+.+.|+...|.. ++
T Consensus 667 ~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 667 DEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred hHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 99998888887 4444 5778888888999999999999998877 4556 56678888889999999888888 99
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCceeEEEe
Q 005943 615 EQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWIEV 666 (668)
Q Consensus 615 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 666 (668)
..+.+.+|.++.+|..++.++.+.|+.++|..-|..........|--+|.-|
T Consensus 744 ~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~i 795 (799)
T KOG4162|consen 744 SDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSNI 795 (799)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccccc
Confidence 9999999999999999999999999999999999999988887777666543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=81.21 Aligned_cols=50 Identities=30% Similarity=0.525 Sum_probs=47.6
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005943 282 GNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACIN 331 (668)
Q Consensus 282 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 331 (668)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-11 Score=79.41 Aligned_cols=50 Identities=28% Similarity=0.509 Sum_probs=46.3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005943 486 RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH 535 (668)
Q Consensus 486 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 535 (668)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-06 Score=82.17 Aligned_cols=553 Identities=13% Similarity=0.124 Sum_probs=280.6
Q ss_pred HHHhcccCchhhhhhhHHHHHHhc-CCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhH
Q 005943 10 LRHCGQRRSIKQGKSLHCRIIKYG-LSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWA 88 (668)
Q Consensus 10 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 88 (668)
+.....+|++....+.|+..+..= +......|...+...-..|-++.+.+++++..+-++..-+..|..+++.+++++|
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHH
Confidence 344455566666666666665441 2233445556666655666666666666666665555566666666666666666
Q ss_pred HHHHHHHHhcCCC-----CCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CC--chHhhHHHhhhhhcCChh--
Q 005943 89 IRLYNHMLEYGSV-----EPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLE--YD--TVLMNTLLDMYVKCGSLT-- 157 (668)
Q Consensus 89 ~~~~~~m~~~~~~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~ll~~~~~~g~~~-- 157 (668)
-+.+......... +.+...|..+-...++.-+.-.-.. .+.+.+.|+. +| ...|++|-+-|.+.|+++
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 6666655432210 0222233333333333222111111 1112222221 12 134455555555555555
Q ss_pred HHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCC-CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHH
Q 005943 158 RKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFE-KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWT 236 (668)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 236 (668)
+.+|++--. ..-.+..+..+.+.-.++.+.++...++ -+....+.= -.-+++-.+.-|+.+....+...|
T Consensus 268 rDvyeeai~----~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~e-----d~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 268 RDVYEEAIQ----TVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEE-----DDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHHHHHHHH----hheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChh-----hhhhHHHHHHHHHHHHhccchHHH
Confidence 333332221 0001111122222111122222111111 000000000 111233444455555554444444
Q ss_pred HHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC------eeeHHHHHHHHHhCCChhHHHHHHHHH
Q 005943 237 GIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGN------VALWNSMISGYVLNEQNEEAITLLSHI 310 (668)
Q Consensus 237 ~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m 310 (668)
+++-.-...++..|..-+..+ .|+..+-...+.+..+. ..|. ...|-.+.+-|-.+|+++.|..+|++.
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 444332223444444444332 34455555555554332 2222 123566666677777777777777766
Q ss_pred HhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCC-------
Q 005943 311 HSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLP------- 383 (668)
Q Consensus 311 ~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 383 (668)
.+...+- ..-|...++ .-.++=.+..+++.|+++.++..
T Consensus 414 ~~V~y~~----v~dLa~vw~------------------------------~waemElrh~~~~~Al~lm~~A~~vP~~~~ 459 (835)
T KOG2047|consen 414 TKVPYKT----VEDLAEVWC------------------------------AWAEMELRHENFEAALKLMRRATHVPTNPE 459 (835)
T ss_pred hcCCccc----hHHHHHHHH------------------------------HHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence 5533211 111111111 11122222233333333333221
Q ss_pred --------------CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHH
Q 005943 384 --------------KKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCV 449 (668)
Q Consensus 384 --------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 449 (668)
.++...|...+..--..|-++....+|+.+.+..+.......|-.+ -+....-++++.+++++-+
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm-fLEeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM-FLEEHKYFEESFKAYERGI 538 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhhHHHHHHHHHHHcCC
Confidence 0244567767766667788888899999998876543333333221 2334445677777776544
Q ss_pred HhCCCCch-hHHHHHHHHHHh---cCChHHHHHHhccCCC--CCHhHHHHHHHHH----HhcCChHHHHHHHHHHHHCCC
Q 005943 450 KRGFEKED-ITLTSLIDMYLK---CGEIDDGLALFKFMPE--RDVVSWTGIIVGC----GQNGRAKEAIAYFQEMIQSRL 519 (668)
Q Consensus 450 ~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~----~~~~~~~~a~~~~~~m~~~g~ 519 (668)
..--.|.. ..|+.-+.-+.+ ...++.|..+|++..+ |. ..-..+.-.| -+.|-...|+.++++.... +
T Consensus 539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp-~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v 616 (835)
T KOG2047|consen 539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP-EHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-V 616 (835)
T ss_pred ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-C
Confidence 33223332 244444443332 3578999999998876 31 1111122222 2457888999999997654 5
Q ss_pred CCCHH--HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChh---HHHHHHHHhhhcCChHHHHHHHHhCC--CC--CC
Q 005943 520 KPNEI--TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLE---HYYCMVDLLGQAGCFDDAEQLIAEMP--FK--PD 590 (668)
Q Consensus 520 ~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--p~ 590 (668)
++... .|+..|.-....=.+.....+|++..+. -|+.. ...-..+.=.+.|..+.|..++.-.. .. .+
T Consensus 617 ~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~ 693 (835)
T KOG2047|consen 617 KEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVT 693 (835)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCC
Confidence 66543 6888887666655667788899998843 56643 34445566789999999999997662 22 36
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
...|.+.-.--.++|+-+. +++|+.+.
T Consensus 694 ~~fW~twk~FEvrHGnedT----~keMLRik 720 (835)
T KOG2047|consen 694 TEFWDTWKEFEVRHGNEDT----YKEMLRIK 720 (835)
T ss_pred hHHHHHHHHHHHhcCCHHH----HHHHHHHH
Confidence 7778888888899999555 55555533
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-07 Score=84.43 Aligned_cols=317 Identities=11% Similarity=0.016 Sum_probs=225.8
Q ss_pred CCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHH-hCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHH
Q 005943 314 GMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVT-SGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSG 392 (668)
Q Consensus 314 g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 392 (668)
.+.|...+....+.+++..-..+-..+...+-.+.. .-++.+......+.+.+...|+.++|...|++...-|+.+...
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 345555555555555443322211333333333333 3467788889999999999999999999999877554443222
Q ss_pred ---HHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 005943 393 ---LIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLK 469 (668)
Q Consensus 393 ---l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 469 (668)
..-.+.+.|+.++...+...+.... +-....|-.-.......++++.|..+-++.++.. +.+...|-.-..++..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 2334567888888888777775432 1122222223334456678888888888777654 3345555555677788
Q ss_pred cCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhh-cCCCHHHHHH
Q 005943 470 CGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVL-SACR-HAGLVEEAWT 544 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~ 544 (668)
.+++++|.-.|+.... | +...|.-|+.+|...|++.+|..+-.+.... ++-+..+...+. ..|. ....-++|..
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 9999999999987653 3 7889999999999999999999888776654 344556665553 3333 3334578999
Q ss_pred HHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 545 IFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 545 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
+++... ...|+ ....+.+...+...|..+++..++++. ..-||....+.+...+...+.+++|...|..++.++|
T Consensus 426 f~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 998887 55776 667788889999999999999999987 5678999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHH
Q 005943 623 EDPSKYVMLSNVYA 636 (668)
Q Consensus 623 ~~~~~~~~l~~~~~ 636 (668)
.+..+..-+-..-.
T Consensus 503 ~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 503 KSKRTLRGLRLLEK 516 (564)
T ss_pred cchHHHHHHHHHHh
Confidence 99877776654433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.2e-08 Score=92.30 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=211.1
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCCh---hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHH
Q 005943 351 GYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDV---VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISS 427 (668)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 427 (668)
+..-+..+.....+-+...+++.+..++++.+.+.|+ ..+..-|.++...|+..+-..+-.+|++.- +-.+.+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 3344555556666777788899999999888876544 455566778888898888888888887763 455678888
Q ss_pred HHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCCh
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRA 504 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 504 (668)
+..-|...|+.++|.+.|.+..... +.-...|-...+.|+-.|.-+.|+..+....+ | ....+--+..-|.+.+..
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 8888888899999999998776543 22235677788889999999998888775543 2 122233355567888999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccC-C---CC-ChhHHHHHHHHhhhcCChHHH
Q 005943 505 KEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYG-L---EP-HLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 505 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~---~p-~~~~~~~l~~~~~~~g~~~~A 578 (668)
+.|.++|.+... +.|+ +..++-+.-.....+.+.+|..+|+....... + .+ -..+++.|..+|.+.+.+++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999998887 5554 55667776667778999999999988762111 1 11 234688899999999999999
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 579 EQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 579 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+..+++. . .+.+..++.++.-.+...|+++.|.+.|.+++.+.|++..+-..|..+.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999987 3 3457888888998999999999999999999999999977666666543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-07 Score=88.68 Aligned_cols=462 Identities=11% Similarity=0.080 Sum_probs=250.1
Q ss_pred HHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHh--cCC
Q 005943 6 IVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYT--SNK 83 (668)
Q Consensus 6 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~--~~~ 83 (668)
+.+=+.-+...|++++|.+...+++..+ +.+...+..-+-++.+.+++++|+.+.+.-....+...-.+=.+|| +.+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 3444556777889999999999999876 6677778888888899999999998777654322221111355555 678
Q ss_pred ChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CCchHhhHHHhhhhhcCChhHHHHh
Q 005943 84 RPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLE-YDTVLMNTLLDMYVKCGSLTRKLFD 162 (668)
Q Consensus 84 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~~~~~ 162 (668)
..++|+..++ |..+.|..+...=.+.|.+.|++++|..+++.+.+++.+ -|...-..++.+-...
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l--------- 159 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL--------- 159 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh---------
Confidence 9999999888 322133335555667889999999999999999887643 1222222222221110
Q ss_pred hhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHH---HHHhCCChHHHHHHhhccC--------CCC
Q 005943 163 QYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLID---MYLKCGEIDDGLALFNFMP--------ERD 231 (668)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~~~--------~~~ 231 (668)
.+. .+......| ..+|..+.. .++..|++.+|+++++... ..+
T Consensus 160 ------------------------~~~-~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d 213 (652)
T KOG2376|consen 160 ------------------------QVQ-LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED 213 (652)
T ss_pred ------------------------hHH-HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc
Confidence 010 122222223 445555543 4567899999999998873 111
Q ss_pred cc--hHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeee----HHHHHHHHHhCCChh-HHH
Q 005943 232 VV--SWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVAL----WNSMISGYVLNEQNE-EAI 304 (668)
Q Consensus 232 ~~--~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~-~a~ 304 (668)
.. -+..-+ ..+---+.-++-..|+.++|..++..+.+. ..+|... -|.|+..-....-++ .++
T Consensus 214 ~~eEeie~el-------~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~---~~~D~~~~Av~~NNLva~~~d~~~~d~~~l 283 (652)
T KOG2376|consen 214 TNEEEIEEEL-------NPIRVQLAYVLQLQGQTAEASSIYVDIIKR---NPADEPSLAVAVNNLVALSKDQNYFDGDLL 283 (652)
T ss_pred cchhhHHHHH-------HHHHHHHHHHHHHhcchHHHHHHHHHHHHh---cCCCchHHHHHhcchhhhccccccCchHHH
Confidence 10 000000 011122333444556666666666555442 2222211 111111111111111 111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC
Q 005943 305 TLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK 384 (668)
Q Consensus 305 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (668)
..++..... +. +....-+..-. .-....-+.++.+| .+..+.+.++...++.
T Consensus 284 ~~k~~~~~~--------l~--------------~~~l~~Ls~~q----k~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~ 335 (652)
T KOG2376|consen 284 KSKKSQVFK--------LA--------------EFLLSKLSKKQ----KQAIYRNNALLALF--TNKMDQVRELSASLPG 335 (652)
T ss_pred HHHHHHHHH--------hH--------------HHHHHHHHHHH----HHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc
Confidence 111111100 00 00000000000 00011112233333 3556667776666665
Q ss_pred CC-hhhHHHHHHHHHh--cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHH--------HHHHhCC
Q 005943 385 KD-VVAWSGLIMGCTK--HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHA--------FCVKRGF 453 (668)
Q Consensus 385 ~~-~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~ 453 (668)
.. ...+..++....+ ......+.+++...-+....-+....-..+......|+++.|.+++. .+.+.+.
T Consensus 336 ~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~ 415 (652)
T KOG2376|consen 336 MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH 415 (652)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 43 3344444443322 22466677777666555444344555666667777888888888887 4444443
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC------CCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 005943 454 EKEDITLTSLIDMYLKCGEIDDGLALFKFMPE------RDVV----SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE 523 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 523 (668)
. +.+...++..+.+.++-+.|.+++.+..+ +... ++.-+...-.+.|+.++|..+++++.+.. ++|.
T Consensus 416 ~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~ 492 (652)
T KOG2376|consen 416 L--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDT 492 (652)
T ss_pred C--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchH
Confidence 3 34556677777777777777777665442 1222 22233333356688888888888888752 5566
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
.+...++.+|++. +++.|..+-..+.
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 6777777777765 4566666544443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.8e-09 Score=108.51 Aligned_cols=245 Identities=13% Similarity=-0.013 Sum_probs=173.0
Q ss_pred CcHHHHHHHHHHHHcCCCCcH-HHHHHHHHHhc---------cccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005943 402 LNSLAYLLFRDMINSNQDVNQ-FIISSVLKVCS---------CLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG 471 (668)
Q Consensus 402 ~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (668)
+.++|..+|++..+.. |+. ..+..+..++. ..++.++|...+++..+.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3467777887776543 332 23333322221 3355788888888887775 556777888888889999
Q ss_pred ChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHH
Q 005943 472 EIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFT 547 (668)
Q Consensus 472 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 547 (668)
++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998764 4 4567888889999999999999999999985 55532 33344445667899999999999
Q ss_pred hcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 548 SMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTI-WASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 548 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
++... ..| +...+..+..+|...|+.++|...+.++ ...|+... .+.+...+...| +.|...++++.+..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88743 235 3556778888999999999999999987 34455444 444445566666 47777777777733222
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.-...+..+|.-.|+.+.+..+ +++.+.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 22333377778888998888887 77766543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-09 Score=89.67 Aligned_cols=161 Identities=13% Similarity=0.102 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHH
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDL 568 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 568 (668)
...|.-.|.+.|+...|..-+++.+++ .|+. .++..+...|.+.|..+.|.+-|++.. .+.| +-.+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 444566677777777777777777774 4543 366777777777777777777777766 4455 35666777777
Q ss_pred hhhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhH
Q 005943 569 LGQAGCFDDAEQLIAEMPFKP----DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSL 644 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 644 (668)
++..|++++|...|+..-..| -..+|..+.....+.|+++.|...+++.++.+|+.+.....++..+...|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 777777777777777663222 2346666666666777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCC
Q 005943 645 SKVRKAGKKLGE 656 (668)
Q Consensus 645 ~~~~~~~~~~~~ 656 (668)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 777777665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-08 Score=94.90 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005943 388 VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMY 467 (668)
Q Consensus 388 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (668)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------------------------p~~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD------------------------------------PDDYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHHHH
Confidence 456666677777777777777777665432 22334444455555
Q ss_pred HhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHH
Q 005943 468 LKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAW 543 (668)
Q Consensus 468 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 543 (668)
...|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+....| ....+..+..++...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 556666666665554442 233455556666667777777777777776542222 2335555666777778888888
Q ss_pred HHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 005943 544 TIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLAT 620 (668)
Q Consensus 544 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 620 (668)
..+++.... .| +...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.+.|..+.+.+...
T Consensus 156 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 877777632 33 3556777777777888888888777766 22 234555556666677778888888777776655
Q ss_pred CC
Q 005943 621 SP 622 (668)
Q Consensus 621 ~p 622 (668)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 43
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7e-09 Score=108.43 Aligned_cols=213 Identities=13% Similarity=0.015 Sum_probs=164.7
Q ss_pred cchHhHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCC
Q 005943 436 ASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYL---------KCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGR 503 (668)
Q Consensus 436 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 503 (668)
++.++|...+++..+.. +.+...+..+..+|. ..+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678888898887664 334455555555443 23457899999988774 4 56778888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCCh-hHHHHHHHHhhhcCChHHHHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL-EHYYCMVDLLGQAGCFDDAEQL 581 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 581 (668)
+++|+..|++..+. .|+ ...+..+..++...|++++|...+++.. ...|+. ..+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999995 565 5578888889999999999999999998 446653 3334445556778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 582 IAEMP--FKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 582 ~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++++. ..|+ ...+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+...
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 98872 2354 4446667777889999999999999998888988888888888888888 488888888776533
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-07 Score=88.18 Aligned_cols=193 Identities=13% Similarity=0.172 Sum_probs=110.5
Q ss_pred HHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHH
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAI 508 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 508 (668)
+.+......+.+|..+++.+..... ....|..+.+-|...|+++.|.++|.+.- .++-.|..|.+.|+|++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 3444555667777777776665532 23345566677777777777777776543 3455666777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCC
Q 005943 509 AYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFK 588 (668)
Q Consensus 509 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 588 (668)
++-.+.. |-......|..-..-+-+.|++.+|.++|-.+. .|+.. +..|-+.|..++.+++..+-.-.
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~a-----iqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDKA-----IQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchHH-----HHHHHhhCcchHHHHHHHHhChh
Confidence 7655432 222333345555555666777777776654443 34432 45666777777777776665311
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 589 PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 589 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
--..|...+..-+...|+.+.|.+-|-++ .-+...+..|..++.|++|-++-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHH
Confidence 12234444555555666666666555442 23444445555555555555544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-06 Score=79.29 Aligned_cols=449 Identities=15% Similarity=0.122 Sum_probs=212.0
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCC
Q 005943 76 VTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGS 155 (668)
Q Consensus 76 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 155 (668)
+.-+...+++..|+.+++.-...+.. -...+-..+..++...|++++|...+..+.... .|+...+-.|--++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 44456678888888888776654422 122233334556678889999988888877643 3333333222222222222
Q ss_pred hh--HHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChh-hHHHHHHHHHhCCChHHHHHHhhccCCCCc
Q 005943 156 LT--RKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDV-TLTSLIDMYLKCGEIDDGLALFNFMPERDV 232 (668)
Q Consensus 156 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 232 (668)
.. +.+-.. . |+.. .-..|.....+.|+-++-..+-+.+.+...
T Consensus 107 Y~eA~~~~~k---------------------------------a-~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~E 152 (557)
T KOG3785|consen 107 YIEAKSIAEK---------------------------------A-PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLE 152 (557)
T ss_pred HHHHHHHHhh---------------------------------C-CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHH
Confidence 22 111110 1 2222 223333444455555555555544442111
Q ss_pred chHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHH-HHHHhCCChhHHHHHHHHHH
Q 005943 233 VSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMI-SGYVLNEQNEEAITLLSHIH 311 (668)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~ 311 (668)
... +|..+....-.+.+|++++.++.. ..|+-...|.-+ -+|.+..-++-+.+++..-.
T Consensus 153 dqL----------------SLAsvhYmR~HYQeAIdvYkrvL~----dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 153 DQL----------------SLASVHYMRMHYQEAIDVYKRVLQ----DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHH----------------hHHHHHHHHHHHHHHHHHHHHHHh----cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 110 222333333456667777766644 344444444433 34455555666666665554
Q ss_pred hCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhc-----CChHHHHHHHccCCCCC
Q 005943 312 SSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARL-----GNVKSALELFHRLPKKD 386 (668)
Q Consensus 312 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~ 386 (668)
.. .||+ |+..=+.+|....-+....+..-.+.+.+.+-.. | ..+.-+++. .+-+.|++++-.+.+.-
T Consensus 213 ~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~I 284 (557)
T KOG3785|consen 213 RQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHI 284 (557)
T ss_pred Hh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence 42 1332 2222233333322222233333333333222111 0 122222222 34456666665544433
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHH-----hccccchHhHHHHHHHHHHhCCCCchhH-H
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKV-----CSCLASLRRGKQVHAFCVKRGFEKEDIT-L 460 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~ 460 (668)
+.+--.|+--|.+.++..+|..+.+++. ...|-......+..+ ........-|.+.|+..-+.+...|... -
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 3333344445677788888877776652 122333333222222 1222234445555555544443333221 2
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhc
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMPE----RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFL-GVLSACRH 535 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~ 535 (668)
.++..++.-..++++++..++.+.. .|...|| +..+++..|.+.+|.++|-......++ |..+|. .+.++|.+
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh
Confidence 2334444445566666666655542 2333333 556666667777777776555433222 334443 34446667
Q ss_pred CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHH
Q 005943 536 AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWA 595 (668)
Q Consensus 536 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 595 (668)
.+.++.|+.++-.+.. ..-.......+.+-+.+++.+--|.+.|+.+ ...|++..|.
T Consensus 441 nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred cCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence 7777777666554431 1112333444555666666666666666665 2445555553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.6e-06 Score=82.54 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=95.2
Q ss_pred HHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCCh
Q 005943 6 IVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRP 85 (668)
Q Consensus 6 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 85 (668)
....+.+....+.|+.|..+++.+..+.. -...|..+.+-|+..|+++-|.++|-+.. .++-.|..|.+.|+|
T Consensus 735 ~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 735 LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccH
Confidence 44566777778899999999998887652 33457778888999999999999997653 456678889999999
Q ss_pred hhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh
Q 005943 86 NWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT 157 (668)
Q Consensus 86 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 157 (668)
..|.++-++.... . .....|-+-..-+-+.|++.+|.+++-.+- .|+. .|..|-+.|..+
T Consensus 808 ~da~kla~e~~~~--e-~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~d 867 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--E-ATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDD 867 (1636)
T ss_pred HHHHHHHHHhcCc--h-hHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcch
Confidence 9998886665432 2 455667777777788888888888765432 2332 345555555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.1e-09 Score=100.52 Aligned_cols=218 Identities=10% Similarity=-0.029 Sum_probs=107.3
Q ss_pred hcCCcHHHHHHHHHHHHcC-CCCc--HHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 005943 399 KHGLNSLAYLLFRDMINSN-QDVN--QFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDD 475 (668)
Q Consensus 399 ~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (668)
..+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...|+...+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3445566666666666432 1222 2334444455566666666666666655543 3345566666666666666666
Q ss_pred HHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 476 GLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 476 A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
|...|+...+ | +...|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+++...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 6666665543 3 2345555555666666666666666666653 34332111111223344556666666644332
Q ss_pred cCCCCChhHHHHHHHHhhhcCChHH--HHHHHHhC-CCCC-----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 553 YGLEPHLEHYYCMVDLLGQAGCFDD--AEQLIAEM-PFKP-----DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 553 ~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
...|+...+ .+... ..|+..+ +.+.+.+. ...| ....|..+...+.+.|++++|...|+++.+.+|.+
T Consensus 194 -~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 222322211 12222 2333322 22222211 1111 12345555666666666666666666666666543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=96.71 Aligned_cols=233 Identities=13% Similarity=0.109 Sum_probs=185.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHccCCC--CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Q 005943 357 IVGSNLIDLYARLGNVKSALELFHRLPK--KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSC 434 (668)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 434 (668)
.--+-+..+|.+.|-+.+|++.|+...+ +-+.||-.|.+.|.+..++..|+.++.+-.+. .
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--f--------------- 286 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--F--------------- 286 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--C---------------
Confidence 3345688999999999999999987654 57788999999999999999999999887654 1
Q ss_pred ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 005943 435 LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYF 511 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 511 (668)
+.++....-+...+-..++.++|.++|+...+ .++....++...|...++.+-|+.+|
T Consensus 287 -------------------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 287 -------------------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred -------------------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence 33333344455666667788888888887765 35666777778888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC--CC
Q 005943 512 QEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEM--PF 587 (668)
Q Consensus 512 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 587 (668)
+++.+.|+. ++..|+.+.-+|...+.+|-++.-|++.... --.|+ ..+|-.+.......|++.-|.+.|+-. ..
T Consensus 348 RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 999999854 6678888888999999999999988888754 33344 567888888889999999999999876 33
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 005943 588 KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSK 627 (668)
Q Consensus 588 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 627 (668)
..+...++.+...-.+.|+++.|..++..+....|+-...
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 3466788988888899999999999999999988875443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-05 Score=81.05 Aligned_cols=233 Identities=13% Similarity=0.048 Sum_probs=176.3
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDM 466 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 466 (668)
+..|+.+..+-.+.|...+|++-|-+. .|+..|..++..+.+.|.+++-..++...++..-.|.+ -+.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 457889999999999999988877543 46788999999999999999999999888887655554 4578899
Q ss_pred HHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 005943 467 YLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIF 546 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 546 (668)
|++.++..+.++++ ..||+.....+..-|...|.++.|.-+|... ..|..+...+...|+++.|...-
T Consensus 1176 yAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988877664 3578888888888889999998887776543 34677777788888888887664
Q ss_pred HhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 547 TSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 547 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
++.. +..+|..+..+|...+.+.-|. +..+.+-....-..-++.-|...|.+++-+.+++..+.+......
T Consensus 1244 RKAn-------s~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1244 RKAN-------STKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred hhcc-------chhHHHHHHHHHhchhhhhHHH--hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 4432 4678888888887766554332 111122345566788999999999999999999999999888888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHH
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
.+..|+-+|.+- +.++-.+.++
T Consensus 1315 mfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1315 MFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHH
Confidence 888888777654 3344444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-06 Score=85.25 Aligned_cols=384 Identities=10% Similarity=0.038 Sum_probs=206.4
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA 278 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 278 (668)
.+.+.|..+.-.+....++++|+..|+.....+.. +...+..+.-.-+..|+++..........+
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLq--- 137 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQ--- 137 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---
Confidence 35667777777777788888999888877733322 455666666666666777666666555544
Q ss_pred cCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCcc
Q 005943 279 SAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSSG-MCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDY 356 (668)
Q Consensus 279 ~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 356 (668)
..| ....|..+..++.-.|+...|..++++..+.. -.|+...|......+.
T Consensus 138 -l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly-------------------------- 190 (700)
T KOG1156|consen 138 -LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLY-------------------------- 190 (700)
T ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH--------------------------
Confidence 333 34557777777778888888888888877654 2455555532211111
Q ss_pred chHHHHHHHHHhcCChHHHHHHHccCCCC--Chh-hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc
Q 005943 357 IVGSNLIDLYARLGNVKSALELFHRLPKK--DVV-AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCS 433 (668)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 433 (668)
-.....+.|..+.|.+.+...... |-. .-..-...+.+.++.++|..++..++.. .||..-|...+..+.
T Consensus 191 -----~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 191 -----QNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKAL 263 (700)
T ss_pred -----HHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHH
Confidence 112234567777777776655442 222 2233445667788888888888888765 355555544443332
Q ss_pred -cccchHhH-HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 005943 434 -CLASLRRG-KQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYF 511 (668)
Q Consensus 434 -~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 511 (668)
+..+.-++ ..++....+.- |.......+ ..+ ...-..-.+..-.++
T Consensus 264 gk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rl--------------------------pls----vl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 264 GKIKDMLEALKALYAILSEKY--PRHECPRRL--------------------------PLS----VLNGEELKEIVDKYL 311 (700)
T ss_pred HHHhhhHHHHHHHHHHHhhcC--cccccchhc--------------------------cHH----HhCcchhHHHHHHHH
Confidence 11111111 12222222110 000000000 000 000011112223334
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCCHH---H-HHHHHHhcccc---------cCCCCChh--HHHHHHHHhhhcCChH
Q 005943 512 QEMIQSRLKPNEITFLGVLSACRHAGLVE---E-AWTIFTSMKPE---------YGLEPHLE--HYYCMVDLLGQAGCFD 576 (668)
Q Consensus 512 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~---~-a~~~~~~~~~~---------~~~~p~~~--~~~~l~~~~~~~g~~~ 576 (668)
..+.+.|+++--..+..+-. .-...+ + +..+...+... ..-+|+.. ++-.++..+-+.|+++
T Consensus 312 ~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 44455554432222222211 111100 0 11111111100 00144433 3445667777888888
Q ss_pred HHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 577 DAEQLIAEM-PFKPDKT-IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 577 ~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
.|..+++.. .-.|+.. .|..-.+.+...|+.+.|..+++++.+++..|..+-...++-..+..+.++|.+++......
T Consensus 389 ~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 389 VALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 888888776 4445433 44445566777788888888888888888777766667777778888888888887777665
Q ss_pred CC------CCCceeEEEe
Q 005943 655 GE------KKAGMSWIEV 666 (668)
Q Consensus 655 ~~------~~~~~~~~~~ 666 (668)
|. .+....|.++
T Consensus 469 ~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 469 GFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred ccchhhhHHHhhhHHHhH
Confidence 53 2334555554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-06 Score=87.65 Aligned_cols=415 Identities=12% Similarity=0.059 Sum_probs=255.0
Q ss_pred HHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeH
Q 005943 208 IDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALW 287 (668)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 287 (668)
...+...|++++|++.++.-...-+. ...........+.+.|+.++|..++..+.. ..|+...|
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~D------------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~----rNPdn~~Y 74 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILD------------KLAVLEKRAELLLKLGRKEEAEKIYRELID----RNPDNYDY 74 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHH
Confidence 45567899999999999875533221 356777888999999999999999999977 56666655
Q ss_pred HHHHHHHH-h-----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHH
Q 005943 288 NSMISGYV-L-----NEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSN 361 (668)
Q Consensus 288 ~~li~~~~-~-----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (668)
...+..+. - ..+.+....+|+++...- |.......+.-.+.. |+--...+...+..+.+.|+++ +++.
T Consensus 75 y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvPs---lF~~ 148 (517)
T PF12569_consen 75 YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVPS---LFSN 148 (517)
T ss_pred HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCch---HHHH
Confidence 55444443 1 235677888898886643 433333222222222 2211145556666667777654 4444
Q ss_pred HHHHHHhcCChHHHHHHHccCC----C--------------CCh--hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 005943 362 LIDLYARLGNVKSALELFHRLP----K--------------KDV--VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN 421 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~----~--------------~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 421 (668)
|-..|.......-..+++.... . |.. .++.-+...|...|++++|++++++.++.. |+
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt 226 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PT 226 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CC
Confidence 4445554444333344433321 1 122 244666788999999999999999988764 44
Q ss_pred -HHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCH------h----H
Q 005943 422 -QFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDV------V----S 490 (668)
Q Consensus 422 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~----~ 490 (668)
+..|..-.+.+-+.|++.+|...++..+... ..|...-+-.+..+.+.|+.++|.+++....+++. . .
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 6677888889999999999999999998876 45677777788999999999999999988776441 1 1
Q ss_pred H--HHHHHHHHhcCChHHHHHHHHHHHHC--CCC-------------CCHHHHHHHHHHhhcCCC-------HHHHHHHH
Q 005943 491 W--TGIIVGCGQNGRAKEAIAYFQEMIQS--RLK-------------PNEITFLGVLSACRHAGL-------VEEAWTIF 546 (668)
Q Consensus 491 ~--~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~-------------p~~~~~~~ll~~~~~~g~-------~~~a~~~~ 546 (668)
| .....+|.+.|++..|+..|....+. .+. ....+|.-+++..-+... ...|.+++
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iY 385 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIY 385 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 2 33467889999999998887776653 111 222233333332222111 13455555
Q ss_pred HhcccccCCCCCh-----------hHHHHHHHHh---hhcCChHHHHHHH-H----------hC----CCCCCHHHHHHH
Q 005943 547 TSMKPEYGLEPHL-----------EHYYCMVDLL---GQAGCFDDAEQLI-A----------EM----PFKPDKTIWASM 597 (668)
Q Consensus 547 ~~~~~~~~~~p~~-----------~~~~~l~~~~---~~~g~~~~A~~~~-~----------~~----~~~p~~~~~~~l 597 (668)
-.+.......... .--..+..-. .+....+++...- + +. +.+.|... .
T Consensus 386 l~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~ 462 (517)
T PF12569_consen 386 LELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---L 462 (517)
T ss_pred HHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---c
Confidence 5554321111000 0001111111 1111111111111 0 00 11112111 1
Q ss_pred HHHHHhhC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 598 LKACETHN-NTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 598 ~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
..-+.+.. =.++|.++++-+.+..|++..+|..-..+|.+.|++--|.+.+++
T Consensus 463 GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 463 GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 22223444 477799999999999999999999999999999999988887764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-07 Score=95.76 Aligned_cols=259 Identities=11% Similarity=0.096 Sum_probs=152.3
Q ss_pred HHHHHhcCChHHHHHHHccCCCC--Ch-hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc-cccch
Q 005943 363 IDLYARLGNVKSALELFHRLPKK--DV-VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCS-CLASL 438 (668)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~ 438 (668)
...+...|++++|++.++.-... |. .........+.+.|+.++|..+|+.+++.+ |+...|...+..+. -...
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~- 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ- 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc-
Confidence 34456677777777777664432 32 334455666777777777777777777664 34443333333222 0000
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCHhHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRA-KEAIAYFQEMI 515 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~ 515 (668)
......+...++|+++.. |.......+.-.+.....+ ..+..++..+.
T Consensus 88 -----------------------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 88 -----------------------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred -----------------------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHH
Confidence 000122333333333321 1111111111111111112 23444555666
Q ss_pred HCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccccc-------------CCCCCh--hHHHHHHHHhhhcCChHHHHH
Q 005943 516 QSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEY-------------GLEPHL--EHYYCMVDLLGQAGCFDDAEQ 580 (668)
Q Consensus 516 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 580 (668)
..|+++ +|..+-..|......+-..+++....... .-+|+. .++..+...|-..|++++|++
T Consensus 139 ~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 139 RKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred hcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 666544 34444444444444444444444432210 113443 345667888889999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 581 LIAEM-PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 581 ~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++++. ...|. +..|..-...+-+.|++++|.+..+.+.++++.|..+-...+..+.+.|++++|.+++......+.
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99877 44565 567777888888999999999999999999999998888999999999999999999988876664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-06 Score=77.16 Aligned_cols=420 Identities=12% Similarity=0.042 Sum_probs=231.8
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 005943 196 GFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSS 275 (668)
Q Consensus 196 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 275 (668)
|+....--+...+..+.+..++.+|++++....++++. +....+.|...|....++..|-..++++..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~------------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q 72 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR------------SRAGLSLLGYCYYRLQEFALAAECYEQLGQ 72 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555777888888999999999999888776654 355677888889999999999999999866
Q ss_pred hhhcCCCCeeeHHHH-HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhCC
Q 005943 276 WAASAYGNVALWNSM-ISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACIN--LLNFNSRFALQVHGLIVTSGY 352 (668)
Q Consensus 276 ~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~~~a~~~~~~~~~~~~ 352 (668)
..|...-|... ...+.+.+.+..|+++...|... |+...-..-+.+..+ .+++ ..+..+.++.-.
T Consensus 73 ----l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl--~g~rsLveQlp~--- 140 (459)
T KOG4340|consen 73 ----LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDL--PGSRSLVEQLPS--- 140 (459)
T ss_pred ----hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccC--cchHHHHHhccC---
Confidence 56655555433 45677888899999998888653 222221222222222 2233 333333333211
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHccCCCC----ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005943 353 ELDYIVGSNLIDLYARLGNVKSALELFHRLPKK----DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSV 428 (668)
Q Consensus 353 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 428 (668)
+-+..+.+.......+.|+.+.|.+-|+...+- ....||..+..| +.|+...|+++..+++++|++..+..-..+
T Consensus 141 en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 141 ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 112333333333445666666666666655542 334555444433 446666666666666666653222100000
Q ss_pred HHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-----CCHhHHHHHHHHHHhcCC
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE-----RDVVSWTGIIVGCGQNGR 503 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 503 (668)
..--.....+..-..+ -.. .-+..+|.-...+.+.++++.|.+.+..|+- -|+++...+.-.- -.++
T Consensus 220 ~tegiDvrsvgNt~~l----h~S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~ 291 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVL----HQS---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDAR 291 (459)
T ss_pred eeccCchhcccchHHH----HHH---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCC
Confidence 0000000000000000 000 0011233334445688999999999999984 3666655443221 2344
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCC-CChhHHHHHHHHhhhcCChHHHHHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLE-PHLEHYYCMVDLLGQAGCFDDAEQLI 582 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~ 582 (668)
+.+..+-+.-+.+.. +-...||..++-.||+..-++.|-.++.+-..- ... .+...|+.|=....-.-..++|.+-+
T Consensus 292 p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LLdaLIt~qT~pEea~KKL 369 (459)
T KOG4340|consen 292 PTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLLDALITCQTAPEEAFKKL 369 (459)
T ss_pred ccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 555555555555542 234569999999999999999999888665421 221 23445554433334455677777766
Q ss_pred HhCCCCCCHHHHHHHHHH-HHhhCCHH----HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 583 AEMPFKPDKTIWASMLKA-CETHNNTK----LVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 583 ~~~~~~p~~~~~~~l~~~-~~~~~~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
+.+....-...-...+.. -.++.+-+ .+.+-|++.+++.- .+....++.|....|+..+.+.|+...+
T Consensus 370 ~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 370 DGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 655211111111112222 12222222 23334444444332 2567788899999999999999887654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=93.66 Aligned_cols=251 Identities=13% Similarity=0.091 Sum_probs=133.4
Q ss_pred HHHHHhcCChHHHHHHHccCCCC----ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 363 IDLYARLGNVKSALELFHRLPKK----DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
++-+.-.|++..++.-.+ .... +.....-+.+++...|+.+.++ .++.... .|....+..+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344455688888875444 2221 2223445567777778766443 3333332 56655555555555443444
Q ss_pred HhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005943 439 RRGKQVHAFCVKRGFE-KEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS 517 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 517 (668)
+.+..-++.....+.. .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444333332222222 22222233334556677777777777665 44555566667777777777777777777663
Q ss_pred CCCCCHHHHHHHHHHh----hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CH
Q 005943 518 RLKPNEITFLGVLSAC----RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DK 591 (668)
Q Consensus 518 g~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 591 (668)
..|.. ...+..++ .-.+.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ...| +.
T Consensus 161 --~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 161 --DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp --SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred --CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 33432 22222222 223357777777777654 34456666777777777777777777776665 2223 44
Q ss_pred HHHHHHHHHHHhhCCH-HHHHHHHHHHHhcCCCCc
Q 005943 592 TIWASMLKACETHNNT-KLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 625 (668)
.++..++......|+. +.+.+++.++....|+.+
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 4555555555555555 556666666666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-06 Score=86.56 Aligned_cols=582 Identities=13% Similarity=0.015 Sum_probs=299.6
Q ss_pred chhhhhhhHHHHHHhcCCCC-ccchHHHHHHHHcCCChhHHHHhhhhcCC---CChhHHHHHHHHHhcCCChhhHHHHHH
Q 005943 18 SIKQGKSLHCRIIKYGLSQD-IFTGNNLLSMYADFTSLNDAHKLFDEMAR---KNIVSWTTMVTAYTSNKRPNWAIRLYN 93 (668)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 93 (668)
+...+...|-+.++.. |+ ...|..|...|...-+...|.+.|+..-+ .+...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3555555555554432 32 33688888888887788888888888765 355577888888888889988888844
Q ss_pred HHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhhhhhhhc
Q 005943 94 HMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASA 171 (668)
Q Consensus 94 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~~~~~~~ 171 (668)
..-+......-..-|..+.-.+.+.++...|..-|+...+..+ -|...|..+..+|..+|+.. -++|+....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~----- 624 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASL----- 624 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHh-----
Confidence 4333321101112223334456678888888888888776543 36778888888888888877 555544443
Q ss_pred CCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHH--HHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhh
Q 005943 172 YGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLI--DMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFT 249 (668)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (668)
+.|+ .+|...- -.-+..|.+++|+..+..+...-. .+.+...+ -..+
T Consensus 625 -------------------------LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s-~e~~~q~g----LaE~ 673 (1238)
T KOG1127|consen 625 -------------------------LRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFS-LERTGQNG----LAES 673 (1238)
T ss_pred -------------------------cCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHhhhh----HHHH
Confidence 1232 2233222 234567888998888876661100 00000000 2233
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhh-----hhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005943 250 LSALVDMYSNCNVLCEARKLFDQYSSW-----AASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS 324 (668)
Q Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 324 (668)
+-.+...+.-.|-...|..+|+.-.+. ......+...|-.+ ..|..+|-... .. .|+.....+
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~i 741 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLII 741 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHH
Confidence 333333344444444455544443210 00001111112211 12223333322 11 233333333
Q ss_pred HHHHHHhccccchHH--HHHHHHHHHHhCCCCccchHHHHHHHHHh----cC----ChHHHHHHHccCCC---CChhhHH
Q 005943 325 ALKACINLLNFNSRF--ALQVHGLIVTSGYELDYIVGSNLIDLYAR----LG----NVKSALELFHRLPK---KDVVAWS 391 (668)
Q Consensus 325 ll~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~---~~~~~~~ 391 (668)
+..-.-..+...... ....-.-.....+..++..|..+...|.+ ++ +...|...++...+ .+..+|+
T Consensus 742 l~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~Wn 821 (1238)
T KOG1127|consen 742 LSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWN 821 (1238)
T ss_pred HHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHH
Confidence 322222222221111 00000011111122234444444444333 22 22345555554432 4667777
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005943 392 GLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG 471 (668)
Q Consensus 392 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (668)
.|--. ...|++.-+...|-+-.... +....+|..+--.|....+++.|...|...+... +.+...+--........|
T Consensus 822 aLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 822 ALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred HHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHH
Confidence 76555 44566666666665544332 3445567777777888888999998888776553 233333332222333456
Q ss_pred ChHHHHHHhccCC-----C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHhh
Q 005943 472 EIDDGLALFKFMP-----E---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS---------RLKPNEITFLGVLSACR 534 (668)
Q Consensus 472 ~~~~A~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------g~~p~~~~~~~ll~~~~ 534 (668)
+.-++..+|..-. . ++..-|-+.......+|++++-+...+++-.. |.+-....|........
T Consensus 899 ~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlE 978 (1238)
T KOG1127|consen 899 RIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLE 978 (1238)
T ss_pred HHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHH
Confidence 6667777766521 1 34444444444455666655544433333221 22333446666666666
Q ss_pred cCCCHHHHHHHHHhcccccCCCCChhHHH----HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEPHLEHYY----CMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 610 (668)
+.+.+..|.+...+...-...+.+...|+ .+.+.+...|.++.|..-+.......+..+...-+.. .-.++++++
T Consensus 979 hL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~s 1057 (1238)
T KOG1127|consen 979 HLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSS 1057 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHH
Confidence 66666666665555432112233444444 3345566667777776666555444444433333333 334578888
Q ss_pred HHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 611 SIIAEQLLATSPEDP---SKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
.+.|++++.+..++. .....++......+..+.|+..+-+....
T Consensus 1058 l~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1058 LEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred HHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 888888877543332 33444555555666777777766555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9e-06 Score=75.72 Aligned_cols=297 Identities=10% Similarity=-0.015 Sum_probs=202.0
Q ss_pred CCCccchHHHHHHHHHh--cCChHHHHHHHccCC-----CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHH
Q 005943 352 YELDYIVGSNLIDLYAR--LGNVKSALELFHRLP-----KKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFI 424 (668)
Q Consensus 352 ~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 424 (668)
++|........+.+++. .++...|...+-.+. ..|+.....+...+...|+..+|+..|++.... .|...+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh
Confidence 34444444444555444 344444444333222 247788889999999999999999999987643 333221
Q ss_pred -HHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---CHhHHHHHHHHHHh
Q 005943 425 -ISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER---DVVSWTGIIVGCGQ 500 (668)
Q Consensus 425 -~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~ 500 (668)
.....-.+...|+.+....+...+.... ..+...|-.-........+++.|+.+-++..+. ++..|-.-...+..
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA 346 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence 1111223356677777777766665432 112222222233344567888898888877753 44455555567889
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHH-HHhh-hcCChHH
Q 005943 501 NGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMV-DLLG-QAGCFDD 577 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~ 577 (668)
.|+.++|.-.|+.... +.| +..+|..++.+|...|...+|.-.-....+ -+..+..+...+. .++. ...--++
T Consensus 347 ~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred ccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHH
Confidence 9999999999999887 465 456999999999999999998877666553 2333445544442 2222 2223578
Q ss_pred HHHHHHhC-CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 578 AEQLIAEM-PFKPDK-TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 578 A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
|.+++++. ...|+- ...+.+...|...|..+.++.++++.+...|++ .....|++++...+.+.+|...+......+
T Consensus 423 AKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 423 AKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999877 667764 355666677889999999999999999999885 688999999999999999999998877665
Q ss_pred C
Q 005943 656 E 656 (668)
Q Consensus 656 ~ 656 (668)
+
T Consensus 502 P 502 (564)
T KOG1174|consen 502 P 502 (564)
T ss_pred c
Confidence 5
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-07 Score=86.92 Aligned_cols=217 Identities=13% Similarity=0.010 Sum_probs=146.1
Q ss_pred cchHhHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHH
Q 005943 436 ASLRRGKQVHAFCVKRG-FEKE--DITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIA 509 (668)
Q Consensus 436 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 509 (668)
+..+.+..-+.++.... ..|+ ...|..+...|.+.|+.+.|...|++..+ | +...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555432 2222 34567777788889999999988887764 3 56788888899999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--C
Q 005943 510 YFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--P 586 (668)
Q Consensus 510 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 586 (668)
.|++..+ +.|+ ..++..+..++...|++++|.+.+++..+ ..|+..........+...++.++|.+.|++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999887 4565 45777788888889999999999988874 3565332222233345567889999988654 2
Q ss_pred CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CC
Q 005943 587 FKPDKTIWASMLKACETHNNTKLVSIIAEQLL-------ATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE-KK 658 (668)
Q Consensus 587 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~ 658 (668)
..|+. |. ........|+...+ +.++.+. +..|....+|..++.++.+.|++++|+..+++..+.++ .+
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 22332 22 12222234444333 2334443 34556677899999999999999999999999888776 54
Q ss_pred Cce
Q 005943 659 AGM 661 (668)
Q Consensus 659 ~~~ 661 (668)
+.+
T Consensus 271 ~e~ 273 (296)
T PRK11189 271 VEH 273 (296)
T ss_pred HHH
Confidence 443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-07 Score=94.72 Aligned_cols=235 Identities=16% Similarity=0.168 Sum_probs=151.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHccCCCC----------Chh-hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHH
Q 005943 357 IVGSNLIDLYARLGNVKSALELFHRLPKK----------DVV-AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFII 425 (668)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 425 (668)
.+...+...|...|+++.|+.+++...+. .+. ..+.+...|...+++.+|..+|+++..-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 34444667777777777777776654321 111 1223445566666666666666665421
Q ss_pred HHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC----------CCHh-HHHHH
Q 005943 426 SSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE----------RDVV-SWTGI 494 (668)
Q Consensus 426 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~l 494 (668)
++.......+.-..+++.|..+|.+.|++++|...+++..+ +.+. .++.+
T Consensus 271 -------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 271 -------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred -------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 11111111122234556666677777777776666554431 2222 35666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhhcCCCHHHHHHHHHhccccc----C-CCC-ChhH
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQS---RLKPNE----ITFLGVLSACRHAGLVEEAWTIFTSMKPEY----G-LEP-HLEH 561 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~~~ 561 (668)
...+...+++++|..++++..+. -..++. .+++.+...|...|++++|.++++.+.... + ..+ ....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 77788888888888888776553 112222 378889999999999999999888876542 1 122 2456
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEM--------PFKPDK-TIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
++.|...|.+.+++.+|.++|.+. +..|+. .+|..|...|.+.|+++.|.++.+.+..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 778888898889888888888765 234443 4789999999999999999999998875
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.7e-06 Score=81.71 Aligned_cols=398 Identities=13% Similarity=0.024 Sum_probs=220.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHc-CCCHHHHHHHHHHhhhh--
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSN-CNVLCEARKLFDQYSSW-- 276 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-- 276 (668)
..+.|..+-..|...|.-..|..+++.-..+...+ +++..+-.....|.+ .+.++++..+-.++...
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p----------s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~ 425 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP----------SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLG 425 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC----------CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhh
Confidence 45667777788888888888888888766433111 144455555555555 46666666665555431
Q ss_pred hhcCCCCeeeHHHHHHHHHhC-----------CChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhccccchHHHHHHH
Q 005943 277 AASAYGNVALWNSMISGYVLN-----------EQNEEAITLLSHIHSSG-MCIDSYTFTSALKACINLLNFNSRFALQVH 344 (668)
Q Consensus 277 ~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~ 344 (668)
+.........|-.+.-+|... ....++++.+++..+.+ -.|+...|..+ -++..+++ ..|....
T Consensus 426 ~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l--~sAl~~~ 501 (799)
T KOG4162|consen 426 GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQL--TSALDYA 501 (799)
T ss_pred hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhH--HHHHHHH
Confidence 111122333444444444321 12345666666666543 23333333322 23333444 5566666
Q ss_pred HHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHc--CCC
Q 005943 345 GLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINS--NQD 419 (668)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~ 419 (668)
.+..+.+-..+...|..|.-.+...+++.+|+++.+...+. |-.....-+..-..-++.++++.....+..- ...
T Consensus 502 ~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~ 581 (799)
T KOG4162|consen 502 REALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEY 581 (799)
T ss_pred HHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhh
Confidence 66665555555556665555555666666666665544321 1111111111222244555555444443220 000
Q ss_pred CcHHHHHHHHHHhccccchHhHHHHHHHHHH--hCCCCchhHHHHH---HHHHHhcCChHHHHHHhccCCCCC------H
Q 005943 420 VNQFIISSVLKVCSCLASLRRGKQVHAFCVK--RGFEKEDITLTSL---IDMYLKCGEIDDGLALFKFMPERD------V 488 (668)
Q Consensus 420 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~------~ 488 (668)
+-. ..++-....+....+.- ....-.+.++..+ +..-.+.-..+..+..+.....|+ .
T Consensus 582 ~~q-----------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~ 650 (799)
T KOG4162|consen 582 GVQ-----------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQ 650 (799)
T ss_pred hHh-----------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHH
Confidence 000 00000000011100000 0001112233222 221112222222222222223343 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVD 567 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 567 (668)
..|......+.+.+..++|...+.+.... .+-....|......+...|.+++|.+.|.... .+.|+ +....++..
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 34556667788888999998888777764 23344567777778888999999999998887 67885 788999999
Q ss_pred HhhhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 568 LLGQAGCFDDAEQ--LIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 568 ~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
++.+.|+..-|.. ++.++ ...| +...|..+...+.+.|+.+.|-+.|..+.++.+.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998777776 88777 4444 7789999999999999999999999999998877764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.00012 Score=72.65 Aligned_cols=587 Identities=11% Similarity=0.065 Sum_probs=331.9
Q ss_pred HHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCCh---hHHHHHHHHHhcC
Q 005943 6 IVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNI---VSWTTMVTAYTSN 82 (668)
Q Consensus 6 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~ 82 (668)
|..++.. -..+..+..+.+.+.+++ +.+-...+.....-.+...|+.++|......-.+.|+ +.|..+.-.+-..
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 3344433 345567777777777776 3333444555555556678899999988887766444 4577777777778
Q ss_pred CChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHH
Q 005943 83 KRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKL 160 (668)
Q Consensus 83 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~ 160 (668)
+++++|++.|......+ + .|...+.-+.-.-+..|+++..........+..+ .....|..+..++.-.|+.. -.+
T Consensus 89 K~Y~eaiKcy~nAl~~~-~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-K-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988877 2 3455666665556677778777777766665422 12233444444444444443 222
Q ss_pred HhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhC-CCCChhhHHHHH------HHHHhCCChHHHHHHhhccCCCCcc
Q 005943 161 FDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRG-FEKEDVTLTSLI------DMYLKCGEIDDGLALFNFMPERDVV 233 (668)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~ 233 (668)
.++.. +.- -.|+...|.... ....+.|..+.|.+.+..-...-..
T Consensus 166 l~ef~----------------------------~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D 217 (700)
T KOG1156|consen 166 LEEFE----------------------------KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD 217 (700)
T ss_pred HHHHH----------------------------HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH
Confidence 22222 222 235555554333 3456678888888887765522211
Q ss_pred hHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHH-hC-CChhHHHHHHHHHH
Q 005943 234 SWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYV-LN-EQNEEAITLLSHIH 311 (668)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~-~~~~~a~~~~~~m~ 311 (668)
....-..-...+.+.+++++|..++..+.. ..||..-|+..+..+. +- +..+....+|....
T Consensus 218 ------------kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~----rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 218 ------------KLAFEETKADLLMKLGQLEEAVKVYRRLLE----RNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred ------------HHHHhhhHHHHHHHHhhHHhHHHHHHHHHh----hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 223344556778889999999999999976 6677666666554443 33 33333336666554
Q ss_pred hC---CCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHH----HHHHHccCC-
Q 005943 312 SS---GMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKS----ALELFHRLP- 383 (668)
Q Consensus 312 ~~---g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~- 383 (668)
+. ...|-....+.+ . ..++. +....++..+.+.|+++--.. +...|-.....+- +..+...+.
T Consensus 282 ~~y~r~e~p~Rlplsvl-~----~eel~-~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 282 EKYPRHECPRRLPLSVL-N----GEELK-EIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred hcCcccccchhccHHHh-C----cchhH-HHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 42 111211111111 0 01110 445556666666666543222 2222211111110 111111111
Q ss_pred -------------CCChh--hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhccccchHhHHHHHHH
Q 005943 384 -------------KKDVV--AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQF-IISSVLKVCSCLASLRRGKQVHAF 447 (668)
Q Consensus 384 -------------~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 447 (668)
.|... ++.-++..+-+.|+++.|...++..++. .|+.. .|..=.+.+...|.++.|..++++
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~e 430 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDE 430 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 12223 3445678888899999999998877643 44433 344445778888999999999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC--Hh--------HHHHH--HHHHHhcCChHHHHHHHHHHH
Q 005943 448 CVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERD--VV--------SWTGI--IVGCGQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--------~~~~l--~~~~~~~~~~~~a~~~~~~m~ 515 (668)
..+.. .+|...-.--.....+..+.++|.++.....+.+ .. .|-.+ ..+|.+.|++..|++-|....
T Consensus 431 a~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 431 AQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 88776 4555555466777788899999988877766422 11 23222 346777777777776665554
Q ss_pred HC--CC---CCCHHH----------HHHHHHHhhcCCC-------HHHHHHHHHhcccccCCC-CChhHHHH----HHHH
Q 005943 516 QS--RL---KPNEIT----------FLGVLSACRHAGL-------VEEAWTIFTSMKPEYGLE-PHLEHYYC----MVDL 568 (668)
Q Consensus 516 ~~--g~---~p~~~~----------~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~-p~~~~~~~----l~~~ 568 (668)
.. .+ +-|-.| |.-|+.-.-...+ ...|+++|=.|....... +....... .-..
T Consensus 510 k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~ 589 (700)
T KOG1156|consen 510 KHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKI 589 (700)
T ss_pred HHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHH
Confidence 32 01 222223 2223322211111 235677777776432000 11111111 1111
Q ss_pred hhhcC-ChHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 569 LGQAG-CFDDAEQLIAEM--------------PFKPDKTIWASMLKACETHNN-TKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 569 ~~~~g-~~~~A~~~~~~~--------------~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
..++. +..+|.+.-+.+ +..||.. -+...+.+..+ .++|..++.......+.+..+|..-.
T Consensus 590 ~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ 666 (700)
T KOG1156|consen 590 KKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSF 666 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhH
Confidence 11111 111222221111 1234444 23333445544 56788999988889999999999999
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 NVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+|.+.|.+.-+.+.++.+.....
T Consensus 667 ely~rk~k~~l~~~~~~~~~~~~~ 690 (700)
T KOG1156|consen 667 ELYYRKGKFLLALACLNNAEGIHG 690 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999999988877655
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-07 Score=77.83 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=128.1
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcC
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHA 536 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 536 (668)
..|.-.|...|++..|..-+++..+ | +..+|..+...|.+.|+.+.|.+.|++..+ +.|+. ...|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhC
Confidence 3455567777777777777776664 3 234666677777777777777777777776 34443 3556666666777
Q ss_pred CCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIA 614 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 614 (668)
|.+++|...|++...+....--..+|..+.-+..+.|+++.|.+.|++. ...| ...+...+.......|++..|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 7777777777777765333334567777777777777777777777766 2223 3445566666667777777777777
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 615 EQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 615 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
++.....+.+...+...+++-...||.+.+.++=..+...
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777766666667777777777777777777766665544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-07 Score=86.25 Aligned_cols=219 Identities=14% Similarity=0.102 Sum_probs=144.5
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhccccchHh
Q 005943 362 LIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDV-NQFIISSVLKVCSCLASLRR 440 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 440 (668)
+.+++...|+.+.++.-+..-..|.......+...+...++.+.++.-+++.......+ +..........+...|+++.
T Consensus 41 ~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~ 120 (290)
T PF04733_consen 41 QYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEE 120 (290)
T ss_dssp HHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHH
Confidence 55667777887776665555555555555555444433344555555555544444332 33333333456677899999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC-HhHHHHHHHHH----HhcCChHHHHHHHHHHH
Q 005943 441 GKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERD-VVSWTGIIVGC----GQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 441 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~----~~~~~~~~a~~~~~~m~ 515 (668)
|.+++... .+.......+..|.+.++++.|.+.++.|.+-+ -.+...+..++ .-.+.+.+|..+|+++.
T Consensus 121 AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~ 194 (290)
T PF04733_consen 121 ALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELS 194 (290)
T ss_dssp HHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 98887642 356667778999999999999999999988632 22233343333 23347999999999987
Q ss_pred HCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCCh-HHHHHHHHhCC-CCCC
Q 005943 516 QSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCF-DDAEQLIAEMP-FKPD 590 (668)
Q Consensus 516 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~p~ 590 (668)
+. ..++..+.+.+..++...|++++|.+++++... ..| +..+...++-+....|+. +.+.+++..+. ..|+
T Consensus 195 ~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 195 DK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp CC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred hc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 75 578888999999999999999999999999874 345 467777788887888887 67788998883 3454
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4e-05 Score=68.34 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCC-CCchHHHHHHHHhccCChHHHHHHHHHHHH
Q 005943 72 WTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEP-NGFMYSAVLKACSLSGDLDLGRLIHERITR 133 (668)
Q Consensus 72 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 133 (668)
+++.+..+.+..++.+|++++..-.+.. | +....+.|..+|....++..|-.+++++-.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~---p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q 72 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS---PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ 72 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666666666666665554 3 344445555555666666666666666544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-05 Score=72.70 Aligned_cols=310 Identities=14% Similarity=0.109 Sum_probs=181.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHH---HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005943 252 ALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMI---SGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKA 328 (668)
Q Consensus 252 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 328 (668)
-+.+.+...|++..|+.-|... +..|+..|.++- ..|...|+..-|+.=|....+ ++||-..-
T Consensus 43 ElGk~lla~~Q~sDALt~yHaA------ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~A------ 108 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAA------VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAA------ 108 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH------HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHH------
Confidence 4555566667777777777766 444555555543 345666666666665555554 34442211
Q ss_pred HHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHH
Q 005943 329 CINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYL 408 (668)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 408 (668)
-.. -...+.+.|.+++|+.-|+.+.+.++.- +....++.+.--.++-..
T Consensus 109 RiQ------------------------------Rg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~ 157 (504)
T KOG0624|consen 109 RIQ------------------------------RGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV 157 (504)
T ss_pred HHH------------------------------hchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH
Confidence 111 1223567788888888777766532210 001111111111111111
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC---C
Q 005943 409 LFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP---E 485 (668)
Q Consensus 409 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~ 485 (668)
+. ..+..+...|+...|......+.+.. +.+...+..-..+|...|++..|+.-+.... .
T Consensus 158 l~----------------~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 158 LV----------------QQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred HH----------------HHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 11 12223344555666666666555543 5566777777778888888888766555443 3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH---HHH---------HHHhhcCCCHHHHHHHHHhcccc
Q 005943 486 RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TF---LGV---------LSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 486 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~---~~l---------l~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
.+...+--+-..+.+.|+.+.++...++.++ +.||.. +| -.+ +......++|-++.+..+...+.
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ 298 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN 298 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 4566666666677777888888777777776 456653 22 111 11234566777777777666632
Q ss_pred cCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 553 YGLEPH-----LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 553 ~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
.|. ...+..+..++...|++.+|+..-.+. .+.|| +.++..-..+|.-..+++.|+.-|+.+.+.++++.
T Consensus 299 ---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 299 ---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred ---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 333 345566677778888888888777665 45554 66777777788888888888888888888887765
Q ss_pred hhH
Q 005943 626 SKY 628 (668)
Q Consensus 626 ~~~ 628 (668)
.+-
T Consensus 376 ~~r 378 (504)
T KOG0624|consen 376 RAR 378 (504)
T ss_pred HHH
Confidence 443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.4e-06 Score=74.71 Aligned_cols=289 Identities=12% Similarity=0.090 Sum_probs=206.7
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHH---HHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHH-HHHHHhccccc
Q 005943 362 LIDLYARLGNVKSALELFHRLPKKDVVAWSGLI---MGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS-SVLKVCSCLAS 437 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~ 437 (668)
+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+...++. +||-..-. .--..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 555666778888888888888887777776664 4678888888888877777654 45543221 12235678888
Q ss_pred hHhHHHHHHHHHHhCCCCc--hh------------HHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHh
Q 005943 438 LRRGKQVHAFCVKRGFEKE--DI------------TLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQ 500 (668)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 500 (668)
++.|..-|+.+.+...... .. .....+..+.-.|+...|+.....+.+ -|...|..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 9999888888876542111 11 112233445567888999998888775 477788888999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhH----HHHH---------HH
Q 005943 501 NGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEH----YYCM---------VD 567 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~l---------~~ 567 (668)
.|+...|+.-++...+.. .-|..++--+-..+...|+.+.++..+++.. .+.||... |..| +.
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777642 3344555566677888999999999888888 67887432 2111 11
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCCHH-----HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 005943 568 LLGQAGCFDDAEQLIAEM-PFKPDKT-----IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMW 641 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 641 (668)
.....++|.++++-.++. ...|... .+..+-..+...+++.+|++...++++.+|+|..++..-+.+|.--.+|
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 233445666666666554 4455522 2333444456789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCC
Q 005943 642 DSLSKVRKAGKKLGE 656 (668)
Q Consensus 642 ~~a~~~~~~~~~~~~ 656 (668)
|.|+.-++...+.+.
T Consensus 358 D~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 358 DDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999999887665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.4e-06 Score=80.83 Aligned_cols=258 Identities=11% Similarity=0.003 Sum_probs=159.7
Q ss_pred HHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHH---HHHHhccccchHhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhc
Q 005943 395 MGCTKHGLNSLAYLLFRDMINSNQDVNQFIISS---VLKVCSCLASLRRGKQVHAFCVKRGFEKE-DITLTSLIDMYLKC 470 (668)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 470 (668)
..+...|++++|.+.+++..+.. +.+...+.. ........+....+.+.+.. ..+..|+ ......+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 34567789999999999887763 223333331 11122223445555555443 1122233 33444566778889
Q ss_pred CChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhcCCCHHHHHH
Q 005943 471 GEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL-KPNE--ITFLGVLSACRHAGLVEEAWT 544 (668)
Q Consensus 471 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~ 544 (668)
|++++|...+++..+ | +...+..+...+...|++++|...+++.....- .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999998764 3 456778888899999999999999998887521 1232 245567788899999999999
Q ss_pred HHHhcccccCCCCChhHH-H--HHHHHhhhcCChHHHHHH---HHhC-CCCC-CHHHHH--HHHHHHHhhCCHHHHHHHH
Q 005943 545 IFTSMKPEYGLEPHLEHY-Y--CMVDLLGQAGCFDDAEQL---IAEM-PFKP-DKTIWA--SMLKACETHNNTKLVSIIA 614 (668)
Q Consensus 545 ~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~ 614 (668)
++++........+..... . .++..+...|....+.+. .... ...| ....+. ....++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999975321111222111 1 223333444433322222 1111 1101 112222 4555677889999999999
Q ss_pred HHHHhcCCC---------CchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 615 EQLLATSPE---------DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 615 ~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+.+...... ........+.++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 998773211 34455667778889999999999998887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-05 Score=79.32 Aligned_cols=395 Identities=14% Similarity=0.101 Sum_probs=217.1
Q ss_pred CChhHHHHHHHH--HhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhh
Q 005943 67 KNIVSWTTMVTA--YTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMN 144 (668)
Q Consensus 67 ~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 144 (668)
-|..+-..++.. |..-|+.+.|++-.+-++ +...|..+.+.|.+.+++|-|.-++..|....-.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga------- 789 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA------- 789 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH-------
Confidence 477777777764 677899999988776654 3457999999999999999999998888753210
Q ss_pred HHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHh
Q 005943 145 TLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALF 224 (668)
Q Consensus 145 ~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 224 (668)
++ ++..++. |+ .+=....-.....|.+++|..+|
T Consensus 790 -------------RA-----------------------------lR~a~q~---~~-e~eakvAvLAieLgMlEeA~~lY 823 (1416)
T KOG3617|consen 790 -------------RA-----------------------------LRRAQQN---GE-EDEAKVAVLAIELGMLEEALILY 823 (1416)
T ss_pred -------------HH-----------------------------HHHHHhC---Cc-chhhHHHHHHHHHhhHHHHHHHH
Confidence 00 0111111 11 11122222334566677777777
Q ss_pred hccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHH
Q 005943 225 NFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAI 304 (668)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 304 (668)
++-+.-| .|=..|-..|.+++|.++-+.-.. +. =..||..-...+-..++.+.|+
T Consensus 824 r~ckR~D--------------------LlNKlyQs~g~w~eA~eiAE~~DR----iH-Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 824 RQCKRYD--------------------LLNKLYQSQGMWSEAFEIAETKDR----IH-LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHHHHH--------------------HHHHHHHhcccHHHHHHHHhhccc----ee-hhhhHHHHHHHHHhhccHHHHH
Confidence 6554333 233445666777777666554311 11 1224444455555566667776
Q ss_pred HHHHHHHhC----------C---------CCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHH
Q 005943 305 TLLSHIHSS----------G---------MCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDL 365 (668)
Q Consensus 305 ~~~~~m~~~----------g---------~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (668)
+.|++.-.. . -.-|...|.-.-.-+-..|+. +.|..++....+ |-+++..
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem--daAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM--DAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccch--HHHHHHHHHhhh---------hhhheee
Confidence 666653110 0 001222222222222333444 444444433322 2223344
Q ss_pred HHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc---------
Q 005943 366 YARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA--------- 436 (668)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--------- 436 (668)
.|-.|+.++|-++-++ ..|..+...|.+.|-..|++.+|...|.+.. +|...|+.|-..+
T Consensus 948 ~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred EeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHH
Confidence 4444555555554433 2366677788888989999999998887653 4445555443332
Q ss_pred ------chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--------------CCHhHHHHHHH
Q 005943 437 ------SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--------------RDVVSWTGIIV 496 (668)
Q Consensus 437 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~~~~~~~l~~ 496 (668)
+.-.|-++|++. |. -....+..|-+.|.+.+|+++--+-.+ .|+...+.-..
T Consensus 1017 l~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred hhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 222222333321 11 122334556777777777665332221 36667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhc
Q 005943 497 GCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQA 572 (668)
Q Consensus 497 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~ 572 (668)
-++.+.++++|..++-..++ |.-.+..| +..+..-..++-+.|.....-.|+ ......+.+.+.++
T Consensus 1089 FF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 78888889998888766554 23333333 333444444444555433222333 34566777888888
Q ss_pred CChHHHHHHHHhCC
Q 005943 573 GCFDDAEQLIAEMP 586 (668)
Q Consensus 573 g~~~~A~~~~~~~~ 586 (668)
|.+..|.+-|..++
T Consensus 1159 G~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQAG 1172 (1416)
T ss_pred cchHHHHHHHhhhh
Confidence 88888777776664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-05 Score=74.48 Aligned_cols=237 Identities=11% Similarity=0.015 Sum_probs=147.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCC------chhHHHHH
Q 005943 390 WSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEK------EDITLTSL 463 (668)
Q Consensus 390 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l 463 (668)
...+..+..+..++..|++.+....+.. -+..-++..-.++...|........-....+.|-.. -...+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456666667777888888887776654 333344445556666666666555544444433111 01112223
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEA 542 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 542 (668)
..+|.+.++++.|+..|.+...+... -....+....++++...+...- +.|... -...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 44666667777777777764421100 1112233445555555544443 344432 122235567788999999
Q ss_pred HHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 543 WTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 543 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
...|.++... .| |...|..-.-+|.+.|.+..|++=-+.. ...| ....|.--..++....+++.|.+.|++.++
T Consensus 378 v~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 378 VKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998853 45 6788888999999999998888766655 3344 344455555556667789999999999999
Q ss_pred cCCCCchhHHHHHHHHHhc
Q 005943 620 TSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 620 ~~p~~~~~~~~l~~~~~~~ 638 (668)
.+|.+..+...+.+.+...
T Consensus 455 ~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchhHHHHHHHHHHHHHh
Confidence 9999888888877777653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00046 Score=70.41 Aligned_cols=239 Identities=12% Similarity=0.057 Sum_probs=122.7
Q ss_pred HHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcC--------CCCCCCchHHHHHHHHhccC
Q 005943 48 YADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYG--------SVEPNGFMYSAVLKACSLSG 119 (668)
Q Consensus 48 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~p~~~~~~~ll~~~~~~~ 119 (668)
|..-|+.+.|.+-.+.++ .-..|..|.+.|.+.++.+-|.-.+..|.... ...|+ .+-.-+.-.....|
T Consensus 738 yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 445566666655554442 23446666666666666666655555554311 11122 22223333345667
Q ss_pred ChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCC
Q 005943 120 DLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEK 199 (668)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (668)
-+++|+.++.+-++..+ |=..|-..|.+++++ +.... ..--.
T Consensus 815 MlEeA~~lYr~ckR~DL---------lNKlyQs~g~w~eA~-eiAE~----------------------------~DRiH 856 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYDL---------LNKLYQSQGMWSEAF-EIAET----------------------------KDRIH 856 (1416)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHHHhcccHHHHH-HHHhh----------------------------cccee
Confidence 77777777776665431 222333344444222 00000 00011
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhc------c--cCchhhHHHHHHHHHcCCCHHHHHHHHH
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGC------F--ECSCFTLSALVDMYSNCNVLCEARKLFD 271 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (668)
=..||..-...+-..++++.|++.|++...+....+..+..-. . ..|...|.=....+-..|+.+.|+.++.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 2345666666666778888888888776633222222111110 0 0245555555555566788888888877
Q ss_pred HhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHH
Q 005943 272 QYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGL 346 (668)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 346 (668)
..+. |-.+++..|-.|+.++|-.+-++- -|......+.+.|-..|++ ..|..+|..
T Consensus 937 ~A~D-----------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v--~~Av~FfTr 992 (1416)
T KOG3617|consen 937 SAKD-----------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDV--VKAVKFFTR 992 (1416)
T ss_pred Hhhh-----------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHH--HHHHHHHHH
Confidence 7643 455556666666666666665442 2344444555555555555 555555543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-07 Score=90.46 Aligned_cols=215 Identities=13% Similarity=0.129 Sum_probs=157.0
Q ss_pred cccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHH
Q 005943 434 CLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAY 510 (668)
Q Consensus 434 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~ 510 (668)
+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+.+..+ | |....-.|...|...|.-..|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3445555555555555443 44566666676667777777777777776654 3 556677777778888877788888
Q ss_pred HHHHHHCCCCCCHHHHHHHH-----------HHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHH
Q 005943 511 FQEMIQSRLKPNEITFLGVL-----------SACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAE 579 (668)
Q Consensus 511 ~~~m~~~g~~p~~~~~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 579 (668)
++.-+... |.. ..+. ..+..........++|-++....+..+|..+...|.-.|.-.|.+++|.
T Consensus 376 L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 376 LDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 77765532 111 0000 1112222334455566666555466688899999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 580 QLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 580 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
+.|+.+ ..+| |...||-|...+....+.++|+..|.+++++.|.-..+...|+-.|...|.|++|.+.|=.....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999988 5666 67789999999999999999999999999999999999999999999999999999998776543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-08 Score=59.42 Aligned_cols=34 Identities=44% Similarity=0.720 Sum_probs=32.3
Q ss_pred hCCCCChhhHHHHHHHHHhCCChHHHHHHhhccC
Q 005943 195 RGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMP 228 (668)
Q Consensus 195 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 228 (668)
.|+.||..||++||.+||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999985
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.2e-07 Score=83.16 Aligned_cols=179 Identities=13% Similarity=0.056 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-V---VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI----TF 526 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~ 526 (668)
...+..+...+.+.|+++.|...|+++.. |+ . ..+..+..++...|++++|+..++++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 34444555556666666666666665542 21 1 24445555666666666666666666553 23211 23
Q ss_pred HHHHHHhhcC--------CCHHHHHHHHHhcccccCCCCCh-hHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 005943 527 LGVLSACRHA--------GLVEEAWTIFTSMKPEYGLEPHL-EHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASM 597 (668)
Q Consensus 527 ~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 597 (668)
..+..++... |+++.|.+.++.+... .|+. ..+..+..... .... . ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~---~--------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR---L--------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH---H--------HHHHHHH
Confidence 3333333332 4555555555555532 3332 11111111100 0000 0 0011244
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPED---PSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
...+.+.|+++.|...++++.+..|++ +..+..++.++.+.|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 556788999999999999999987765 4789999999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.7e-07 Score=75.74 Aligned_cols=103 Identities=11% Similarity=-0.041 Sum_probs=50.4
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhC
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHN 605 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~ 605 (668)
+..++...|++++|...|+... ...| +...+..+..++.+.|++++|...|+.. ... .+...+..+..++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3444455555555555555544 2233 3444455555555555555555555544 222 23444444444555555
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 005943 606 NTKLVSIIAEQLLATSPEDPSKYVMLSNV 634 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 634 (668)
++++|+..|+++++..|+++..+...+.+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 55555555555555555555555444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.1e-06 Score=90.41 Aligned_cols=197 Identities=13% Similarity=0.117 Sum_probs=114.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPER--------DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFL 527 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 527 (668)
+...|-..|......++.++|+++.++.... -...|.++++.-...|.-+...++|+++.+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3444555555555666666666666655431 1234555555555555556666666666652 22233456
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHh
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP---DKTIWASMLKACET 603 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~ 603 (668)
.|...|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|.+++.++ ..-| ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 666666666666666666666665444 44556666666666666666666666554 2222 23333444444556
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 604 HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.|+.+.+..+|+..+...|.....|..+++.-.+.|+.+.++.+|+++...++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 66666666666666666666666666666666666666666666666666555
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-06 Score=73.92 Aligned_cols=119 Identities=8% Similarity=0.065 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhhCC--HHHH
Q 005943 536 AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKAC-ETHNN--TKLV 610 (668)
Q Consensus 536 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a 610 (668)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4444555555555442 12234566666666666666666666666655 2333 444455555542 44454 3666
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 611 SIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.++++++++.+|+++.++..++..+.+.|++++|+..++++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6666666666666666666666666666666666666666655544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00051 Score=71.77 Aligned_cols=182 Identities=13% Similarity=0.068 Sum_probs=119.0
Q ss_pred CChhHHHHhhhhcCCCChh---HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHH
Q 005943 52 TSLNDAHKLFDEMARKNIV---SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIH 128 (668)
Q Consensus 52 g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 128 (668)
.+...|...|=+..+.|+. .|..|...|+...+...|...|+...+.+ . -+..........+++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-a-tdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-A-TDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-hhhhhHHHHHHHhhccccHHHHHHHH
Confidence 4477777777666665543 69999999998889999999999999987 2 46778899999999999999999994
Q ss_pred HHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHH
Q 005943 129 ERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLI 208 (668)
Q Consensus 129 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li 208 (668)
-...+.... -...+| |-..-
T Consensus 550 l~~~qka~a-~~~k~n-----------------------------------------------------------W~~rG 569 (1238)
T KOG1127|consen 550 LRAAQKAPA-FACKEN-----------------------------------------------------------WVQRG 569 (1238)
T ss_pred HHHhhhchH-HHHHhh-----------------------------------------------------------hhhcc
Confidence 333332110 000011 11112
Q ss_pred HHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHH
Q 005943 209 DMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWN 288 (668)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 288 (668)
-.|.+.++..+|+.-|+...+.++. |...|..++.+|.+.|.+..|.++|.+... ..|+. .|.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPk------------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~----LrP~s-~y~ 632 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPK------------DYNLWLGLGEAYPESGRYSHALKVFTKASL----LRPLS-KYG 632 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCch------------hHHHHHHHHHHHHhcCceehHHHhhhhhHh----cCcHh-HHH
Confidence 2345666777777777777655554 555677777777777777777777766643 33432 122
Q ss_pred HH--HHHHHhCCChhHHHHHHHHHHh
Q 005943 289 SM--ISGYVLNEQNEEAITLLSHIHS 312 (668)
Q Consensus 289 ~l--i~~~~~~~~~~~a~~~~~~m~~ 312 (668)
.. ....+..|.+.++++.+.....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 21 1224556777777777766543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-06 Score=72.53 Aligned_cols=111 Identities=11% Similarity=0.039 Sum_probs=92.5
Q ss_pred HHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 544 TIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 544 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
.++++.. ...|+. +..+...+...|++++|...|+.. ...| +...|..+..++.+.|++++|...|+++.+++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455555 335553 556788889999999999999987 3344 77788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 622 PEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 622 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
|+++..+..++.++...|++++|+..++...+..+.++
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999988777443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.2e-05 Score=84.78 Aligned_cols=295 Identities=12% Similarity=0.018 Sum_probs=169.5
Q ss_pred HHHHHHHhcCChHHHHHHHccCCC----CC---h---h--hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcH----HH
Q 005943 361 NLIDLYARLGNVKSALELFHRLPK----KD---V---V--AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQ----FI 424 (668)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~----~~---~---~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~ 424 (668)
.....+...|+++++...+..... .+ . . ....+...+...|+++.|...+++....-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 344455566777777776654321 11 1 1 1112223455678888888888776653211121 22
Q ss_pred HHHHHHHhccccchHhHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCChHHHHHHhccCCC-------C----CH
Q 005943 425 ISSVLKVCSCLASLRRGKQVHAFCVKR----GFE-KEDITLTSLIDMYLKCGEIDDGLALFKFMPE-------R----DV 488 (668)
Q Consensus 425 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~ 488 (668)
...+...+...|+++.|...+...... |.. .....+..+...+...|+++.|...+++... + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 334444556678888888877766543 111 1123344556667778888888777665432 1 11
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHH--
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQS--RLKPN--EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHY-- 562 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-- 562 (668)
..+..+...+...|++++|...+++.... ...+. ...+..+.......|++++|...+++...-.........+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 23344455566678888888888776553 11122 2234445566777888888888777764311111110101
Q ss_pred ---HHHHHHhhhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCCchh
Q 005943 563 ---YCMVDLLGQAGCFDDAEQLIAEMPFK--PDK----TIWASMLKACETHNNTKLVSIIAEQLLATS------PEDPSK 627 (668)
Q Consensus 563 ---~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~ 627 (668)
...+..+...|+.+.|.+.+...... ... ..+..+..++...|+.++|...++++.... +....+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 11223445578888888887665311 111 113345556777888888888888877632 112345
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 628 YVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 628 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+..++.++...|+.++|...+.+..+..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6677888888888888888888877643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00015 Score=72.16 Aligned_cols=265 Identities=12% Similarity=0.031 Sum_probs=165.1
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-CCcHHHHH-HHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHH---
Q 005943 388 VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQ-DVNQFIIS-SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTS--- 462 (668)
Q Consensus 388 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 462 (668)
..|..+...+...|+.+.+...+........ .++..... .....+...|+++++..+++...+.. +.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 3455556666667777776666666544322 23332222 22234466789999999999888763 444444432
Q ss_pred HHHHHHhcCChHHHHHHhccCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE--RD-VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLV 539 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 539 (668)
........+..+.+.+.+..... |+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 12222234566666666655322 22 3344556678889999999999999999963 33456778888899999999
Q ss_pred HHHHHHHHhcccccCCCCCh--hHHHHHHHHhhhcCChHHHHHHHHhCC-CCC--C-HHHH-H--HHHHHHHhhCCHHHH
Q 005943 540 EEAWTIFTSMKPEYGLEPHL--EHYYCMVDLLGQAGCFDDAEQLIAEMP-FKP--D-KTIW-A--SMLKACETHNNTKLV 610 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p--~-~~~~-~--~l~~~~~~~~~~~~a 610 (668)
++|...+++........|+. ..|..+...+...|++++|..++++.. ..| . .... + .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999987531112332 346678899999999999999999862 223 1 1111 1 222223344443333
Q ss_pred HHHHHHHHh----cCCC--CchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 611 SIIAEQLLA----TSPE--DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 611 ~~~~~~~~~----~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
.+. +.+.. ..|. ....-...+.++...|+.++|...++.+....
T Consensus 245 ~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 245 DRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 332 22221 1122 12223367778899999999999999987643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.7e-08 Score=56.67 Aligned_cols=34 Identities=35% Similarity=0.554 Sum_probs=27.9
Q ss_pred hcCCCCccchHHHHHHHHcCCChhHHHHhhhhcC
Q 005943 32 YGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMA 65 (668)
Q Consensus 32 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 65 (668)
.|+.||..+|+.||..|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.2e-06 Score=83.73 Aligned_cols=217 Identities=17% Similarity=0.196 Sum_probs=152.6
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005943 351 GYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLK 430 (668)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 430 (668)
+++|-...-..+...+.+.|-...|..+|+++ ..|...+.+|+..|+..+|..+..+..+ -+|++..|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34566666677888889999999999998875 4677888899999999999998888776 4677888888877
Q ss_pred HhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---CHhHHHHHHHHHHhcCChHHH
Q 005943 431 VCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER---DVVSWTGIIVGCGQNGRAKEA 507 (668)
Q Consensus 431 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 507 (668)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.+++..|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 777777777777776654322 1122222233467777777777755432 244666666777777777777
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 508 IAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 508 ~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
...|..-.. +.||.. .|+.+-.+|.+.++..+|...+++..+- + .-+...|...+-...+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 777777666 466543 6777777777777777777777777632 3 344556666677777777777777777766
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=84.91 Aligned_cols=129 Identities=9% Similarity=0.041 Sum_probs=61.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCM 565 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 565 (668)
+..+..|.....+.|++++|+.+++...+ +.|+.. ....+..++.+.+.+++|...+++... ..|+ ......+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHH
Confidence 44444455555555555555555555555 344432 334444455555555555555555542 2332 3344444
Q ss_pred HHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 566 VDLLGQAGCFDDAEQLIAEMP-FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
..++.+.|++++|.++|+++- ..| +...+..+..++...|+.++|...|+++.+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 455555555555555555541 122 23444444444555555555555555555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-05 Score=70.17 Aligned_cols=154 Identities=13% Similarity=0.102 Sum_probs=113.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh
Q 005943 492 TGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ 571 (668)
Q Consensus 492 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 571 (668)
..+-..+...|+-+....+....... -.-+.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 45566677777777777776664432 123334455577778888888888888888873 555678888888888888
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 572 AGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 572 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
.|++++|..-+.+. .+.| +....+.+...+.-.|+.+.|..++.......+.+..+-..|+.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888777666 3333 55567778878888888888888888888888878888888888888888888887764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00016 Score=70.33 Aligned_cols=101 Identities=17% Similarity=0.081 Sum_probs=73.0
Q ss_pred HhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC--CC-hhHHHHHHHHHhcCCChhhH
Q 005943 12 HCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR--KN-IVSWTTMVTAYTSNKRPNWA 88 (668)
Q Consensus 12 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a 88 (668)
+....|+++.|.+.|...+... +++-..|..-..+|+..|++.+|++=-.+-.+ |+ ...|+....++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 3456788899999988888766 44677788888888888888888775554443 22 33688888888888899999
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHH
Q 005943 89 IRLYNHMLEYGSVEPNGFMYSAVLKAC 115 (668)
Q Consensus 89 ~~~~~~m~~~~~~~p~~~~~~~ll~~~ 115 (668)
+..|.+-++.. + .+...++.+..+.
T Consensus 90 ~~ay~~GL~~d-~-~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKD-P-SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcC-C-chHHHHHhHHHhh
Confidence 98888888776 2 2334555555555
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.3e-06 Score=82.51 Aligned_cols=210 Identities=10% Similarity=0.003 Sum_probs=140.5
Q ss_pred HHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC--CCCHhHHHHHHHHHHhcCChH
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP--ERDVVSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 505 (668)
+...+...|-...|..+++++ ..+..++.+|+..|+..+|..+..+-. +|++..|..+........-++
T Consensus 404 laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 334444555555566665543 345556777777777777766665444 356666766666666666667
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
+|.++.+..... .-..+.......++++++.+.|+.-. .+.| -..+|-.+.-+..+.+++..|.+.|..
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 777666554332 11112222334677777777777665 3334 466777777777888888888887776
Q ss_pred C-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 585 M-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 585 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
. ...| +...||.+-.+|.+.++-.+|...++++.+-+-.+..+|.+..-+....|.+++|.+.+.++.+...
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 5 4455 4557888888888888888888888888887777777888888888888888888888888876544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.5e-05 Score=72.20 Aligned_cols=187 Identities=10% Similarity=0.071 Sum_probs=121.4
Q ss_pred HHHHhcC-ChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 005943 465 DMYLKCG-EIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGR--AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL 538 (668)
Q Consensus 465 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 538 (668)
.++...| .+++++..++++.+ .+...|+.....+.+.|+ .++++.+++++.+.. +-|..+|.....++...|+
T Consensus 79 ~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 79 LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhh
Confidence 3334444 45667777666553 233445544434444454 256777887887742 2345677777777888888
Q ss_pred HHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhc---CCh----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh----
Q 005943 539 VEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQA---GCF----DDAEQLIAEM-PFKP-DKTIWASMLKACETH---- 604 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---- 604 (668)
++++++.++++.+. .| +...|+....++.+. |.. ++++++..++ ...| |...|+-+...+...
T Consensus 158 ~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 158 WEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred HHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 88888888888743 33 456666665555444 222 4566666444 4445 566777777777663
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC------------------ChhhHHHHHHHHHhcC
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG------------------MWDSLSKVRKAGKKLG 655 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~~~~~~ 655 (668)
+...+|...+.++.+.+|.++.++..|+++|.+.. ..++|.++++.+.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d 303 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVAD 303 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhC
Confidence 34466888889988889999999999999998642 3477888888885433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00043 Score=78.55 Aligned_cols=364 Identities=9% Similarity=-0.045 Sum_probs=216.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCee--eHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005943 252 ALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVA--LWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKAC 329 (668)
Q Consensus 252 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 329 (668)
.....+...|++.+|......... ++.. ............|+++.+..+++.+.......+..........+
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d------~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGD------AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCC------HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 344556667777777766555421 1110 01111223445677777767666542211111222222333444
Q ss_pred HhccccchHHHHHHHHHHHHhCC------CCc--cchHHHHHHHHHhcCChHHHHHHHccCCC----CCh----hhHHHH
Q 005943 330 INLLNFNSRFALQVHGLIVTSGY------ELD--YIVGSNLIDLYARLGNVKSALELFHRLPK----KDV----VAWSGL 393 (668)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l 393 (668)
...++. +.+..........-- .+. ......+...+...|+++.|...+++... .+. ...+.+
T Consensus 420 ~~~g~~--~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 420 QSQHRY--SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHCCCH--HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 556666 777777766544311 111 11122233455678999999888876532 221 234556
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCC---CC--cHHHHHHHHHHhccccchHhHHHHHHHHHHh----CCCC---chhHHH
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQ---DV--NQFIISSVLKVCSCLASLRRGKQVHAFCVKR----GFEK---EDITLT 461 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~ 461 (668)
...+...|+++.|...+++...... .+ ...++..+...+...|+++.|...+++.... +... ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 6677789999999999988764321 11 1234455566778899999999988776543 2211 123344
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCH--HHH--H
Q 005943 462 SLIDMYLKCGEIDDGLALFKFMPE------R--DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR--LKPNE--ITF--L 527 (668)
Q Consensus 462 ~l~~~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~--~~~--~ 527 (668)
.+...+...|++++|...+.+... + ....+..+...+...|+++.|...+++..... ..... ... .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 556667778999999888887642 1 12344456667888999999999998876521 11111 011 1
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCCC---hhHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCC-HHHHHH
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEPH---LEHYYCMVDLLGQAGCFDDAEQLIAEMP-------FKPD-KTIWAS 596 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ 596 (668)
..+..+...|+.+.|..++...... ..... ...+..+..++...|++++|...+++.- ..++ ..+...
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 1223445589999999998776532 11111 1124567788899999999999988761 1121 234556
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+..++.+.|+.++|...+.++.+.....
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 6677889999999999999999965443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-05 Score=69.76 Aligned_cols=154 Identities=11% Similarity=0.092 Sum_probs=116.8
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAW 543 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 543 (668)
+-.|...|+++.+....+.+..|. ..+...++.++++..++...+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877655543332221 01223567788888888877753 456678999999999999999999
Q ss_pred HHHHhcccccCCCC-ChhHHHHHHHHh-hhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 005943 544 TIFTSMKPEYGLEP-HLEHYYCMVDLL-GQAGC--FDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQL 617 (668)
Q Consensus 544 ~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 617 (668)
..|++.. .+.| +...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|+..|+++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988 4456 578888888864 67777 59999999988 4445 6678888888899999999999999999
Q ss_pred HhcCCCCchhHH
Q 005943 618 LATSPEDPSKYV 629 (668)
Q Consensus 618 ~~~~p~~~~~~~ 629 (668)
++..|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999888765543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0027 Score=62.02 Aligned_cols=174 Identities=9% Similarity=0.093 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHhc
Q 005943 403 NSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEK-EDITLTSLIDMYLKCGEIDDGLALFK 481 (668)
Q Consensus 403 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 481 (668)
.+.....+.++...-..--..+|...++...+..-+..|..+|.++++.+..+ .+.++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45555666666554333334567777777778888888999999988887766 77788888887764 67888888888
Q ss_pred cCCC--CCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCCHHHHHHHHHhcccccC--
Q 005943 482 FMPE--RDVV-SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE--ITFLGVLSACRHAGLVEEAWTIFTSMKPEYG-- 554 (668)
Q Consensus 482 ~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 554 (668)
--.+ +|.. --...+.-+...++-..+..+|++....++.|+. ..|..++.--+.-|+...+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 5443 4433 3445667777888888899999999888777765 4788899888889999998888777765433
Q ss_pred CCCChhHHHHHHHHhhhcCChHH
Q 005943 555 LEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 555 ~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
..+....-..+++-|.-.+...-
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccc
Confidence 33333444555666655554443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.2e-05 Score=66.38 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=88.7
Q ss_pred HHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLV 539 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 539 (668)
+-..+.-.|+-+....+...... .|.......+....+.|++..|+..+++.... -++|..+|+.+.-+|.+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 34444455555555555544332 23334445666666677777777777766654 244555666666677777777
Q ss_pred HHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 540 EEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP-FKP-DKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
+.|..-|.+.. .+.| +...++.|.-.|.-.|+++.|..++.... ..+ |...-..+..+....|+++.|+.+...
T Consensus 151 ~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 151 DEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 77776666665 3344 35556666666666677777777666652 122 555556666666666777666665544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.004 Score=60.92 Aligned_cols=398 Identities=12% Similarity=0.129 Sum_probs=226.3
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS 324 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 324 (668)
|...|+.|++-+... .++++.+.++++.. .-| ....|..-|..-....+++.+..+|.+....-+..|.. ..
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~----~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW--~l 91 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVN----VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLW--KL 91 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHH--HH
Confidence 788999999988877 99999999999965 555 56678888999999999999999999988765554443 33
Q ss_pred HHHHHHhc-cccch---HHHHHHHHHHHHhCCCC-ccchHHHHHHH---------HHhcCChHHHHHHHccCCCC-----
Q 005943 325 ALKACINL-LNFNS---RFALQVHGLIVTSGYEL-DYIVGSNLIDL---------YARLGNVKSALELFHRLPKK----- 385 (668)
Q Consensus 325 ll~~~~~~-~~~~~---~~a~~~~~~~~~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~----- 385 (668)
-|.--.+. +.... ..+...--.+.+.|+.+ +..+|+..+.. |....+++...++++++..-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 33322221 22200 11222222344556655 33445554433 33444677788888887642
Q ss_pred -----ChhhHHHHHHH-------HHhcCCcHHHHHHHHHHHH--cCCCCcHHH---------------HHHHHHHhcccc
Q 005943 386 -----DVVAWSGLIMG-------CTKHGLNSLAYLLFRDMIN--SNQDVNQFI---------------ISSVLKVCSCLA 436 (668)
Q Consensus 386 -----~~~~~~~l~~~-------~~~~~~~~~a~~~~~~m~~--~~~~~~~~~---------------~~~ll~~~~~~~ 436 (668)
|-..|..=|.. --+...+..|.++++++.. .|..-...+ |..+|. +.+.+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wEksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HHhcC
Confidence 11222211111 1123345567777777653 232111111 212221 00000
Q ss_pred c---------hHhHHHHHHH-HHHhCCCCchhHHH-----HHHHHHHhcCCh-------HHHHHHhccCCC----CCHhH
Q 005943 437 S---------LRRGKQVHAF-CVKRGFEKEDITLT-----SLIDMYLKCGEI-------DDGLALFKFMPE----RDVVS 490 (668)
Q Consensus 437 ~---------~~~a~~~~~~-~~~~~~~~~~~~~~-----~l~~~~~~~~~~-------~~A~~~~~~~~~----~~~~~ 490 (668)
- .....-++++ +.-.+..|++.... ..-+.+.+.|+. +++..+++.... .+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111111221 11223333332211 111223333333 333444443332 12222
Q ss_pred HHHHHHHHH---hcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHH
Q 005943 491 WTGIIVGCG---QNGRAKEAIAYFQEMIQSR-LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCM 565 (668)
Q Consensus 491 ~~~l~~~~~---~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 565 (668)
|..+..--- .-...+.....++++...- +.| ..+|..++....+...++.|..+|.++.++ +..+ ++.+++++
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHH
Confidence 222221111 1113556666676666542 223 236777778778888888999999999876 6666 67788888
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCC-CchhHHHHHHHHHhcCC
Q 005943 566 VDLLGQAGCFDDAEQLIAEM-PFKPDKT-IWASMLKACETHNNTKLVSIIAEQLLAT--SPE-DPSKYVMLSNVYATLGM 640 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~ 640 (668)
+..|+. ++.+-|.++|+-- ..-+|.. --...+.-+..-++-..+..+|++++.. .|+ ...+|...+..-..-|+
T Consensus 409 mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 409 MEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 887765 7778888888754 3234444 3456666677888888899999998885 222 34578888888888899
Q ss_pred hhhHHHHHHHHHhc
Q 005943 641 WDSLSKVRKAGKKL 654 (668)
Q Consensus 641 ~~~a~~~~~~~~~~ 654 (668)
.+-+.++-+++...
T Consensus 488 L~si~~lekR~~~a 501 (656)
T KOG1914|consen 488 LNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHHHh
Confidence 99888888877654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-05 Score=67.50 Aligned_cols=96 Identities=20% Similarity=0.324 Sum_probs=49.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
....+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++.+..|.++..+..++.+|...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3344444555555555555555544 2122 3344444444555555555555555555555555555555555555555
Q ss_pred CChhhHHHHHHHHHhcCC
Q 005943 639 GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 639 g~~~~a~~~~~~~~~~~~ 656 (668)
|++++|...+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 99 GEPESALKALDLAIEICG 116 (135)
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 555555555555554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00016 Score=63.77 Aligned_cols=245 Identities=11% Similarity=-0.002 Sum_probs=152.3
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEI 473 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (668)
++-+.-.|++..++..-....... -+...-..+-++|...|...... ..+.. |-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccc-ccCChHHHHHHHHHHhhCcchh
Confidence 455566677777766554443221 23333333444555555433221 11111 1133333333333333334443
Q ss_pred HHHH-HHhccCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 005943 474 DDGL-ALFKFMPER----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTS 548 (668)
Q Consensus 474 ~~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 548 (668)
++-. ++.+.+..+ +......-...|+..|++++|++..+... +......=...+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 222233322 22233333456889999999999887622 223333334456678889999999999
Q ss_pred cccccCCCCChhHHHHHHHHhh----hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 549 MKPEYGLEPHLEHYYCMVDLLG----QAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 549 ~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
|.+ + -+..+.+.|..++. ..++..+|.-+|+++. ..|+..+.+-...++...|++++|..+++.++..++
T Consensus 163 mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 983 2 34455565655554 4467899999999993 678999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChhhHH-HHHHHHHhc
Q 005943 623 EDPSKYVMLSNVYATLGMWDSLS-KVRKAGKKL 654 (668)
Q Consensus 623 ~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 654 (668)
.++.++..++.+-...|.-.++. +.+..++..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999999998888888765554 445444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.4e-05 Score=72.58 Aligned_cols=182 Identities=14% Similarity=0.057 Sum_probs=124.3
Q ss_pred CCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-Hh---
Q 005943 419 DVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKE---DITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-VV--- 489 (668)
Q Consensus 419 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~--- 489 (668)
......+......+...|+++.|...++.+.... +.+ ...+..+..++.+.|++++|...++++.+ |+ ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4455677778888899999999999999987764 222 24567788999999999999999998864 32 21
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChh
Q 005943 490 SWTGIIVGCGQN--------GRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLE 560 (668)
Q Consensus 490 ~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 560 (668)
.+..+..++... |++++|.+.++++... .|+.. .+..+..... ... ... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH---------H
Confidence 455555566554 7889999999999885 55543 2222211100 000 000 1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PF---KP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
....+...|.+.|++++|...++.. .. .| ....+..+..++...|++++|..+++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1225667788888888888888776 22 22 345777888888888888888888888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00073 Score=59.78 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=94.1
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh----cCCCH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR----HAGLV 539 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~ 539 (668)
...|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+- -+..|.+.|..++. -.+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 345667777777777766622 2222222334455666777777777777763 24455555555543 23457
Q ss_pred HHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhC-CHHHHHHHHHH
Q 005943 540 EEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHN-NTKLVSIIAEQ 616 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~ 616 (668)
..|.-+|++|.. ...|+..+.+-...+....|++++|..+++.. ....++.+...++..-...| +.+-..+....
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 777778888763 46777777777777777778888888877776 23345555544444433344 44444566666
Q ss_pred HHhcCCCCc
Q 005943 617 LLATSPEDP 625 (668)
Q Consensus 617 ~~~~~p~~~ 625 (668)
+....|..+
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 666666654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00018 Score=70.65 Aligned_cols=222 Identities=14% Similarity=0.091 Sum_probs=164.3
Q ss_pred HHHHcCCChhHHHHhhhhcCCC---ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChH
Q 005943 46 SMYADFTSLNDAHKLFDEMARK---NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLD 122 (668)
Q Consensus 46 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 122 (668)
.-+.+.|++.+|.-.||-.... ++..|..|.......++-..|+..+.+..+.. + -+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-P-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-C-ccHHHHHHHHHHHhhhhhHH
Confidence 3456788899999999887553 44578888888888888889999999999877 2 34566777777888888888
Q ss_pred HHHHHHHHHHHcCCCCCchHhhHHHhhhhhc-------CChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHh
Q 005943 123 LGRLIHERITREKLEYDTVLMNTLLDMYVKC-------GSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKR 195 (668)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (668)
.|..+++..+...++- ..+..+ ... +-.+...+..+. ..+++.....
T Consensus 371 ~Al~~L~~Wi~~~p~y-----~~l~~a-~~~~~~~~~~s~~~~~~l~~i~--------------------~~fLeaa~~~ 424 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKY-----VHLVSA-GENEDFENTKSFLDSSHLAHIQ--------------------ELFLEAARQL 424 (579)
T ss_pred HHHHHHHHHHHhCccc-----hhcccc-CccccccCCcCCCCHHHHHHHH--------------------HHHHHHHHhC
Confidence 9999998887654320 000000 000 001112222222 2455555667
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 005943 196 GFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSS 275 (668)
Q Consensus 196 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 275 (668)
+..+|...+..|--.|--.|++++|...|+.....++. |...||-|.-.++...+-++|+..+.+..+
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------------d~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------------DYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------------hHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 76788888999999999999999999999998844443 788999999999999999999999999988
Q ss_pred hhhcCCCC-eeeHHHHHHHHHhCCChhHHHHHHHHHH
Q 005943 276 WAASAYGN-VALWNSMISGYVLNEQNEEAITLLSHIH 311 (668)
Q Consensus 276 ~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 311 (668)
.+|+ +.+...|.-+|...|.+++|...|-..+
T Consensus 493 ----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 493 ----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 7786 5677778888999999999999887654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00014 Score=78.46 Aligned_cols=225 Identities=10% Similarity=0.116 Sum_probs=167.1
Q ss_pred CcHHHHHHHHHHhccccchHhHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCChHHHHHHhccCCC-CC-HhHHHH
Q 005943 420 VNQFIISSVLKVCSCLASLRRGKQVHAFCVKR-GFEK---EDITLTSLIDMYLKCGEIDDGLALFKFMPE-RD-VVSWTG 493 (668)
Q Consensus 420 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~ 493 (668)
-+...|...|......++.++|..+.++.... ++.- -...|.++++.-..-|.-+...++|++..+ -| ...|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 34456667777778888888888888776643 2211 234566777666666777888888988876 23 456888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC---hhHHHHHHHHhh
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH---LEHYYCMVDLLG 570 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 570 (668)
|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+... .-|. .....-.+..-.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHh
Confidence 999999999999999999999987 344556788899999999999999999999884 3443 555666677778
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCCch-hHHHHHHHHHhcCChhhHH
Q 005943 571 QAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATS--PEDPS-KYVMLSNVYATLGMWDSLS 645 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~-~~~~l~~~~~~~g~~~~a~ 645 (668)
+.|+.+.+..+|+.. ..+.-...|+.++..-.++|+.+.++.+|+++..+. |.... .|......-.+.|+-+.+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 999999999999987 223356789999999999999999999999999844 55444 3445555445557755444
Q ss_pred HHH
Q 005943 646 KVR 648 (668)
Q Consensus 646 ~~~ 648 (668)
.+-
T Consensus 1692 ~VK 1694 (1710)
T KOG1070|consen 1692 YVK 1694 (1710)
T ss_pred HHH
Confidence 443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-05 Score=76.74 Aligned_cols=122 Identities=15% Similarity=0.155 Sum_probs=98.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACET 603 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 603 (668)
...++..+...++++.|.++++++.+. .|+ ....+++.+...++-.+|.+++++. ...| +...+......|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666677788888899999888854 354 4455778888888888888888877 3333 55566666667889
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 604 HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
.++++.|..+.+++.+..|.+..+|..|+.+|.+.|++++|...++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0001 Score=70.29 Aligned_cols=191 Identities=9% Similarity=0.066 Sum_probs=139.5
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 005943 462 SLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNG-RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG 537 (668)
Q Consensus 462 ~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 537 (668)
.+-..+...++.++|+.++.++.+ | +...|+....++...| ++++++..++++.+.. +-+...|+.....+.+.|
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 333445556788888888888775 3 3445655555666666 6899999999999853 334446766655566666
Q ss_pred CH--HHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhh---CC---
Q 005943 538 LV--EEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETH---NN--- 606 (668)
Q Consensus 538 ~~--~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~---~~--- 606 (668)
.. +++..+++++. ...| +.+.|.....++...|+++++++.++++ . ...|...|+....++.+. |.
T Consensus 121 ~~~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 53 67888888887 3455 6889999999999999999999999998 3 234667787776665543 22
Q ss_pred -HHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHHhcCC
Q 005943 607 -TKLVSIIAEQLLATSPEDPSKYVMLSNVYAT----LGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 607 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 656 (668)
.+....+..+++..+|++.++|..+..++.. .++..+|.+...+..+.++
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 3567888889999999999999999999988 3556778888877665444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00012 Score=70.40 Aligned_cols=136 Identities=15% Similarity=0.094 Sum_probs=68.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHH
Q 005943 499 GQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 577 (668)
...|+++.|+..++.+... .+-|..........+.+.++.++|.+.++++. ...|+ ....-.+.++|.+.|++.+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCChHH
Confidence 3445555555555555543 12223333444445555555555555555555 23444 3344455555555555555
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 578 AEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 578 A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
|..+++.. ..+-|+..|..|..+|...|+..++..... ..|.-.|++++|+..+....+..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence 55555554 222344555555555555555554433322 23444555666666665555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00021 Score=68.90 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=55.3
Q ss_pred cCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTKLVSI 612 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 612 (668)
..|.+++|+..++.+.+ ..+-|...+....+.+.+.++..+|.+.++++ ...|+ ...+..+..++.+.|++++|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 44555555555555442 11223344444445555555555555555544 23333 3333444444555555555555
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 613 IAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 613 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
++++....+|+++..|..|+.+|...|+..+|....-+
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555555555555555555555555555555544433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=64.58 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+....-.+...+...|++++|..+|+-+ ...| +..-|..|...+...|++++|+..|.++..++|+++.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3555666777788999999999999987 3444 5667788888899999999999999999999999999999999999
Q ss_pred HhcCChhhHHHHHHHHHhcC
Q 005943 636 ATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~~ 655 (668)
...|+.+.|++.|+......
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999877653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0002 Score=62.73 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=88.9
Q ss_pred ccchHhHHHHHHHHHHh---C-CCCchh-HHHHHHHHHHhcCChHHHHHHhccCCC--CCHh-HHHHHHHHHHhcCChHH
Q 005943 435 LASLRRGKQVHAFCVKR---G-FEKEDI-TLTSLIDMYLKCGEIDDGLALFKFMPE--RDVV-SWTGIIVGCGQNGRAKE 506 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~ 506 (668)
..+.++..+++..+... | ..++.. .|..++-+....|+.+.|...++.+.+ |+.. .-..-..-+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 34566666666655432 2 233332 233444444455566666555555442 2111 00001111223455666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-
Q 005943 507 AIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM- 585 (668)
Q Consensus 507 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 585 (668)
|+++++.+.+.. +.|..++---+-..-..|+.-+|++-+..... .+..|.+.|.-+.+.|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 666666655543 22333444333344444554555555555442 44455566666666666666666666655555
Q ss_pred CCCC-CHHHHHHHHHHHHh---hCCHHHHHHHHHHHHhcCCCCchh
Q 005943 586 PFKP-DKTIWASMLKACET---HNNTKLVSIIAEQLLATSPEDPSK 627 (668)
Q Consensus 586 ~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~ 627 (668)
-..| +...+..+...+.- ..+.+.+.++|.+++++.|.+...
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 2233 23333334333221 224555556666666665544333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00035 Score=74.63 Aligned_cols=237 Identities=11% Similarity=0.101 Sum_probs=148.1
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 005943 355 DYIVGSNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKV 431 (668)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 431 (668)
+...+..|+..+...+++++|.++.+...+. ....|-.+...+.+.++...+..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 3455666777887888888888887755432 223343444455566665544433 22333
Q ss_pred hccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHH
Q 005943 432 CSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAI 508 (668)
Q Consensus 432 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 508 (668)
.....++..+..+...+.+.+ -+...+..+..+|-+.|+.++|..+|+++.+ .|+...|.+.-.|... +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 334444444444445554433 3344666777888888888888888887764 3566777777777777 888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCCC
Q 005943 509 AYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEMPF 587 (668)
Q Consensus 509 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (668)
+++.+.... +...+++..+.++|+++.. ..|+ ...+..+.+..... ...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~------------~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGH------------REF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhh------------hcc
Confidence 877776653 4555677777777777773 2333 33333222222111 112
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 588 KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 588 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
..-..++..+..-|...++++++..+++.+++.+|.|..+...++..|. +.|..
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 2334455556666777888999999999999999999888888888777 55555
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00019 Score=62.77 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=144.0
Q ss_pred cCChHHHHHHhccCCC--------CCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCH
Q 005943 470 CGEIDDGLALFKFMPE--------RDVV-SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLV 539 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~--------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~ 539 (668)
..+.++..+++.++.. ++.. .|..++-+....|+.+.|...++.+... + |... .-..-..-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678899988887753 3333 4556666777889999999999999886 3 5443 222222235568999
Q ss_pred HHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 005943 540 EEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQL 617 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 617 (668)
++|.++++.+..+ . +.|..++---+-.....|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999965 2 335777777777778888888888877766 46679999999999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHhcC---ChhhHHHHHHHHHhcCC
Q 005943 618 LATSPEDPSKYVMLSNVYATLG---MWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 618 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~ 656 (668)
+=..|-++..+..++.++.-.| +++-|++++.+..+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999877665 67778888888877655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00043 Score=73.30 Aligned_cols=143 Identities=12% Similarity=0.121 Sum_probs=102.6
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 005943 452 GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFL 527 (668)
Q Consensus 452 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~ 527 (668)
..+.+...+..|.....+.|.+++|..+++...+ |+ ...+..+...+.+.+++++|+..+++.... .|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3455677777788888888888888888887764 54 446666777888888888888888888874 55544 556
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASML 598 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 598 (668)
.+..++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 666677888888888888888874 22223677778888888888888888888877 2345555554444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.019 Score=59.97 Aligned_cols=134 Identities=9% Similarity=0.104 Sum_probs=101.7
Q ss_pred HhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHH--HcCCChhHHHHhhhhcCC---CChhHHHHHHHHHhcCCChh
Q 005943 12 HCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMY--ADFTSLNDAHKLFDEMAR---KNIVSWTTMVTAYTSNKRPN 86 (668)
Q Consensus 12 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 86 (668)
-....++++.|.+-.+++.+.. |+. .|..++.++ .+.|+.++|..+++.... .|..+...+-..|...++.+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 3445678999999999999864 443 455555554 489999999999988743 37778999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhh
Q 005943 87 WAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVK 152 (668)
Q Consensus 87 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 152 (668)
+|..+|++..... |+..-...+..++++.+++.+-.++--++-+. .+-....+-++++....
T Consensus 95 ~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 95 EAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence 9999999999877 88777888889999998888776666555553 33345555566665444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00011 Score=61.24 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=86.9
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005943 510 YFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF 587 (668)
Q Consensus 510 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 587 (668)
.+++..+ ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445554 34543 34566677788889999999999888742 2336778888889999999999999988877 33
Q ss_pred CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 005943 588 KP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKY 628 (668)
Q Consensus 588 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 628 (668)
.| +...+..+...+...|+++.|...++++.+..|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 34 566777778888899999999999999999999876543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=56.69 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=53.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
+...+...|++++|...|+++++..|.++..+..++.++.+.|++++|..+++++.+..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4556788999999999999999999999999999999999999999999999999877663
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.7e-05 Score=72.25 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL 538 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 538 (668)
....++..+...++++.|..+|+++.+.++.....+++.+...++-.+|++++++.... .+-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 34556677777888999999999988766666677888888888889999999988864 23345566666677889999
Q ss_pred HHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCCCCC
Q 005943 539 VEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEMPFKP 589 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 589 (668)
++.|+.+.+++. ...|+ ..+|..|+.+|.+.|+++.|+-.++.++..|
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999998 55775 6799999999999999999999999886443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.1e-05 Score=60.37 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHH
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPED---PSKYVMLS 632 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 632 (668)
++..++..+.+.|++++|.+.++.+ ...|+ ...+..+..++.+.|+++.|...++.+....|.+ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555556666666665555 11222 2234445555666666666666666666655553 34555666
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 NVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.++.+.|++++|.+.++++.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 666666666666666666665544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=48.39 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=31.1
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005943 285 ALWNSMISGYVLNEQNEEAITLLSHIHSSGMCID 318 (668)
Q Consensus 285 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 318 (668)
.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.00 E-value=7e-05 Score=57.83 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=77.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
.+..+...+...|++++|...++.+ ...| +...+..+...+...++++.|...++++.+..|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3556677788888999999888876 3334 3456777777788889999999999999999998888899999999999
Q ss_pred CChhhHHHHHHHHHhcC
Q 005943 639 GMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 639 g~~~~a~~~~~~~~~~~ 655 (668)
|++++|...++...+..
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999988876543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00046 Score=73.79 Aligned_cols=145 Identities=11% Similarity=0.049 Sum_probs=96.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhc
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQA 572 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 572 (668)
++.......++.-+..+++.|.+. .-+...+..+..+|.+.|+.++|..+|+++.+ ..| |..+.+.+...|...
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~---~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK---ADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHh
Confidence 344444445554455555555552 33445677777788888888888888888873 345 577778888888777
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH--------------------HHHH
Q 005943 573 GCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKY--------------------VMLS 632 (668)
Q Consensus 573 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~--------------------~~l~ 632 (668)
++++|.+++.++- ..+...+++..+.++|+++...+|++...+ ..+-
T Consensus 164 -dL~KA~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 164 -DKEKAITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred -hHHHHHHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 8888887776551 114455577777777777777777664443 3333
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 NVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|...++|++++.+++.+.+...
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCC
Confidence 556677899999999999988766
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.6e-05 Score=55.80 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-ChhhHHHHHHHHHhcC
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG-MWDSLSKVRKAGKKLG 655 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 655 (668)
+..+|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888999999999999999999999999999999999999999999 7999999999887654
|
... |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=48.10 Aligned_cols=33 Identities=30% Similarity=0.688 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN 522 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 522 (668)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.4e-05 Score=47.53 Aligned_cols=33 Identities=24% Similarity=0.619 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP 521 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 521 (668)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.02 Score=54.73 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVE 540 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 540 (668)
+..+.-+...|+...|.++-.+..-|+-.-|...+.+++..++|++-..+-.. +-++..|..++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33344445556666666665555556666666666666666666555443321 112355555666666666666
Q ss_pred HHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 541 EAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 541 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
+|..++.++. +..-+..|.++|++.+|.+.--+
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 6655555422 13334555556666555554333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00022 Score=59.98 Aligned_cols=52 Identities=10% Similarity=0.108 Sum_probs=24.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
...+...|++++|+..++.. ...+..+..+...+.+|.+.|++++|+..|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33344455555555554331 12222334444555555555555555555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-05 Score=60.12 Aligned_cols=78 Identities=13% Similarity=0.280 Sum_probs=57.4
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHH
Q 005943 572 AGCFDDAEQLIAEM-PFKP---DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKV 647 (668)
Q Consensus 572 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 647 (668)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46778888888777 2223 444555677788888888888888888 666777667777778888888999998888
Q ss_pred HHH
Q 005943 648 RKA 650 (668)
Q Consensus 648 ~~~ 650 (668)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=47.25 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=18.4
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 005943 106 FMYSAVLKACSLSGDLDLGRLIHERITREKLEY 138 (668)
Q Consensus 106 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 138 (668)
.+|+.++.+|++.|+++.|.++++.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0007 Score=56.92 Aligned_cols=124 Identities=13% Similarity=0.118 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHH
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN---EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCM 565 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 565 (668)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44455554 3677777777777777752 222 123344556677788888888888888754 32222 2234456
Q ss_pred HHHhhhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEMPFK-PDKTIWASMLKACETHNNTKLVSIIAEQL 617 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 617 (668)
..++...|++++|+..++..... .....+......+.+.|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777888888888888776322 23445555666688888888888888765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00026 Score=69.44 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=87.6
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhC
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHN 605 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 605 (668)
-...+...|++++|+..|+++.+ ..| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34556778999999999999984 355 4778888899999999999999999888 4444 5667888888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 606 NTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
+++.|+..|+++++++|.++.+...+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988877776654444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00023 Score=64.72 Aligned_cols=109 Identities=15% Similarity=0.039 Sum_probs=88.6
Q ss_pred CCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh-h--CCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 556 EPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACET-H--NNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 556 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~-~--~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
+-|...|..|...|...|+.+.|...|.+. ... ++...+..+..++.. . .+..++..++++++..+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 337899999999999999999999999887 333 455666666666433 2 35677889999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCC-CCCceeEE
Q 005943 631 LSNVYATLGMWDSLSKVRKAGKKLGE-KKAGMSWI 664 (668)
Q Consensus 631 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 664 (668)
|+..+.+.|++.+|...++.|.+..+ .+|+-+.|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999887 66654433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00036 Score=56.51 Aligned_cols=104 Identities=12% Similarity=0.136 Sum_probs=64.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASML 598 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 598 (668)
++..+...+.+.|++++|.+.++.+.....-.+ ....+..+..++.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777766664311111 1234555667777777777777777765 22232 34566666
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKY 628 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 628 (668)
.++.+.|+.+.|...++++.+..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 667777888888888888888887775544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0003 Score=53.32 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCCchH
Q 005943 71 SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSG--------DLDLGRLIHERITREKLEYDTVL 142 (668)
Q Consensus 71 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 142 (668)
+....|..+...+++.....+|+.+++.|+..|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 3445666677779999999999999999993399999999999987653 34467889999999999999999
Q ss_pred hhHHHhhhhh
Q 005943 143 MNTLLDMYVK 152 (668)
Q Consensus 143 ~~~ll~~~~~ 152 (668)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00048 Score=59.93 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
...+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|+++.|...++++.+..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344556666666667777777776655 21221 3456667777778888888888888888888888888888888
Q ss_pred HHHhcCC--------------hhhHHHHHHHHHhcCC
Q 005943 634 VYATLGM--------------WDSLSKVRKAGKKLGE 656 (668)
Q Consensus 634 ~~~~~g~--------------~~~a~~~~~~~~~~~~ 656 (668)
+|...|+ +++|.+.+++....++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 8877766 4556666666555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.9e-05 Score=53.74 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=45.9
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...|++++|++.++++.+.+|++..++..++.+|.+.|++++|.++++++....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888899999999999998888888899999999999999988888776655
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00067 Score=69.50 Aligned_cols=138 Identities=12% Similarity=0.005 Sum_probs=60.4
Q ss_pred CCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCC--------CHHHHHHHHHhccc
Q 005943 486 RDVVSWTGIIVGCGQN-----GRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAG--------LVEEAWTIFTSMKP 551 (668)
Q Consensus 486 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g--------~~~~a~~~~~~~~~ 551 (668)
.+...|...+++.... ++...|..+|++..+ ..|+.. .|..+..++.... ++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4566666666664332 225567777777776 356542 3443333222110 11122222222111
Q ss_pred ccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 552 EYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 552 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 0011122334444433334444555555555444 2334444444444444455555555555555555555444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.12 Score=54.43 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhCCHH---HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 593 IWASMLKACETHNNTK---LVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.+.++..+.+.++.. +|+.+++......|.|..+=..++++|.-.|-+..|.++++.+.-+.+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 4467778888887655 567778888889999999999999999999999999999999988777
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00069 Score=51.43 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=67.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCC-CCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchh
Q 005943 109 SAVLKACSLSGDLDLGRLIHERITREKL-EYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQ 187 (668)
Q Consensus 109 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (668)
...|..|...+++.....+++.+++.|+ .|++.+|+.++.+.++..--...+-..|. ....
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~------------------~LLt 90 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLT------------------NLLT 90 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHH------------------HHHH
Confidence 4456777778999999999999999999 89999999999988775432111111111 1345
Q ss_pred hHHHHHHhCCCCChhhHHHHHHHHHhC
Q 005943 188 VHAFCVKRGFEKEDVTLTSLIDMYLKC 214 (668)
Q Consensus 188 ~~~~~~~~g~~~~~~~~~~li~~~~~~ 214 (668)
+..+|+..+++|+..+|+.++..+.+.
T Consensus 91 vYqDiL~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 91 VYQDILSNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHh
Confidence 678888999999999999999887653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=52.16 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=51.9
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..+.+.++++.|.+++++++..+|+++..+...+.++.+.|++++|.+.++...+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577889999999999999999999999999999999999999999999999888776
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=62.40 Aligned_cols=162 Identities=10% Similarity=0.017 Sum_probs=115.0
Q ss_pred hHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HhhcCCCHHHHHHHHHhcccccCCCCChhHHHH-
Q 005943 489 VSWTGI-IVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS--ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYC- 564 (668)
Q Consensus 489 ~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~- 564 (668)
..|..+ ..++.-.|++++|...--..++. .++. .+..+++ ++...++.+.|...|++.. .+.|+...-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 344433 23456678888888877666653 2221 2333333 4456778888888888877 55666432221
Q ss_pred ------------HHHHhhhcCChHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 565 ------------MVDLLGQAGCFDDAEQLIAEM-P-----FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 565 ------------l~~~~~~~g~~~~A~~~~~~~-~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
=.+-..+.|++.+|.+.+.+. . .+|+...|.....+..+.|+..+|+.-.+++.+++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 123456778899999988877 3 3355666777777788899999999999999999999888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.|..-+.++...++|++|.+.++...+...
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999988876544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00065 Score=58.92 Aligned_cols=94 Identities=14% Similarity=0.001 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
....+..++..+...|++++|...|++. ...|+ ..++..+...+...|++++|+..++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3566777788888889999999988877 22222 347788888899999999999999999999999888888888
Q ss_pred HHHH-------hcCChhhHHHHHHHH
Q 005943 633 NVYA-------TLGMWDSLSKVRKAG 651 (668)
Q Consensus 633 ~~~~-------~~g~~~~a~~~~~~~ 651 (668)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.071 Score=50.67 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccc-cCCCCC--hhH
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLK-----PNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPE-YGLEPH--LEH 561 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~~ 561 (668)
+..+...+.+.|++++|+++|++....-.. .+.. .|...+-++...||+..|.+.+++.... .++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 445666777888888888888887764322 2222 2333344566678888888888887632 122222 334
Q ss_pred HHHHHHHhhhc--CChHHHHHHHHhCC
Q 005943 562 YYCMVDLLGQA--GCFDDAEQLIAEMP 586 (668)
Q Consensus 562 ~~~l~~~~~~~--g~~~~A~~~~~~~~ 586 (668)
...|+.++-.. ..+++|+.-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 55666666432 34666666666664
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.08 Score=51.14 Aligned_cols=417 Identities=10% Similarity=0.060 Sum_probs=225.6
Q ss_pred HHhCCChHHHHHHhhccCCCCc---chHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeH
Q 005943 211 YLKCGEIDDGLALFNFMPERDV---VSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALW 287 (668)
Q Consensus 211 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 287 (668)
+-+.+++.+|.++|.++.+... ..+. .....+.++++|.. ++++.....+....+ ..| ...|
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lk---------eEvl~grilnAffl-~nld~Me~~l~~l~~----~~~-~s~~ 80 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLK---------EEVLGGRILNAFFL-NNLDLMEKQLMELRQ----QFG-KSAY 80 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHH---------HHHHhhHHHHHHHH-hhHHHHHHHHHHHHH----hcC-CchH
Confidence 4578999999999988873221 1111 01122344555543 456666666665544 334 3345
Q ss_pred HHHHHH--HHhCCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 005943 288 NSMISG--YVLNEQNEEAITLLSHIHSS--GMCI------------DSYTFTSALKACINLLNFNSRFALQVHGLIVTSG 351 (668)
Q Consensus 288 ~~li~~--~~~~~~~~~a~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 351 (668)
-.+..+ +.+.+++.+|++.+..-.+. +-.| |-.-=++..+++...|.+ .+++.++..+...=
T Consensus 81 l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f--~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 81 LPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRF--SEGRAILNRIIERL 158 (549)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHH
Confidence 555444 35678888988888776554 3222 122224566778888888 78887777776654
Q ss_pred C----CCccchHHHHHHHHHhcCChHH---------------HHHHHccCCCCChh----------hHHHHHHHHHhc--
Q 005943 352 Y----ELDYIVGSNLIDLYARLGNVKS---------------ALELFHRLPKKDVV----------AWSGLIMGCTKH-- 400 (668)
Q Consensus 352 ~----~~~~~~~~~l~~~~~~~~~~~~---------------a~~~~~~~~~~~~~----------~~~~l~~~~~~~-- 400 (668)
+ ..+..+|+.++-++.+.--++. +.-..+++...+.. ....++....-.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 4 4788888887776665422221 11111111111111 111111111111
Q ss_pred CCcHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhccccchHhHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCChHH
Q 005943 401 GLNSLAYLLFRDMINSNQDVNQF-IISSVLKVCSCLASLRRGKQVHAFCVKRGFE----KEDITLTSLIDMYLKCGEIDD 475 (668)
Q Consensus 401 ~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 475 (668)
.+..--.++++.....-+.|+.. ....++..+.. +.+++..+-+.+....+. .-..++..++....+.++...
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11112233333333444555543 23334444433 445555444443333211 123456667777778888888
Q ss_pred HHHHhccCC--CCCHhH-------HHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HhhcCCC-
Q 005943 476 GLALFKFMP--ERDVVS-------WTGIIVGCG----QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS---ACRHAGL- 538 (668)
Q Consensus 476 A~~~~~~~~--~~~~~~-------~~~l~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~g~- 538 (668)
|.+.+.-+. +|+... -..+-+..+ ..-+...-+.+|+......+.-.. ....++. -+-+.|.
T Consensus 317 a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~ 395 (549)
T PF07079_consen 317 AKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQC 395 (549)
T ss_pred HHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCc
Confidence 877766443 343221 111112222 112344455666666664332221 2222222 3445555
Q ss_pred HHHHHHHHHhcccccCCCC-ChhHHHHHH----HHhhhcCC---hH---HHHHHHHhCCCCC----CHHHHHHHHHH--H
Q 005943 539 VEEAWTIFTSMKPEYGLEP-HLEHYYCMV----DLLGQAGC---FD---DAEQLIAEMPFKP----DKTIWASMLKA--C 601 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~----~~~~~~g~---~~---~A~~~~~~~~~~p----~~~~~~~l~~~--~ 601 (668)
-+.|+++++.+. .+.| |..+-+.+. ..|..+=. +. +-..++++.+..| +...-|.+..| +
T Consensus 396 dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 396 DEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred cHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 788999988887 4445 333333222 23332211 11 2233344555444 45566777777 6
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
..+|++.++.-...-+.+..| ++.+|..++-.+....+|++|..++.++
T Consensus 473 ysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 689999999988888888999 7999999999999999999999999875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0067 Score=55.74 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=99.5
Q ss_pred HHHHHhcCChHHHHHHhccCCC--CCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhc
Q 005943 464 IDMYLKCGEIDDGLALFKFMPE--RDVV----SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE--ITFLGVLSACRH 535 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 535 (668)
...+...|++++|.+.|+++.. |+.. ..-.+..++.+.++++.|...+++..+. .|+. ..|...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3444566777777777777654 3221 1234556677777888888888777774 2322 233333333221
Q ss_pred --CC---------------CH---HHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHH
Q 005943 536 --AG---------------LV---EEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWA 595 (668)
Q Consensus 536 --~g---------------~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 595 (668)
.+ |. ..|...|++ +++-|-...-..+|...+..+...--...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~la~~e~- 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDRLAKYEL- 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHHHHHHHH-
Confidence 10 11 122233333 333333333344454444433211001111
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 596 SMLKACETHNNTKLVSIIAEQLLATSPED---PSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 596 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.+..-|.+.|.+..|..-++.+++..|++ +.++..++.+|...|..++|..+...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 23444889999999999999999988775 45677888999999999999998877653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0016 Score=61.48 Aligned_cols=135 Identities=13% Similarity=0.175 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA-CRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
..|-.+++...+.+..+.|..+|++.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357778888888888999999999988542 2233344433333 33457777799999999864 4556788888999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 568 LLGQAGCFDDAEQLIAEM-PFKPDK----TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+..|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987 222333 48999999989999999999999999998887543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00011 Score=42.52 Aligned_cols=30 Identities=37% Similarity=0.622 Sum_probs=24.6
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 005943 286 LWNSMISGYVLNEQNEEAITLLSHIHSSGM 315 (668)
Q Consensus 286 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 315 (668)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887763
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.03 Score=56.14 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=16.4
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHH
Q 005943 198 EKEDVTLTSLIDMYLKCGEIDDGLAL 223 (668)
Q Consensus 198 ~~~~~~~~~li~~~~~~g~~~~A~~~ 223 (668)
.|-...+.+=+..|...|.+++|.++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~i 578 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQI 578 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcc
Confidence 34445555556667778888777643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00063 Score=61.48 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=80.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhc
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQA 572 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 572 (668)
..-+.+.++|.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+... .+.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 34467788999999999999884 55 55667888889999999999988877776 55675 77888999999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005943 573 GCFDDAEQLIAEM-PFKPDKTIWASMLKA 600 (668)
Q Consensus 573 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 600 (668)
|++++|.+.|++. .+.|+..+|..=+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999998887 678887777654443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00012 Score=42.30 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRL 519 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 519 (668)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00075 Score=58.22 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=81.6
Q ss_pred HHHhhhhc--CCCChhHHHHHHHHHhc-----CCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhcc-----------
Q 005943 57 AHKLFDEM--ARKNIVSWTTMVTAYTS-----NKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLS----------- 118 (668)
Q Consensus 57 a~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~----------- 118 (668)
-...|+.. ...|-.+|..++..+.+ .|..+-....+..|.+.|+. -|..+|+.||..+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~-kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE-KDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc-ccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 34556665 45788888888888864 46777778888899999987 8999999999877542
Q ss_pred -----CChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh
Q 005943 119 -----GDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT 157 (668)
Q Consensus 119 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 157 (668)
.+-+-|.+++++|...|+-||..|+..++..+++.+..-
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 245678999999999999999999999999999988776
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.092 Score=50.27 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 359 GSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++...+... +-++..|..++.+|.+.|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333455555566666666666666666666666666666666666655443221 12234444455555555554
Q ss_pred HhHHHHHH
Q 005943 439 RRGKQVHA 446 (668)
Q Consensus 439 ~~a~~~~~ 446 (668)
.+|..+..
T Consensus 254 ~eA~~yI~ 261 (319)
T PF04840_consen 254 KEASKYIP 261 (319)
T ss_pred HHHHHHHH
Confidence 44444444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00035 Score=63.10 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=91.1
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCH
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNT 607 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 607 (668)
.-+.+.+++.+|+..|.+.+ .+.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 44778999999999999998 6777 4666777889999999999999887766 55553 55889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChh
Q 005943 608 KLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWD 642 (668)
Q Consensus 608 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 642 (668)
++|++.|+++++++|++......|-.+-.+.+.-.
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999977777777766666555
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0009 Score=57.74 Aligned_cols=114 Identities=12% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCCchHHHHHHHHh-----ccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh-HHHHhhhhhhhhhcCCCch
Q 005943 103 PNGFMYSAVLKACS-----LSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT-RKLFDQYSNWAASAYGNVA 176 (668)
Q Consensus 103 p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 176 (668)
.|-.+|..++..+. +.|.++-....+..|.+.|+.-|..+|+.||+.+=+ |..- +.+|+.+=.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~---------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFM---------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhc----------
Confidence 56666777766665 468888889999999999999999999999999876 4443 444333221
Q ss_pred hhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCCh-HHHHHHhhcc
Q 005943 177 LWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEI-DDGLALFNFM 227 (668)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 227 (668)
.|..-.+-+.++++.|...|+-||.+|+..++..+.+.+.. .+..++.-.|
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 23334445789999999999999999999999999887752 3333443333
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=64.48 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=82.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhc
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQA 572 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 572 (668)
....+...|++++|+..|++.++.. +-+...|..+..++...|++++|+..++++. .+.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999852 3345678888889999999999999999998 4456 577888999999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005943 573 GCFDDAEQLIAEM-PFKPDKTIWASMLKA 600 (668)
Q Consensus 573 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 600 (668)
|++++|...|++. ...|+......++..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999987 556665555444433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.17 Score=52.22 Aligned_cols=328 Identities=11% Similarity=0.052 Sum_probs=174.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHH
Q 005943 288 NSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYA 367 (668)
Q Consensus 288 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (668)
..+|+-+...+.+..|+++-..+...-..- ...|.....-+.+..+..++.+.+..+.-.+... .+-..|..+..-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 345667778888888888877764332222 5677777777776655444444444444333333 33445555666666
Q ss_pred hcCChHHHHHHHccCCCC--------ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchH
Q 005943 368 RLGNVKSALELFHRLPKK--------DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLR 439 (668)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 439 (668)
.+|+.+-|..+++.=+.. +..-+...+.-....|+.+....++-.|... .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 789999999888654432 2233555566667778887777776666532 1111111111 1223
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhc-cC------CCCCHhHHHHHHHHHHhcCC---------
Q 005943 440 RGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFK-FM------PERDVVSWTGIIVGCGQNGR--------- 503 (668)
Q Consensus 440 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~------~~~~~~~~~~l~~~~~~~~~--------- 503 (668)
.|..++.++.+..-... +-+.|-...+.. +..-|. +- ..+-.........++.+...
T Consensus 590 ~a~~lY~~~~r~~~~~~------l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDRAT------LYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhhHHHHHHHHhhchhh------hhhhhhcccchh-hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 33344433332110000 011111111111 111111 00 01111122223333333322
Q ss_pred -hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHH
Q 005943 504 -AKEAIAYFQEMIQ-SRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQL 581 (668)
Q Consensus 504 -~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 581 (668)
..+-+.+.+.+.. .|..-...+.+--+.-+...|...+|.++-++.+ -||...|..-+.++...+++++-.++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 1111122222222 1222333455555566667788888877776665 57888888888888888888877777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHH
Q 005943 582 IAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 582 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
-+..+. +.-|.-.+.+|.+.|+.++|..++-+.-. +...+.+|.+.|++.+|.+.--
T Consensus 738 Akskks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccCC---CCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 666642 34466677788888888888777766322 2256677778888877776543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0012 Score=50.69 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=42.9
Q ss_pred HHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCH
Q 005943 530 LSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNT 607 (668)
Q Consensus 530 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 607 (668)
...+...|++++|..++++..+. .+.+...+..+..++...|++++|.+.++.. ...| +...+..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33344445555555555444421 1112234444455555555555555555443 1112 223445555555555666
Q ss_pred HHHHHHHHHHHhcCC
Q 005943 608 KLVSIIAEQLLATSP 622 (668)
Q Consensus 608 ~~a~~~~~~~~~~~p 622 (668)
+.|...++++.+..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666555444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00044 Score=48.58 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=48.1
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
+...+.+.|++++|.+.|+.+ ...| +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 4445 566777788888899999999999999999998874
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0038 Score=64.11 Aligned_cols=142 Identities=11% Similarity=0.042 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHhhc--C---CCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhc--------CChHHHHHHHHh
Q 005943 519 LKPNEITFLGVLSACRH--A---GLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQA--------GCFDDAEQLIAE 584 (668)
Q Consensus 519 ~~p~~~~~~~ll~~~~~--~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 584 (668)
.+.|...|...+++... . ++...|..+|++.. ..+|+ ...|..+..++... ++...+.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45566677776665432 2 23567777777777 44676 33344333333211 123445555444
Q ss_pred C----CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc
Q 005943 585 M----PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAG 660 (668)
Q Consensus 585 ~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 660 (668)
. ....+...|..+.......|++++|...++++.+++| +...|..+++++...|+.++|...+++.....+..|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3 1223445666665555667788888888888888887 4667888888888888888888888888777775555
Q ss_pred eeEE
Q 005943 661 MSWI 664 (668)
Q Consensus 661 ~~~~ 664 (668)
+-|.
T Consensus 489 ~~~~ 492 (517)
T PRK10153 489 LYWI 492 (517)
T ss_pred HHHH
Confidence 5444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.023 Score=47.60 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCC-CChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CHHH
Q 005943 519 LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLE-PHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP---DKTI 593 (668)
Q Consensus 519 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~ 593 (668)
.-|....-..|..+..+.|++.+|...|++... |+- -|......+.++....+++.+|...++++ ...| ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345555555666677777777777777777764 433 35666667777777777777777777766 2112 2223
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
...+...+...|.+..|+..|+.+..-.|. +.....++..+.++|+.++|..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 344556677777777777777777776665 4455566666777776666655444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0061 Score=57.93 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHH
Q 005943 460 LTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQN-GRAKEAIAYFQEMIQS----RLKPN--EITFLGVLSA 532 (668)
Q Consensus 460 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~ 532 (668)
|...+..|...|++..|-.+ +..+...|-.. |++++|++.|++..+. | .+. ..++..+...
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~-----------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKC-----------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHH-----------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 34445556666666666544 33456666666 7788888877776653 2 221 1245666667
Q ss_pred hhcCCCHHHHHHHHHhcccccC----CCCCh-hHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYG----LEPHL-EHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~----~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+.+.|++++|.++|++.....- .+.+. ..+...+-++...|+...|.+.+++.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7778888888888777654311 01111 12223334555667777777777765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00043 Score=51.72 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=51.7
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHH
Q 005943 501 NGRAKEAIAYFQEMIQSRL-KPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 578 (668)
.|+++.|+.+++++.+..- .|+...+..+..++.+.|++++|..+++. . ...|+ ......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4677888888888877532 12334445567788888888888888877 2 22332 34444567778888888888
Q ss_pred HHHHHh
Q 005943 579 EQLIAE 584 (668)
Q Consensus 579 ~~~~~~ 584 (668)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0018 Score=53.59 Aligned_cols=90 Identities=7% Similarity=-0.027 Sum_probs=71.6
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMW 641 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 641 (668)
...--+...|++++|..+|.-+- ..-+..-|..|...+...+++++|...|..+..+.++||..+...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33444567789999998888762 2235556677777788888999999999999998899999999999999999999
Q ss_pred hhHHHHHHHHHh
Q 005943 642 DSLSKVRKAGKK 653 (668)
Q Consensus 642 ~~a~~~~~~~~~ 653 (668)
+.|+.-|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999988887765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0039 Score=61.28 Aligned_cols=121 Identities=18% Similarity=0.081 Sum_probs=92.8
Q ss_pred cCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC----CCHh
Q 005943 416 SNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKR--GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE----RDVV 489 (668)
Q Consensus 416 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~ 489 (668)
.+.+.+...+..+++.+....+++.+..++..++.. ....-..+..+++..|.+.|..+.++.++..=.. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445667778888888888888888888888877765 2223344556888888888888888888876553 7888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHA 536 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 536 (668)
++|.|+..+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88889988888899988888888888877777777776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.004 Score=54.14 Aligned_cols=129 Identities=14% Similarity=0.150 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN--EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYC 564 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 564 (668)
...+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+++... ..| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHH
Confidence 44566677777777888888888887776432222 24566677777778888888887777763 344 3555556
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
+..+|...|+...+..-++.. ...+++|.++++++...+|++ +..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544322221 123677888888888888886 4444444544443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=63.15 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSAL 326 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 326 (668)
......+++.+....+++.+..++-+.........--..+..++++.|.+.|..+.++.++..=..-|+-||..|++.+|
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 34455567777777888899999888854322232234456799999999999999999999999999999999999999
Q ss_pred HHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhc
Q 005943 327 KACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARL 369 (668)
Q Consensus 327 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (668)
..+.+.|++ ..|.++...|...+...++.++..-+.+|.+.
T Consensus 146 d~fl~~~~~--~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNY--KSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccH--HHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999 99999999999888888887777666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0018 Score=61.20 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=102.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ-AGCFDDAEQLIAEM--PFKPDKTIWASMLKA 600 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 600 (668)
.+|..++..+.+.+..+.|..+|++.... -..+..+|...+..-.. .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888899999999999999843 23356667666666444 46666799999988 355678889999999
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 601 CETHNNTKLVSIIAEQLLATSPEDP---SKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+.+.++.+.|..+|++++..-|.+. .+|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999766644 589999999999999999999999988753
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00021 Score=42.02 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChhhHHH
Q 005943 614 AEQLLATSPEDPSKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 614 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 646 (668)
|+++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 788999999999999999999999999999863
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0024 Score=59.14 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCCh----hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHH
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL----EHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWAS 596 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ 596 (668)
|...+....+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+ ...|+ ...+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 443333334445555555555555532 2321 34444455555555555555555544 11111 222223
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+...+...|+.+.|..+|+++++..|++
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3333444555555555555555555544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00054 Score=48.73 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=23.3
Q ss_pred cCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
..|++++|.+.|+++... .| +...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555422 23 3444445555555555555555555555
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.22 Score=47.25 Aligned_cols=271 Identities=15% Similarity=0.151 Sum_probs=172.7
Q ss_pred cCChHHHHHHHccCC---CCChhhHHHHHHH--HHhcCCcHHHHHHHHHHHHcCCCCcH--HHHHHHHHHhccccchHhH
Q 005943 369 LGNVKSALELFHRLP---KKDVVAWSGLIMG--CTKHGLNSLAYLLFRDMINSNQDVNQ--FIISSVLKVCSCLASLRRG 441 (668)
Q Consensus 369 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a 441 (668)
.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|.+. |.. ..+..+.-.-.+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666666554433 2344444444443 33468888888888888642 111 1222333333566777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC-----CCCHh--HHHHHHHHHH---hcCChHHHHHHH
Q 005943 442 KQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP-----ERDVV--SWTGIIVGCG---QNGRAKEAIAYF 511 (668)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~a~~~~ 511 (668)
.++-+..-..- +.-.....+.+...|..|+++.|+++.+.-. ++++. .-..|+.+-. -..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77776654432 3345677888899999999999999988654 34432 2222332211 123455666655
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC----C
Q 005943 512 QEMIQSRLKPNEIT-FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM----P 586 (668)
Q Consensus 512 ~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 586 (668)
.+..+ +.|+-.. -..-..++.+.|+..++-.+++.+-+. .|.+..+..++ +.+.|+ .++.-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGD--TALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHh
Confidence 55554 5777653 344456889999999999999999844 66666554433 334454 333333322 2
Q ss_pred CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CChhhHHHHHHHHHh
Q 005943 587 FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL-GMWDSLSKVRKAGKK 653 (668)
Q Consensus 587 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 653 (668)
.+| +..+...+..+....|++..|..-.+.+....|. .++|..++++-... ||-.+++..+-+..+
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 344 5567777888888999999999999998888887 56888888887655 999999988866543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0071 Score=52.39 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN--EITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
.|..+...+...|++++|+..|++.......|. ..++..+..++...|++++|...+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555666666666665554321111 1245555555555566666665555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.25 Score=46.82 Aligned_cols=255 Identities=13% Similarity=0.072 Sum_probs=164.6
Q ss_pred hHHHHHHHHHh--cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHh--ccccchHhHHHHHHHHHHhCCCCchhH--HHH
Q 005943 389 AWSGLIMGCTK--HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVC--SCLASLRRGKQVHAFCVKRGFEKEDIT--LTS 462 (668)
Q Consensus 389 ~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 462 (668)
-|.+|-.++.. .|+-..|.+.-.+-.+ -+..|...+..++.+- .-.|+.+.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555555544 4666666655544321 1334444455555433 4469999999999998753 22221 233
Q ss_pred HHHHHHhcCChHHHHHHhccCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHh--h
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE--RD-VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNEI--TFLGVLSAC--R 534 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~--~ 534 (668)
|.-.--+.|..+.|..+-++... |. .-.+...+...+..|+++.|+++++.-++.. +.++.. .-..|+.+- .
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 44444577888888887776654 32 3467889999999999999999998877643 445543 222333321 1
Q ss_pred -cCCCHHHHHHHHHhcccccCCCCChhH-HHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHH
Q 005943 535 -HAGLVEEAWTIFTSMKPEYGLEPHLEH-YYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVS 611 (668)
Q Consensus 535 -~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~ 611 (668)
-..+...|...-.+.. .+.||... -..-..+|.+.|+..++-.+++.+ +..|.+..+...+. .+.|+.....
T Consensus 240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHHHH
Confidence 1234556666555544 66777433 334467899999999999999988 66787777655443 4667654432
Q ss_pred -HHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 612 -IIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 612 -~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+-.+++..+.|++......++.+-...|++-.|+.--+...
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 44555666889999999999999999999887776554443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.019 Score=47.39 Aligned_cols=94 Identities=7% Similarity=-0.012 Sum_probs=55.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYC 564 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 564 (668)
+....-.+..-+...|++++|..+|+-+.. +.|... -|..|..++-..|++++|+..|.... .+.| |+..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHH
Confidence 333344444555566666666666666665 344433 34555555666666777766666665 3334 3566666
Q ss_pred HHHHhhhcCChHHHHHHHHhC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+..++...|+.+.|.+.|+..
T Consensus 109 ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666666666544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.063 Score=42.23 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=90.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
..-.|..++..++..+.... .+..-++.++--...+-+-+-..++++.+-+-+.+. .+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34568888889998888763 355556666655555556566666776665433322 2444455
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 578 AEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 578 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
...-+-.+. .+.......+.++...|+-+.-.+++..+.+.+..+|.++..++.+|.+.|+..++.+++++.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 544444443 244556777888889999999999999988777777999999999999999999999999999999874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0019 Score=46.06 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=50.7
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCC
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHN-NTKLVSIIAEQLLATSP 622 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 622 (668)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3466777888888888888888888877 3334 5667777788888888 68899999998888877
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.014 Score=46.36 Aligned_cols=88 Identities=20% Similarity=0.152 Sum_probs=46.0
Q ss_pred HHHhhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HH-HHHHHHHHHH
Q 005943 530 LSACRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD---KT-IWASMLKACE 602 (668)
Q Consensus 530 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~-~~~~l~~~~~ 602 (668)
..++-..|+.++|+.+|++.... |.... ...+..+...|...|++++|..++++. ...|+ .. ....+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34555666666666666666643 44443 334455556666666666666666655 11232 11 1122223445
Q ss_pred hhCCHHHHHHHHHHHH
Q 005943 603 THNNTKLVSIIAEQLL 618 (668)
Q Consensus 603 ~~~~~~~a~~~~~~~~ 618 (668)
..|+.++|...+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666665554444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.29 Score=49.96 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=33.8
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQY 273 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 273 (668)
-+....-.+..++.+.|.-++|.+.|-+--.|. +.+..|...+++.+|.++-++.
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk--------------------aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK--------------------AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhccCcH--------------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666677777777777776664444333 2334466667777777776665
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.11 Score=50.23 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=101.0
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCC-------CHhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005943 462 SLIDMYLKCGEIDDGLALFKFMPER-------DVVSWTGIIVGCGQ---NGRAKEAIAYFQEMIQSRLKPNEITFLGVLS 531 (668)
Q Consensus 462 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 531 (668)
.++-.|....+++..+++.+.+... ....-....-++.+ .|+.++|+.++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777888888888777652 11222234445556 7889999999888666666778888887777
Q ss_pred Hhh----c-----CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChH----HHHHHH---HhC----C---CC
Q 005943 532 ACR----H-----AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFD----DAEQLI---AEM----P---FK 588 (668)
Q Consensus 532 ~~~----~-----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~----~---~~ 588 (668)
.|- . ....+.|...|.+.- .+.||...--.++-.+...|... +..++- ..+ + ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 652 1 224677888887765 44566544334444444444322 222222 111 1 12
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 589 PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 589 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
.+--.+-+++.++.-.|+.++|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344455677888888999999999999999988775
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.47 Score=46.13 Aligned_cols=457 Identities=11% Similarity=0.087 Sum_probs=219.7
Q ss_pred HHcCCChhHHHHhhhhcCC---CC------hhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHH--h
Q 005943 48 YADFTSLNDAHKLFDEMAR---KN------IVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKAC--S 116 (668)
Q Consensus 48 ~~~~g~~~~a~~~~~~~~~---~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~--~ 116 (668)
+-+++++.+|.++|.++-. .+ ...-+.++++|.. .+.+.....+....+.. | ...|-.+..++ .
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---C-CchHHHHHHHHHHH
Confidence 3467889999999988742 22 2245567777765 45666666666666654 5 44566666554 4
Q ss_pred ccCChHHHHHHHHHHHHc--CCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHH
Q 005943 117 LSGDLDLGRLIHERITRE--KLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVK 194 (668)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (668)
+.+++++|.+.+...... +.+|..---| + ..
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n--i----------~~----------------------------------- 123 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTN--I----------QQ----------------------------------- 123 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhh--H----------HH-----------------------------------
Confidence 788999999888887765 3222110000 0 00
Q ss_pred hCCCCChhhHHHHHHHHHhCCChHHHHHHhhccC----CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHH
Q 005943 195 RGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMP----ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLF 270 (668)
Q Consensus 195 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (668)
.-+|...=+..+..+...|++.++..+++++. ++.. .| +..+|+.++-++++. .|
T Consensus 124 --l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~-~w----------~~d~yd~~vlmlsrS--------Yf 182 (549)
T PF07079_consen 124 --LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKREC-EW----------NSDMYDRAVLMLSRS--------YF 182 (549)
T ss_pred --HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhh-cc----------cHHHHHHHHHHHhHH--------HH
Confidence 00233333456677778888888888877766 1110 01 455555555555442 22
Q ss_pred HHhhh-hhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 005943 271 DQYSS-WAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVT 349 (668)
Q Consensus 271 ~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 349 (668)
-++.+ .+....|+ |.-++-.|.+.=+ .++.-.=..+-|....+..++....-...-....-.++++.-.+
T Consensus 183 LEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 183 LELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 22211 11112222 3333333332111 11110001123444444444433332221100222333333344
Q ss_pred hCCCCccc-hHHHHHHHHHhcCChHHHHHHHccCC--------CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC
Q 005943 350 SGYELDYI-VGSNLIDLYARLGNVKSALELFHRLP--------KKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDV 420 (668)
Q Consensus 350 ~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 420 (668)
.-+.|+.. +...++..+.+ +.+++..+.+.+. +.=..++..++....+.++...|.+.+.-+.-. .|
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp 329 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DP 329 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CC
Confidence 44555433 23334444433 3444433333322 123456777788888888888888877766543 33
Q ss_pred cHHHHHHH-------HHHhc-ccc---chHhHHHHHHHHHHhCCCCchhHHHHHH---HHHHhcCC-hHHHHHHhccCCC
Q 005943 421 NQFIISSV-------LKVCS-CLA---SLRRGKQVHAFCVKRGFEKEDITLTSLI---DMYLKCGE-IDDGLALFKFMPE 485 (668)
Q Consensus 421 ~~~~~~~l-------l~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~~ 485 (668)
+...-.-+ -+..+ ... +...-..+|+......+.. ......++ .-+-+.|. -++|+++++.+.+
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33211111 11111 111 1222223333333322211 11111122 22233343 6677777776653
Q ss_pred ---CCHhHHHHHH----HHHHh---cCChHHHHHHHHHHHHCCCCCCHHH----HHHHHH--HhhcCCCHHHHHHHHHhc
Q 005943 486 ---RDVVSWTGII----VGCGQ---NGRAKEAIAYFQEMIQSRLKPNEIT----FLGVLS--ACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 486 ---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~--~~~~~g~~~~a~~~~~~~ 549 (668)
-|...-|.+. .+|.+ ...+.+-+.+-+-..+.|+.|-... -+.+.+ -+...|++.++.-.-.-+
T Consensus 409 ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 409 FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2333333222 12221 1223333333334445566664432 233333 244577777776654444
Q ss_pred ccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005943 550 KPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWAS 596 (668)
Q Consensus 550 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 596 (668)
. .+.|++.+|..+.-++....++++|.+++.+++ |+...++.
T Consensus 489 ~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 489 T---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred H---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 4 567788888888888888888888888888875 45555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.021 Score=47.80 Aligned_cols=106 Identities=14% Similarity=0.244 Sum_probs=90.9
Q ss_pred ccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--C
Q 005943 550 KPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM---PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE--D 624 (668)
Q Consensus 550 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~ 624 (668)
.++...-|+...--.|..++.+.|+..+|...|++. .+.-|......+.++....+++..|...++.+.+..|. +
T Consensus 80 ~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 80 TEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 333356788888888999999999999999999987 35568888888999999999999999999999997765 5
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+.....+++.|...|++++|...++...+--
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 6788899999999999999999998877643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.023 Score=45.17 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=74.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhh
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPNE--ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLG 570 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 570 (668)
+..++-..|+.++|+.+|++..+.|+.... ..+..+...+...|++++|..++++...++.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456677889999999999999998877653 3677788889999999999999999886421111 2233334556788
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005943 571 QAGCFDDAEQLIAEMPFKPDKTIWASMLKAC 601 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 601 (668)
..|+.++|++.+-..- .++...|.--+..|
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 8999999998775441 12333444444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0021 Score=40.64 Aligned_cols=42 Identities=19% Similarity=0.419 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
.++..+..++.+.|++++|+++++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999998888764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.012 Score=54.65 Aligned_cols=96 Identities=11% Similarity=0.040 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHH
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDK----TIWASMLKACETHNNTKLVSIIAEQLLATSPED---PSKYVMLS 632 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 632 (668)
.|...+..+.+.|++++|...|+.. ...|+. ..+..+...+...|+++.|...|+.+.+..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556677777666665 222332 344555566666777777777777777665553 44445556
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 NVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.++...|++++|.++++.+.+.-+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCc
Confidence 666667777777777766665544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.33 Score=46.52 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=63.3
Q ss_pred HHHHhcCChHHHHHHhccCCC-------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcC
Q 005943 465 DMYLKCGEIDDGLALFKFMPE-------RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHA 536 (668)
Q Consensus 465 ~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~ 536 (668)
+-..+.|++..|.+.|.+... ++...|.....+..+.|+..+|+.-.++..+ +.|... .|..-..++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHH
Confidence 345678899999999988764 3555677777778888999999998888776 444432 455555567778
Q ss_pred CCHHHHHHHHHhcccc
Q 005943 537 GLVEEAWTIFTSMKPE 552 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~ 552 (668)
++|++|.+-++...+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8899999888887743
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0065 Score=59.16 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKT----IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
+...++.+..+|.+.|++++|+..|++. ...|+.. +|..+..+|...|+.++|++.++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 3567777777888888888888887775 5556533 4777777777888888888888887776322 221111
Q ss_pred H--HHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 N--VYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~--~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
. .+....+.++..++++.+++-|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 12233444566777777776665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.096 Score=48.21 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeee----HHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVAL----WNSMISGYVLNEQNEEAITLLSHIHSSG 314 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~g 314 (668)
+...-.....+...|++++|.+.|+.+.. ..|+... .-.+..++.+.+++++|...+++..+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33444556667789999999999999976 4454322 2345678899999999999999998764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.12 Score=52.20 Aligned_cols=252 Identities=13% Similarity=0.094 Sum_probs=131.1
Q ss_pred CCCchHHHHHHHHhccCChHHHHHH---------HHHHHHcCCCCCchHhhHHHhhhhhcCChh-HHHHhhhhhhhhhcC
Q 005943 103 PNGFMYSAVLKACSLSGDLDLGRLI---------HERITREKLEYDTVLMNTLLDMYVKCGSLT-RKLFDQYSNWAASAY 172 (668)
Q Consensus 103 p~~~~~~~ll~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~~~~~~~~~~~~~~~ 172 (668)
|....+.+=+--+...|.+++|.++ |+.+... ..+.-.++..-++|.+..+.. .++.-+
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~E--------- 622 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISE--------- 622 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHH---------
Confidence 4444555555666677777777554 2222211 122334455555666655544 333222
Q ss_pred CCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcch--HHHHhhhcccCchhhH
Q 005943 173 GNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVS--WTGIIVGCFECSCFTL 250 (668)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 250 (668)
++++.++|-.|+.... ...++-.|++.+|-++|.+-...+... |+ |...
T Consensus 623 ----------------L~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyT---------DlRM- 673 (1081)
T KOG1538|consen 623 ----------------LEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYT---------DLRM- 673 (1081)
T ss_pred ----------------HHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHH---------HHHH-
Confidence 3456778887876543 345666788888888887665443211 11 0000
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHH------HHhCCCCC---CHHH
Q 005943 251 SALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSH------IHSSGMCI---DSYT 321 (668)
Q Consensus 251 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~g~~p---~~~t 321 (668)
-..+.-+...|..++-..+.++-.++.. |+.--.+....+...|+.++|..+.-+ +.+-+-+. +..+
T Consensus 674 FD~aQE~~~~g~~~eKKmL~RKRA~WAr----~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~ 749 (1081)
T KOG1538|consen 674 FDYAQEFLGSGDPKEKKMLIRKRADWAR----NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREP 749 (1081)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHhh----hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhH
Confidence 1223345555555555544444333322 222223444556677777777765322 22222222 3334
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcC
Q 005943 322 FTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHG 401 (668)
Q Consensus 322 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 401 (668)
...+..-+.+...+ ..|.++|..|-+. ..++......++|++|..+-++.++--...|-.-.+-++...
T Consensus 750 l~~~a~ylk~l~~~--gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSP--GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhcccc--chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 44444444455555 6677777665432 347777888899999999888887643333333334444444
Q ss_pred CcHHHHHH
Q 005943 402 LNSLAYLL 409 (668)
Q Consensus 402 ~~~~a~~~ 409 (668)
++++|.+.
T Consensus 819 rFeEAqkA 826 (1081)
T KOG1538|consen 819 RFEEAQKA 826 (1081)
T ss_pred hHHHHHHH
Confidence 44444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0076 Score=43.45 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=48.2
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 005943 567 DLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVML 631 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 631 (668)
..|.+.+++++|.++++.+ ...| +...|......+.+.|++++|.+.++++.+..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 5677788888888888877 3334 455666677778888888888888888888888776555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0036 Score=45.90 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhc---CC-C---CchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLAT---SP-E---DPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.+++.+...+...|++++|+..++++++. .+ + -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35667777788888888888888887763 12 2 245677888888888888888888887654
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=1.1 Score=46.66 Aligned_cols=137 Identities=13% Similarity=-0.001 Sum_probs=84.5
Q ss_pred HhCCCCChhhHH-----HHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCC---HHH
Q 005943 194 KRGFEKEDVTLT-----SLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNV---LCE 265 (668)
Q Consensus 194 ~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~---~~~ 265 (668)
..|+..+..-|. .+|+-+...+.+..|+++-+.+..|... ...+|....+-+.+..+ .+-
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~------------~~~Vl~~Wa~~kI~~~d~~d~~v 492 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ------------GDRVLLEWARRKIKQSDKMDEEV 492 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc------------ccHHHHHHHHHHHhccCccchHH
Confidence 456666555554 4577888899999999999988866533 14566677777776632 233
Q ss_pred HHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhccccchHHHH
Q 005943 266 ARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMC----IDSYTFTSALKACINLLNFNSRFAL 341 (668)
Q Consensus 266 A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~~~a~ 341 (668)
+..+-+++.. ..-...+|..+.......|+.+-|..+++.=...+.. .+-.-+...+.-+...|+. +...
T Consensus 493 ld~I~~kls~----~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~--~Li~ 566 (829)
T KOG2280|consen 493 LDKIDEKLSA----KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDT--DLII 566 (829)
T ss_pred HHHHHHHhcc----cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCc--hhHH
Confidence 3334344411 2245677888888888999999999887643222211 1223344555566666666 5555
Q ss_pred HHHHHHH
Q 005943 342 QVHGLIV 348 (668)
Q Consensus 342 ~~~~~~~ 348 (668)
.++-++.
T Consensus 567 ~Vllhlk 573 (829)
T KOG2280|consen 567 QVLLHLK 573 (829)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.11 Score=46.55 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCChhhHHH
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPS---KYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 646 (668)
+..-|.+.|.+..|..-++.+++..|+++. .+..++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 344588999999999999999999999754 46778888999999885543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.016 Score=54.84 Aligned_cols=129 Identities=11% Similarity=0.012 Sum_probs=78.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHh---cccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-------C-CCCCHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTS---MKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-------P-FKPDKT 592 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 592 (668)
.|..|...|.-.|+++.|+...+. +.+++|-+. ....+..+.+++.-.|+++.|.+.++.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666667777777665442 222333332 2455667777777778888877777643 1 112344
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATS------PEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
+..++.+.|.-..++++|+.+..+=+.+- -....++-.|+.++...|..++|....+.-..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55566677766677777777776644411 12345666778888888888888777665443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.97 Score=43.96 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=62.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA 278 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 278 (668)
-|..+|-.||.-+...|.+++..+.+++|..|-+.. +.+|..-+++-....++...+.+|.+...
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~------------~~aw~ly~s~ELA~~df~svE~lf~rCL~--- 104 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM------------EHAWRLYMSGELARKDFRSVESLFGRCLK--- 104 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc------------cHHHHHHhcchhhhhhHHHHHHHHHHHHh---
Confidence 366789999999999999999999999999877653 56777777777778888888888888755
Q ss_pred cCCCCeeeHHHHHHHH
Q 005943 279 SAYGNVALWNSMISGY 294 (668)
Q Consensus 279 ~~~~~~~~~~~li~~~ 294 (668)
...+...|...+.-.
T Consensus 105 -k~l~ldLW~lYl~YI 119 (660)
T COG5107 105 -KSLNLDLWMLYLEYI 119 (660)
T ss_pred -hhccHhHHHHHHHHH
Confidence 334556666655543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.19 Score=44.96 Aligned_cols=137 Identities=10% Similarity=0.079 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHH-----H
Q 005943 389 AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTS-----L 463 (668)
Q Consensus 389 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 463 (668)
..+.++.+..-.|.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...+++..+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566666677788888888999999888888888888999999999999999999997776533333333333 3
Q ss_pred HHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFL 527 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 527 (668)
...|.-.+++..|...+.++.. .|+..-|.-.-+....|+..+|++.++.|.+. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 3445567788888888877764 34555555555556678888888888888884 55554433
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=2.1 Score=45.82 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=40.9
Q ss_pred HHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Q 005943 361 NLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCL 435 (668)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 435 (668)
..+..+.+.+++....+.+..- ..+...-.....+....|+.++|....+.+=..| ...+..+..++..+.+.
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Confidence 3445556677777777733232 2345555566677777788777766666654443 22334444555444433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.022 Score=47.93 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
....++..+...|+++.|....++++..+|-+...|..++.+|...|+..+|.++++++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999999999999999999999999999998863
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.3 Score=43.18 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhH-HHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEH-YYCM 565 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l 565 (668)
...|.+.+..-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+-=... -||... -.-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456666666666666777777777777766 4556666666666443 56667777777665532 233222 3345
Q ss_pred HHHhhhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 566 VDLLGQAGCFDDAEQLIAEM--PFKPD--KTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+..+...++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++....|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 55666677777777777744 11122 4467777777777777777777777777777764
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.85 Score=41.16 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=48.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPS---KYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
+..-|.+.|.+..|..-++++++..|+.+. .+..+..+|...|..++|.+.-+-+....++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 334588999999999999999998776544 4566777899999999999988777655553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.23 Score=44.35 Aligned_cols=135 Identities=9% Similarity=-0.041 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHH-----H
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHY-----Y 563 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~ 563 (668)
..-++++..+.-.|.+.-.+..+++.++..-+.++.....+.+.-.+.||.+.|...|++..+. .-..+.... .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 4456677777778888888999999988655556677888888889999999999999977654 223333333 3
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMPF-K-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
.....|.-++++.+|...+.+... . .++...|.-.-...-.|+...|.+..+.+++..|..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 334456667788888888887742 2 244444444444445678888999999998888774
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.16 Score=46.67 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcC---ChHHHHHHHHhC-CCCC-CHHHH
Q 005943 520 KPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAG---CFDDAEQLIAEM-PFKP-DKTIW 594 (668)
Q Consensus 520 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 594 (668)
+-|...|..|..+|...|+.+.|...|.+..+- ..++...+..+..++.... ...++..+|+++ ...| |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 446678999999999999999999999988742 2335677777777665433 456788899888 3344 56666
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
..+...+...|++.+|...|+.+++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6677778999999999999999999877754
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.086 Score=50.39 Aligned_cols=95 Identities=7% Similarity=-0.053 Sum_probs=77.8
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
.++..+.-+|.+.+++.+|++.-++. . .++|....---..++...|+++.|+..|+++++++|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46777888999999999999888776 3 345777777778889999999999999999999999999888888887776
Q ss_pred cCChhhH-HHHHHHHHhc
Q 005943 638 LGMWDSL-SKVRKAGKKL 654 (668)
Q Consensus 638 ~g~~~~a-~~~~~~~~~~ 654 (668)
...+++. .++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6655554 7888888754
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.012 Score=42.98 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=36.0
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC-----CC---CC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEMP-----FK---PD-KTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
.+++.+..+|...|++++|++.+++.- .. |+ ..++..+...+...|++++|++.++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666665440 11 22 34566666677777777777777777665
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.035 Score=52.94 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..++..+...+.+.+++..|++...+++..+|+|...++.-+.+|...|+++.|+..|+++.+..+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 446777888899999999999999999999999999999999999999999999999999998776
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.1 Score=42.00 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHh
Q 005943 519 LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLL 569 (668)
Q Consensus 519 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 569 (668)
+.|+..+..+++.+|+..|++..|.++++...+.++++.+..+|..|++-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456666666666666666777777776666666666666666666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.083 Score=47.87 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=45.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM----PFKP-DKTIWASMLK 599 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~ 599 (668)
|+.-+. +.+.|++..|...|....+.+--.+ ....+--|.+++...|++++|..+|..+ +..| -+..+-.+..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444333 2344555666555555553210000 1233334555555555555555555444 1111 1233444444
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
...+.|+.++|..+++++.+..|..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 445555555555555555555555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.2 Score=40.98 Aligned_cols=146 Identities=18% Similarity=0.146 Sum_probs=75.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChH
Q 005943 497 GCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 497 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 576 (668)
.....|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..+-.+ --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 3455666777777666666542 222334555666666777777777776666532 11111112223344444444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCChhhH
Q 005943 577 DAEQLIAEMPFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLAT--SPEDPSKYVMLSNVYATLGMWDSL 644 (668)
Q Consensus 577 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a 644 (668)
+...+-.+....| |...-..+...+...|+.+.|.+.+=.+++. .-.+...-..++.++.-.|.-+.+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444443334 4444455555566666666666555555542 233455555666666555544433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.092 Score=47.28 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=86.5
Q ss_pred hhHHHHhhhhcC--CCChhHHHHHHHHHhc-----CCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccC-------
Q 005943 54 LNDAHKLFDEMA--RKNIVSWTTMVTAYTS-----NKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSG------- 119 (668)
Q Consensus 54 ~~~a~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~------- 119 (668)
+...+..|+..+ +.|-.+|-+.+..+.. .+.++-....++.|.+.|+. -|..+|+.||+.+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVe-rDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVE-RDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcch-hhHHHHHHHHHhCcccccccHHHH
Confidence 344455666665 5788888888888753 35677777788999999988 99999999998876542
Q ss_pred ---------ChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh---HHHHhhhhh
Q 005943 120 ---------DLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT---RKLFDQYSN 166 (668)
Q Consensus 120 ---------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~---~~~~~~~~~ 166 (668)
+-+-+..++++|...|+.||..+--.|+.++++.+... .++.-.|+.
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 33457889999999999999999999999999988777 334344444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.099 Score=48.88 Aligned_cols=194 Identities=11% Similarity=0.069 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHh-------ccCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH---HH
Q 005943 459 TLTSLIDMYLKCGEIDDGLALF-------KFMPER--DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS-RLKPNE---IT 525 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~-------~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~ 525 (668)
+|..+.++.++.|.+++++..- .+..+. -...|..+.+++-+..++.+++.+-+.-... |..|.. ..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 3444555566666665554321 111111 1235556666666666777777766554443 333321 23
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCC--CC--ChhHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCHH--
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGL--EP--HLEHYYCMVDLLGQAGCFDDAEQLIAEM-------PFKPDKT-- 592 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~-- 592 (668)
..++..++.-.+.++++++.|+...+-..- +| ...++..|...|.+..++++|+-+..+. +.+.-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 344566777777888888888876532111 12 2467888899999999998877665544 2221111
Q ss_pred ---HHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCCC----chhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 593 ---IWASMLKACETHNNTKLVSIIAEQLLAT--SPED----PSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 593 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+...+..++...|..-.|.+..+++.++ ...| ......++++|...|+.|.|..-++...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2234445678889999999999998773 2333 4455678899999999998887776553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.081 Score=44.48 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHH-----cCCCCCchHhh
Q 005943 71 SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITR-----EKLEYDTVLMN 144 (668)
Q Consensus 71 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 144 (668)
....++..+...|+++.|..+.+.+.... + -+...|..+|.++...|+...|.++++.+.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-P-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-T-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45667777888999999999999999987 3 5778999999999999999999999988764 48888776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.61 Score=42.88 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=91.2
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhhCCH
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWAS---MLKACETHNNT 607 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~ 607 (668)
......|+..+|...|+..... .+-+...-..|+++|...|+.+.|..++..++..-...-+.. -+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3456789999999999988743 223467778899999999999999999999975544444433 23334444333
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 608 KLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 608 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+.. -+++-...+|+|...-..++..|...|+.++|.+.+=.+.++..
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3222 24555667999999999999999999999999999888876644
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.54 E-value=4.4 Score=44.90 Aligned_cols=144 Identities=16% Similarity=0.118 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL 538 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 538 (668)
.+.-.++.--+.|.+.+|+.++..-.+.-...|.+...-+.....+++|.-.|+..-+. .-.+.+|...|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhcc
Confidence 34444555556677777777665433333334555555556677788877777654331 234667788899
Q ss_pred HHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 005943 539 VEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLL 618 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 618 (668)
|.+|..+..++.. +..--..+-..|+.-+...+++-+|.++..+....|.. .+..+++...+++|..+.....
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 9999888877752 22222333467888888888888888888777434322 3334455556666665555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.26 Score=48.49 Aligned_cols=142 Identities=9% Similarity=0.075 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHHHC-CCCCCHH-HHHHHHHHhhc---------CCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhh
Q 005943 503 RAKEAIAYFQEMIQS-RLKPNEI-TFLGVLSACRH---------AGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLG 570 (668)
Q Consensus 503 ~~~~a~~~~~~m~~~-g~~p~~~-~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 570 (668)
..+.|+.+|.+.... .+.|+.. .|..+..++.. ..+..+|.+.-++.. .+.| |......+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 467788889888822 2567644 56666555432 123345555555555 4455 5667777777777
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh--HHHHHHHHHhcCChhhHHH
Q 005943 571 QAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSK--YVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~a~~ 646 (668)
-.|+++.|...|++. ...|| ...|......+.-.|+.++|.+.++++.++.|....+ ....++.|+..+- ++|++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~-~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPL-KNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCch-hhhHH
Confidence 778888888888887 45564 3455555556677888999999999988888886543 3344446766665 45555
Q ss_pred HH
Q 005943 647 VR 648 (668)
Q Consensus 647 ~~ 648 (668)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 44
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.9 Score=40.38 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=57.7
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHh----cCCCCchh
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEMP-------FKPDK-TIWASMLKACETHNNTKLVSIIAEQLLA----TSPEDPSK 627 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~ 627 (668)
..+....+.|.+..++++|...|.+-. .-|+. ..|-..|-.+.-..|+..|+..++.-.+ ..|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 345555567777777777776665542 11222 2344555556666788888888888655 45777777
Q ss_pred HHHHHHHHHhcCChhhHHHHHH
Q 005943 628 YVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 628 ~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
...|+.+| ..||.|++.+++.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHHc
Confidence 88887765 5678888877754
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.16 Score=39.97 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=48.5
Q ss_pred HhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCCh
Q 005943 568 LLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED----PSKYVMLSNVYATLGMW 641 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 641 (668)
++...|+.+.|++.|.+. ..- .....||.-..++.-.|+.++|..=+++++++..+. ...|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344556666666666544 222 244456666666666666666666666666643221 12344455556666666
Q ss_pred hhHHHHHHHHHhcCC
Q 005943 642 DSLSKVRKAGKKLGE 656 (668)
Q Consensus 642 ~~a~~~~~~~~~~~~ 656 (668)
|.|+.-|+.....|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 666666666555554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.3 Score=38.56 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=90.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMV 566 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 566 (668)
+..||-+.--+...|+++.|.+.|+...+. .|.. .+...-.-++.-.|+++-|.+-+...-+.-.-+|=...|--+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 346777777778888888888888888774 4432 2333333345567888888776555543312223233333222
Q ss_pred HHhhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhc
Q 005943 567 DLLGQAGCFDDAEQLI-AEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED-------PSKYVMLSNVYATL 638 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 638 (668)
...-++.+|..-+ ++.. .-|..-|-..+..+.-. +.. .+.+++++.+...++ ..+|.-|++.+...
T Consensus 177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2233555665443 3332 23444444433332211 111 123444444433222 45788899999999
Q ss_pred CChhhHHHHHHHHHhcCC
Q 005943 639 GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 639 g~~~~a~~~~~~~~~~~~ 656 (668)
|+.++|..+++-....++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999987765544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.56 Score=41.98 Aligned_cols=67 Identities=16% Similarity=-0.016 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSS 313 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 313 (668)
....-.....+...|++++|.+.|+.+...-.+..--....-.++.++.+.|+++.|...+++....
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445556667888999999999999997632211112334556778899999999999999998764
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.2 Score=45.26 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=82.8
Q ss_pred hHHHHHHHccCC--CCChhhHHHHHHHHHhc-----CCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc--------
Q 005943 372 VKSALELFHRLP--KKDVVAWSGLIMGCTKH-----GLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA-------- 436 (668)
Q Consensus 372 ~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-------- 436 (668)
+-..++.|.... ++|..+|-+.+..|... +..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 344566677766 56888888888777653 567777888899999999999999999999887643
Q ss_pred --------chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 005943 437 --------SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEI 473 (668)
Q Consensus 437 --------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (668)
+-+-+..++++|...|+.||..+-..++++|++.+-+
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3456788999999999999999999999999987754
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.3 Score=36.73 Aligned_cols=127 Identities=9% Similarity=0.072 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhh
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLG 570 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 570 (668)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ .....+.++. ..+.......++.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3445666666667777777777777665 345556677777776543 3344444442 122233344566667
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 571 QAGCFDDAEQLIAEMPFKPDKTIWASMLKACETH-NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
+.+.++++.-++.+++. +...+..+... ++++.|.+++.+ +.++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77777777777777752 22233333333 677777777665 3455567666665543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.6 Score=42.40 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=107.1
Q ss_pred chHHHHHHHHcCCChhHHHHhhhhcCCC-------ChhHHHHHHHHHhc---CCChhhHHHHHHHHHhcCCCCCCCchHH
Q 005943 40 TGNNLLSMYADFTSLNDAHKLFDEMARK-------NIVSWTTMVTAYTS---NKRPNWAIRLYNHMLEYGSVEPNGFMYS 109 (668)
Q Consensus 40 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 109 (668)
+...++-+|-...+++...++.+.+... ....-....-++.+ .|+.++|++++..+...... ++..+|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-PDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC-CChHHHH
Confidence 3445555788899999999999999763 12222234445666 89999999999996665545 8888998
Q ss_pred HHHHHHhc---------cCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhhhhhhhcCCCchhh
Q 005943 110 AVLKACSL---------SGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVALW 178 (668)
Q Consensus 110 ~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~ 178 (668)
.+...|-. ...++.|...+.+.... .||...-.-+...+...|... ..-...+.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~------------- 286 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIG------------- 286 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHH-------------
Confidence 88766642 22456666666655443 354433222333333334322 11111111
Q ss_pred hhhhhcchhhHHHHHHhCC---CCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchH
Q 005943 179 NSMLSGGKQVHAFCVKRGF---EKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSW 235 (668)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 235 (668)
..+-....+.|. ..+-..+.+++.++.-.|+.++|.+..+.|....+..|
T Consensus 287 -------~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 287 -------VKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred -------HHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 111112223333 24556678999999999999999999999997766655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=2.5 Score=38.70 Aligned_cols=192 Identities=17% Similarity=0.184 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMP-----ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS- 531 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 531 (668)
..+......+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 334444444455555555544444332 12233344444444555555555555555554322221 11111112
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCC----ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhh
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEP----HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD--KTIWASMLKACETH 604 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~ 604 (668)
.+...|+++.|...+++... ..| ....+......+...++.+++...+... ...++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 45555666666666555531 122 1222333333344555566666555555 22222 34455555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
++++.|...+.......|.....+..+...+...|.++++...+....+
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666665555444444555554444555665555555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.12 Score=50.66 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCCh----hHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 522 NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL----EHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 522 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+...++.+..+|...|++++|+..|++.. .+.|+. ..|..+..+|...|+.++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44577888888888888888888888877 456763 34778888888888888888888877
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.6 Score=38.08 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHhhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 566 VDLLGQAGCFDDAEQLIAEMP----FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
.....+.|++++|.+.|+.+. ..| ....-..++.++.+.++++.|...+++.++++|.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344456688888888888772 222 3344556777888888888888888888888887654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.24 Score=39.85 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcc--------------cccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC----
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMK--------------PEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM---- 585 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 585 (668)
.++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 445555555555555555555554332 11133445555555555555555555555554443
Q ss_pred CCCCCHHHHHHHHH
Q 005943 586 PFKPDKTIWASMLK 599 (668)
Q Consensus 586 ~~~p~~~~~~~l~~ 599 (668)
+++-+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 23333444544444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.62 Score=37.99 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=59.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKPN---EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ 571 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 571 (668)
.....+.|++++|.+.|+.+..+ .+.. ...-..++.++.+.+++++|...+++..+-+--.|+ .-|...+.++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 33445567777777777777665 1211 234555666777777777777777777643222222 234444444333
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 572 AGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 572 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
-...+. .|..+ .... ..+....|..-|+.+++..|++.
T Consensus 95 ~~~~~~---~~~~~~~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEG---SLQSFFRSDR-------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhh---HHhhhccccc-------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 222211 11111 1111 12235578888888888888874
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.90 E-value=1.3 Score=45.41 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=95.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHhhc----CCCHHHHHHHHHhcccccCCCCChhHH
Q 005943 493 GIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNE-----ITFLGVLSACRH----AGLVEEAWTIFTSMKPEYGLEPHLEHY 562 (668)
Q Consensus 493 ~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~ 562 (668)
.++....-.||-+.+++.+.+..+.+ +.-.. ..|..++..++. ..+.+.|.++++.+.++ -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444455566666666665544421 21111 123333333332 45677788888888743 5665555
Q ss_pred HH-HHHHhhhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH-HHHH
Q 005943 563 YC-MVDLLGQAGCFDDAEQLIAEMPF-K-----PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM-LSNV 634 (668)
Q Consensus 563 ~~-l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~ 634 (668)
.. -.+.+...|+.++|.+.|++.-. . .....+.-+...+.-..++++|...+.++.+...-+..+|.- .+-.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 43 34566777888888888886521 1 122334445555667788999999898888877666655553 4444
Q ss_pred HHhcCCh-------hhHHHHHHHHHh
Q 005943 635 YATLGMW-------DSLSKVRKAGKK 653 (668)
Q Consensus 635 ~~~~g~~-------~~a~~~~~~~~~ 653 (668)
+...|+. ++|.+++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6677887 778888777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.31 Score=44.32 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHH
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE----ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYC 564 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 564 (668)
.|+.-+.. .+.|++..|...|...++.. |+. ..+-.|..++...|++++|..+|..+.+++.-.|. +..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 35544443 34556777777777776642 221 23555666777777777777777777665444443 466666
Q ss_pred HHHHhhhcCChHHHHHHHHhC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~ 585 (668)
|..+..+.|+.++|...|+++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 666777777777777777666
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.41 Score=48.29 Aligned_cols=157 Identities=11% Similarity=0.059 Sum_probs=94.7
Q ss_pred HHHHhcCChHHHHHHhc--cCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHH
Q 005943 465 DMYLKCGEIDDGLALFK--FMP-ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEE 541 (668)
Q Consensus 465 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 541 (668)
+...-.++++++.++.. ++. .-.....+.++.-+-+.|..+.|+++.++-. .-.....+.|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 34445678888655543 111 1123447777888888888888887653321 12334457888888
Q ss_pred HHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 542 AWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 542 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
|.++.++. ++...|..|.+...+.|+++-|.+.+++.+ -|..++-.|...|+.+.-.++.+.+....
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 87764433 356788999999999999999999998886 26667777777888877666665555433
Q ss_pred CCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 622 PEDPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 622 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
- +.....++.-.|+.++..++|.+.
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 233333455668888888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.45 E-value=5.3 Score=39.54 Aligned_cols=150 Identities=9% Similarity=0.003 Sum_probs=72.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhcCCCHHHHHHHHHhcccc-cCCCCChhHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP---NEITFLGVLSACRHAGLVEEAWTIFTSMKPE-YGLEPHLEHY 562 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~ 562 (668)
...+|..++..+.+.|.++.|...+.++...+..+ .+.....-....-..|+..+|...++..... ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34456666677777777777777777666532111 1222222334445566666776666665541 1101011111
Q ss_pred HHHHHHhhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhh------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 563 YCMVDLLGQAGCFDDAEQL-IAEMPFKPDKTIWASMLKACETH------NNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
..+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 00000000011222222223333 7888899999999999999888998888877
Q ss_pred Hhc
Q 005943 636 ATL 638 (668)
Q Consensus 636 ~~~ 638 (668)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=7.3 Score=40.50 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHI 310 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 310 (668)
+....-.+.+++...|.-++|.+.|-+. ..| .+.+..|...++|.+|.++-+..
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~------s~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRR------SLP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhc------cCc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566777777777777777776655 223 24456677777777777665543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.64 Score=38.89 Aligned_cols=86 Identities=13% Similarity=0.060 Sum_probs=44.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
+...|++++|..+|+-+.-.+ .-|..-+..|..++-..++++.|...|.....- . .-|+..+-....+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 345566666666666555432 112233444444555556666666665554421 1 1233334445566666666666
Q ss_pred HHHHHHhCC
Q 005943 578 AEQLIAEMP 586 (668)
Q Consensus 578 A~~~~~~~~ 586 (668)
|...|+...
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 666665553
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.16 Score=29.62 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 34455555666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.094 Score=33.00 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
|.++..++.+|.+.|++++|+++++++.+..+.++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 35788999999999999999999999999877443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.2 Score=42.36 Aligned_cols=143 Identities=9% Similarity=0.036 Sum_probs=99.1
Q ss_pred ChHHHHHHhccCC---C--CC-HhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 005943 472 EIDDGLALFKFMP---E--RD-VVSWTGIIVGCGQN---------GRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHA 536 (668)
Q Consensus 472 ~~~~A~~~~~~~~---~--~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 536 (668)
..+.|..+|.+.. . |+ ...|..+..++... .+..+|.++-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888898877 3 33 44565555544322 24556778888888864 55677777777777888
Q ss_pred CCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHh-CCCCCCH---HHHHHHHHHHHhhCCHHHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAE-MPFKPDK---TIWASMLKACETHNNTKLVS 611 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~---~~~~~l~~~~~~~~~~~~a~ 611 (668)
++.+.|...|++.. .+.|| ...|........-.|+.++|.+.+++ +...|.. ......+..|+.+ -.+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999988 67887 55666666677778999999999998 4666643 3344444456554 567777
Q ss_pred HHHHHHHh
Q 005943 612 IIAEQLLA 619 (668)
Q Consensus 612 ~~~~~~~~ 619 (668)
.+|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77765443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.8 Score=35.96 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHhhcc
Q 005943 202 VTLTSLIDMYLKCGEIDDGLALFNFM 227 (668)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~~ 227 (668)
.....+++.|.+.+.++++.-++..+
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 33444566666666666666666554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.84 E-value=2.4 Score=39.62 Aligned_cols=176 Identities=9% Similarity=0.018 Sum_probs=109.5
Q ss_pred hcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHhhcCCCHHH
Q 005943 469 KCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLG----VLSACRHAGLVEE 541 (668)
Q Consensus 469 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~g~~~~ 541 (668)
-.|+..+|-..++++.+ .|..++.-.=.+|..+|+.+.-...+++.... ..|+..+|.. +.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35666666666777664 36677777778888888888888888887764 2455443332 2334567888888
Q ss_pred HHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhhCCHHHHHHHH
Q 005943 542 AWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPD------KTIWASMLKACETHNNTKLVSIIA 614 (668)
Q Consensus 542 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~ 614 (668)
|++.-++.. .+.| |.-.-.+....+.-.|++.++.+++.+-...-+ ...|....-.+...+.++.|+++|
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 888877766 3333 566677778888888888999888877642211 112222222344567888888888
Q ss_pred HHHH--hcCCCCchhHH---HHHHHHHhcCChhhHHHHH
Q 005943 615 EQLL--ATSPEDPSKYV---MLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 615 ~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~ 648 (668)
++-+ ++..+|..... .+-.+...+-.+.+-.++-
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 7733 35566653332 3333444444444444333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.14 Score=29.85 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
+|..+...+...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566666667777777777777777776665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.75 E-value=5.3 Score=36.43 Aligned_cols=190 Identities=14% Similarity=0.112 Sum_probs=120.8
Q ss_pred HHhccccchHhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCH-hHHHHHHH-HHHhcCCh
Q 005943 430 KVCSCLASLRRGKQVHAFCVKR-GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDV-VSWTGIIV-GCGQNGRA 504 (668)
Q Consensus 430 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~ 504 (668)
..+...+....+...+...... ........+......+...+++..+...+..... ++. ........ .+...|++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (291)
T COG0457 67 LALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDY 146 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCH
Confidence 3333344444444443333321 1233344455555556666667777777666554 221 22222233 67888999
Q ss_pred HHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHH
Q 005943 505 KEAIAYFQEMIQSRLKP----NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAE 579 (668)
Q Consensus 505 ~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 579 (668)
+.|...+++... ..| ....+......+...++.+.+...+...... ... ....+..+...+...++++.|.
T Consensus 147 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 147 EEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred HHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHH
Confidence 999999998855 333 2334444444567788999999999888742 223 3677888888889999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 580 QLIAEM-PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 580 ~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
..+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 223 EYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 988877 34444 445555555555777899999999999998887
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.54 E-value=12 Score=39.95 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=70.5
Q ss_pred chHHHHHHHHcCCChhHHHHhhhhcCCCChhH----HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 005943 40 TGNNLLSMYADFTSLNDAHKLFDEMARKNIVS----WTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKAC 115 (668)
Q Consensus 40 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 115 (668)
....-|..+.+...++.|..+-+.-.- +... ......-+-+.|++++|...|-+-... ..| ..++.-+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kf 407 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKF 407 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHh
Confidence 345567777777788888777655432 2222 223333456788999998777554432 112 3456666
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh
Q 005943 116 SLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT 157 (668)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 157 (668)
........-...++.+.+.|+. +...-..||.+|.+.++.+
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 6777777777888888888864 4555667888888888766
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.40 E-value=13 Score=39.79 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=35.2
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
-++..+.+..+.+.+..+.+..+.. ++..|..++..+++.+..+.-.+...++++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3455566666777777777777533 677777788877777765555555444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.13 E-value=8 Score=36.65 Aligned_cols=17 Identities=12% Similarity=-0.230 Sum_probs=10.7
Q ss_pred HHhhCCHHHHHHHHHHH
Q 005943 601 CETHNNTKLVSIIAEQL 617 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~ 617 (668)
+.+.++++.|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44566777777766644
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.00 E-value=5.6 Score=40.92 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=75.0
Q ss_pred ccchHhHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCChHHHHHHhccCCCC-------CHhHHHHHHHHHHhcCChHH
Q 005943 435 LASLRRGKQVHAFCVKRGFEKEDITLT-SLIDMYLKCGEIDDGLALFKFMPER-------DVVSWTGIIVGCGQNGRAKE 506 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~ 506 (668)
..+.+.+.++++.+.+. -|+...+. .-...+...|++++|++.|++.... ....+--+.-.+....+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34567777777777665 34544443 2346667789999999999975531 22334455666778889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-hhcCCCH-------HHHHHHHHhcc
Q 005943 507 AIAYFQEMIQSRLKPNEITFLGVLSA-CRHAGLV-------EEAWTIFTSMK 550 (668)
Q Consensus 507 a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~-------~~a~~~~~~~~ 550 (668)
|.+.|..+.+.. .-+..+|..+..+ +...|+. ++|.++|.+..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999999853 3344555555543 3456666 77777777664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.19 Score=29.84 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888999999999999888844
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.90 E-value=17 Score=40.59 Aligned_cols=27 Identities=26% Similarity=0.259 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
-...|+.++...|+.+.|.++-+...+
T Consensus 1186 E~~~Ll~~l~~~g~~eqa~~Lq~~f~e 1212 (1265)
T KOG1920|consen 1186 ELKRLLEVLVTFGMDEQARALQKAFDE 1212 (1265)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 456677788899999998887655543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.83 Score=38.08 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=48.4
Q ss_pred hHHHHHHHHh---hhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 005943 560 EHYYCMVDLL---GQAGCFDDAEQLIAEM-PFKPDKTIWASML-KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNV 634 (668)
Q Consensus 560 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 634 (668)
.+...|++.+ .+.++.+++..+++.+ ...|.......+- ..+.+.|++.+|..+++.+.+..|..+..-..++..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444444433 4556777777777776 2445443333222 224577778888888888777777766666666666
Q ss_pred HHhcCC
Q 005943 635 YATLGM 640 (668)
Q Consensus 635 ~~~~g~ 640 (668)
+...||
T Consensus 88 L~~~~D 93 (160)
T PF09613_consen 88 LYALGD 93 (160)
T ss_pred HHHcCC
Confidence 666665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.37 Score=38.00 Aligned_cols=57 Identities=16% Similarity=0.031 Sum_probs=52.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
..++...|+.+.|++.|.+++.+-|..++.|..-+.++.-.|+.++|..-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 345778999999999999999999999999999999999999999999999988775
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.47 Score=40.59 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=80.2
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEPH-----LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACET 603 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 603 (668)
.-+.+.|++++|..-|.+... -+++. ...|..-..++.+.+.++.|++--.+. .+.|. .....--..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 347789999999999998884 33333 234555556778888888888776655 44442 2222223345778
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHH--HHHHHHHhcCC
Q 005943 604 HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLS--KVRKAGKKLGE 656 (668)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~--~~~~~~~~~~~ 656 (668)
..+++.|++=|+++++.+|....+-...+++--......+.. +++.++++.|-
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN 235 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGN 235 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999988766666665543333333332 34555555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.64 E-value=7.8 Score=35.24 Aligned_cols=83 Identities=13% Similarity=-0.052 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005943 248 FTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALK 327 (668)
Q Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 327 (668)
..+..-+..-.+.|++++|.+.|+.+..+....+-...+--.++.++.+.++++.|+..+++....-..-...-|..-|.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 33444444567789999999999999763222212333445566788899999999999999776533223334444455
Q ss_pred HHH
Q 005943 328 ACI 330 (668)
Q Consensus 328 ~~~ 330 (668)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.86 Score=43.69 Aligned_cols=127 Identities=13% Similarity=0.053 Sum_probs=83.8
Q ss_pred HHHHHHHHhccccchHhHHHHHHHH----HHhCCC-CchhHHHHHHHHHHhcCChHHHHHHhccCC-------CC--CHh
Q 005943 424 IISSVLKVCSCLASLRRGKQVHAFC----VKRGFE-KEDITLTSLIDMYLKCGEIDDGLALFKFMP-------ER--DVV 489 (668)
Q Consensus 424 ~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~ 489 (668)
.|..+-+.|.-.|+++.|....+.- .+.|-. .....+..+.+++.-.|+++.|.+.|.... .. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555666678888888775532 233422 233466778888888899999988877533 22 234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQ----SR-LKPNEITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
+..+|..+|.-..++++|+.++.+-+. .+ .--....+.+|..+|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 556677888888888899888765432 11 11233567888889999999888887765443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.59 E-value=3.5 Score=41.73 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=69.2
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhH
Q 005943 362 LIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRG 441 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 441 (668)
-.+...++|+++.|.++.+++. +...|..|.....+.|+++-|.+.|.+..+ +..++-.|.-.|+.+..
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3455678899999999887776 667899999999999999999999987642 44555555666666666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 005943 442 KQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKF 482 (668)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 482 (668)
.++.+.....|. ++....++.-.|+.++..+++.+
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666555541 34444445555666666665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.1 Score=41.84 Aligned_cols=159 Identities=11% Similarity=0.008 Sum_probs=118.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhH----HHHHHHHhhhcCC
Q 005943 499 GQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEH----YYCMVDLLGQAGC 574 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~ 574 (668)
.-+|+..+|-..|+++.+. .+.|...+...=++|...|+.+.-...++++... ..||... -..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888999999999886 5667778888888999999999999999998853 3455433 3455567779999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCChhhHHHHH
Q 005943 575 FDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED----PSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 575 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
+++|.+.-++. .+.| |.-.-.++...+...|+.+++.++..+-...-... ...|-..+..+.+.+.++.|.+++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999887 4443 55556667777888999999999888765533321 223446677888999999999999
Q ss_pred HHHHhcCC-CCCc
Q 005943 649 KAGKKLGE-KKAG 660 (668)
Q Consensus 649 ~~~~~~~~-~~~~ 660 (668)
++=.-+.+ ++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 88766555 5544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.49 E-value=4.6 Score=32.25 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 492 TGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 492 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
...+..+...|+-+.-.+++.++.+. -.|++.....+..+|.+.|+..++.+++.+.-++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34455566666666666666666543 2556666666666777777777776666665543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.45 E-value=5.4 Score=33.85 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=87.7
Q ss_pred hhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHH
Q 005943 187 QVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEA 266 (668)
Q Consensus 187 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A 266 (668)
..++.+.+.|+.|+...|..+|+.+.+.|++....++++.-.-+|..+....+-....-++.+ ..-|
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~-------------~Ql~ 81 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPA-------------YQLG 81 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHH-------------HHHH
Confidence 455566778999999999999999999999999999888777666555433332211111111 2234
Q ss_pred HHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHH
Q 005943 267 RKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGL 346 (668)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 346 (668)
.+.+.++. ..+..++..+...|++-+|+++.+..... +...-..++.+....++. ..-..++..
T Consensus 82 lDMLkRL~----------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~--~lf~~V~~f 145 (167)
T PF07035_consen 82 LDMLKRLG----------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDD--QLFYAVFRF 145 (167)
T ss_pred HHHHHHhh----------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 44444442 13567778889999999999988775332 122224567777777766 555566655
Q ss_pred HHHhC
Q 005943 347 IVTSG 351 (668)
Q Consensus 347 ~~~~~ 351 (668)
....+
T Consensus 146 f~~~n 150 (167)
T PF07035_consen 146 FEERN 150 (167)
T ss_pred HHHhh
Confidence 55543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.41 E-value=2.4 Score=35.57 Aligned_cols=130 Identities=12% Similarity=0.160 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChh-HHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLE-HYYCM 565 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l 565 (668)
...|..-+. +.+.+..++|+.-|..+.+.|...-+. .-.-........|+...|...|.++-.+ ...|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARl 136 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARL 136 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHH
Confidence 345555444 356678899999999999876543332 2223334567889999999999999865 3333221 11112
Q ss_pred --HHHhhhcCChHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 566 --VDLLGQAGCFDDAEQLIAEMPFK--P-DKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 566 --~~~~~~~g~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
.-++...|.+++...-++-+... | -...-.+|.-+-.+.|++..|...|+.+..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23456788898888888877322 2 233446677777899999999999999877
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.15 E-value=11 Score=35.76 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHcCCCHHHH---HHHHHHhhhhhhcCCCC-eeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 005943 247 CFTLSALVDMYSNCNVLCEA---RKLFDQYSSWAASAYGN-VALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTF 322 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 322 (668)
..+...++.+|...+..+.. .++++.+.. ..|+ ...+-.-+..+.+.++.+.+.+++.+|...- ......|
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~----e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLES----EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchH
Confidence 45777888889888876654 445555532 3344 4445555777777899999999999998863 2234555
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhCCCCccc
Q 005943 323 TSALKACINLLNFNSRFALQVHGLIVTSGYELDYI 357 (668)
Q Consensus 323 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (668)
..++..+....+.+...+...+..+....+.|...
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 55555554444433356666666666655555443
|
It is also involved in sporulation []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.97 Score=36.94 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=18.3
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
...|++.+|..+++++.+..+..+..-..++..+.-+||
T Consensus 55 i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 55 IARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 345555555555555555444443333344444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.03 E-value=4.2 Score=34.01 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHHHhcccccCCCCChh-HHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEPHLE-HYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
..++.+.+..++..+. -+.|... .-..-...+.+.|++.+|..+|+++
T Consensus 22 ~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred ccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444555555554444 3344321 1112223334445555555555555
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.94 E-value=6.1 Score=39.53 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=27.3
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEM-PFKP---DKTIWASMLKACETHNNTKLVSIIAEQLL 618 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 618 (668)
.+..++.+.|+.++|.+.++++ +..| +......|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3445555555555555555555 2112 12234445555555555555555555543
|
The molecular function of this protein is uncertain. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=12 Score=35.47 Aligned_cols=125 Identities=10% Similarity=-0.008 Sum_probs=53.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC-CHHHHHHHHHhcccccCCCCChhHHHH
Q 005943 486 RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG-LVEEAWTIFTSMKPEYGLEPHLEHYYC 564 (668)
Q Consensus 486 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~ 564 (668)
++...-...+.++.+.++ +.++..+-.+.+ .++...-...+.++.+.+ +.+.+...+..+.. .++..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 333444444444444443 334444444443 233333333333333322 12334444444432 344555555
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
.+.++++.|+. .|...+-+.-..++ .....+.++...|+. +|...+..+.+.+|
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 55556555553 33333322211222 223455555555554 45555666555555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.80 E-value=7.6 Score=38.42 Aligned_cols=51 Identities=2% Similarity=-0.022 Sum_probs=30.1
Q ss_pred HHHHHcCCChhHHHHhhhhcCCC--ChhHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 005943 45 LSMYADFTSLNDAHKLFDEMARK--NIVSWTTMVTAYTSNKRPNWAIRLYNHMLE 97 (668)
Q Consensus 45 l~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 97 (668)
..+..+.|+++...+........ +...|..+... +.++++++...++....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 34556677777766666665542 33344444333 67777777777766654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.37 Score=27.96 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.++..++.++...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4788999999999999999999999887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.56 Score=39.19 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=63.4
Q ss_pred HHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhh
Q 005943 8 EALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNW 87 (668)
Q Consensus 8 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 87 (668)
.++..+.+.+.++...++++.+.+.+...++...+.++..|++.++.+...++++.... .-...+++.|.+.|-++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45677888899999999999999888667788899999999999999999999885443 233445555566666666
Q ss_pred HHHHHHHHH
Q 005943 88 AIRLYNHML 96 (668)
Q Consensus 88 a~~~~~~m~ 96 (668)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.2 Score=41.20 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
++..++..+...|+.+.+...++++...+|-+...|..+..+|...|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445555566666666666666666666666666666666666666666666666666654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.63 Score=43.39 Aligned_cols=98 Identities=16% Similarity=0.041 Sum_probs=66.9
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhC
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHN 605 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~ 605 (668)
-..-|.+.|.+++|+..|.... .+.| +..++..-..+|.+..++..|..--...- .+.-...|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556888999999999998877 5567 77888888888888888876665444331 0111223444444444567
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHH
Q 005943 606 NTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
+..+|.+=++.++++.|.+...-.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHH
Confidence 888888888888899998654433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.48 Score=28.13 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
+|..+...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777778888888888888888554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.50 E-value=6.5 Score=37.40 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=54.6
Q ss_pred hHHHHHHHccCCCC-------ChhhHHHHHHHHHhcCCc----HHHHHHHHHHHHcCCCCcHH--HHHHHHHHhccccc-
Q 005943 372 VKSALELFHRLPKK-------DVVAWSGLIMGCTKHGLN----SLAYLLFRDMINSNQDVNQF--IISSVLKVCSCLAS- 437 (668)
Q Consensus 372 ~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~- 437 (668)
...|..+++.|.+. +-.++..++.. ..++. +.+..+|+.+.+.|+..+.. ..+.++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 34456666666542 22334444332 22332 46778888888878665543 44444444433322
Q ss_pred -hHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 438 -LRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 438 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
..++..+++.+.+.|+++....|..+.-
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4578888899999999888887766543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.93 E-value=26 Score=36.14 Aligned_cols=384 Identities=13% Similarity=0.091 Sum_probs=215.7
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCee-eHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVA-LWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS 324 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 324 (668)
+...++.++.---...+++.+..+++.+.. ..|-.. -|......-.+.|..+.+.++|++-+. |++-+...|..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~----kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS----KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh----hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence 344555555555555556777777777754 444432 344455555678889999999998876 35555555655
Q ss_pred HHHHHHh-ccccchHHHHHHHHHHHHh-CCCC-ccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHh--
Q 005943 325 ALKACIN-LLNFNSRFALQVHGLIVTS-GYEL-DYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTK-- 399 (668)
Q Consensus 325 ll~~~~~-~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-- 399 (668)
.+..+.. .|+. +.....|+..... |... ....|...|.--..++++.....+++++.+-....++.....|.+
T Consensus 119 Y~~f~~n~~~d~--~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 119 YLAFLKNNNGDP--ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHHHhccCCCH--HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHH
Confidence 5554444 3333 6677777776653 4433 445677777777888899999999998887554444444433322
Q ss_pred -c------CCcHHHHHHHHHHHHc----CCCCcHHHHHHHHHHhcc-ccchHhHHHH-----------------------
Q 005943 400 -H------GLNSLAYLLFRDMINS----NQDVNQFIISSVLKVCSC-LASLRRGKQV----------------------- 444 (668)
Q Consensus 400 -~------~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~-~~~~~~a~~~----------------------- 444 (668)
. ...+++.++-...... ...+........+.-... .+..+.+..+
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1 1223333322222210 001111111111111111 1111111111
Q ss_pred -HHHHHHh---CCC----CchhHHHHHHHHHHhcCChHHHHHHhccCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHH
Q 005943 445 -HAFCVKR---GFE----KEDITLTSLIDMYLKCGEIDDGLALFKFMPERD---VVSWTGIIVGCGQNGRAKEAIAYFQE 513 (668)
Q Consensus 445 -~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 513 (668)
++.-.+. .++ +...+|..-+..-.+.|+.+.+.-+|+...-|= ...|-..+.-....|+.+-|..++..
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 1111111 111 233456666666677788888877777766541 12344444444445788877777766
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHH---HHHHhC-CCC
Q 005943 514 MIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAE---QLIAEM-PFK 588 (668)
Q Consensus 514 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~ 588 (668)
..+-.++-.+.+-..-..-+-..|+.+.|..+++.+..+ . |+ ...-.--+....+.|+.+.+. +++... ..+
T Consensus 357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred hhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 665433222222222222245578999999999999864 3 65 333334456667888888887 555444 222
Q ss_pred CCHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 589 PDKTIWASMLKA-----CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 589 p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
-+..+...+..- +.-.++.+.|..++.++.+..|++...|..+.......+
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 222222222221 345679999999999999999999999999988877665
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.75 E-value=58 Score=39.89 Aligned_cols=282 Identities=9% Similarity=-0.008 Sum_probs=146.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHcc-CCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Q 005943 358 VGSNLIDLYARLGNVKSALELFHR-LPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA 436 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 436 (668)
.+..+...|...+++|....+... ..++ ..+ .-|.-....|++..|...|+.+.+.+ ++...+++-++......+
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--sl~-~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADP--SLY-QQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCc--cHH-HHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 344455578888888877776653 2222 222 23334556788999999999887654 233556666666666666
Q ss_pred chHhHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHH--HHHHHhcC--ChHHHHHHH
Q 005943 437 SLRRGKQVHAFCVKRGFEKEDIT-LTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGI--IVGCGQNG--RAKEAIAYF 511 (668)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~ 511 (668)
.++.+....+-..... .+.... ++.=+.+--+.++++....... +.+...|... .....+.. +.-.-....
T Consensus 1498 ~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 6666655444333222 222222 2222444456677776666655 3334444333 23332222 111111233
Q ss_pred HHHHHCCCCC--------C-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC------hhHHHHHHHHhhhcCChH
Q 005943 512 QEMIQSRLKP--------N-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH------LEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 512 ~~m~~~g~~p--------~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~ 576 (668)
+.+.+.-+.| + ...|..++....-..- +.-.+.+. ++.++ ..-|..-+..-....+..
T Consensus 1574 ~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~~~~~l~------~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ 1646 (2382)
T KOG0890|consen 1574 ENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-ENSIEELK------KVSYDEDSANNSDNWKNRLERTQPSFRIK 1646 (2382)
T ss_pred HHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HHHHHHhh------ccCccccccccchhHHHHHHHhchhHHHH
Confidence 3333321111 1 1234444333221111 11111111 22232 111211111111111111
Q ss_pred HHHHHHHh----CCCCC-----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHH
Q 005943 577 DAEQLIAE----MPFKP-----DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKV 647 (668)
Q Consensus 577 ~A~~~~~~----~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 647 (668)
+-.--+++ ....| -..+|-.....+...|+++.|....-.+.+..+ +.++...++.+.+.|+-..|..+
T Consensus 1647 epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~ 1724 (2382)
T KOG0890|consen 1647 EPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSV 1724 (2382)
T ss_pred hHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHH
Confidence 11111111 11222 345788888888899999999988888877664 46899999999999999999999
Q ss_pred HHHHHhcCC
Q 005943 648 RKAGKKLGE 656 (668)
Q Consensus 648 ~~~~~~~~~ 656 (668)
++...+...
T Consensus 1725 Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1725 LQEILSKNF 1733 (2382)
T ss_pred HHHHHHhhc
Confidence 999987655
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.72 Score=26.74 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
|..+...+...|++++|...|+++.+..|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444455555555555555555444
|
... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.66 Score=26.94 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+|..++.+|...|++++|+..+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4788999999999999999999999887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.52 Score=25.45 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHH
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888888775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=37 Score=36.61 Aligned_cols=91 Identities=12% Similarity=-0.144 Sum_probs=48.1
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCChh
Q 005943 566 VDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATS---PEDPSKYVMLSNVYATLGMWD 642 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 642 (668)
+..+...|...+|...+..+....+......+.....+.|..+.++.........+ -.-|..|...+..+.+.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34455667777777777665323444555555555566777777766665433211 011224555555555555556
Q ss_pred hHHHHHHHHHhcCC
Q 005943 643 SLSKVRKAGKKLGE 656 (668)
Q Consensus 643 ~a~~~~~~~~~~~~ 656 (668)
.+.-+----++.++
T Consensus 494 ~~lv~ai~rqES~f 507 (644)
T PRK11619 494 QSYAMAIARQESAW 507 (644)
T ss_pred HHHHHHHHHHhcCC
Confidence 55543333334444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.90 E-value=66 Score=39.44 Aligned_cols=368 Identities=15% Similarity=0.117 Sum_probs=181.6
Q ss_pred HHHHHHHhCCChHHHHHHhhcc----CCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHH-hhhhhhcC
Q 005943 206 SLIDMYLKCGEIDDGLALFNFM----PERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQ-YSSWAASA 280 (668)
Q Consensus 206 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~ 280 (668)
++..+=.+++.+.+|+..++.- .+.+. ....+-.+...|+.-+++|....+... . .
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~-------------~e~l~fllq~lY~~i~dpDgV~Gv~~~r~------a 1448 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKET-------------EEALYFLLQNLYGSIHDPDGVEGVSARRF------A 1448 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHH-------------HHHHHHHHHHHHHhcCCcchhhhHHHHhh------c
Confidence 4555667889999999999883 22221 233444555589999998888777763 3 2
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccch-
Q 005943 281 YGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCID-SYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIV- 358 (668)
Q Consensus 281 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 358 (668)
.|+ ...-|......|++..|...|+.+.+.+ |+ ..+++-++......+.+ ....-..+.... ...+....
T Consensus 1449 ~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l--~t~i~~~dg~~~-~~se~~~~~ 1520 (2382)
T KOG0890|consen 1449 DPS---LYQQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHL--STEILHLDGLII-NRSEEVDEL 1520 (2382)
T ss_pred Ccc---HHHHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccch--hHHHhhhcchhh-ccCHHHHHH
Confidence 222 2334555677899999999999998764 44 56677666666666665 333322111111 11111222
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHH--HHHHHhcCCcH--HHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Q 005943 359 GSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGL--IMGCTKHGLNS--LAYLLFRDMINSNQDVNQFIISSVLKVCSC 434 (668)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 434 (668)
++.=+.+--+.++++..+..+. ..+...|.+. .....+...-+ .-.+..+-+.+.- ..-+.+|+.
T Consensus 1521 ~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~--------i~~lsa~s~ 1589 (2382)
T KOG0890|consen 1521 NSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELV--------IENLSACSI 1589 (2382)
T ss_pred HHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHh--------hhhHHHhhc
Confidence 2222344456677777776655 4444455443 22222222111 1112222222111 011112222
Q ss_pred ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-----CHhHHHHHHHHHHhcCChHHHHH
Q 005943 435 LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER-----DVVSWTGIIVGCGQNGRAKEAIA 509 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~ 509 (668)
.|.+. ..|..++....-..- +.-.+.+...... +..-|..-+..-....+..+-+-
T Consensus 1590 ~~Sy~------------------~~Y~~~~kLH~l~el-~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epIL 1650 (2382)
T KOG0890|consen 1590 EGSYV------------------RSYEILMKLHLLLEL-ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPIL 1650 (2382)
T ss_pred cchHH------------------HHHHHHHHHHHHHHH-HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHH
Confidence 22111 233333333322211 1111111111110 11112111111110111111111
Q ss_pred HH-HHHHHCCCCCC-----HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHH
Q 005943 510 YF-QEMIQSRLKPN-----EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIA 583 (668)
Q Consensus 510 ~~-~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 583 (668)
.+ +.+......|+ ..+|....+...++|.++.|...+-...+. . -...+...++.+...|+...|+.+++
T Consensus 1651 a~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--r--~~~i~~E~AK~lW~~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1651 AFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--R--LPEIVLERAKLLWQTGDELNALSVLQ 1726 (2382)
T ss_pred HHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--c--cchHHHHHHHHHHhhccHHHHHHHHH
Confidence 11 11222111222 246888888888899999998876666532 2 34556667888889999999999888
Q ss_pred hC-----C-----CCCCHHHHHHHHHH--------H-HhhCC--HHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 005943 584 EM-----P-----FKPDKTIWASMLKA--------C-ETHNN--TKLVSIIAEQLLATSPEDPSKYVMLSNV 634 (668)
Q Consensus 584 ~~-----~-----~~p~~~~~~~l~~~--------~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 634 (668)
+. + .++.+..-+..+.. | ...++ .+..+..|.++.+..|.....+..++..
T Consensus 1727 ~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1727 EILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred HHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 65 1 11111222222211 1 12333 3446678888888888766677666643
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.89 E-value=35 Score=37.10 Aligned_cols=185 Identities=14% Similarity=0.093 Sum_probs=93.2
Q ss_pred HhcCChHHHHHHhccCC----CCCH-------hHHHHHHH-HHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 005943 468 LKCGEIDDGLALFKFMP----ERDV-------VSWTGIIV-GCGQNGRAKEAIAYFQEMIQS----RLKPNEITFLGVLS 531 (668)
Q Consensus 468 ~~~~~~~~A~~~~~~~~----~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~ 531 (668)
....++.+|..++.+.. .|+. ..|+.+-. .....|+++.|+.+.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566777766665443 2221 13443322 234557778888877776653 12233345666667
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCChhHHHH---H--HHHhhhcCC--hHHHHHHHHhC-----CCCC----CHHHHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYC---M--VDLLGQAGC--FDDAEQLIAEM-----PFKP----DKTIWA 595 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~---l--~~~~~~~g~--~~~A~~~~~~~-----~~~p----~~~~~~ 595 (668)
+..-.|++++|..+.+...+. .-.-+...+.. + ...+...|+ +.+....+... +.+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788888888776665532 22223332222 2 234455663 22222223222 1111 223334
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHh----cCCCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 596 SMLKACETHNNTKLVSIIAEQLLA----TSPEDP---SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 596 ~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+..++.+ .+.+..-.....+ ..|... ..+..|+.++...|+.++|...+.++.....
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 44444433 3333332222222 222221 1223677788888888888888888876655
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=21 Score=33.73 Aligned_cols=78 Identities=8% Similarity=-0.074 Sum_probs=33.4
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCCh----hHHHHHHHHHHhCCCCCCHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQN----EEAITLLSHIHSSGMCIDSYT 321 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~t 321 (668)
+..+....+..+...|..+-...+..-+ ..+|...-...+.++.+.|+. .++...+..+... .|+...
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll------~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELC------SSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHH------hCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3444445555555555433222222222 223333334445555555542 3455555555322 244444
Q ss_pred HHHHHHHHHh
Q 005943 322 FTSALKACIN 331 (668)
Q Consensus 322 ~~~ll~~~~~ 331 (668)
-...+.++..
T Consensus 108 R~~A~~aLG~ 117 (280)
T PRK09687 108 RASAINATGH 117 (280)
T ss_pred HHHHHHHHhc
Confidence 4444444443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.75 Score=28.74 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 629 VMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 629 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|+.+|...|+.+.|+++++++...|.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4688999999999999999999886543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.83 E-value=15 Score=31.89 Aligned_cols=129 Identities=10% Similarity=-0.005 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHhhcCCCHHHHHHHHHhcccccCCCCCh----hHHH
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFL--GVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL----EHYY 563 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~ 563 (668)
.|..++.+.. .+.. +.....+++....-....-.+. .+...+...|+++.|..-++..... +.|. ..-.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3444554443 2333 5555556666542121222222 2344677888999998888876632 2221 2223
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMPFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
.|.+.....|.+++|+..++....+ -.......-..++...|+-++|+..|+++++..++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 4556778889999999998877422 12222333445688889999999999998887644
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.76 E-value=14 Score=31.35 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=73.2
Q ss_pred HHhcCChHHHHHHhccCCCCCHhHHHHHHH-----HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HhhcCCC
Q 005943 467 YLKCGEIDDGLALFKFMPERDVVSWTGIIV-----GCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS---ACRHAGL 538 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~g~ 538 (668)
+.+.+..++|+.-|..+.+.+.-.|..|.. ...+.|+...|...|++.-.-.-.|-..--..-++ .+..+|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 346677788888887777765555554432 34567788888888887766433333321111122 3456777
Q ss_pred HHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 539 VEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
++....-.+.+..+ +-+.....-..|.-+-.+.|++.+|.+.|..+
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 77777777776643 33334455566666777888888888887766
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.64 E-value=0.99 Score=25.82 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=11.5
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
++.+.|++++|.+.++++++..|+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHccCHHHHHHHHHHHHHHCcC
Confidence 344444555555555555444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.38 E-value=3.7 Score=38.18 Aligned_cols=78 Identities=10% Similarity=0.119 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCHH
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHS-----SGMCIDSY 320 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~ 320 (668)
..++..++..+...|+.+.+.+.++++.. ..| +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~----~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE----LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 45677888899999999999999999966 444 778899999999999999999999998865 47777765
Q ss_pred HHHHHHHH
Q 005943 321 TFTSALKA 328 (668)
Q Consensus 321 t~~~ll~~ 328 (668)
+.......
T Consensus 229 ~~~~y~~~ 236 (280)
T COG3629 229 LRALYEEI 236 (280)
T ss_pred HHHHHHHH
Confidence 55443333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.26 E-value=4.3 Score=37.74 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=77.0
Q ss_pred hcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC-CChh-----HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCC
Q 005943 32 YGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR-KNIV-----SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNG 105 (668)
Q Consensus 32 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 105 (668)
.|.+.++.+-..++.......+++++..++=+++. |+.+ +-.++++.+.+ -++++++.++..=.+.|+. ||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF-~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIF-PDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccc-cch
Confidence 34455566666666666667788999888877753 3222 23345565554 4778999999999999999 999
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 005943 106 FMYSAVLKACSLSGDLDLGRLIHERITREK 135 (668)
Q Consensus 106 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 135 (668)
.+++.+|..+.+.++..+|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877653
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.23 E-value=3 Score=38.82 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
.+.+-.++.+.++++.|..+.+.++.+.|+++.-+..-+.+|.+.|.+..|..=++...+.-+.+|
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 455666788999999999999999999999999999999999999999999998888877766444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.21 E-value=7.5 Score=33.73 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=23.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 493 GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI--TFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 493 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
.+..-|.+.|+.+.|++.|.++.+.-..|... .+..+++.....+++..+...+.+.
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444444444444444432222221 2333444444444444444444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.16 E-value=35 Score=36.67 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=36.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCC-------hhHHHHHHHHHHhCCC
Q 005943 252 ALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQ-------NEEAITLLSHIHSSGM 315 (668)
Q Consensus 252 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~ 315 (668)
.+|-.+.++|++++|.++....... .......+-..+..+....+ -++...-|++......
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~---~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ---FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG---S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh---hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 5677799999999999999554332 33444556666777765422 2344555555554433
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.55 E-value=1.2 Score=25.73 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
.+|..++.+|.+.|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 468899999999999999999999987643
|
... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.43 E-value=4.6 Score=34.84 Aligned_cols=95 Identities=7% Similarity=-0.011 Sum_probs=68.0
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASML-----KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
.+...+..+|++++|..-++..-..|....+..++ ......|.++.|...++......- .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 34567889999999999998764344444444443 446678899988888776543221 123456778999999
Q ss_pred CChhhHHHHHHHHHhcCCCCC
Q 005943 639 GMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 639 g~~~~a~~~~~~~~~~~~~~~ 659 (668)
|+.++|+.-++.....+..++
T Consensus 173 g~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 173 GDKQEARAAYEKALESDASPA 193 (207)
T ss_pred CchHHHHHHHHHHHHccCChH
Confidence 999999999999988764333
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=4 Score=40.23 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=75.7
Q ss_pred HhcCChHHHHHHH-HHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 499 GQNGRAKEAIAYF-QEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 499 ~~~~~~~~a~~~~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
...|+.-.|-+-+ .-+....-.|+..... ...+...|+++.+...+..... -+.....+...+++.+.+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 3456666655443 3344433344443332 3345677888888777776653 233455667777777788888888
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 578 AEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 578 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
|...-..| +.+ .+..............|-++++.-.|+++..+.|+....+..
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 88777766 211 233333333333455677788888888888877665544443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.15 E-value=47 Score=35.74 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCC-------hHHHHHHHHHHHHcCC
Q 005943 71 SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD-------LDLGRLIHERITREKL 136 (668)
Q Consensus 71 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~ 136 (668)
.|. +|-.|.|+|++++|.++........ . .....|...+..+....+ -+....-++...+...
T Consensus 114 ~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~-~-~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 114 IWA-LIYYCLRCGDYDEALEVANENRNQF-Q-KIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHH-HHHHHHTTT-HHHHHHHHHHTGGGS---TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhhh-c-chhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 443 5566789999999998886655543 3 556778888888876532 2344455555554433
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.10 E-value=0.93 Score=25.94 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++..++.++.+.|++++|.++++++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 567889999999999999999999987643
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.09 E-value=22 Score=31.86 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 005943 605 NNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~ 623 (668)
.|.-.+...+++..+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555555666666666665
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.96 E-value=9.1 Score=34.39 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=10.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~ 515 (668)
-..+|...+++++|..-+.+..
T Consensus 37 AAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3444445555555555444443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.83 E-value=26 Score=32.38 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=25.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHH
Q 005943 393 LIMGCTKHGLNSLAYLLFRDMINSNQDVNQFII 425 (668)
Q Consensus 393 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 425 (668)
+.+...+.+++++|+..+.++...|+..+..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 445566788899999999999988887766543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.66 E-value=8.7 Score=33.30 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=66.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHH
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKPNE-----ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDL 568 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 568 (668)
..-+..+|++++|..-|.+.++. ++|.. ..|..-..++.+.+.++.|+.-..... .+.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHH
Confidence 45578899999999999998885 33322 246666667888999999988777766 45554 3333344568
Q ss_pred hhhcCChHHHHHHHHhC-CCCCCHH
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKPDKT 592 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p~~~ 592 (668)
|.+..++++|++-++++ ...|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 88888999999888887 4455543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.52 E-value=3.7 Score=38.14 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=58.8
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-CCH-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 005943 452 GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE-RDV-----VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEIT 525 (668)
Q Consensus 452 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 525 (668)
|.+.+..+...++..-....+++.++..+-++.. |+. .+-...++.+.+ -+.++++.++..=++-|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 4444555555555555555666666666655543 211 011122222222 255677777777777778888888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhccc
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKP 551 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 551 (668)
++.+++.+.+.+++.+|.++...|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888887777776666553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.47 E-value=7 Score=33.92 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMPER------DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS 531 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 531 (668)
..+..+.+.|++.|+.+.|.+.|.++.+. -...+-.+|+.....+++..+...+.+....--.+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45778889999999999999999998763 234567788888899999999988887765422222121111111
Q ss_pred -----HhhcCCCHHHHHHHHHhcccc
Q 005943 532 -----ACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 532 -----~~~~~g~~~~a~~~~~~~~~~ 552 (668)
++...+++..|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 234567777777777666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.44 E-value=26 Score=32.02 Aligned_cols=241 Identities=17% Similarity=0.211 Sum_probs=135.7
Q ss_pred hcCChHHHHHHHccCCC----C---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHc---C--CCCcHHHHHHHHHHhccc
Q 005943 368 RLGNVKSALELFHRLPK----K---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINS---N--QDVNQFIISSVLKVCSCL 435 (668)
Q Consensus 368 ~~~~~~~a~~~~~~~~~----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~ll~~~~~~ 435 (668)
+...+++|+.-|+.+.+ + .-.+...++..+.+.+++++..+.|++|..- . -.-+..+.+.++.-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34567778777776543 2 2234566788888899999888888887531 1 123445666776666655
Q ss_pred cchHhHHHHHHHH----HHhC-CCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--------C-------CHhHHHHHH
Q 005943 436 ASLRRGKQVHAFC----VKRG-FEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--------R-------DVVSWTGII 495 (668)
Q Consensus 436 ~~~~~a~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~-------~~~~~~~l~ 495 (668)
.+.+....+++.- .+.. -..-..+-+.|...|...+++.+...++.++.. . -...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5555555444322 2211 011112334566777777777777777776542 1 134577778
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHh-----hcCCCHHHHHH-HHHhccccc---CCCC--ChhHHH
Q 005943 496 VGCGQNGRAKEAIAYFQEMIQSR-LKPNEITFLGVLSAC-----RHAGLVEEAWT-IFTSMKPEY---GLEP--HLEHYY 563 (668)
Q Consensus 496 ~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~g~~~~a~~-~~~~~~~~~---~~~p--~~~~~~ 563 (668)
..|...++-..-..++++...-. --|.+.. ..+|+-| .+.|.+++|.. +|+... .+ |-+. +.--|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFK-NYDEsGspRRttCLKYL 276 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFK-NYDESGSPRRTTCLKYL 276 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHh-cccccCCcchhHHHHHH
Confidence 88888888877788888766521 2344433 3344444 46678877754 333332 21 2211 123466
Q ss_pred HHHHHhhhcCC----hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHH
Q 005943 564 CMVDLLGQAGC----FDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAE 615 (668)
Q Consensus 564 ~l~~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 615 (668)
.|.+.+.+.|- ..+|.- ....|.......++.+|.+. +..+-.+++.
T Consensus 277 VLANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 277 VLANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred HHHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 67777777662 111110 02346666778888888544 5555333333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.22 E-value=20 Score=30.53 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHc
Q 005943 341 LQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFH 380 (668)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 380 (668)
.+....+.+.+++|+...+..+++.+.+.|+......++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3444445556666666677777777766666665555444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=86.12 E-value=54 Score=35.39 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=105.6
Q ss_pred hhhhhhhhcchhhHHHHH-HhCCCCC--hhhHHHHHHHHH-hCCChHHHHHHhhccCCCCc-chHHHHhhhcccCchhhH
Q 005943 176 ALWNSMLSGGKQVHAFCV-KRGFEKE--DVTLTSLIDMYL-KCGEIDDGLALFNFMPERDV-VSWTGIIVGCFECSCFTL 250 (668)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~-~~g~~~~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 250 (668)
..|..++..+.+.++.+. +..+.|. ..++-.+...+. ...+++.|...+++...... ..+..+ .-..-
T Consensus 31 ~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~-------k~~~~ 103 (608)
T PF10345_consen 31 KQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL-------KFRCQ 103 (608)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH-------HHHHH
Confidence 334444444555555555 3344443 334555666665 68899999999987651111 111100 12334
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC--eeeHHHH-HHHHHhCCChhHHHHHHHHHHhCC---CCCCHHHHHH
Q 005943 251 SALVDMYSNCNVLCEARKLFDQYSSWAASAYGN--VALWNSM-ISGYVLNEQNEEAITLLSHIHSSG---MCIDSYTFTS 324 (668)
Q Consensus 251 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~t~~~ 324 (668)
..++..+.+.+... |.+.+++..+...+..-+ ...+.-+ +.-+...+++..|.+.++.+...- ..|-...+..
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 46677788877777 888888865532221111 1122222 222223479999999998886642 3444555556
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCC---------CCccchHHHHHHHHH--hcCChHHHHHHHccC
Q 005943 325 ALKACINLLNFNSRFALQVHGLIVTSGY---------ELDYIVGSNLIDLYA--RLGNVKSALELFHRL 382 (668)
Q Consensus 325 ll~~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 382 (668)
++.+.........+.+.+....+..... .|...++..+++.++ ..|+++.+...++++
T Consensus 183 l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 183 LSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665544433556666555533222 223344555554443 456655665554443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.98 E-value=4.9 Score=35.08 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=48.8
Q ss_pred hhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC----CCCchhHHHHHHHHHhcCChhh
Q 005943 570 GQAGCFDDAEQLIAEMPFKP--DKTIWASMLKACETHNNTKLVSIIAEQLLATS----PEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
.+.|+ ++|.+.|-.+...| +.......+..|....|.++++.++-+++++. ..|+.++..|+.++.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 56666666663333 33333444444555668888888888888843 2357888888888888888887
Q ss_pred HH
Q 005943 644 LS 645 (668)
Q Consensus 644 a~ 645 (668)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.84 E-value=5.7 Score=30.06 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 585 MPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 585 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
+..-|++.+..+.+.+|.|-+|+..|.++++.+.....+....|..++.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 3466899999999999999999999999999998866655546666553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=85.74 E-value=18 Score=34.47 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--CCC----HHHHHHHHHhcccccCCCC--ChhHHHHHHHHhhhcCCh
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRH--AGL----VEEAWTIFTSMKPEYGLEP--HLEHYYCMVDLLGQAGCF 575 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~----~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 575 (668)
+.+.+.+++.|.+.|++-+..+|.+....... ..+ ..+|..+|+.|++.+.+-- +..++.+++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566778888888888777766553333222 222 4568888999987644332 23344444322 33333
Q ss_pred H----HHHHHHHhC---CCCC-CHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhcCChhh
Q 005943 576 D----DAEQLIAEM---PFKP-DKTIWASMLKACETHNN---TKLVSIIAEQLLATS-PEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 576 ~----~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
+ ++..+++.+ ++.. |...+.+-+-++..... ...+.++++.+.+.. +-....|..++-+-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3 333444433 3332 33334333333332221 346677777777743 3333345555543333333335
Q ss_pred HHHHHHHHHh
Q 005943 644 LSKVRKAGKK 653 (668)
Q Consensus 644 a~~~~~~~~~ 653 (668)
....+.++.+
T Consensus 236 ~~~~i~ev~~ 245 (297)
T PF13170_consen 236 IVEEIKEVID 245 (297)
T ss_pred HHHHHHHHHH
Confidence 5555544443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.64 E-value=5.9 Score=29.65 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 586 PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 586 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
..-|++....+.+.||.|-+|+..|.++++.++.....+...|..+.
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 46688888889999999999999999999888865544444555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.54 E-value=1.5 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
.++..++.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888999999999999998888754
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.47 E-value=0.91 Score=37.90 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=53.3
Q ss_pred HHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHH
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEA 507 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 507 (668)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566667777777777888877766566677888888888888777788777773332 2233455555555655555
Q ss_pred HHHHHH
Q 005943 508 IAYFQE 513 (668)
Q Consensus 508 ~~~~~~ 513 (668)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.43 E-value=14 Score=30.41 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=29.2
Q ss_pred HhCCChHHHHHHhhccC--CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 005943 212 LKCGEIDDGLALFNFMP--ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSS 275 (668)
Q Consensus 212 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 275 (668)
...++.+++..+++.|. .|+.. ..-..-...+...|++++|.++|+++.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~--------------e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLK--------------ELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCcc--------------ccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 34677777777777666 44422 2222233346667777777777777643
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.83 E-value=29 Score=31.15 Aligned_cols=93 Identities=11% Similarity=0.013 Sum_probs=52.5
Q ss_pred HHHHHhhhc-CChHHHHHHHHhCC-----CCCCHHHHHHHHH---HHHhhCCHHHHHHHHHHHHhcCCCCch------hH
Q 005943 564 CMVDLLGQA-GCFDDAEQLIAEMP-----FKPDKTIWASMLK---ACETHNNTKLVSIIAEQLLATSPEDPS------KY 628 (668)
Q Consensus 564 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~ 628 (668)
.+...|... .++++|+..++... ...+...-.+++. .-...+++.+|+.+|+++....-+++. -|
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 445555443 56666666666551 1122222223333 345678999999999998874433321 12
Q ss_pred -HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 629 -VMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 629 -~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..-+..+...+|.=.+...+++-.+..+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 2233333444777777888877777666
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.54 E-value=3.9 Score=36.42 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=61.6
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHH
Q 005943 572 AGCFDDAEQLIAEM-PFKPDKTIW-ASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 572 ~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
..+++.|..-+.+. ...|...+| ..=+-.+.+..+++.+.+-..+++++.|+.......++..+..+..+++|+..+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34556666655444 556766544 4444455677888888888888888888888888888888888888888888888
Q ss_pred HHHhcCC
Q 005943 650 AGKKLGE 656 (668)
Q Consensus 650 ~~~~~~~ 656 (668)
+..+.+-
T Consensus 103 ra~sl~r 109 (284)
T KOG4642|consen 103 RAYSLLR 109 (284)
T ss_pred HHHHHHh
Confidence 8865544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.36 E-value=5.2 Score=30.26 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++++-++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555556666667889999999999999999999999999998876433 33446766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.21 E-value=51 Score=33.43 Aligned_cols=161 Identities=9% Similarity=0.083 Sum_probs=82.5
Q ss_pred CCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHH
Q 005943 419 DVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGII 495 (668)
Q Consensus 419 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~ 495 (668)
..|.....+++..+.......-++.+-.+|...| .+...|..++++|... ..+.-..+|+++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3444555556666666666666666666665554 3444555566666655 44455555554432 2333223333
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhh
Q 005943 496 VGCGQNGRAKEAIAYFQEMIQSRLKPNE-----ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLG 570 (668)
Q Consensus 496 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 570 (668)
.-|-+ ++.+.+..+|.+...+-++-.. ..|.-+... -..+.+....+...+..+.|...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 5566666666665554221111 123333221 134555566666666555454444555555556666
Q ss_pred hcCChHHHHHHHHhC
Q 005943 571 QAGCFDDAEQLIAEM 585 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~ 585 (668)
...++.+|++++..+
T Consensus 217 ~~eN~~eai~Ilk~i 231 (711)
T COG1747 217 ENENWTEAIRILKHI 231 (711)
T ss_pred cccCHHHHHHHHHHH
Confidence 666777777777655
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.63 E-value=4.2 Score=38.21 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=59.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcC
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAG 573 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 573 (668)
.+.|.+.|.+++|+..|..... +.| |.+++..-..+|.+...+..|..-...... .-..++.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 4578999999999999988777 467 889999999999999998888776665542 1223455565554
Q ss_pred -------ChHHHHHHHHhC-CCCCCHH
Q 005943 574 -------CFDDAEQLIAEM-PFKPDKT 592 (668)
Q Consensus 574 -------~~~~A~~~~~~~-~~~p~~~ 592 (668)
+..+|.+-.+.. ..+|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 444444444333 4566633
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.72 E-value=4.1 Score=35.69 Aligned_cols=111 Identities=19% Similarity=0.116 Sum_probs=77.3
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTK 608 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~ 608 (668)
.|-..|-+.-|..-|.... .+.|+ +.+||-|.-.+...|+++.|.+.|+.. ...|. ..+...-..++.-.|+++
T Consensus 74 lYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 4667788888888777776 66786 788999999999999999999999987 44453 222222223355678999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhc--CChhhHHHHH
Q 005943 609 LVSIIAEQLLATSPEDPSKYVMLSNVYATL--GMWDSLSKVR 648 (668)
Q Consensus 609 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 648 (668)
.|.+-+..--+.+|.|| |. ..+.|.-. -+..+|...+
T Consensus 151 LAq~d~~~fYQ~D~~DP--fR-~LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP--FR-SLWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred hhHHHHHHHHhcCCCCh--HH-HHHHHHHHhhCCHHHHHHHH
Confidence 99998888888899886 22 23344332 3455555443
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=82.40 E-value=18 Score=29.86 Aligned_cols=105 Identities=5% Similarity=0.123 Sum_probs=69.2
Q ss_pred hhHHHHHHhCCCCChhh--HHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHH
Q 005943 187 QVHAFCVKRGFEKEDVT--LTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLC 264 (668)
Q Consensus 187 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~ 264 (668)
.....|.+.+..++..+ .+.++......+++...+++++.+..-+...+.
T Consensus 23 ~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~---------------------------- 74 (145)
T PF13762_consen 23 SHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNII---------------------------- 74 (145)
T ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHh----------------------------
Confidence 34455666666666543 577777777778888887777766322211100
Q ss_pred HHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 005943 265 EARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQ-NEEAITLLSHIHSSGMCIDSYTFTSALKACINLLN 334 (668)
Q Consensus 265 ~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 334 (668)
...+..+|++++.+..+..- ---+..+|.-|.+.+.++++.-|..++.++.+...
T Consensus 75 ---------------~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 75 ---------------GWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred ---------------hhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 23356678888888766555 34567788888887888888888888888876643
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=82.40 E-value=4.4 Score=34.51 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 607 TKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 607 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
+++|+.-|++++.++|+...++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 445556666666677877777777777776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.36 E-value=3.3 Score=25.20 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
.+++.+...|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666667777777777776665
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.07 E-value=13 Score=27.85 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 503 RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 503 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
+.-++.+-+..+....+.|++....+.+++|.+.+|+..|.++++-++.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 33445555666666778888888888888998999999999888877643 2224445665543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.87 E-value=4.7 Score=26.50 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=26.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 596 SMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 596 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
.+..++.+.|++++|.+..+.+++.+|++..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556778999999999999999999999875543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=81.43 E-value=11 Score=36.03 Aligned_cols=185 Identities=10% Similarity=0.067 Sum_probs=115.4
Q ss_pred CChHHHHHHhccCCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhhcCCCH
Q 005943 471 GEIDDGLALFKFMPE------RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS--RLKPN---EITFLGVLSACRHAGLV 539 (668)
Q Consensus 471 ~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~~g~~ 539 (668)
.+.++|+..|..... ....++..+..+.+..|.+++++..--.-++. ...-. ...|..+.+++.+..++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555544332 12345667778888888888776542211110 01111 13455666666666666
Q ss_pred HHHHHHHHhcccccCCCCC---hhHHHHHHHHhhhcCChHHHHHHHHhC-C-----CCC--CHHHHHHHHHHHHhhCCHH
Q 005943 540 EEAWTIFTSMKPEYGLEPH---LEHYYCMVDLLGQAGCFDDAEQLIAEM-P-----FKP--DKTIWASMLKACETHNNTK 608 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p--~~~~~~~l~~~~~~~~~~~ 608 (668)
.+++.+-+.-..-.|..|. -....++..+....+.++++++.|+.. . ..| ...++..+...|.+..|++
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYE 179 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhh
Confidence 6666665544433344442 233445667777788899999999876 1 112 3446778888899999999
Q ss_pred HHHHHHHHHHhcC----CCC------chhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 609 LVSIIAEQLLATS----PED------PSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 609 ~a~~~~~~~~~~~----p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+|.-+..++.++. -++ ..+...++.++...|..-+|.+.-++..+..
T Consensus 180 Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 180 KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 9998888887732 222 2345567778899999999999988877643
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.38 E-value=1.5 Score=25.61 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=17.3
Q ss_pred HHHHHhcCCCCccchHHHHHHHHcCCChhHHH
Q 005943 27 CRIIKYGLSQDIFTGNNLLSMYADFTSLNDAH 58 (668)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 58 (668)
++.++.. +-++..|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344333 335556666666666666666654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=81.33 E-value=89 Score=34.23 Aligned_cols=219 Identities=10% Similarity=0.004 Sum_probs=112.8
Q ss_pred ccccchHhHHHHHHHHHHhCCCCchh-------HHHHHH-HHHHhcCChHHHHHHhccCCC--------CCHhHHHHHHH
Q 005943 433 SCLASLRRGKQVHAFCVKRGFEKEDI-------TLTSLI-DMYLKCGEIDDGLALFKFMPE--------RDVVSWTGIIV 496 (668)
Q Consensus 433 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~ 496 (668)
....++.+|..+..++...-..|+.. .++.+- ......|+++.|.++-+.... +.+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567778887777766543232221 222221 122346788888776665432 35666777778
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHH--HHHhhcCCC--HHHHHHHHHhcccccCCCCC-----hhHHHH
Q 005943 497 GCGQNGRAKEAIAYFQEMIQSRLKPNEIT---FLGV--LSACRHAGL--VEEAWTIFTSMKPEYGLEPH-----LEHYYC 564 (668)
Q Consensus 497 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~l--l~~~~~~g~--~~~a~~~~~~~~~~~~~~p~-----~~~~~~ 564 (668)
+..-.|++++|..+..+..+.--.-+... +..+ ...+...|. +.+....+......+..... ..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88888999999888776665311222222 2222 223456663 23333333333322111111 233333
Q ss_pred HHHHhhhcCChHHHHHHHHhC-----CCCCCHH--H--HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHH----
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM-----PFKPDKT--I--WASMLKACETHNNTKLVSIIAEQLLATSPED--PSKYV---- 629 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~--~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~---- 629 (668)
+..++.+ .+.+..-.... ...|... . +..++......|+.++|.....++..+...+ ...|.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444433 33333222211 1123222 1 2245566778899999999888888733221 22221
Q ss_pred -HHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 630 -MLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 630 -~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
.-.......|+.+++...+.+..+-
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s~~~ 688 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKSGDP 688 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhccCc
Confidence 1222345678888888887765443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.97 E-value=12 Score=28.31 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=59.7
Q ss_pred chhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 005943 18 SIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLE 97 (668)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 97 (668)
..++|..+-+.+...+-. ...+--.-+.++..+|++++|..+.+.+.-||...|-.+-. .+.|-.+.+...+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 467777777777765421 22222233456778899999999999988888888876644 466777777777778887
Q ss_pred cCCCCCCCchHHH
Q 005943 98 YGSVEPNGFMYSA 110 (668)
Q Consensus 98 ~~~~~p~~~~~~~ 110 (668)
+| . |....|..
T Consensus 97 sg-~-p~lq~Faa 107 (115)
T TIGR02508 97 SG-D-PRLQTFVA 107 (115)
T ss_pred CC-C-HHHHHHHH
Confidence 77 3 55555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.45 E-value=89 Score=33.64 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=42.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhhhcCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005943 253 LVDMYSNCNVLCEARKLFDQYSSWAASAYG---NVALWNSMISGYVLNEQNEEAITLLSHIHSS 313 (668)
Q Consensus 253 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 313 (668)
=++.+.+.+.+++|..+-+.... ..| -...+...|..+.-.|++++|-...-.|...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~----~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn 421 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG----NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN 421 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC----CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc
Confidence 45667888999999998887643 333 2345777888899999999998888777553
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.33 E-value=71 Score=32.46 Aligned_cols=176 Identities=11% Similarity=0.057 Sum_probs=106.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005943 454 EKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS 531 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 531 (668)
+.+....-+++..++......-++.+-.+|.. .+-..|..++.+|..+ ..++-..+|+++.+. .-|.....--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHH
Confidence 34445556677777777666666666666653 4556777788888877 567777888877774 333333333333
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCC------hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPH------LEHYYCMVDLLGQAGCFDDAEQLIAEMP----FKPDKTIWASMLKAC 601 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~ 601 (668)
-+...++.+.+..+|.++.-+ +-|. .+.|.-|.... ..+.+..+.+..++. ...-...+..+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 333337777777777766532 2221 23455444432 235566666665552 223344455555667
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
....++++|++++..+++.+..|..+...++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 77788888888888888877777666666655443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.14 E-value=7.9 Score=35.74 Aligned_cols=60 Identities=17% Similarity=0.041 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
++......|...|.+.+|.++-+++++.+|-+...+..+...|...||-=.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345556678899999999999999999999999999999999999999888888877775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.3 bits (152), Expect = 2e-10
Identities = 17/178 (9%), Positives = 49/178 (27%), Gaps = 7/178 (3%)
Query: 421 NQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALF 480
+ ++ +L+ SL + + + L + L ++ L
Sbjct: 91 WEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLL 150
Query: 481 KFMPER-------DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSAC 533
+ + + +++G + G KE + + + L P+ +++ L
Sbjct: 151 VVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210
Query: 534 RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDK 591
+ GL+ ++ +A ++ P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.9 bits (99), Expect = 3e-04
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 249 TLSALVDMYSNCNVLCEARKLFDQY-SSWAASAYGNVALWNSMISGYVLNEQNEEAITLL 307
L A + L A L + + ++N+++ G+ +E + +L
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 308 SHIHSSGMCIDSYTFTSALKAC 329
+ +G+ D ++ +AL+
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCM 210
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 2e-07
Identities = 76/562 (13%), Positives = 159/562 (28%), Gaps = 176/562 (31%)
Query: 26 HCRIIKYGLSQDIFTGNNLLSMYAD-FTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKR 84
H + + + + ++LS++ D F D + D K+I+S + S
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP--KSILSKEEIDHIIMSKDA 60
Query: 85 PNWAIRLYNHMLEYGS----------VEPN-GFMYSAVLKACSLSGDLDLGRLIHERITR 133
+ +RL+ +L + N F+ S + +TR
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR----------QPSMMTR 110
Query: 134 EKLEYDTVLMNTLLDMYVKCGSLTR-KLFDQYSNWAASA--YGNVALWNSMLSGGKQVHA 190
+E L N ++ K +++R + + + NV + + +L GK A
Sbjct: 111 MYIEQRDRLYNDN-QVFAK-YNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVA 167
Query: 191 FCVKRGFEKED--------VTL------TSLIDMYLK-CGEIDDGL-------------- 221
V ++ + + L ++++M K +ID
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 222 -----ALFNFMPER----------DVVSWTGIIVGCFECSCFTL-----SALVDMYSNCN 261
L + + +V F SC L + D S
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 262 V-------------LCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLS 308
E + L + + L +++ +++++
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQD--LPREVLTTNPR------RLSIIA 334
Query: 309 HIHSSGMC-------IDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSN 361
G+ ++ T+ +++ +N+L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA------------------------E 370
Query: 362 LIDLYARLG----NVK---SALELFHRLPKKDVVAWSGLIMGCTKHGLNSLA-YLLFRDM 413
++ RL + L L W +I +N L Y L
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLI----------WFDVIKSDVMVVVNKLHKYSLV--- 417
Query: 414 INSNQDVNQFIIS------SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMY 467
+ + IS + +L R V + + + F+ +D+ L D Y
Sbjct: 418 ---EKQPKESTISIPSIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPYL-DQY 472
Query: 468 --------LKCGEIDDGLALFK 481
LK E + + LF+
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFR 494
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 64/395 (16%), Positives = 113/395 (28%), Gaps = 134/395 (33%)
Query: 348 VTSGYELDYIVGSN--------LIDLYARLGN--VKSALELFHRLPKKDVVAWSGLIMGC 397
+ S E+D+I+ S L V+ +E R + S +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-INYKFL-MSPIKTEQ 102
Query: 398 TKHGLNSLAYLLFRD-MINSNQDVNQFIISS---VLKVCSCLASLRR------------G 441
+ + + Y+ RD + N NQ ++ +S LK+ L LR G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 442 KQVHAFCVKRGFEKED--------ITL------TSLIDMYLK-CGEIDDGL--------- 477
K A V ++ + + L ++++M K +ID
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 478 ----------ALFKFMPER----------DVVSWTGIIVGCGQNGRAKEAIAYF----QE 513
L + + + +V +A F +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QN------------AKAWNAFNLSCKI 268
Query: 514 MIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQA- 572
++ +R K FL + H L + T T P+ LL +
Sbjct: 269 LLTTRFKQV-TDFLSAATTT-HISLDHHSMT-LT---PDEVKS-----------LLLKYL 311
Query: 573 --GCFDDAEQ----------LIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLAT 620
D + +IAE + W + N KL +II L
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAES-IRDGLATWDNWKHV----NCDKLTTIIESSLNVL 366
Query: 621 SPEDPSK-YVMLS----NV---YATLGM-WDSLSK 646
P + K + LS + L + W + K
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 5e-05
Identities = 42/319 (13%), Positives = 104/319 (32%), Gaps = 63/319 (19%)
Query: 352 YELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFR 411
+E ++ + D+ ++ S E+ H + KD V+ + + +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 412 DMINSNQDVNQFIISSVLKVC-----------SCLASLRRGKQVHAFCVKRGFEKEDITL 460
+++ N F++S + L QV F K +++
Sbjct: 85 EVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--------FAKYNVSR 133
Query: 461 TSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIV----GCGQNGRAKEAIAYFQEMIQ 516
+ YLK + AL + P + +++ G G+ A + +Q
Sbjct: 134 ---LQPYLKLRQ-----ALLELRPAK------NVLIDGVLGSGKTWVALDVCL--SYKVQ 177
Query: 517 SRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCF 575
++ +I +L + + ++E + + P + H + + +
Sbjct: 178 CKM-DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--- 233
Query: 576 DDAEQLIAEMPFKP---------DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626
+L+ P++ + W + +C+ T+ + + L A +
Sbjct: 234 --LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATT---- 286
Query: 627 KYVMLSNVYATLGMWDSLS 645
++ L + TL + S
Sbjct: 287 THISLDHHSMTLTPDEVKS 305
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 668 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.57 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.5 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.45 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.44 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.28 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.22 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.21 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.21 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.21 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.2 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.17 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.97 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.96 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.87 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.85 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.72 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.71 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.66 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.62 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.62 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.62 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.61 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.56 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.53 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.5 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.5 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.49 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.46 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.44 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.42 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.41 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.4 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.39 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.39 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.38 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.31 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.3 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.26 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.26 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.26 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.25 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.24 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.19 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.16 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.16 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.15 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.14 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.14 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.11 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.08 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.08 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.08 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.07 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.06 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.05 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.05 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.03 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.01 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.99 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.96 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.95 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.91 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.89 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.89 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.84 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.83 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.82 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.82 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.73 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.73 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.72 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.68 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.64 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.63 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.58 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.5 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.43 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.38 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.33 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.25 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.22 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.19 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.12 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.09 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.04 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.04 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.02 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.99 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.86 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.85 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.84 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.78 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.71 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.7 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.44 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.36 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.35 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.31 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.27 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.15 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.95 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.87 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.77 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.21 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.81 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.38 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.76 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.28 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.41 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.09 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.51 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.64 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.62 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.49 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.93 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.39 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.07 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.65 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.79 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.06 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.85 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.52 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.28 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.22 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.19 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.8 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.74 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.71 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.01 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.54 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.19 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.4 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.05 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.12 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=348.49 Aligned_cols=506 Identities=8% Similarity=-0.052 Sum_probs=371.6
Q ss_pred HHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHH
Q 005943 47 MYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRL 126 (668)
Q Consensus 47 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 126 (668)
.+.+.|.+..+...+..++.+++..|+.++..+.+.|++++|..+|++|.... |+..++..++.+|.+.|++++|.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHH
Confidence 35567778888888888888899999999999999999999999999998755 788899999999999999999999
Q ss_pred HHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHH
Q 005943 127 IHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTS 206 (668)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 206 (668)
+++.+... .++..+++.
T Consensus 139 ~~~~~~~~---------------------------------------------------------------~~~~~~~~~ 155 (597)
T 2xpi_A 139 LLTKEDLY---------------------------------------------------------------NRSSACRYL 155 (597)
T ss_dssp HHHHTCGG---------------------------------------------------------------GTCHHHHHH
T ss_pred HHHHHhcc---------------------------------------------------------------ccchhHHHH
Confidence 99876421 257778889
Q ss_pred HHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeee
Q 005943 207 LIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVAL 286 (668)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 286 (668)
++.+|.+.|++++|.++|+++...+... ..+.+. .....+..++..+
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------------~~~~~~-------------~~~~~~~~~~~~~ 202 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDE--------------------KNANKL-------------LMQDGGIKLEASM 202 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC-------------------------------------------CCCSSCCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccc--------------------cccccc-------------cccccccchhHHH
Confidence 9999999999999999999644322100 000000 0011123335566
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhccccchHHHHHH-HHHHHHhCCCCccchHHHHHH
Q 005943 287 WNSMISGYVLNEQNEEAITLLSHIHSSGMCID-SYTFTSALKACINLLNFNSRFALQV-HGLIVTSGYELDYIVGSNLID 364 (668)
Q Consensus 287 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~ 364 (668)
|+.++.+|.+.|++++|+.+|++|.+.+ |+ ...+..+...+...+.........+ +..+...+..+...+|+.++.
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 7777777777777777777777776643 32 3333333333322222110111111 333333344445556666777
Q ss_pred HHHhcCChHHHHHHHccCCC--CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHH
Q 005943 365 LYARLGNVKSALELFHRLPK--KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGK 442 (668)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 442 (668)
.|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|.
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHH
T ss_pred HHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHH
Confidence 88888889999999988887 6888899999999999999999999999887653 36677888888888999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005943 443 QVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL 519 (668)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 519 (668)
.+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 360 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 360 LISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9998888654 56778888889999999999999999987753 457789999999999999999999999988753
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC--
Q 005943 520 KPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-------PFKPD-- 590 (668)
Q Consensus 520 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-- 590 (668)
+.+..+|..++.+|.+.|++++|.++|+++... .+.+..+|..++.+|.+.|++++|.++|+++ +..|+
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 446778888999999999999999999998743 2336788999999999999999999998887 34676
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKK 658 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 658 (668)
..+|..++.+|.+.|++++|.+.++++.+..|+++.+|..++.+|.+.|++++|.++++++.+..+.+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 77889999999999999999999999999999999999999999999999999999999988876633
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=335.44 Aligned_cols=181 Identities=10% Similarity=0.037 Sum_probs=143.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA 532 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 532 (668)
+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445566666666666666666666665432 356677788888888888888888888888753 4467788888888
Q ss_pred hhcCCCHHHHHHHHHhccccc---CCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhC
Q 005943 533 CRHAGLVEEAWTIFTSMKPEY---GLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHN 605 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~ 605 (668)
+.+.|++++|.++|+++.... +..|+ ..+|..++.+|.+.|++++|.++++++ .. +.+..+|..+..+|.+.|
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 888888888888888886431 45676 678999999999999999999999887 22 347889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 606 NTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
++++|.+.++++.+.+|+++..+..++.+|.+
T Consensus 565 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 565 IPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999987754
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=244.19 Aligned_cols=184 Identities=15% Similarity=0.208 Sum_probs=167.5
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc---------chHhHHHHHHHHHHhCCCCchh
Q 005943 388 VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA---------SLRRGKQVHAFCVKRGFEKEDI 458 (668)
Q Consensus 388 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 458 (668)
..++.+|.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.+ .++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4578889999999999999999999999999999999999999997654 4688999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMP----ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR 534 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 534 (668)
+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999886 38999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhc
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQA 572 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 572 (668)
+.|++++|.+++++|... +..|+..||+.++..+...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999866 9999999999999888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=243.94 Aligned_cols=215 Identities=12% Similarity=0.085 Sum_probs=147.1
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhh
Q 005943 87 WAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSN 166 (668)
Q Consensus 87 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~ 166 (668)
.+..+.+.+.+.+........++.+|.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+.....
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4556667777777552223468889999999999999999999999999999999999999999887754310
Q ss_pred hhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCc
Q 005943 167 WAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECS 246 (668)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (668)
.-...++.+..+++.|.+.|+.||..||++||.+|++.|++++|.++|++|...+
T Consensus 81 ----------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g--------------- 135 (501)
T 4g26_A 81 ----------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG--------------- 135 (501)
T ss_dssp ----------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------
T ss_pred ----------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------
Confidence 0111223356778888889999999999999999999999999998888887655
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSAL 326 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 326 (668)
..||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 136 ---------------------------------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 136 ---------------------------------IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp ---------------------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ---------------------------------CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666
Q ss_pred HHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHh
Q 005943 327 KACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYAR 368 (668)
Q Consensus 327 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (668)
.+|++.|+. +.|.++++.|.+.|..|+..+|+.++..+..
T Consensus 183 ~~~~~~g~~--d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 183 KVSMDTKNA--DKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHTTCH--HHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHhhCCCH--HHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666 6666666666666666666666666665554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-25 Score=223.99 Aligned_cols=374 Identities=13% Similarity=0.047 Sum_probs=271.2
Q ss_pred HHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeH
Q 005943 208 IDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALW 287 (668)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 287 (668)
...+.+.|++++|.+.++.+...++. +...+..+...+...|++++|...++..... .+.+..+|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~---~p~~~~~~ 70 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---NPLLAEAY 70 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHH
Confidence 34556677777777777666532221 3455566666677777777777777666442 23345567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHH
Q 005943 288 NSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYA 367 (668)
Q Consensus 288 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (668)
..+...+.+.|++++|+..|+++... .|+ +...+..+..++.
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~------------------------------------~~~~~~~l~~~~~ 112 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHALRL--KPD------------------------------------FIDGYINLAAALV 112 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTT------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc--Ccc------------------------------------hHHHHHHHHHHHH
Confidence 77777777777777777777776553 222 2223444555555
Q ss_pred hcCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHH
Q 005943 368 RLGNVKSALELFHRLPK--K-DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQV 444 (668)
Q Consensus 368 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 444 (668)
+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...
T Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555554432 2 33445556666666777777777777766543 23455666677777777777777777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005943 445 HAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP 521 (668)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 521 (668)
++++.+.. +.+...+..+...+...|++++|...|++... | +..++..+..++...|++++|+..|+++.+. .|
T Consensus 192 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p 268 (388)
T 1w3b_A 192 FEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QP 268 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CS
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Confidence 77776654 44566778888888889999999888887653 4 5678888999999999999999999999885 44
Q ss_pred -CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 522 -NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 522 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
+..+|..+..++.+.|++++|...++++.+. .+.+..++..+..++.+.|++++|.+.++++ ...| +..++..+.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4668888999999999999999999999853 3456888999999999999999999999887 3334 577888999
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
..+.+.|++++|...++++.+..|+++.++..++.++...|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-24 Score=214.30 Aligned_cols=354 Identities=13% Similarity=0.081 Sum_probs=292.4
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhhhhcCCCC-eeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005943 254 VDMYSNCNVLCEARKLFDQYSSWAASAYGN-VALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINL 332 (668)
Q Consensus 254 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 332 (668)
...+.+.|++++|.+.+..+.. ..|+ ...+..+...+...|++++|...++......
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~------------------ 63 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------------ 63 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------
Confidence 3456667777777777777654 3343 3445555566667777777777766654421
Q ss_pred cccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCCcHHHHHH
Q 005943 333 LNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK--K-DVVAWSGLIMGCTKHGLNSLAYLL 409 (668)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~ 409 (668)
+.+...+..+...+.+.|++++|...|+++.+ | +..+|..+..++.+.|++++|...
T Consensus 64 --------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 64 --------------------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred --------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33455566677788888888888888887653 3 556799999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-
Q 005943 410 FRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R- 486 (668)
Q Consensus 410 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~- 486 (668)
|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...|+++.+ |
T Consensus 124 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 201 (388)
T 1w3b_A 124 YVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201 (388)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99998764 2234566777788889999999999999998875 45678899999999999999999999998864 4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYC 564 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 564 (668)
+...|..+...+...|++++|+..+++..+. .| +..++..+..++...|++++|...++++.. ..| +..++..
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 276 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCN 276 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHH
Confidence 4668889999999999999999999999885 45 467899999999999999999999999984 345 5788999
Q ss_pred HHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChh
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWD 642 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 642 (668)
+..++.+.|++++|.+.++++ ..+++..++..+...+.+.|++++|...++++.+..|++..++..++.+|.+.|+++
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999988 235578899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCC
Q 005943 643 SLSKVRKAGKKLGE 656 (668)
Q Consensus 643 ~a~~~~~~~~~~~~ 656 (668)
+|...++++.+..+
T Consensus 357 ~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 357 EALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999987655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-22 Score=207.82 Aligned_cols=397 Identities=8% Similarity=-0.044 Sum_probs=319.2
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSAL 326 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 326 (668)
...+......+.+.|++++|...|+++.. ..|+...|..+..++.+.|++++|+..++++.+.+ +.+..++..+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALE----LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 45677888999999999999999999977 45788899999999999999999999999998864 34567888999
Q ss_pred HHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHH---------------------------
Q 005943 327 KACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELF--------------------------- 379 (668)
Q Consensus 327 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------------------------- 379 (668)
.++...|++ +.|...++.+.+.+- ++......++..+.+......+.+.+
T Consensus 81 ~~~~~~g~~--~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 81 SANEGLGKF--ADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHHHHTTCH--HHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred HHHHHHhhH--HHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 999999999 999999999888763 34444444444443322222222211
Q ss_pred -----------ccCCC---------C-ChhhHHHHHHHHHh---cCCcHHHHHHHHHHHH-----cCC--------CCcH
Q 005943 380 -----------HRLPK---------K-DVVAWSGLIMGCTK---HGLNSLAYLLFRDMIN-----SNQ--------DVNQ 422 (668)
Q Consensus 380 -----------~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~ 422 (668)
..... + +...+......+.. .|++++|...|+++.. ... +.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 11110 1 13334444444444 8999999999999987 311 2234
Q ss_pred HHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHH
Q 005943 423 FIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCG 499 (668)
Q Consensus 423 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 499 (668)
..+..+...+...|++++|...++.+.+.... ...+..+...+...|++++|...++++.+ .+...+..+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence 57777888899999999999999999887633 88888999999999999999999998764 35678899999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHH
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAE 579 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 579 (668)
..|++++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+..+|.+.|++++|.
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999853 334568888999999999999999999999853 2335788999999999999999999
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHh---hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 580 QLIAEM----PFKPD----KTIWASMLKACET---HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 580 ~~~~~~----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
..++++ +..++ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|...|++++|...+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999887 22222 3488889999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 005943 649 KAGKKLGE 656 (668)
Q Consensus 649 ~~~~~~~~ 656 (668)
+++.+..+
T Consensus 473 ~~a~~~~~ 480 (514)
T 2gw1_A 473 EESADLAR 480 (514)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhcc
Confidence 99988766
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=211.05 Aligned_cols=413 Identities=8% Similarity=-0.077 Sum_probs=281.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA 278 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 278 (668)
|+...|..+..++.+.|++++|.+.|+.+.+.++. +..++..+...+...|++++|...|+.+...
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 102 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD------------YSKVLLRRASANEGLGKFADAMFDLSVLSLN-- 102 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 45556666667777777777777777776633322 4566777777777778888887777777552
Q ss_pred cCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCC------
Q 005943 279 SAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGY------ 352 (668)
Q Consensus 279 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~------ 352 (668)
.+++......++..+........+.+.+..+...+..|+...+..-.......... .....+...+.....
T Consensus 103 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 179 (514)
T 2gw1_A 103 -GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL--PSVTSMASFFGIFKPELTFAN 179 (514)
T ss_dssp -SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC--CCHHHHHHHHTTSCCCCCCSS
T ss_pred -CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC--chhHHHHHHHhhcCHHHHHHH
Confidence 12233334444444443333333333333222222112211111111000111111 001111111111111
Q ss_pred ---CCccchHHHHHHHHHh---cCChHHHHHHHccCCC----------------C-ChhhHHHHHHHHHhcCCcHHHHHH
Q 005943 353 ---ELDYIVGSNLIDLYAR---LGNVKSALELFHRLPK----------------K-DVVAWSGLIMGCTKHGLNSLAYLL 409 (668)
Q Consensus 353 ---~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~~~~~~~a~~~ 409 (668)
+.+...+......+.. .|++++|...|+++.+ + +..++..+...+...|++++|...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 259 (514)
T 2gw1_A 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259 (514)
T ss_dssp CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1112333333344443 7889999988887644 1 345678888999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---C
Q 005943 410 FRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---R 486 (668)
Q Consensus 410 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~ 486 (668)
|+++...... ...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|++..+ .
T Consensus 260 ~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 260 IKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp HHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred HHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 9999887644 8888889999999999999999999988765 45677888999999999999999999998753 3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHY 562 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~ 562 (668)
+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.....-.++ ...+
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 56788899999999999999999999998852 335668888999999999999999999998753222222 3389
Q ss_pred HHHHHHhhh---cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 563 YCMVDLLGQ---AGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 563 ~~l~~~~~~---~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
..+..++.. .|++++|.+.++++ . .+.+...+..+...+.+.|++++|...++++.+..|.++..+..+.
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999 99999999999987 2 2346778889999999999999999999999999999888777654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-21 Score=200.00 Aligned_cols=430 Identities=10% Similarity=0.005 Sum_probs=315.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhc
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAAS 279 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 279 (668)
....+..+...+.+.|++++|++.|+++...++. ++.++..+...|...|++++|.+.|+++.+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 88 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN------------EPVFYSNISACYISTGDLEKVIEFTTKALEI--- 88 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 3566788889999999999999999998854432 6788999999999999999999999998763
Q ss_pred CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC--CCCccc
Q 005943 280 AYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSG--YELDYI 357 (668)
Q Consensus 280 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 357 (668)
.+.+..++..+...+...|++++|+..|+.+ .. .|+... ..+..+...+.. ..+...++.+.... ..+...
T Consensus 89 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~~~--~~~~~~~~~~~~--~~a~~~~~~~l~~~~~~~~~~~ 161 (537)
T 3fp2_A 89 KPDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDFDG--ASIEPMLERNLN--KQAMKVLNENLSKDEGRGSQVL 161 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHH--HHHHHHHHHHCC-------CCC
T ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCCCh--HHHHHHHHHHHH--HHHHHHHHHHHHhCcccccccc
Confidence 2335677888999999999999999999743 22 232221 122333334444 66666666664431 111222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHccCCCCChh---hHHHHHHHHHh--------cCCcHHHHHHHHHHHHcCCCCc-----
Q 005943 358 VGSNLIDLYARLGNVKSALELFHRLPKKDVV---AWSGLIMGCTK--------HGLNSLAYLLFRDMINSNQDVN----- 421 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~----- 421 (668)
.....+..+....+.+.+...+......+.. ....+...+.. .|++++|..+++++.+......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp CCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred chHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH
Confidence 2234455566777888887777776655433 33333333222 2478889999998886543221
Q ss_pred -HHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHH
Q 005943 422 -QFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVG 497 (668)
Q Consensus 422 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 497 (668)
..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...|+++.+ .+...|..+...
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 2245566667778889999999999988874 4577888889999999999999999987763 357788889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++... .+.+...+..+..++...|++++
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHH
Confidence 999999999999999998853 234567888889999999999999999998853 23357788899999999999999
Q ss_pred HHHHHHhCC----CC----CCHHHHHHHHHHHHhh----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 578 AEQLIAEMP----FK----PDKTIWASMLKACETH----------NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 578 A~~~~~~~~----~~----p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
|.+.++++. .. .....+......+.+. |++++|...++++.+..|+++.++..++.+|...|
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999998761 11 1222344455666777 99999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCC
Q 005943 640 MWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 640 ~~~~a~~~~~~~~~~~~ 656 (668)
++++|.+.+++..+..+
T Consensus 477 ~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 477 KIDEAIELFEDSAILAR 493 (537)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHhCC
Confidence 99999999999887765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-21 Score=196.54 Aligned_cols=335 Identities=13% Similarity=0.053 Sum_probs=216.0
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 325 (668)
+...+..++..+.+.|++++|...|+.+... .+.+..+|..+..++...|++++|+..|+++.+.+ |+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~------- 92 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MD------- 92 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC-------
Confidence 4566777777777777777777777777542 22355667777777777777777777777766532 11
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCC---h---hhHHHHHHHHHh
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKD---V---VAWSGLIMGCTK 399 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~l~~~~~~ 399 (668)
+...+..+...|.+.|++++|.+.|+++.+.+ . ..+..+...+..
T Consensus 93 -----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 93 -----------------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 22233334444555555555555555443321 1 233333222100
Q ss_pred cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005943 400 HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLAL 479 (668)
Q Consensus 400 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 479 (668)
.+ +..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...
T Consensus 144 ~~-----------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (450)
T 2y4t_A 144 QR-----------------------LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISD 199 (450)
T ss_dssp HH-----------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHH
T ss_pred HH-----------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 00 0111122333444444444444444432 34556666677777777777777777
Q ss_pred hccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH------------HHHhhcCCCHHHHH
Q 005943 480 FKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGV------------LSACRHAGLVEEAW 543 (668)
Q Consensus 480 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l------------l~~~~~~g~~~~a~ 543 (668)
|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+. ..+..+ ...+...|++++|.
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 776653 35667777788888888888888888887764 3433 334333 67788889999999
Q ss_pred HHHHhcccccCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 544 TIFTSMKPEYGLEPH-----LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 544 ~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
..|+++... .|+ ...+..++.++.+.|++++|.+.++++ ...| +...|..+..+|...|++++|...+++
T Consensus 278 ~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 278 SKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 988888743 454 347788888889999999999988887 3334 678888888889999999999999999
Q ss_pred HHhcCCCCchhHHHHHH------------HHHhcC-----ChhhHHHHHHH
Q 005943 617 LLATSPEDPSKYVMLSN------------VYATLG-----MWDSLSKVRKA 650 (668)
Q Consensus 617 ~~~~~p~~~~~~~~l~~------------~~~~~g-----~~~~a~~~~~~ 650 (668)
+++..|+++.++..++. .|...| +.+++.+.+++
T Consensus 355 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999998888888884 355555 55666777765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-20 Score=196.07 Aligned_cols=447 Identities=12% Similarity=0.033 Sum_probs=306.7
Q ss_pred hhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHh
Q 005943 69 IVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLD 148 (668)
Q Consensus 69 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 148 (668)
...|..+...+.+.|++++|+..|+++.+.. + .+...|..+..++...|++++|.+.++.+.+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------ 90 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-P-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP------------ 90 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------------
Confidence 3467778888888888888988888888876 2 3566788888888888888888888888876532
Q ss_pred hhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccC
Q 005943 149 MYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMP 228 (668)
Q Consensus 149 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 228 (668)
.+...+..+...+...|++++|...|+.+.
T Consensus 91 --------------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 120 (537)
T 3fp2_A 91 --------------------------------------------------DHSKALLRRASANESLGNFTDAMFDLSVLS 120 (537)
T ss_dssp --------------------------------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred --------------------------------------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 234456666677777788888888776443
Q ss_pred -CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHH
Q 005943 229 -ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLL 307 (668)
Q Consensus 229 -~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 307 (668)
.++.. ...+..+...+....|...++.+.....+..+........+..+....+.+.+...+
T Consensus 121 ~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 121 LNGDFD-----------------GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred cCCCCC-----------------hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 22111 111223334444566666666664422112222233344555555555555554443
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC--
Q 005943 308 SHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK-- 385 (668)
Q Consensus 308 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 385 (668)
..... ..+....+...+........ -......|++++|..+++++.+.
T Consensus 184 ~~~~~--~~~~~~~~~~~l~~~~~~~~----------------------------~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 184 NTSSN--YDTAYALLSDALQRLYSATD----------------------------EGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp CCCCS--SCSSHHHHHHHHHHHHTCSH----------------------------HHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred hhccc--cccHHHHHHHHHHHHHHhhh----------------------------hhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 33221 11221112111111111000 00111235677777777776543
Q ss_pred -C-------hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCch
Q 005943 386 -D-------VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKED 457 (668)
Q Consensus 386 -~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 457 (668)
+ ..++..+...+...|++++|...|++..... |+...+..+...+...|+++.|...++.+.+.. +.+.
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 310 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYP 310 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCH
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCH
Confidence 2 1246666778888999999999999998864 457888889999999999999999999998875 4567
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR 534 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 534 (668)
.++..+...+...|++++|...|++..+ | +...+..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 8899999999999999999999998763 3 56788999999999999999999999999863 334568888999999
Q ss_pred cCCCHHHHHHHHHhcccccCCCC----ChhHHHHHHHHhhhc----------CChHHHHHHHHhC-C-CCCCHHHHHHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEP----HLEHYYCMVDLLGQA----------GCFDDAEQLIAEM-P-FKPDKTIWASML 598 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~-~~p~~~~~~~l~ 598 (668)
..|++++|...++++.....-.+ ....+..+..++... |++++|...++++ . .+.+...+..+.
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999875311111 123345556778888 9999999999988 2 334677899999
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
..+.+.|++++|.+.++++.+..|.++.....
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999998766543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.9e-20 Score=187.14 Aligned_cols=296 Identities=12% Similarity=0.073 Sum_probs=221.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 005943 356 YIVGSNLIDLYARLGNVKSALELFHRLPK---KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVC 432 (668)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 432 (668)
...+..+...+.+.|++++|...|+++.+ .+..+|..+..++...|++++|...|+++.+.+ +.+...+..+..++
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 33444455555556666666665555432 244555556666666666666666666665543 22345555556666
Q ss_pred ccccchHhHHHHHHHHHHhCCCCch---hHHHH------------HHHHHHhcCChHHHHHHhccCCC---CCHhHHHHH
Q 005943 433 SCLASLRRGKQVHAFCVKRGFEKED---ITLTS------------LIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGI 494 (668)
Q Consensus 433 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~------------l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 494 (668)
...|++++|...++.+.+.. +.+. ..+.. +...+.+.|++++|...|+++.+ .+...+..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 66666666666666555432 2222 33333 34558899999999999998763 467789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHH--------
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCM-------- 565 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l-------- 565 (668)
..+|.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.. ..|+ ...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998853 45678899999999999999999999999984 3554 4445444
Q ss_pred ----HHHhhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 566 ----VDLLGQAGCFDDAEQLIAEM-PFKPD-----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 566 ----~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+..+.+.|++++|.+.|+++ ...|+ ...+..+...+.+.|++++|...++++.+..|+++.++..++.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88999999999999999988 33454 447888888999999999999999999999999999999999999
Q ss_pred HhcCChhhHHHHHHHHHhcCCC
Q 005943 636 ATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
...|++++|...++++.+..+.
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHhcCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-16 Score=170.11 Aligned_cols=412 Identities=10% Similarity=0.098 Sum_probs=307.4
Q ss_pred CCchhhhhhhhc----chhhHHHHHHhCCC--CChhhHHHHHHHHHhCCChHHHHHHhhccC-CCCcchHHHHhhhcccC
Q 005943 173 GNVALWNSMLSG----GKQVHAFCVKRGFE--KEDVTLTSLIDMYLKCGEIDDGLALFNFMP-ERDVVSWTGIIVGCFEC 245 (668)
Q Consensus 173 ~~~~~~~~~~~~----~~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~ 245 (668)
.|...|..++.. .++++.+.+...+. .++.-....+++|...|.+.+|+++++++. .+...+ .
T Consensus 951 ~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs----------~ 1020 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS----------E 1020 (1630)
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCccc----------c
Confidence 577888888865 34555555544432 344455778899999999999999999988 322111 1
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 325 (668)
+...-+.++....+. +..+..++..... ......+...+...|.+++|..+|++.. -.....+.+
T Consensus 1021 n~~LqnlLi~tAIka-D~~Rv~eyI~kLd---------~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL 1085 (1630)
T 1xi4_A 1021 HRNLQNLLILTAIKA-DRTRVMEYINRLD---------NYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL 1085 (1630)
T ss_pred cHHHHHHHHHHHHHh-ChhhHHHHHHHhh---------hccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH
Confidence 334455566666666 4556666655552 1124557788899999999999999852 112222333
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHH
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSL 405 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 405 (668)
+. ..+++ +.|.++.+.. -++.+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|++++
T Consensus 1086 ie---~i~nl--drAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1086 IE---HIGNL--DRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred HH---HHhhH--HHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHH
Confidence 32 45556 7777776644 35778889999999999999999999765 677888899999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC
Q 005943 406 AYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE 485 (668)
Q Consensus 406 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 485 (668)
|.+.|...++.. +++...+.+..+|++.++++....+.+ .++...+..+.+.|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 999999877654 333333458889999988886554432 345566777999999999999999999985
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHH
Q 005943 486 RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCM 565 (668)
Q Consensus 486 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 565 (668)
..|..+..+|.+.|+++.|.+.+++. .+..+|..+..+|...|++..|......+ ..+...+..+
T Consensus 1222 ---~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEEL 1286 (1630)
T ss_pred ---hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHH
Confidence 48999999999999999999999886 35688999999999999999998875543 3456778899
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh--hCCHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACET--HNNTKLVSIIAEQLLATSP-----EDPSKYVMLSNVYA 636 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~ 636 (668)
+..|.+.|.+++|+.+++.. +..| ....|..+...+.+ -++..++.+.|..-....| .+...|..++.+|.
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877 4444 34456556555554 5567777777777666655 67788999999999
Q ss_pred hcCChhhHHHHH
Q 005943 637 TLGMWDSLSKVR 648 (668)
Q Consensus 637 ~~g~~~~a~~~~ 648 (668)
+-|+++.|...+
T Consensus 1367 ~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1367 KYEEYDNAIITM 1378 (1630)
T ss_pred hcccHHHHHHHH
Confidence 999999999543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-15 Score=161.88 Aligned_cols=250 Identities=12% Similarity=0.073 Sum_probs=184.0
Q ss_pred hcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHH
Q 005943 368 RLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAF 447 (668)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 447 (668)
..+++++|.++.+++. +..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+..
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666666666552 4567778888888888888888888553 4667777788888888888888888887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005943 448 CVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFL 527 (668)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 527 (668)
.++.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|.
T Consensus 1160 Ark~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~ 1225 (1630)
T 1xi4_A 1160 ARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 1225 (1630)
T ss_pred HHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH
Confidence 76654 33333445788888888887655443 3456666777888888888888888888774 3678
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCH
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNT 607 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 607 (668)
.+..++.+.|++++|.+.+++.. +..+|..+..++...|++..|......+ ..+...+..++..|.+.|.+
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCH
Confidence 88888888888888888887763 3477888888888888888888776653 34555667888888899999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhc--CChhhHHHHH
Q 005943 608 KLVSIIAEQLLATSPEDPSKYVMLSNVYATL--GMWDSLSKVR 648 (668)
Q Consensus 608 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 648 (668)
++|+.+++..+.++|.....+..++.+|.+. ++..++.+++
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999988888888887777777654 3444444444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-17 Score=162.82 Aligned_cols=323 Identities=12% Similarity=0.019 Sum_probs=198.4
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 325 (668)
++..+..+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|+..|+++.+.. +-+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~---- 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA---- 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH----
Confidence 4556677777888888888888888887552 22345667777777778888888888877776532 112222
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCCh------hhHHHHHHHHHh
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDV------VAWSGLIMGCTK 399 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~ 399 (668)
+..+...+...|++++|...|+++.+.++ ..+..+...+.
T Consensus 74 ---------------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 119 (359)
T 3ieg_A 74 ---------------------------------RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE- 119 (359)
T ss_dssp ---------------------------------HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-
T ss_pred ---------------------------------HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-
Confidence 23344444444555555554444432211 11111100000
Q ss_pred cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005943 400 HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLAL 479 (668)
Q Consensus 400 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 479 (668)
...+......+...|++++|...++.+.+.. +.+...+..+...+...|++++|...
T Consensus 120 ----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 120 ----------------------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 0001111233344444444444444444433 34556666677777777777777777
Q ss_pred hccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHH------------HHHHHhhcCCCHHHHH
Q 005943 480 FKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFL------------GVLSACRHAGLVEEAW 543 (668)
Q Consensus 480 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~------------~ll~~~~~~g~~~~a~ 543 (668)
+++..+ .+...+..+...+...|++++|...+++..+. .|+ ...+. .+...+.+.|++++|.
T Consensus 177 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 254 (359)
T 3ieg_A 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254 (359)
T ss_dssp HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 776543 35567777777788888888888888877764 333 22222 2255677788888888
Q ss_pred HHHHhcccccCCCCC-h----hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 544 TIFTSMKPEYGLEPH-L----EHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 544 ~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
..++++... .|+ . ..+..+..++.+.|++++|.+.+++. ...| +...+..+...+...|++++|...+++
T Consensus 255 ~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 255 SKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888887743 343 2 23455677888888888888888777 2233 667777788888888888888888888
Q ss_pred HHhcCCCCchhHHHHHHHHHhc
Q 005943 617 LLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 617 ~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
+.+.+|+++.++..+..++...
T Consensus 332 a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 332 AQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHH
Confidence 8888888887777777665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-17 Score=164.90 Aligned_cols=290 Identities=12% Similarity=0.062 Sum_probs=210.3
Q ss_pred HHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccc
Q 005943 361 NLIDLYARLGNVKSALELFHRLPK---KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLAS 437 (668)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 437 (668)
.+...+...|++++|...|+++.+ .+..++..+..++...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC
Confidence 344445555555555555554432 234455555555555555555555555555442 2233455555555555556
Q ss_pred hHhHHHHHHHHHHhCCC---CchhHHHH------------HHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHH
Q 005943 438 LRRGKQVHAFCVKRGFE---KEDITLTS------------LIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCG 499 (668)
Q Consensus 438 ~~~a~~~~~~~~~~~~~---~~~~~~~~------------l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 499 (668)
+++|...++.+.+.. + .+...+.. +...+...|++++|...++++.+ .+...+..+...+.
T Consensus 87 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 666655555554432 1 12222322 36788899999999999998763 46778899999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHH------------HHH
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYY------------CMV 566 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~l~ 566 (668)
..|++++|+..++++.+.. +.+..++..+...+...|++++|...+++.... .|+ ...+. .+.
T Consensus 166 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999863 446778999999999999999999999999843 444 33332 336
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 567 DLLGQAGCFDDAEQLIAEM-PFKPD-K----TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
..+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++.+..|+++.++..++.+|...|+
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 7799999999999999987 33343 2 2345567789999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCC
Q 005943 641 WDSLSKVRKAGKKLGE 656 (668)
Q Consensus 641 ~~~a~~~~~~~~~~~~ 656 (668)
+++|.+.++++.+..+
T Consensus 322 ~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999998766
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-17 Score=160.12 Aligned_cols=287 Identities=9% Similarity=-0.001 Sum_probs=215.2
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 005943 353 ELDYIVGSNLIDLYARLGNVKSALELFHRLPK---KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVL 429 (668)
Q Consensus 353 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 429 (668)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45566666777778888888888888877653 244566667777888888888888888887753 33455666777
Q ss_pred HHhcccc-chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChH
Q 005943 430 KVCSCLA-SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 430 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 505 (668)
..+...| ++++|...++...+.. +.+...+..+...+...|++++|...|++..+ | +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7888888888777654 44566778888888888888888888887653 3 3556777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccC-------CCCChhHHHHHHHHhhhcCChHHH
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYG-------LEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
+|+..+++..+.. +.+...+..+...+...|++++|...++++..... .+.....+..+..+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888752 34456788888888888888888888887764311 133456888888888888999988
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCChh
Q 005943 579 EQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY-ATLGMWD 642 (668)
Q Consensus 579 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 642 (668)
.+.++++ . .+.+...+..+...+.+.|++++|...++++.+..|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 8888877 2 2335667888888888888999999999988888888888888888887 4556644
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.6e-17 Score=157.20 Aligned_cols=266 Identities=11% Similarity=0.042 Sum_probs=228.8
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHH
Q 005943 385 KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLI 464 (668)
Q Consensus 385 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 464 (668)
.+...+..+...+...|++++|..+|+++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366677888889999999999999999998764 3344556667778889999999999999998875 55678888999
Q ss_pred HHHHhcC-ChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 005943 465 DMYLKCG-EIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVE 540 (668)
Q Consensus 465 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 540 (668)
..+...| ++++|...|++..+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 356789999999999999999999999999863 334567777889999999999
Q ss_pred HHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHhhCCHH
Q 005943 541 EAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP-F----------KPDKTIWASMLKACETHNNTK 608 (668)
Q Consensus 541 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~~~~ 608 (668)
+|...++++.. ..| +...+..+...+...|++++|...++++. . +.+...+..+...+...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999984 344 57889999999999999999999998771 0 334568899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 609 LVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 609 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+|...++++.+..|.++.++..++.+|...|++++|.+.++++.+..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999998877655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.5e-17 Score=155.46 Aligned_cols=287 Identities=12% Similarity=0.078 Sum_probs=140.3
Q ss_pred HcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccch
Q 005943 258 SNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNS 337 (668)
Q Consensus 258 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 337 (668)
-+.|++++|.++++++ ..| .+|..+..++.+.|++++|++.|.+ .+|..+|..+..++...|++
T Consensus 14 ~~~~~ld~A~~fae~~------~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~-- 77 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNW-- 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCH--
Confidence 3678899999999998 434 4999999999999999999999965 36888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 005943 338 RFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSN 417 (668)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 417 (668)
+.+...+...++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 9999988777663 55578889999999999999999988864 67779999999999999999999999977
Q ss_pred CCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHH
Q 005943 418 QDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVG 497 (668)
Q Consensus 418 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 497 (668)
..|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINY 216 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHH
Confidence 47899999999999999999999987 378999999999999999999988888765 444445578899
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--CCCHHHHHHHHHhcccccCCCC------ChhHHHHHHHHh
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH--AGLVEEAWTIFTSMKPEYGLEP------HLEHYYCMVDLL 569 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~ 569 (668)
|.+.|++++|+.+++...... +-....|.-+.-++++ .++..+.++.|.. +.+++| +...|..++-.|
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988643 2334455555555554 4455555555543 336666 478899999999
Q ss_pred hhcCChHHHHHHHHhC
Q 005943 570 GQAGCFDDAEQLIAEM 585 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~ 585 (668)
..-++++.|...+-+-
T Consensus 293 ~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 293 DKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HhhchHHHHHHHHHhC
Confidence 9999999998876555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.3e-15 Score=153.30 Aligned_cols=396 Identities=9% Similarity=0.072 Sum_probs=287.5
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS 324 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 324 (668)
+..+|..++. +.+.|++++|..+|+++.+ ..| +...|..++..+.+.|++++|..+|++.+... |+...|..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~----~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVA----QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHT----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 6778888888 4789999999999999976 445 56678999999999999999999999998854 77777666
Q ss_pred HHHHH-HhccccchHHHHH----HHHHHHHh-CCCC-ccchHHHHHHHHHh---------cCChHHHHHHHccCCC-CCh
Q 005943 325 ALKAC-INLLNFNSRFALQ----VHGLIVTS-GYEL-DYIVGSNLIDLYAR---------LGNVKSALELFHRLPK-KDV 387 (668)
Q Consensus 325 ll~~~-~~~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~ 387 (668)
.+... ...|+. +.+.+ +++..... |..| +...|...+....+ .|+++.|..+|++..+ |..
T Consensus 85 ~~~~~~~~~~~~--~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 85 YLSYVRETKGKL--PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHTTTS--TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHccch--hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 66433 234555 44444 66665543 6555 45667777766654 6889999999998765 221
Q ss_pred ---hhHHHHHHHH-------------HhcCCcHHHHHHHHHHH------HcC---CCCcH--------HHHHHHHHHhcc
Q 005943 388 ---VAWSGLIMGC-------------TKHGLNSLAYLLFRDMI------NSN---QDVNQ--------FIISSVLKVCSC 434 (668)
Q Consensus 388 ---~~~~~l~~~~-------------~~~~~~~~a~~~~~~m~------~~~---~~~~~--------~~~~~ll~~~~~ 434 (668)
..|....... .+.+++..|..+++++. +.. ++|+. ..|...+.....
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 2333222211 12345667777776632 111 24431 344444432211
Q ss_pred ----ccch----HhHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCChH-------HHHHHhccCCC---C-CH
Q 005943 435 ----LASL----RRGKQVHAFCVKRGFEKEDITLTSLIDMYLK-------CGEID-------DGLALFKFMPE---R-DV 488 (668)
Q Consensus 435 ----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~ 488 (668)
.++. +.+..++++..... +.+...|...+..+.+ .|+++ +|..+|++..+ | +.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 1222 36677888887763 5567788888887775 68987 89999998763 4 47
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE--ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCM 565 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 565 (668)
..|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|..+|++..+. .|+ ...|...
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~ 396 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTA 396 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHH
Confidence 7899999999999999999999999998 46653 47888888888999999999999999843 443 3444333
Q ss_pred HHH-hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHhc
Q 005943 566 VDL-LGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS----KYVMLSNVYATL 638 (668)
Q Consensus 566 ~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~ 638 (668)
+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.+.|..+|++++...|.++. .|..++......
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 322 34689999999999977 3334 6788999999999999999999999999998776665 788888888999
Q ss_pred CChhhHHHHHHHHHhcCC
Q 005943 639 GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 639 g~~~~a~~~~~~~~~~~~ 656 (668)
|+.+.+..+.+++.+.-+
T Consensus 477 G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 477 GDLASILKVEKRRFTAFR 494 (530)
T ss_dssp SCHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHCc
Confidence 999999999999876544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.6e-17 Score=160.65 Aligned_cols=277 Identities=10% Similarity=0.006 Sum_probs=221.4
Q ss_pred HhcCChHHHHH-HHccCCC---C----ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 367 ARLGNVKSALE-LFHRLPK---K----DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 367 ~~~~~~~~a~~-~~~~~~~---~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
.-.|++++|.+ .+++... . +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34477888887 7775543 1 34568888889999999999999999998764 44677888888899999999
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-HhHHHH---------------HHHHHHh
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-VVSWTG---------------IIVGCGQ 500 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~---------------l~~~~~~ 500 (668)
++|...++.+.+.. +.+..++..+...|...|++++|...|+++.. |+ ...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999988875 55778888899999999999999999987653 22 222211 2333348
Q ss_pred cCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChH
Q 005943 501 NGRAKEAIAYFQEMIQSRLKPN---EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 576 (668)
.|++++|+..++++.+. .|+ ..++..+...+...|++++|...++++... .| +...+..+..++.+.|+++
T Consensus 194 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHH
Confidence 89999999999999985 444 778999999999999999999999999853 44 5789999999999999999
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCChhh
Q 005943 577 DAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED-----------PSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 577 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 643 (668)
+|.+.++++ .. +.+...+..+...+.+.|++++|...++++.+..|.+ ..+|..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999987 33 3467789999999999999999999999999988887 7899999999999999999
Q ss_pred HHHHHHH
Q 005943 644 LSKVRKA 650 (668)
Q Consensus 644 a~~~~~~ 650 (668)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9998764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-15 Score=153.02 Aligned_cols=366 Identities=9% Similarity=0.016 Sum_probs=284.7
Q ss_pred chhhHHHHHHHHHc----CCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCC
Q 005943 246 SCFTLSALVDMYSN----CNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVL----NEQNEEAITLLSHIHSSGMCI 317 (668)
Q Consensus 246 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p 317 (668)
++.....+...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|...|++..+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 66777788888888 89999999999988542 356677888888888 899999999999998876
Q ss_pred CHHHHHHHHHHHHh----ccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHh----cCChHHHHHHHccCCC-CChh
Q 005943 318 DSYTFTSALKACIN----LLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYAR----LGNVKSALELFHRLPK-KDVV 388 (668)
Q Consensus 318 ~~~t~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~ 388 (668)
+...+..+-..+.. .++. +.+...++...+.| ++..+..+...|.. .++.++|.+.|++..+ .+..
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~--~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~ 184 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDK--AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVW 184 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 55666666666666 5677 88999999888776 45566667777877 7889999999987654 4667
Q ss_pred hHHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc----ccchHhHHHHHHHHHHhCCCCchhHH
Q 005943 389 AWSGLIMGCTK----HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSC----LASLRRGKQVHAFCVKRGFEKEDITL 460 (668)
Q Consensus 389 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 460 (668)
.+..+...|.. .++.++|...|++..+.| +...+..+...+.. .++.++|...++...+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 78888888887 789999999999988775 44555556655554 788999999999887765 34566
Q ss_pred HHHHHHHHh----cCChHHHHHHhccCCC-CCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005943 461 TSLIDMYLK----CGEIDDGLALFKFMPE-RDVVSWTGIIVGCGQN-----GRAKEAIAYFQEMIQSRLKPNEITFLGVL 530 (668)
Q Consensus 461 ~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 530 (668)
..+...|.. .+++++|...|++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 335 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLG 335 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 667777777 7899999999988765 4566777788888777 89999999999998865 445666676
Q ss_pred HHhhcCC---CHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005943 531 SACRHAG---LVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AGCFDDAEQLIAEMPFKPDKTIWASMLKACET 603 (668)
Q Consensus 531 ~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 603 (668)
..+...| ++++|.++|++.... .+...+..|...|.. .+++++|.+.|++.-...+...+..+...|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 6676656 788999999988743 457788888888888 78999999999887333467778888888877
Q ss_pred ----hCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHh
Q 005943 604 ----HNNTKLVSIIAEQLLATSPE---DPSKYVMLSNVYAT 637 (668)
Q Consensus 604 ----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 637 (668)
.+++++|...|+++.+..|+ ++.....++.++.+
T Consensus 412 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 412 GLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 78999999999999998844 66666666665543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-15 Score=143.85 Aligned_cols=271 Identities=10% Similarity=0.003 Sum_probs=214.3
Q ss_pred HHHHhcCChHHHHHHHccCCCCCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchH
Q 005943 364 DLYARLGNVKSALELFHRLPKKDV----VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLR 439 (668)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 439 (668)
+-....|++..|+..++.....++ .....+.++|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 445567999999999887765432 2445577899999999999887654 24567778888888899999999
Q ss_pred hHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005943 440 RGKQVHAFCVKRGFEK-EDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR 518 (668)
Q Consensus 440 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 518 (668)
+|...++.+...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|...++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999988876444 566677778999999999999999998 457788999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHH
Q 005943 519 LKPNEITF---LGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTI 593 (668)
Q Consensus 519 ~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 593 (668)
.|+.... ..++..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|.+.++++ ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4654321 22334455678999999999999864 3457888999999999999999999999987 3334 6778
Q ss_pred HHHHHHHHHhhCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 594 WASMLKACETHNNTKL-VSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
+..++..+...|+.++ +.++++++.+.+|+++.+.. ...+.+.++++..-+
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 8889988888998865 67899999999999986554 455666677665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-14 Score=145.89 Aligned_cols=351 Identities=11% Similarity=0.015 Sum_probs=289.1
Q ss_pred CeeeHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----ccccchHHHHHHHHHHHHhCCCC
Q 005943 283 NVALWNSMISGYVL----NEQNEEAITLLSHIHSSGMCIDSYTFTSALKACIN----LLNFNSRFALQVHGLIVTSGYEL 354 (668)
Q Consensus 283 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~~~ 354 (668)
+...+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++. +.+...+....+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~--~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDY--AQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHCC---
Confidence 56667777777777 899999999999998875 55667777777777 7787 99999999988876
Q ss_pred ccchHHHHHHHHHh----cCChHHHHHHHccCCCC-ChhhHHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCCcHHHH
Q 005943 355 DYIVGSNLIDLYAR----LGNVKSALELFHRLPKK-DVVAWSGLIMGCTK----HGLNSLAYLLFRDMINSNQDVNQFII 425 (668)
Q Consensus 355 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 425 (668)
++..+..|...|.. .+++++|...|++..+. +...+..+...|.. .++.++|.+.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55666678888888 78999999999987654 66778888888887 789999999999998875 56677
Q ss_pred HHHHHHhcc----ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHHHHhccCCC-CCHhHHHHHHH
Q 005943 426 SSVLKVCSC----LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLK----CGEIDDGLALFKFMPE-RDVVSWTGIIV 496 (668)
Q Consensus 426 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~ 496 (668)
..+...+.. .++.++|...++...+.| +...+..+...|.. .+++++|...|++..+ .+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777766 899999999999988876 45667778888876 7899999999998765 46667777888
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC-----CCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 497 GCGQ----NGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHA-----GLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 497 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
.|.. .+++++|+..|++..+.| +...+..+...+... +++++|..++++.... + +...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHH
Confidence 8877 899999999999998865 455666777777776 8999999999998753 2 4567778888
Q ss_pred HhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---
Q 005943 568 LLGQAG---CFDDAEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT--- 637 (668)
Q Consensus 568 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 637 (668)
.|...| ++++|.+.|++.-...+...+..+...|.. .+++++|...++++.+.. ++.++..++.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888766 789999999988434678888889988888 799999999999998864 57799999999998
Q ss_pred -cCChhhHHHHHHHHHhcCC
Q 005943 638 -LGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 638 -~g~~~~a~~~~~~~~~~~~ 656 (668)
.+++++|...+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998874
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=156.94 Aligned_cols=261 Identities=8% Similarity=-0.045 Sum_probs=212.3
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 386 DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 386 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
+...+..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888889999999999999999998764 3467788888899999999999999999988875 556788899999
Q ss_pred HHHhcCChHHHHHHhccCCC--CC-----------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 005943 466 MYLKCGEIDDGLALFKFMPE--RD-----------VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK-PNEITFLGVLS 531 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~ 531 (668)
+|...|++++|...|+++.+ |+ ...+..+...+...|++++|+..++++.+..-. ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988764 21 123344578889999999999999999986311 15778999999
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKL 609 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 609 (668)
.+...|++++|...++++... .+.+..++..+..+|.+.|++++|.+.++++ ...| +..++..+..++.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999853 2335889999999999999999999999987 3344 57889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 610 VSIIAEQLLATSPE------------DPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 610 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
|...++++.+..|. +..++..++.++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998766 367899999999999999999887765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-14 Score=150.73 Aligned_cols=399 Identities=10% Similarity=0.026 Sum_probs=286.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhc
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAAS 279 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 279 (668)
+...|..++. +.+.|++++|..+|+.+....+. +...|..++..+.+.|++++|.++|++...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~------------~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---- 74 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS------------SGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---- 74 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----
Confidence 5678888888 47899999999999999866543 677899999999999999999999999976
Q ss_pred CCCCeeeHHHHHHH-HHhCCChhHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------ccccchHHHHHH
Q 005943 280 AYGNVALWNSMISG-YVLNEQNEEAIT----LLSHIHS-SGMCI-DSYTFTSALKACIN---------LLNFNSRFALQV 343 (668)
Q Consensus 280 ~~~~~~~~~~li~~-~~~~~~~~~a~~----~~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~~~~~~~~a~~~ 343 (668)
..|+...|...+.. ....|+.+.|.+ +|+.... .|..| +...|...+..... .|+. +.+..+
T Consensus 75 ~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~~a~~~ 152 (530)
T 2ooe_A 75 KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI--TAVRRV 152 (530)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH--HHHHHH
T ss_pred cCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH--HHHHHH
Confidence 55777677766643 345677777665 7776654 35554 45566666555443 5677 889999
Q ss_pred HHHHHHhCCCCccchHHHHHHHH-------------HhcCChHHHHHHHcc-------CC------CCC--------hhh
Q 005943 344 HGLIVTSGYELDYIVGSNLIDLY-------------ARLGNVKSALELFHR-------LP------KKD--------VVA 389 (668)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~-------~~------~~~--------~~~ 389 (668)
++...+.........|....... .+.+++..|..+++. +. .|+ ...
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 98888721111123333222211 123456666655543 11 111 234
Q ss_pred HHHHHHHHHhc----CCc----HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc-------ccchH-------hHHHHHHH
Q 005943 390 WSGLIMGCTKH----GLN----SLAYLLFRDMINSNQDVNQFIISSVLKVCSC-------LASLR-------RGKQVHAF 447 (668)
Q Consensus 390 ~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~ 447 (668)
|...+...... ++. .++..+|++..... +.+...|......+.+ .|+++ +|..++++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 55555433322 233 37788898888753 3456677777776664 68877 88999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-H-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 005943 448 CVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-V-VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN- 522 (668)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~- 522 (668)
..+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|...+..+.+.|++++|..+|++..+. .|+
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~ 389 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTR 389 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCC
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCc
Confidence 87633355688889999999999999999999998764 43 3 47888888889999999999999999885 343
Q ss_pred HHHHHHHHHH-hhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC--HHHH
Q 005943 523 EITFLGVLSA-CRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P---FKPD--KTIW 594 (668)
Q Consensus 523 ~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~ 594 (668)
...|...... +...|++++|..+|++..+. .| +...|..++..+.+.|+.++|..+|++. . ..|+ ...|
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 2333322222 34689999999999999854 45 5789999999999999999999999987 2 2332 4478
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
...+......|+.+.+..+.+++.+..|+
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 88888888999999999999999998874
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-15 Score=156.53 Aligned_cols=372 Identities=14% Similarity=0.008 Sum_probs=203.8
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh-----cCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhC-----C
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA-----SAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSS-----G 314 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g 314 (668)
....|+.+...+...|+.++|++.|++..+... ...| ...+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456789999999999999999999987654211 1123 3567889999999999999999999876542 0
Q ss_pred -CCC-CHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHH
Q 005943 315 -MCI-DSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSG 392 (668)
Q Consensus 315 -~~p-~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 392 (668)
..+ ...++...-.++...+.-..+.|...|+...+.. | .+...+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p------------------------------~~~~~~~~ 177 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--P------------------------------KNPEFTSG 177 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--T------------------------------TCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--C------------------------------CCHHHHHH
Confidence 111 1233333322332222111144444444443322 1 12222222
Q ss_pred HHHH---HHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHH----hccccchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 393 LIMG---CTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKV----CSCLASLRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 393 l~~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
+..+ +...++.++|++.+++..+... .+...+..+... ....++.++|...++...... +.....+..+..
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~ 255 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence 2222 2233444555555555444321 122222222211 222345555555555555443 334445555566
Q ss_pred HHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCCCCH
Q 005943 466 MYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQ-------------------NGRAKEAIAYFQEMIQSRLKPNE 523 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~m~~~g~~p~~ 523 (668)
.|...|++++|...+++..+ | +...+..+..+|.. .+.++.|...+++..+.. +.+.
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 334 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLF 334 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTC
T ss_pred HHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchh
Confidence 66666666666666655442 2 23344444333321 234677888888887742 2334
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChh----HHHHHHHH-hhhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLE----HYYCMVDL-LGQAGCFDDAEQLIAEM-PFKPDKTIWASM 597 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 597 (668)
.++..+...+...|++++|...|++.... .|+.. .+..+... +...|++++|++.+++. ...|+.....
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~-- 409 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE-- 409 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH--
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH--
Confidence 56788888999999999999999998743 34322 23333332 34678999999999876 5556543322
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCceeEE
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE-KKAGMSWI 664 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 664 (668)
+....+..++++.++.+|.++.+|..++.+|...|++++|++.+++..+.+. .+...+|+
T Consensus 410 -------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 -------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 2334456778888899999999999999999999999999999999999988 66667764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-17 Score=158.29 Aligned_cols=277 Identities=10% Similarity=0.076 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 005943 338 RFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSN 417 (668)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 417 (668)
+.|.++++.+ +++.+|..+..++.+.|++++|++.|.+. +|...|..++.++...|++++|...++..++.
T Consensus 20 d~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~- 90 (449)
T 1b89_A 20 DRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK- 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-
Confidence 5555555554 33357778888888888899998888654 56668888888888899999999977766553
Q ss_pred CCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHH
Q 005943 418 QDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVG 497 (668)
Q Consensus 418 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 497 (668)
.+++.+.+.++.+|.+.|+++++.++++ .|+..++..+.+.|...|++++|...|..+ ..|..++.+
T Consensus 91 -~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~ 157 (449)
T 1b89_A 91 -ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAST 157 (449)
T ss_dssp -------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHH
T ss_pred -CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHH
Confidence 4557788888999999999988888775 467779999999999999999999999977 479999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
+.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ...+.-...++..|.+.|++++
T Consensus 158 L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHHH
Confidence 99999999999999987 26789999999999999999996654432 2333445578899999999999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhh--CCHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 578 AEQLIAEM-PFK-PDKTIWASMLKACETH--NNTKLVSIIAEQLLATSP-----EDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 578 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
|..+++.. +.. -....|.-+..++.+- ++..+..+.|..-..+.| .+...|..++.+|.+.++++.|...+
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 99999876 433 3566777777776654 455555555555455556 67889999999999999999888754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=148.65 Aligned_cols=251 Identities=8% Similarity=-0.045 Sum_probs=205.5
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCcH--HHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVNQ--FIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG 471 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (668)
++.....|++..|+..+++... ..|+. .....+.+++...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3456678999999998877643 33443 3556678899999999999876654 24667788889999999999
Q ss_pred ChHHHHHHhccCC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 005943 472 EIDDGLALFKFMP----ER-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIF 546 (668)
Q Consensus 472 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 546 (668)
+.++|++.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 25 456677788999999999999999987 467778999999999999999999999
Q ss_pred HhcccccCCCCChhHH---HHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 547 TSMKPEYGLEPHLEHY---YCMVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 547 ~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...++.+..++.+.|++++|...++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999854 4654321 23445555669999999999998 345678899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChhh-HHHHHHHHHhcCCCCC
Q 005943 622 PEDPSKYVMLSNVYATLGMWDS-LSKVRKAGKKLGEKKA 659 (668)
Q Consensus 622 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~ 659 (668)
|+++.++..++.++...|+.++ +.++++++.+..+..|
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999976 5789999988877443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=8.8e-16 Score=150.11 Aligned_cols=258 Identities=7% Similarity=-0.125 Sum_probs=182.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 005943 390 WSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLK 469 (668)
Q Consensus 390 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 469 (668)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3444444555555555555555554432 2234444445555555555555555555555443 3345555566666666
Q ss_pred cCChHHHHHHhccCCC--C-CHhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005943 470 CGEIDDGLALFKFMPE--R-DVVSWTGI--------------IV-GCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS 531 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 531 (668)
.|++++|...++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 6666666666655432 1 11122221 22 3677889999999999998863 346778899999
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKL 609 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~ 609 (668)
.+...|++++|...++++... .+.+...+..+..++...|++++|.+.++++ .. +.+...+..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999998853 2335788999999999999999999999987 32 3467788999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 610 VSIIAEQLLATSPE------------DPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 610 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
|...++++.+..|. ++.++..++.++...|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999998 78899999999999999999999987543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.7e-16 Score=152.60 Aligned_cols=299 Identities=12% Similarity=0.060 Sum_probs=150.5
Q ss_pred HHcCCCHHHHHH-HHHHhhhhhhc-CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 005943 257 YSNCNVLCEARK-LFDQYSSWAAS-AYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLN 334 (668)
Q Consensus 257 ~~~~g~~~~A~~-~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 334 (668)
+.-.|++++|.. .|++....... +..+...+..+...+.+.|++++|+..|+++.+.. +.+..++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~---------- 103 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQY---------- 103 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH----------
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH----------
Confidence 334567777777 77655432111 11145667788888888888888888888887653 123333333
Q ss_pred cchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCCcHHHHHHHH
Q 005943 335 FNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLP---KKDVVAWSGLIMGCTKHGLNSLAYLLFR 411 (668)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 411 (668)
+...+.+.|++++|.+.|+++. ..+..++..+...+...|++++|...++
T Consensus 104 ---------------------------l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 104 ---------------------------LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp ---------------------------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------------HHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444445555555555554433 1245566666667777777777777777
Q ss_pred HHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C---
Q 005943 412 DMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R--- 486 (668)
Q Consensus 412 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--- 486 (668)
++.......... +... +.... ...+ ...+..+...+ ..|++++|...|+++.+ |
T Consensus 157 ~~~~~~~~~~~~-~~~~-------~~~~~-----------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~ 215 (368)
T 1fch_A 157 DWLRYTPAYAHL-VTPA-------EEGAG-----------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI 215 (368)
T ss_dssp HHHHTSTTTGGG-CC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHhCcCcHHH-HHHH-------HHHhh-----------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc
Confidence 766543221110 0000 00000 0000 00000111112 44555555555554432 2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCM 565 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 565 (668)
+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++... .| +...+..+
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l 291 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNL 291 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHH
Confidence 24455555566666666666666666665531 223445666666666666666666666666532 23 35556666
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEM-PFKP------------DKTIWASMLKACETHNNTKLVSIIAEQLL 618 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 618 (668)
..+|.+.|++++|.+.++++ ...| ...+|..+..++...|++++|..++++.+
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 66666666666666666555 1111 14566666666666677766666665443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=151.00 Aligned_cols=233 Identities=9% Similarity=-0.006 Sum_probs=195.6
Q ss_pred cHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHH
Q 005943 421 NQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVG 497 (668)
Q Consensus 421 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 497 (668)
+...+..+...+.+.|++++|...++.+.+.. +.+...+..+..+|.+.|++++|+..|+++.+ .+...|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457777888899999999999999998875 56788899999999999999999999998764 357789999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEI-----------TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMV 566 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 566 (668)
|...|++++|+..++++.+. .|+.. .+..+...+...|++++|...++++.....-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 44432 233457788999999999999999986422222578999999
Q ss_pred HHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhH
Q 005943 567 DLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSL 644 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 644 (668)
.+|...|++++|.+.++++ . .+.+..+|..+..++...|++++|...++++++..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 2 3346889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 005943 645 SKVRKAGKKLGE 656 (668)
Q Consensus 645 ~~~~~~~~~~~~ 656 (668)
...++++.+..+
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999987654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-17 Score=169.74 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=107.8
Q ss_pred ccchHHHHHHHHcCCChhHHHHhhhhcC-------CCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHH
Q 005943 38 IFTGNNLLSMYADFTSLNDAHKLFDEMA-------RKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSA 110 (668)
Q Consensus 38 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 110 (668)
..+||+||+.|++.|++++|.++|++|. .||+.+||+||.+||+.|++++|.++|++|.+.|+. ||..|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~-PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-PDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CcHHHHHH
Confidence 4479999999999999999999998763 589999999999999999999999999999999988 99999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcC
Q 005943 111 VLKACSLSGDL-DLGRLIHERITREKLEYDTVLMNTLLDMYVKCG 154 (668)
Q Consensus 111 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 154 (668)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 99999999985 789999999999999999999999998766653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-16 Score=165.62 Aligned_cols=137 Identities=13% Similarity=0.105 Sum_probs=121.1
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhh-hhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSW-AASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS 324 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 324 (668)
-..+|+++|++|++.|++++|.++|+.|.+. ..|..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3568999999999999999999999988643 356899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCC
Q 005943 325 ALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLP 383 (668)
Q Consensus 325 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (668)
+|.++++.|... +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++...+.
T Consensus 206 LI~glcK~G~~~-e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDA-GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCH-HHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcH-HHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 999999998741 6789999999999999999999999988877766666655544443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=131.91 Aligned_cols=194 Identities=13% Similarity=0.088 Sum_probs=157.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 005943 454 EKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGV 529 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 529 (668)
+++...+..+...+.+.|++++|...|++..+ | +...+..+..++.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677888888999999999999999998764 3 5778889999999999999999999999985 45 45678888
Q ss_pred HHHhhcC-----------CCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 005943 530 LSACRHA-----------GLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWAS 596 (668)
Q Consensus 530 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 596 (668)
..++... |++++|...+++..+ ..| +...+..+..+|...|++++|+..|++. ....+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999984 356 4788899999999999999999999987 21178889999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+..++...|++++|...++++++..|+++.++..++.++...|++++|+..+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-14 Score=133.02 Aligned_cols=208 Identities=13% Similarity=0.049 Sum_probs=142.9
Q ss_pred cccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C----C----HhHHHHHHHHHHhcCC
Q 005943 434 CLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R----D----VVSWTGIIVGCGQNGR 503 (668)
Q Consensus 434 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~----~~~~~~l~~~~~~~~~ 503 (668)
..|++++|...++...+.. .+...+..+..+|...|++++|...+++..+ | + ...+..+...+...|+
T Consensus 17 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence 3333333333333333333 3444555555555555555555555555442 1 1 3566677777778888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLI 582 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 582 (668)
+++|+..+++..+. .|+.. .+...|++++|...++++.. ..| +...+..+...+...|++++|.+.+
T Consensus 95 ~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 95 LKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888888887773 45532 34455777888888887763 234 4667778888888888888888888
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 583 AEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 583 ~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+++ . .+.+...+..+...+...|++++|...++++++..|+++.++..++.+|...|++++|...+++..+..
T Consensus 163 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 877 2 234567788888888888888888888888888888888888888888888888888888888877654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-13 Score=140.22 Aligned_cols=396 Identities=11% Similarity=-0.058 Sum_probs=220.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhccc-CchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFE-CSCFTLSALVDMYSNCNVLCEARKLFDQYSSWA 277 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 277 (668)
.....|+.|...+...|++++|++.|++..+-.... ...... ....+|+.+...|...|++++|...+++.....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~----~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE----HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc----CccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 446679999999999999999999998765110000 000000 135678899999999999999999998875432
Q ss_pred hcC----CC-CeeeHHHHHHHHHh--CCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHH---HHhccccchHHHHHHHHH
Q 005943 278 ASA----YG-NVALWNSMISGYVL--NEQNEEAITLLSHIHSSGMCID-SYTFTSALKA---CINLLNFNSRFALQVHGL 346 (668)
Q Consensus 278 ~~~----~~-~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~---~~~~~~~~~~~a~~~~~~ 346 (668)
... .+ ...++..+..++.. .+++++|+..|++..+. .|+ ...+..+..+ +...++. +.+...++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~--~~al~~~~~ 200 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPS--QNAIDPLRQ 200 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCC--CCTHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHH--HHHHHHHHH
Confidence 211 11 12345555545544 45799999999998874 354 3333333333 3334455 566666666
Q ss_pred HHHhCCCCccchHHHHHHHHHh----cCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC
Q 005943 347 IVTSGYELDYIVGSNLIDLYAR----LGNVKSALELFHRLPK---KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQD 419 (668)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 419 (668)
..+.. +.+..++..+...+.. .++.++|.+.+++... .+..++..+...|...|++++|...+++..+...
T Consensus 201 al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p- 278 (472)
T 4g1t_A 201 AIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP- 278 (472)
T ss_dssp HHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-
Confidence 65543 2233444444444433 3566778777776542 3556677788888888888888888888776532
Q ss_pred CcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHH
Q 005943 420 VNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIV 496 (668)
Q Consensus 420 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 496 (668)
-+...+..+..++...+.... ... ...........+.++.|...++...+ .+...+..+..
T Consensus 279 ~~~~~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~ 342 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHH
Confidence 233344443333321111000 000 00000001112234566666665542 34567888999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcC
Q 005943 497 GCGQNGRAKEAIAYFQEMIQSRLKPNEI--TFLGVLS-ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAG 573 (668)
Q Consensus 497 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 573 (668)
.+...|++++|+..|++..+....|... .+..+.. .....|++++|+..|++.. .+.|+........
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~------- 412 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK------- 412 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH-------
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH-------
Confidence 9999999999999999999864333222 2233322 3457899999999999887 4466543332222
Q ss_pred ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 574 CFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 574 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
..+.++++.. . .+.+..+|..+..++...|++++|++.|+++++..|.+|.+...++
T Consensus 413 --~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 413 --DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2233334333 2 2346778999999999999999999999999999998887766554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-14 Score=136.50 Aligned_cols=229 Identities=11% Similarity=0.012 Sum_probs=192.6
Q ss_pred HHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHH
Q 005943 423 FIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCG 499 (668)
Q Consensus 423 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 499 (668)
..+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345556677888999999999999998875 45777888899999999999999999998763 36778899999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--------------HH-HhhcCCCHHHHHHHHHhcccccCCCCChhHHH
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNEI-TFLGV--------------LS-ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYY 563 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 563 (668)
..|++++|+..++++.+. .|+.. .+..+ .. .+...|++++|...++++... .+.+...+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 176 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHA 176 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 999999999999999985 34433 22222 22 377889999999999999853 233678899
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMW 641 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 641 (668)
.+...|.+.|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|.++.++..++.+|...|++
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 9999999999999999999987 2 3346778999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCC
Q 005943 642 DSLSKVRKAGKKLGE 656 (668)
Q Consensus 642 ~~a~~~~~~~~~~~~ 656 (668)
++|.+.++++.+..+
T Consensus 257 ~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999987655
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-13 Score=136.76 Aligned_cols=377 Identities=10% Similarity=0.034 Sum_probs=207.7
Q ss_pred HHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCH---HHHHHHHHHhhhhhhcCCCC
Q 005943 207 LIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVL---CEARKLFDQYSSWAASAYGN 283 (668)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~ 283 (668)
+...+.+.|++++|+++|++..+++ ++..+..+...|...|+. ++|...|++..+ .+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--------------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~------~~ 68 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--------------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD------TS 68 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--------------CCTGGGTCC--------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh------CC
Confidence 5667788899999999999876554 455666677777778888 899999988843 26
Q ss_pred eeeHHHHHHHHHhCC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccch-HHHHHHHHHHHHhCCCCccc
Q 005943 284 VALWNSMISGYVLNE-----QNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNS-RFALQVHGLIVTSGYELDYI 357 (668)
Q Consensus 284 ~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~ 357 (668)
...+..+...+...+ ++++|+..|++..+.|... .+..+-..+...+.... ..+...+......|. +.
T Consensus 69 ~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~ 142 (452)
T 3e4b_A 69 PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PE 142 (452)
T ss_dssp --CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TT
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HH
Confidence 667777777555555 6789999999988876433 44444444544443310 223333333333332 33
Q ss_pred hHHHHHHHHHhcCC----hHHHHHHHccCCCCChhhHHHHHHHHHhcC---CcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005943 358 VGSNLIDLYARLGN----VKSALELFHRLPKKDVVAWSGLIMGCTKHG---LNSLAYLLFRDMINSNQDVNQFIISSVLK 430 (668)
Q Consensus 358 ~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 430 (668)
....+...|...+. .+.+..+++.....++..+..|...|...| +.++|+..|++..+.|
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g------------- 209 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG------------- 209 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-------------
Confidence 44445555555553 333444444444445556666666666666 5556666666555544
Q ss_pred HhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc----CChHHHHHHhccCCCCCHhHHHHHHHH-H--HhcCC
Q 005943 431 VCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKC----GEIDDGLALFKFMPERDVVSWTGIIVG-C--GQNGR 503 (668)
Q Consensus 431 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~ 503 (668)
+++...+..+...|... +++++|...|++....+...+..+... + ...++
T Consensus 210 -----------------------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 210 -----------------------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp -----------------------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCC
T ss_pred -----------------------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Confidence 22333333344444333 466666666665552234455555555 3 45678
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC-----CHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cCC
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG-----LVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AGC 574 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 574 (668)
+++|+..|++..+.| +...+..+...|. .| ++++|..+|++.. .-+...+..|...|.. ..+
T Consensus 267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcC
Confidence 888888888887765 4555555665555 34 8888888887765 2345666666766665 347
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 575 FDDAEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 575 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
+++|...|++.-...+......+...|.. ..+.++|...|+++.+..+.+.......+......++.++|..+.++
T Consensus 338 ~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888888877323344455555555543 45788888888888876654433333333223344567777777776
Q ss_pred HHhc
Q 005943 651 GKKL 654 (668)
Q Consensus 651 ~~~~ 654 (668)
-++.
T Consensus 418 ~~~~ 421 (452)
T 3e4b_A 418 ELAA 421 (452)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.9e-14 Score=130.53 Aligned_cols=234 Identities=8% Similarity=-0.072 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCC--Cc----hhHHH
Q 005943 388 VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFE--KE----DITLT 461 (668)
Q Consensus 388 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 461 (668)
..+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+....+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 346667777778888888888888887776 66777777788888888888888888877664311 11 57788
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCC
Q 005943 462 SLIDMYLKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGL 538 (668)
Q Consensus 462 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 538 (668)
.+...|...|++++|...|++..+ |+. ..+...|++++|+..++++... .|+ ...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 888899999999999999887764 442 3466678899999999999884 454 4578888889999999
Q ss_pred HHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 539 VEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
+++|...++++... .+.+...+..+..+|.+.|++++|.+.++++ .. +.+...|..+...+.+.|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999853 2335788999999999999999999999987 32 34577888999999999999999999999
Q ss_pred HHhcC------CCCchhHHHHHHH
Q 005943 617 LLATS------PEDPSKYVMLSNV 634 (668)
Q Consensus 617 ~~~~~------p~~~~~~~~l~~~ 634 (668)
+.+.. |.+..++..+..+
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhChhhcCCCchHHHHHHHHHh
Confidence 99988 8877777766653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=130.86 Aligned_cols=240 Identities=8% Similarity=-0.059 Sum_probs=182.8
Q ss_pred cCCcHHHHHHHHHHHHcCCC---CcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 005943 400 HGLNSLAYLLFRDMINSNQD---VNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDG 476 (668)
Q Consensus 400 ~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 476 (668)
.|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677788888777765321 134566677777777888888888888777764 45677888888999999999999
Q ss_pred HHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccccc
Q 005943 477 LALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEY 553 (668)
Q Consensus 477 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 553 (668)
...|++..+ | +...+..+...+...|++++|+..++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999988764 3 5778889999999999999999999999984 555554445555567779999999999887753
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 005943 554 GLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSK 627 (668)
Q Consensus 554 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 627 (668)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...+..+...+.+.|++++|...++++.+..|.+...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23344444 4777778888889999999877 33332 4678888899999999999999999999999987554
Q ss_pred HHHHHHHHHhcCChhhHHHHH
Q 005943 628 YVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 628 ~~~l~~~~~~~g~~~~a~~~~ 648 (668)
+ +.++...|++++|++.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66788999999998876
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-13 Score=123.89 Aligned_cols=199 Identities=11% Similarity=-0.004 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSAC 533 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 533 (668)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566677777888888888888877653 356678888888888899999999998888753 33566788888888
Q ss_pred hcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHH
Q 005943 534 RHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a 610 (668)
...|++++|.++++++... +..| +...+..+..+|...|++++|.+.++++ . .+.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999888751 3455 4667788888889999999999988877 2 233577788888888899999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 611 SIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
...++++.+..|.+...+..++.++...|++++|.++++++.+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 99999999999988888999999999999999999999998877663
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.7e-13 Score=120.44 Aligned_cols=199 Identities=8% Similarity=-0.049 Sum_probs=156.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA 532 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 532 (668)
+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445566677777778888888877776553 346677778888888888888888888888752 3356678888888
Q ss_pred hhcC-CCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHH
Q 005943 533 CRHA-GLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTK 608 (668)
Q Consensus 533 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~ 608 (668)
+... |++++|...++++... +..|+ ...+..+..++...|++++|.+.++++ ... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 8999999888888752 33443 567788888888899999998888877 223 35777888888888899999
Q ss_pred HHHHHHHHHHhcCC-CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 609 LVSIIAEQLLATSP-EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 609 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+|...++++.+..| .++..+..++..+...|+.++|..+++.+.+..+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 99999999998888 8888888888888889999999999888877665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-12 Score=119.90 Aligned_cols=224 Identities=11% Similarity=-0.036 Sum_probs=151.2
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 386 DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 386 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
+..++..+...+...|++++|...|++..+.+ +...+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------------------------ENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHH
Confidence 44555666666666777777777776665521 2233444444
Q ss_pred HHHh----cCChHHHHHHhccCCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 005943 466 MYLK----CGEIDDGLALFKFMPE-RDVVSWTGIIVGCGQ----NGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH- 535 (668)
Q Consensus 466 ~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 535 (668)
.|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 5555555555554432 244555666666666 777777777777777754 55666677777777
Q ss_pred ---CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----h
Q 005943 536 ---AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AGCFDDAEQLIAEMPFKPDKTIWASMLKACET----H 604 (668)
Q Consensus 536 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 604 (668)
.+++++|...+++.... + +...+..+...|.. .+++++|.+.+++.-...+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 77888888887777643 2 45566667777776 77888888888776322356667777777777 7
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHHhcCC
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT----LGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 656 (668)
+++++|...++++.+..| +..+..++.+|.. .|++++|.+.+++..+.|.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888888888887765 5677888888888 8888888888888877665
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-13 Score=125.09 Aligned_cols=198 Identities=9% Similarity=0.056 Sum_probs=126.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA 532 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 532 (668)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566666667777777766666543 245566677777777777777777777777642 3345667777777
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHH
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a 610 (668)
+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++ . .+.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777642 2234666777777777778888877777766 2 233566677777777777888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 611 SIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...++++.+..|.++.++..++.+|...|++++|.+.++++.+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 8888888777777777777888888888888888888877776655
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-13 Score=125.98 Aligned_cols=174 Identities=11% Similarity=0.014 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcC
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHA 536 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 536 (668)
..+...|...|++++|...|++..+ .+...+..+...|...|++++|+..+++..+. .| +...+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHH
Confidence 3344444444444444444443321 12334444444444444444444444444442 22 222333333122223
Q ss_pred CCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGC---FDDAEQLIAEM----PFKPD------KTIWASMLKACE 602 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~ 602 (668)
+++++|...++++.+. .|+ ...+..+..++...|+ +++|...++++ ...|+ ...|..+...+.
T Consensus 156 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 156 KEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 3555555555554421 222 3444444444444444 44444444443 11122 134555666677
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 603 THNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
..|++++|.+.++++++.+|+++.+...+.......+
T Consensus 233 ~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 7777777777777777777777777766666554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-12 Score=122.59 Aligned_cols=222 Identities=9% Similarity=-0.035 Sum_probs=170.3
Q ss_pred hccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC----HhHHHHHHHHHHhcCChH
Q 005943 432 CSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD----VVSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 432 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~ 505 (668)
+...|++++|...++...+.. +.+...+..+..+|...|++++|+..+++..+ ++ ...|..+...+...|+++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 334444444444444444432 33455777788888889999999888887654 22 234888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
+|+..+++..+.. +.+...+..+...+...|++++|...+++... ..| +...+..+...+...+++++|.+.+++
T Consensus 92 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 92 LAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999853 33456899999999999999999999999984 355 467777787344445699999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 585 M-PFKP-DKTIWASMLKACETHNN---TKLVSIIAEQLLATS---PED-----PSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 585 ~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
+ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..+|..++.+|...|++++|.+.++++
T Consensus 168 a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8 3334 46777788888888888 888999999999854 442 257888999999999999999999999
Q ss_pred HhcCCCC
Q 005943 652 KKLGEKK 658 (668)
Q Consensus 652 ~~~~~~~ 658 (668)
.+..+.+
T Consensus 248 l~~~p~~ 254 (272)
T 3u4t_A 248 LALDPTN 254 (272)
T ss_dssp HHHCTTC
T ss_pred HhcCccH
Confidence 9887733
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-12 Score=118.73 Aligned_cols=206 Identities=14% Similarity=0.008 Sum_probs=151.2
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDM 466 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 466 (668)
...|..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 3455666666666666666666666665432 2344556666666
Q ss_pred HHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHH
Q 005943 467 YLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEA 542 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 542 (668)
|...|++++|.+.|+++.+ .+...+..+...+...|++++|+..++++.+.+..|+ ...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 6667777777776665542 2456677778888888888888888888877434554 45677788888889999999
Q ss_pred HHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 005943 543 WTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLAT 620 (668)
Q Consensus 543 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 620 (668)
...++++... .+.+...+..++.+|...|++++|...++++ .. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999888743 2235778888999999999999999999887 33 346667888888889999999999999999999
Q ss_pred CCCCchhHHH
Q 005943 621 SPEDPSKYVM 630 (668)
Q Consensus 621 ~p~~~~~~~~ 630 (668)
.|+++.....
T Consensus 239 ~p~~~~~~~~ 248 (252)
T 2ho1_A 239 YPGSLEYQEF 248 (252)
T ss_dssp CTTSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9998766543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-13 Score=123.81 Aligned_cols=208 Identities=11% Similarity=0.065 Sum_probs=149.9
Q ss_pred HHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCh
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRA 504 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 504 (668)
+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp -------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH
Confidence 3333444444444444444444322 33456666677777777777777777776543 3566788888888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 505 KEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 505 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+.+.|++++|.+.+++
T Consensus 108 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 108 KEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999988863 446678888888999999999999999998843 233578888999999999999999999988
Q ss_pred C-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 585 M-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 585 ~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
+ . .+.+...+..+...+...|++++|...++++.+..|+++.++..+..+....|
T Consensus 185 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 185 VTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 7 2 23467788899999999999999999999999999999988887776554443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-12 Score=112.03 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=142.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCM 565 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 565 (668)
+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++.+.|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567888999999999999999999999885 45 4567888889999999999999999988743 23346777888
Q ss_pred HHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 566 VDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
...+...+++++|.+.+.+. . .+.+...+..+...+.+.|++++|++.++++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999887 2 334677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 005943 644 LSKVRKAGKKLGE 656 (668)
Q Consensus 644 a~~~~~~~~~~~~ 656 (668)
|++.+++..+..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999887655
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-12 Score=124.33 Aligned_cols=245 Identities=10% Similarity=0.052 Sum_probs=191.1
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccc-hHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLAS-LRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
...|..+...+.+.|++++|+..+++.+... +-+...|..+..++...|+ +++|...++++.+.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3457777778888888888888888887754 2345667777777777886 888888888888775 456778888888
Q ss_pred HHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc-CCCHH
Q 005943 466 MYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRH-AGLVE 540 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~g~~~ 540 (668)
++...|++++|+..|+++.+ .+...|..+..++.+.|++++|+..++++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 89999999999999988764 36778888899999999999999999999985 44 46678888888888 56557
Q ss_pred HH-----HHHHHhcccccCCCC-ChhHHHHHHHHhhhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhC------
Q 005943 541 EA-----WTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAG--CFDDAEQLIAEMPFKP-DKTIWASMLKACETHN------ 605 (668)
Q Consensus 541 ~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~------ 605 (668)
+| +..+++... +.| +...|..+..+|.+.| ++++|++.+.++...| +...+..+...+.+.|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 477777773 356 4678888888888888 6889998888874444 5567777888877753
Q ss_pred ---CHHHHHHHHHHH-HhcCCCCchhHHHHHHHHHhc
Q 005943 606 ---NTKLVSIIAEQL-LATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 606 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 638 (668)
..++|+++++++ .+.+|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258899999999 889999988898888776654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-11 Score=126.21 Aligned_cols=346 Identities=9% Similarity=-0.044 Sum_probs=186.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHhCCCCccchHHHHHHHHH
Q 005943 289 SMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNF-NSRFALQVHGLIVTSGYELDYIVGSNLIDLYA 367 (668)
Q Consensus 289 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (668)
.+...+.+.|++++|+.+|++..+.|..+ .+..+-..+...|.. +.+.+...+....+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~---A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSE---AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCT---GGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35666777888888888888887765322 222222222222221 014555555555433 3344444444333
Q ss_pred hcC-----ChHHHHHHHccCCCC-ChhhHHHHHHHHHhcCCcH---HHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 368 RLG-----NVKSALELFHRLPKK-DVVAWSGLIMGCTKHGLNS---LAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 368 ~~~-----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
..+ +.++|...|++..++ +...+..|...|...+... .+.+.+......|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 333 456666666655443 3445666666665554322 34444444444443 22333333444444444
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---ChHHHHHHhccCCC---CCHhHHHHHHHHHHhc----CChHHHH
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG---EIDDGLALFKFMPE---RDVVSWTGIIVGCGQN----GRAKEAI 508 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~ 508 (668)
+++......+.+.-...++..+..+...|...| +.++|+..|++..+ ++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444433333333222334446667777777777 77777777776543 3333445566666544 5777788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-h--hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcC-----ChHHHHH
Q 005943 509 AYFQEMIQSRLKPNEITFLGVLSA-C--RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAG-----CFDDAEQ 580 (668)
Q Consensus 509 ~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~ 580 (668)
..|++.. .| +...+..+... + ...+++++|..+|++.... | +...+..|...|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8877776 32 33344444444 2 4577788888888777642 3 5566666666666 44 7788888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHH
Q 005943 581 LIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT----LGMWDSLSKVRKAGK 652 (668)
Q Consensus 581 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 652 (668)
.|++.- ..+......+...|.. ..++++|...|+++.+. .++.....|+.+|.. ..+.++|..+++...
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 887777 5566666666666654 33778888888777653 345577777777764 357778888887777
Q ss_pred hcCC
Q 005943 653 KLGE 656 (668)
Q Consensus 653 ~~~~ 656 (668)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 7665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=8e-12 Score=114.29 Aligned_cols=196 Identities=14% Similarity=0.066 Sum_probs=145.1
Q ss_pred hccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhc-CChHHH
Q 005943 432 CSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQN-GRAKEA 507 (668)
Q Consensus 432 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a 507 (668)
+...|++++|...++.+.+.. +.+...+..+...|...|++++|...+++..+ .+...+..+...+... |++++|
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A 96 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAES 96 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHH
Confidence 333333333333333333332 33455666667777777777777777776542 3566777888888899 999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 508 IAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 508 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+..++++.+.+..|+ ...+..+..++...|++++|...++++... .| +...+..++.++.+.|++++|.+.++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999888433454 457888888999999999999999998743 34 4788889999999999999999999887
Q ss_pred -C-CC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 005943 586 -P-FK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVML 631 (668)
Q Consensus 586 -~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 631 (668)
. .+ .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 174 QSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 2 23 4666777777778899999999999999999999988766544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=127.37 Aligned_cols=227 Identities=9% Similarity=0.066 Sum_probs=191.9
Q ss_pred HHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hHHHHHHhccCCC--C-CHhHHHHHHHHH
Q 005943 423 FIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGE-IDDGLALFKFMPE--R-DVVSWTGIIVGC 498 (668)
Q Consensus 423 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 498 (668)
..+..+..++...|++++|...++.+.+.. +-+...|+.+..++...|+ +++|+..|++... | +...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345556667778899999999999999876 5567888999999999997 9999999998874 3 677899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhh-cCCh
Q 005943 499 GQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQ-AGCF 575 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 575 (668)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++.. ..| +...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999995 45 567899999999999999999999999984 356 57899999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhhC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-------
Q 005943 576 DDA-----EQLIAEM-PFKP-DKTIWASMLKACETHN--NTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG------- 639 (668)
Q Consensus 576 ~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 639 (668)
++| ++.+++. ...| +...|..+...+...| ++++|.+.++++ +.+|+++.++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 787 4777766 3344 6778888888888877 689999999998 899999999999999999875
Q ss_pred --ChhhHHHHHHHH-HhcCC
Q 005943 640 --MWDSLSKVRKAG-KKLGE 656 (668)
Q Consensus 640 --~~~~a~~~~~~~-~~~~~ 656 (668)
.+++|+++++++ .+..+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 359999999998 66544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-11 Score=115.99 Aligned_cols=227 Identities=8% Similarity=-0.098 Sum_probs=162.2
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHccCCCC-ChhhHHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 005943 355 DYIVGSNLIDLYARLGNVKSALELFHRLPKK-DVVAWSGLIMGCTK----HGLNSLAYLLFRDMINSNQDVNQFIISSVL 429 (668)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 429 (668)
++..+..+...+...|++++|...|++..++ +..++..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4566777888999999999999999987665 56678888888888 899999999998887664 344444444
Q ss_pred HHhcc----ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHh----c
Q 005943 430 KVCSC----LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQ----N 501 (668)
Q Consensus 430 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~ 501 (668)
..+.. .+++++|...++...+. .+...+..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~----------------------------------~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL----------------------------------KYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------------TCHHHHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc----------------------------------CCccHHHHHHHHHHcCCCcc
Confidence 44444 44444444444444333 234455556666666 7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cC
Q 005943 502 GRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH----AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AG 573 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 573 (668)
+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+. .+...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 77888888888877754 45566666666766 78888888888887743 245677778888888 88
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCc
Q 005943 574 CFDDAEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 574 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
++++|.+.+++.-...+...+..+...+.. .+++++|...++++.+..|++.
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 888888888876222336677777777877 8889999999999988887653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-13 Score=133.68 Aligned_cols=262 Identities=12% Similarity=-0.005 Sum_probs=177.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCCCCcH----HHHHHHHHHhccccchHhHHHHHHHHHHh----C-CCCchhHHHH
Q 005943 392 GLIMGCTKHGLNSLAYLLFRDMINSNQDVNQ----FIISSVLKVCSCLASLRRGKQVHAFCVKR----G-FEKEDITLTS 462 (668)
Q Consensus 392 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 462 (668)
.+...+...|++++|...|++..+.+.. +. ..+..+...+...|++++|...+++..+. + .+.....+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555666666666666666554322 11 34555555566666666666666655433 1 1223445666
Q ss_pred HHHHHHhcCChHHHHHHhccCCC-----C----CHhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE-----R----DVVSWTGIIVGCGQNGR-----------------AKEAIAYFQEMIQ 516 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~ 516 (668)
+...|...|++++|...+++..+ . ....+..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77777778888888777776542 1 23467777778888888 8888888877654
Q ss_pred C----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 005943 517 S----RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP- 586 (668)
Q Consensus 517 ~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 586 (668)
. +-.|. ..++..+...+...|++++|...+++......-.++ ...+..+..+|...|++++|.+.+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11122 236777888888999999999988887643111112 2377888899999999999999888761
Q ss_pred ---CCC----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 587 ---FKP----DKTIWASMLKACETHNNTKLVSIIAEQLLATSPE------DPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 587 ---~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
... ...++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 2456777888889999999999999999885433 244788899999999999999999998865
Q ss_pred c
Q 005943 654 L 654 (668)
Q Consensus 654 ~ 654 (668)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=123.17 Aligned_cols=220 Identities=11% Similarity=-0.037 Sum_probs=180.5
Q ss_pred hccccchHhHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChH
Q 005943 432 CSCLASLRRGKQVHAFCVKRGF---EKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 432 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 505 (668)
....+++++|...++.+.+... +.+...+..+...+...|++++|...|++..+ .+...|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4556899999999999987632 22466788899999999999999999998763 35788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+|+..|+++.+.. +.+...+..+..++...|++++|...++++.. ..|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999852 33567889999999999999999999999984 3566555555566667789999999999766
Q ss_pred -C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 586 -P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE----DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 586 -~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
. .+++...+ .++..+...++.++|...++++.+..|. ++..+..++.+|...|++++|...++++.+..+
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 2 23343333 4666778888999999999999886663 367899999999999999999999999988765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.4e-13 Score=134.81 Aligned_cols=193 Identities=11% Similarity=0.005 Sum_probs=167.3
Q ss_pred CCchhHHHHHHHHHHhcCCh-HHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005943 454 EKEDITLTSLIDMYLKCGEI-DDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGV 529 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 529 (668)
+.+...+..+..+|...|++ ++|++.|++..+ | +...|..+..+|...|++++|+..|++..+. .|+...+..+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l 176 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNL 176 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHH
Confidence 34667777788888888888 888888887653 3 4678889999999999999999999999984 6887888999
Q ss_pred HHHhhcC---------CCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhc--------CChHHHHHHHHhC-CCCC-
Q 005943 530 LSACRHA---------GLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQA--------GCFDDAEQLIAEM-PFKP- 589 (668)
Q Consensus 530 l~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p- 589 (668)
..++... |++++|...+++..+. .| +...|..+..+|... |++++|.+.|++. ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 253 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK 253 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC
Confidence 9999999 9999999999999843 45 578899999999998 9999999999988 3345
Q ss_pred ---CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 590 ---DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 590 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
+...|..+..++...|++++|.+.|+++.+.+|+++.++..++.++...|++++|.+.+.++
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78889999999999999999999999999999999999999999999999999999765443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-12 Score=128.02 Aligned_cols=291 Identities=12% Similarity=0.030 Sum_probs=158.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHccCCC--C-C----hhhHHHHHHHHHhcCCcHHHHHHHHHHHHc----CCCCc-HH
Q 005943 356 YIVGSNLIDLYARLGNVKSALELFHRLPK--K-D----VVAWSGLIMGCTKHGLNSLAYLLFRDMINS----NQDVN-QF 423 (668)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~ 423 (668)
...+......+...|++++|...|++..+ + + ...+..+...+...|++++|...+++.... +..|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33444556667777777777777766542 2 2 235666667777777777777777765432 11111 33
Q ss_pred HHHHHHHHhccccchHhHHHHHHHHHHhCC----C-CchhHHHHHHHHHHhcCC--------------------hHHHHH
Q 005943 424 IISSVLKVCSCLASLRRGKQVHAFCVKRGF----E-KEDITLTSLIDMYLKCGE--------------------IDDGLA 478 (668)
Q Consensus 424 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~--------------------~~~A~~ 478 (668)
.+..+...+...|++++|...++...+... + ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 455555666666777777776665544310 0 012355556666666666 666665
Q ss_pred HhccCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhcCCCHHHHHH
Q 005943 479 LFKFMPE-----R----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL-KPN----EITFLGVLSACRHAGLVEEAWT 544 (668)
Q Consensus 479 ~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~ 544 (668)
.+.+... + ....+..+...+...|++++|+..+++..+..- .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 5554321 1 123455556666666666666666666554210 111 1245555666666666666666
Q ss_pred HHHhcccccCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhhCCHHHHHH
Q 005943 545 IFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP----FKPD----KTIWASMLKACETHNNTKLVSI 612 (668)
Q Consensus 545 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~ 612 (668)
.+++......-.++ ..++..+...|...|++++|.+.+++.. ..++ ..++..+...+...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66655422110111 3455566666666666666666665541 1111 3345555555666666666666
Q ss_pred HHHHHHhcCCCC------chhHHHHHHHHHhcCChhhHHH
Q 005943 613 IAEQLLATSPED------PSKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 613 ~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 646 (668)
.++++.+..+.. ..++..++.++...|+...+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 666666666555 2345555555655555554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-12 Score=115.47 Aligned_cols=206 Identities=14% Similarity=0.019 Sum_probs=104.2
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 386 DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 386 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666777777777777777777776543 2233444444444555555555555555544443 223334444444
Q ss_pred HHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHH
Q 005943 466 MYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWT 544 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~ 544 (668)
++...+.. ... .+...|++++|+..+++..+. .|+ ...+..+..++...|++++|+.
T Consensus 82 ~~~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 82 AYVALYRQ-----------AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHH
Confidence 44443000 000 000016666666666666663 343 4456666666666666666666
Q ss_pred HHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 005943 545 IFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLL 618 (668)
Q Consensus 545 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 618 (668)
.|++..+. . .+...+..+..+|...|++++|...++++ ...| +...+..+...+.+.|++++|...+++..
T Consensus 140 ~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 140 SLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66666643 3 45566666666666666666666666665 2223 45556666666666666666666666543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-12 Score=124.43 Aligned_cols=262 Identities=13% Similarity=0.038 Sum_probs=179.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCc---HHHHHHHHHHhccccchHhHHHHHHHHHHh----CCC-CchhHHHHHHH
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVN---QFIISSVLKVCSCLASLRRGKQVHAFCVKR----GFE-KEDITLTSLID 465 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 465 (668)
...+...|++++|...|++..+...... ...+..+...+...|++++|...++...+. +.. .....+..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4445556666666666666655432111 234555555666666666666666554432 211 12445667777
Q ss_pred HHHhcCChHHHHHHhccCCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH
Q 005943 466 MYLKCGEIDDGLALFKFMPE-----RD----VVSWTGIIVGCGQNGR--------------------AKEAIAYFQEMIQ 516 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~ 516 (668)
.|...|++++|...+++..+ ++ ...+..+...+...|+ +++|+..+++..+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 78888888888877776542 12 3367777778888888 8888888877654
Q ss_pred C----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 005943 517 S----RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP- 586 (668)
Q Consensus 517 ~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 586 (668)
. +-.|. ...+..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11222 236777888889999999999998887643111112 3478888899999999999999988761
Q ss_pred ---CCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 587 ---FKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPED------PSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 587 ---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1122 4567778888999999999999999998854432 44788999999999999999999999876
Q ss_pred cC
Q 005943 654 LG 655 (668)
Q Consensus 654 ~~ 655 (668)
..
T Consensus 332 ~~ 333 (338)
T 3ro2_A 332 IS 333 (338)
T ss_dssp C-
T ss_pred HH
Confidence 53
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-09 Score=109.66 Aligned_cols=217 Identities=8% Similarity=-0.053 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 005943 404 SLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGK-QVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKF 482 (668)
Q Consensus 404 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 482 (668)
+++..+|++.+... +-....|.....-+...|+.+.|. .+++..... ++.+...+-..+....+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556777776653 346667777777777778888886 899888764 355666677778888888999999999887
Q ss_pred CCC-------------CC------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc-
Q 005943 483 MPE-------------RD------------VVSWTGIIVGCGQNGRAKEAIAYFQEMIQS-RLKPNEITFLGVLSACRH- 535 (668)
Q Consensus 483 ~~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~- 535 (668)
+.+ |+ ...|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 753 21 235777777777888999999999999875 2 1122333322222223
Q ss_pred CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhhCCHHHH
Q 005943 536 AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP----DKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 536 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a 610 (668)
.++.+.|..+|+...+. ++-+...+..+++.....|+.+.|..+|++. ...| ....|...+.--.+.|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35689999999999864 3335666778888888899999999999987 2233 345788888888889999999
Q ss_pred HHHHHHHHhcCCCCc
Q 005943 611 SIIAEQLLATSPEDP 625 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~ 625 (668)
..+.+++.+..|+++
T Consensus 561 ~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHhCCCCc
Confidence 999999999999875
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-12 Score=127.72 Aligned_cols=267 Identities=12% Similarity=0.006 Sum_probs=157.4
Q ss_pred CCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCc---cchHHHHHHHHHhcCChHHHHHHHccCCC-----C---
Q 005943 317 IDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELD---YIVGSNLIDLYARLGNVKSALELFHRLPK-----K--- 385 (668)
Q Consensus 317 p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~--- 385 (668)
+....+...-..+...|++ +.|...++...+...... ..++..+...+...|++++|...+++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDC--RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3444555556666667777 777777777766532111 24555666677777777777776665431 1
Q ss_pred -ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCC----C-CcHHHHHHHHHHhccccc--------------------hH
Q 005943 386 -DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQ----D-VNQFIISSVLKVCSCLAS--------------------LR 439 (668)
Q Consensus 386 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~-~~~~~~~~ll~~~~~~~~--------------------~~ 439 (668)
...++..+...+...|++++|...+++..+... . ....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 123556666677777777777777776654211 0 112355566666667777 77
Q ss_pred hHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----HhHHHHHHHHHHhcCChH
Q 005943 440 RGKQVHAFCVKR----GFE-KEDITLTSLIDMYLKCGEIDDGLALFKFMPE-----RD----VVSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 440 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~ 505 (668)
+|...+....+. +.. ....++..+...|...|++++|...+++..+ ++ ...+..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 777776655432 111 1123556666777777777777777766542 11 225666667777777777
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChH
Q 005943 506 EAIAYFQEMIQS----RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 506 ~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~ 576 (668)
+|+..+++..+. +-.+. ..++..+...+...|++++|...+++......-.++ ..++..+..+|.+.|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 777777766542 11111 235666666777777777777777766532111111 445666777777777777
Q ss_pred HHHHHHHhC
Q 005943 577 DAEQLIAEM 585 (668)
Q Consensus 577 ~A~~~~~~~ 585 (668)
+|.+.+++.
T Consensus 325 ~A~~~~~~a 333 (406)
T 3sf4_A 325 QAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-09 Score=112.08 Aligned_cols=408 Identities=11% Similarity=0.008 Sum_probs=275.8
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCC---hhHHHHHHHHHHhCC-CCCCHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQ---NEEAITLLSHIHSSG-MCIDSYT 321 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g-~~p~~~t 321 (668)
|...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ ++.+..+|++.+... ..|+...
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 7889999999999999999999999999763 44456678888888888888 999999999998764 2478877
Q ss_pred HHHHHHHHHhccccc------hHHHHHHHHHHHH-hCC-CCc-cchHHHHHHHHH---------hcCChHHHHHHHccCC
Q 005943 322 FTSALKACINLLNFN------SRFALQVHGLIVT-SGY-ELD-YIVGSNLIDLYA---------RLGNVKSALELFHRLP 383 (668)
Q Consensus 322 ~~~ll~~~~~~~~~~------~~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 383 (668)
|..-+....+.++.. .+.+..+|+.... .|. .++ ..+|...+.... ..++++.+.++|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 777766555544321 1345577776554 466 564 357777766543 2345778889998876
Q ss_pred CCCh----hhHH---HHHHHHH----------hcCCcHHHHHHHHHHHH--cCCC---------------C-----cH--
Q 005943 384 KKDV----VAWS---GLIMGCT----------KHGLNSLAYLLFRDMIN--SNQD---------------V-----NQ-- 422 (668)
Q Consensus 384 ~~~~----~~~~---~l~~~~~----------~~~~~~~a~~~~~~m~~--~~~~---------------~-----~~-- 422 (668)
.-.. .+|. .+..... ...+++.|...+.++.. .++. | +.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5211 2222 2221110 01123334455554332 1110 1 11
Q ss_pred -HHHHHHHHHhcccc-------chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH-HHhccCCC--C-CHhH
Q 005943 423 -FIISSVLKVCSCLA-------SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGL-ALFKFMPE--R-DVVS 490 (668)
Q Consensus 423 -~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~--~-~~~~ 490 (668)
..|...+.---..+ ..+.+..+|++.... ++.....|-..+..+.+.|+.++|. .+|++... | +...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 22333332211111 123455667777665 3556777777788888889998996 99987764 4 4556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRL---------KPN------------EITFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
|-..+...-+.|++++|..+|+++.+... .|+ ...|...+....+.|+.+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77788888899999999999999987410 132 235777777778889999999999999
Q ss_pred ccccCCCCChhHHHHHHHHhhhcC-ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC---
Q 005943 550 KPEYGLEPHLEHYYCMVDLLGQAG-CFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE--- 623 (668)
Q Consensus 550 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--- 623 (668)
.+. ...+....|...+..-.+.| +.+.|.++|+.. ..+.+...|...+......|+.+.|..+|++++...|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 853 11223455554444444544 589999999987 23345666778888888899999999999999998773
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 005943 624 DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKK 658 (668)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 658 (668)
....|..++..-.+.|+.+.+.++.+++.+.-+++
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 45678888888899999999999999999887743
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-11 Score=126.79 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=144.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCM 565 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 565 (668)
...|+.|...|.+.|++++|+..|++.++. .|+ ...+..+..++.+.|++++|+..|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 457888999999999999999999999884 565 56889999999999999999999999884 4664 7889999
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 566 VDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|++.|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999987 4444 677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 005943 644 LSKVRKAGKKL 654 (668)
Q Consensus 644 a~~~~~~~~~~ 654 (668)
|.+.++++.+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=122.56 Aligned_cols=225 Identities=8% Similarity=-0.029 Sum_probs=154.0
Q ss_pred HHhccccchHhHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCChHHHHHHhccCCC-----CC-----HhHHHHH
Q 005943 430 KVCSCLASLRRGKQVHAFCVKR----GFEK-EDITLTSLIDMYLKCGEIDDGLALFKFMPE-----RD-----VVSWTGI 494 (668)
Q Consensus 430 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~l 494 (668)
..+...|++++|...++...+. +-++ ...++..+...|...|+++.|...+.+..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445566677777666666543 1111 235667777778888888877777765542 11 3467778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhccccc---CCCC-ChhHHHHH
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQS----RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEY---GLEP-HLEHYYCM 565 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l 565 (668)
...|...|++++|+..+++..+. +-.+. ..++..+..++...|++++|...+++...-. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 88888888999998888887753 11111 1367778888889999999998888876410 2213 36678888
Q ss_pred HHHhhhcCChHHHHHHHHhCC----C--CC-CHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEMP----F--KP-DKTIWASMLKACETHNN---TKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~----~--~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
..+|.+.|++++|.+.+++.- . .| ....+..+...+...|+ .++|..++++. ...|....++..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 889999999999998888761 1 12 12234556666777888 77777777765 33344456788899999
Q ss_pred HhcCChhhHHHHHHHHHhcC
Q 005943 636 ATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~~ 655 (668)
...|++++|..++++..+..
T Consensus 350 ~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.6e-11 Score=104.33 Aligned_cols=163 Identities=12% Similarity=0.064 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhh
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLG 570 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 570 (668)
+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344444555555555555555544421 223445555555555666666666666655532 1224555666666666
Q ss_pred hcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 571 QAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777766665 1 23456667777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCC
Q 005943 649 KAGKKLGE 656 (668)
Q Consensus 649 ~~~~~~~~ 656 (668)
+++.+..+
T Consensus 168 ~~~~~~~~ 175 (186)
T 3as5_A 168 KKANELDE 175 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCC
Confidence 88776544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-12 Score=122.68 Aligned_cols=238 Identities=13% Similarity=0.132 Sum_probs=134.4
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHc-------CCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHh------CC
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINS-------NQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKR------GF 453 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 453 (668)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++...+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777888888888888888888887652 11222233334444444444444444444443322 00
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHH
Q 005943 454 EKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS------RLKPN-EITF 526 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~ 526 (668)
.| .....+..+...|...|++++|+..++++.+. +-.|+ ...+
T Consensus 107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 00 01234555666666666666666666666553 11222 2356
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhccccc-----CCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC----------CCCC
Q 005943 527 LGVLSACRHAGLVEEAWTIFTSMKPEY-----GLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP----------FKPD 590 (668)
Q Consensus 527 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~ 590 (668)
..+...+...|++++|..+++++.... +..| ...++..+..+|...|++++|.+.++++. ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 666777777777777777777765321 1122 24566777777777788888777776651 1111
Q ss_pred -------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 591 -------KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 591 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
...+..+...+...+.+.++...++.+....|....++..++.+|...|++++|.+++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1122223333445566777777888888888888888999999999999999999999887654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=124.14 Aligned_cols=234 Identities=12% Similarity=-0.009 Sum_probs=146.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHc----CC-CCcHHHHHHHHHHhccccchHhHHHHHHHHHHh----C-CCCchhH
Q 005943 390 WSGLIMGCTKHGLNSLAYLLFRDMINS----NQ-DVNQFIISSVLKVCSCLASLRRGKQVHAFCVKR----G-FEKEDIT 459 (668)
Q Consensus 390 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 459 (668)
+..+...|...|++++|...+++.... +. ......+..+...+...|++++|...++...+. + .+.....
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444444455555555544444321 11 111233444444455555555555555444332 1 1112345
Q ss_pred HHHHHHHHHhcCC-----------------hHHHHHHhccCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 005943 460 LTSLIDMYLKCGE-----------------IDDGLALFKFMPE-----R----DVVSWTGIIVGCGQNGRAKEAIAYFQE 513 (668)
Q Consensus 460 ~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 513 (668)
+..+...|...|+ +++|...+++..+ . ....+..+...+...|++++|+..+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5566666777777 6666666655432 1 234677778888888999999888888
Q ss_pred HHHCCC-CCC----HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC----ChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 514 MIQSRL-KPN----EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP----HLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 514 m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
..+..- .++ ..++..+...+...|++++|...+++......-.. ...++..+..+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 776310 011 12677888889999999999999888764311111 146778888999999999999999887
Q ss_pred CC-C---CC----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 585 MP-F---KP----DKTIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 585 ~~-~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
.. . .+ ...++..+...+...|++++|...++++.++.+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 61 1 11 1346777888899999999999999999987654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-10 Score=110.15 Aligned_cols=217 Identities=8% Similarity=0.045 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhc-------cccch-------HhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 005943 404 SLAYLLFRDMINSNQDVNQFIISSVLKVCS-------CLASL-------RRGKQVHAFCVKRGFEKEDITLTSLIDMYLK 469 (668)
Q Consensus 404 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 469 (668)
++|..+|++.+... +-+...|..+...+. ..|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777766542 334444544444443 23443 5666666665552112334455566666666
Q ss_pred cCChHHHHHHhccCCC--CC-Hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hcCCCHHHHHH
Q 005943 470 CGEIDDGLALFKFMPE--RD-VV-SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSAC-RHAGLVEEAWT 544 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 544 (668)
.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666665543 22 22 55566666666666666666666666532 12222333222221 12466666666
Q ss_pred HHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 005943 545 IFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P---FKP--DKTIWASMLKACETHNNTKLVSIIAEQL 617 (668)
Q Consensus 545 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 617 (668)
+|++..+. .| +...|..++..+.+.|++++|..+|++. . ..| ....|..++..+.+.|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666532 22 3555566666666666666666666655 1 133 2445555555555666666666666666
Q ss_pred HhcCCCCc
Q 005943 618 LATSPEDP 625 (668)
Q Consensus 618 ~~~~p~~~ 625 (668)
.+..|++.
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 66666543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6e-11 Score=104.55 Aligned_cols=167 Identities=13% Similarity=0.049 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA 532 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 532 (668)
+..+|..+...|.+.|++++|+..|++..+ | +...+..+..+|.+.|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788889999999999999999998764 3 57788889999999999999999999988853 3345677778888
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHH
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a 610 (668)
+...++++.|...+++.... .+.+...+..+..+|.+.|++++|++.|++. ... .+...|..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998743 2335788899999999999999999999987 333 4677899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 005943 611 SIIAEQLLATSPEDP 625 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~ 625 (668)
+..|+++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=105.80 Aligned_cols=190 Identities=15% Similarity=0.068 Sum_probs=99.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE----RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVL 530 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll 530 (668)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 344555555555666666666666554432 34444444555555666666666666665552 333 23455555
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCCC-h-------hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHH
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEPH-L-------EHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD---KTIWASML 598 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~ 598 (668)
.++...|++++|...+++..+. .|+ . ..|..+...+...|++++|.+.++++ ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5556666666666666555532 232 2 33455555555555556665555554 33343 23344444
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
..+... +...++++..+.+.++..+... .....|.+++|...+++..+..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 444332 2233444444444443333222 223344559999999999887763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=119.29 Aligned_cols=179 Identities=10% Similarity=-0.013 Sum_probs=156.6
Q ss_pred hHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHH
Q 005943 473 IDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRA-KEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFT 547 (668)
Q Consensus 473 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 547 (668)
++++...+++... .+...+..+...+...|++ ++|+..|++..+. .|+ ...|..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555554332 3677889999999999999 9999999999985 454 6789999999999999999999999
Q ss_pred hcccccCCCCChhHHHHHHHHhhhc---------CChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhh--------CCHH
Q 005943 548 SMKPEYGLEPHLEHYYCMVDLLGQA---------GCFDDAEQLIAEM-PFK-PDKTIWASMLKACETH--------NNTK 608 (668)
Q Consensus 548 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~--------~~~~ 608 (668)
+.. ...|+...+..+..+|... |++++|.+.++++ ... .+...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 4578888999999999999 9999999999988 333 4678899999999888 9999
Q ss_pred HHHHHHHHHHhcCC---CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 609 LVSIIAEQLLATSP---EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 609 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+|...|+++++.+| .++..+..++.+|...|++++|.+.+++..+..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999988766
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.8e-09 Score=104.92 Aligned_cols=261 Identities=10% Similarity=-0.035 Sum_probs=121.9
Q ss_pred HHHHHHhcCChHHHHHHHccCC----CCChh----hHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-CCcH----HHHHHH
Q 005943 362 LIDLYARLGNVKSALELFHRLP----KKDVV----AWSGLIMGCTKHGLNSLAYLLFRDMINSNQ-DVNQ----FIISSV 428 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~----~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l 428 (668)
....+...|++++|...+++.. ..+.. +++.+...+...|++++|...+++...... .++. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777766655432 11211 344455556666777777776666544211 0111 123344
Q ss_pred HHHhccccchHhHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCChHHHHHHhccCCC--C------CHhHHHH
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKR----GFE--K-EDITLTSLIDMYLKCGEIDDGLALFKFMPE--R------DVVSWTG 493 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~------~~~~~~~ 493 (668)
...+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++... + ....+..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 44555566666666666554432 111 1 122344455555566666666655554321 0 1223445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHhhcCCCHHHHHHHHHhcccccCCCCC---hhHHHH
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPN--EITFL----GVLSACRHAGLVEEAWTIFTSMKPEYGLEPH---LEHYYC 564 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 564 (668)
+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++.... ...+. ...+..
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHH
Confidence 55555556666666666655544211111 11111 1122244556666666666555422 11110 113344
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEMP-------FKPDK-TIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
+..++...|++++|.+.+++.. ..++. ..+..+..++...|+.++|...++++....+.
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 5555555566666555555441 00111 13333444455556666666666655555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.6e-11 Score=114.81 Aligned_cols=259 Identities=11% Similarity=0.032 Sum_probs=156.8
Q ss_pred HHHhcCChHHHHHHHccCCC--C-C----hhhHHHHHHHHHhcCCcHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHh
Q 005943 365 LYARLGNVKSALELFHRLPK--K-D----VVAWSGLIMGCTKHGLNSLAYLLFRDMINS----NQDV-NQFIISSVLKVC 432 (668)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~ 432 (668)
.+...|++++|...|+++.+ + + ...+..+...+...|++++|...+++.... +..| ....+..+...+
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 34444555555555544321 1 1 123444555555555555555555544321 1111 123444455555
Q ss_pred ccccchHhHHHHHHHHHHhCC-CCc----hhHHHHHHHHHHhcCC--------------------hHHHHHHhccCCC--
Q 005943 433 SCLASLRRGKQVHAFCVKRGF-EKE----DITLTSLIDMYLKCGE--------------------IDDGLALFKFMPE-- 485 (668)
Q Consensus 433 ~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~-- 485 (668)
...|++++|...+....+... .++ ..++..+...|...|+ +++|...+++...
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 555666666665555443210 011 2355566666667777 6777666655432
Q ss_pred ---C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhcCCCHHHHHHHHHhccccc
Q 005943 486 ---R----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL-KPN----EITFLGVLSACRHAGLVEEAWTIFTSMKPEY 553 (668)
Q Consensus 486 ---~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 553 (668)
+ ....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++.....
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 133577777888888899999888888765310 011 2267778888889999999999888876421
Q ss_pred CCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 554 GLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP----FKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 554 ~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
.-.++ ..++..+...|...|++++|.+.+++.- ..++ ..++..+...+.+.|++++|...++++.+..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 254 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11112 5677888899999999999999988761 1111 3467778888999999999999999999876
Q ss_pred CC
Q 005943 622 PE 623 (668)
Q Consensus 622 p~ 623 (668)
+.
T Consensus 334 ~~ 335 (338)
T 3ro2_A 334 RE 335 (338)
T ss_dssp --
T ss_pred Hh
Confidence 54
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-09 Score=102.64 Aligned_cols=213 Identities=9% Similarity=0.086 Sum_probs=148.8
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCh-------HHHHHHhccCCC---C-CHhHHHHHHHHHHh
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMYL-------KCGEI-------DDGLALFKFMPE---R-DVVSWTGIIVGCGQ 500 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 500 (668)
++|..+|++..... +.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776653 455666666666654 34775 788888876543 3 45577788888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhh-hcCChHH
Q 005943 501 NGRAKEAIAYFQEMIQSRLKPNE-I-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLG-QAGCFDD 577 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 577 (668)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887 45543 2 6777777778888888888888888732 1223445544433322 3688888
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 578 AEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLAT---SPE-DPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 578 A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
|.++|+++ . .+.+...|..++..+.+.|++++|..+|+++++. .|+ ....|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888776 2 2235667777777788888888888888888885 342 5567778888888888888888888888
Q ss_pred HhcCC
Q 005943 652 KKLGE 656 (668)
Q Consensus 652 ~~~~~ 656 (668)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 77666
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-09 Score=105.94 Aligned_cols=164 Identities=11% Similarity=0.082 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-H
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMPE-----RD----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQS----RLKPN-E 523 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~ 523 (668)
.+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+. +..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 4567777888888888888888876653 11 236778888999999999999999988772 33243 4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccC---CCCChhHHHHHHHHhhhcCC---hHHHHHHHHhCCCCCCH-HHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYG---LEPHLEHYYCMVDLLGQAGC---FDDAEQLIAEMPFKPDK-TIWAS 596 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ 596 (668)
.++..+..++.+.|++++|...+++...... -+.....+..+...|...|+ +++|+.++++....|+. ..+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5788899999999999999999988764311 11123346778888999999 89999999999655543 35677
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
+...+...|++++|...++++.+..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8888999999999999999998743
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-11 Score=115.93 Aligned_cols=239 Identities=12% Similarity=0.094 Sum_probs=148.0
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHccCCC--------C---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHc------C
Q 005943 355 DYIVGSNLIDLYARLGNVKSALELFHRLPK--------K---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINS------N 417 (668)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 417 (668)
+..++..+...+...|++++|...++++.+ . ...++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456778889999999999999999988764 2 2346788889999999999999999998764 2
Q ss_pred CCC-cHHHHHHHHHHhccccchHhHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhH
Q 005943 418 QDV-NQFIISSVLKVCSCLASLRRGKQVHAFCVKRG------FEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVS 490 (668)
Q Consensus 418 ~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 490 (668)
..| ....+..+...+...|++++|...++...+.. ..|. ....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~ 155 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQ 155 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHH
Confidence 222 34566777777888888888888887765431 1111 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhccccc------CCCC
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQS------RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEY------GLEP 557 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p 557 (668)
+..+...+...|++++|+..++++.+. +-.|. ..++..+..++...|++++|...++++.... ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444555555556666666666555542 11232 2356666667777777777777776665310 1111
Q ss_pred C-------hhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 558 H-------LEHYYCMVDLLGQAGCFDDAEQLIAEMP-FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 558 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
. ...+..+...+...+.+.+|...++... ..| +..++..+...+.+.|++++|...+++++++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1122223333444555666666666663 233 4557888888999999999999999999987664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=8.1e-10 Score=97.20 Aligned_cols=168 Identities=8% Similarity=-0.006 Sum_probs=143.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSAC 533 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 533 (668)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778889999999999999999875 357788899999999999999999999998862 44567888899999
Q ss_pred hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHH
Q 005943 534 RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVS 611 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~ 611 (668)
...|++++|...++++... .+.+...+..+..++...|++++|.+.++++ . .+.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998853 3346788899999999999999999999987 2 3346778889999999999999999
Q ss_pred HHHHHHHhcCCCCchh
Q 005943 612 IIAEQLLATSPEDPSK 627 (668)
Q Consensus 612 ~~~~~~~~~~p~~~~~ 627 (668)
..++++.+..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988887643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.7e-10 Score=101.64 Aligned_cols=205 Identities=14% Similarity=0.076 Sum_probs=162.1
Q ss_pred CcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHH
Q 005943 420 VNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIV 496 (668)
Q Consensus 420 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~ 496 (668)
.++..+......+...|++++|...++...+..-+++...+..+..++...|++++|+..|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888889999999999999999999887436777777799999999999999999998764 4 4668889999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC---hhHHHHH
Q 005943 497 GCGQNGRAKEAIAYFQEMIQSRLKPN-E-------ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH---LEHYYCM 565 (668)
Q Consensus 497 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 565 (668)
++...|++++|+..+++..+. .|+ . ..|..+...+...|++++|...|++.. ...|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 999999999999999999985 444 4 457778888999999999999999998 44665 5677788
Q ss_pred HHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
..+|...|+. +++++. ...+...|.... ....+.+++|...++++.++.|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766543 233321 122344444433 345677999999999999999999988888776643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=114.37 Aligned_cols=222 Identities=9% Similarity=-0.039 Sum_probs=148.5
Q ss_pred HhccccchHhHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCChHHHHHHhccCCC-----C-----CHhHHHHHH
Q 005943 431 VCSCLASLRRGKQVHAFCVKRGF-EK----EDITLTSLIDMYLKCGEIDDGLALFKFMPE-----R-----DVVSWTGII 495 (668)
Q Consensus 431 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~l~ 495 (668)
.+...|++++|...++...+... .+ ...++..+...|...|+++.|...+.+..+ + ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34556677777777666654311 11 234566777778888888777776665432 1 134677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccC--CCC-ChhHHHHHHH
Q 005943 496 VGCGQNGRAKEAIAYFQEMIQS----RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYG--LEP-HLEHYYCMVD 567 (668)
Q Consensus 496 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p-~~~~~~~l~~ 567 (668)
..|...|++++|++.+++..+. +-.+. ..++..+..++...|++++|...+++...-.. ..| ...++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 8888888888888888877653 11111 23677788888888999999888888764100 123 2667788888
Q ss_pred HhhhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 568 LLGQAGCFDDAEQLIAEM----PF--KPD-KTIWASMLKACETHNN---TKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
+|.+.|++++|.+.+++. .. .|. ...+..+...+...++ ..+|...+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 899999999998888876 11 122 3344555555666777 67777776662 2334445577789999999
Q ss_pred cCChhhHHHHHHHHHh
Q 005943 638 LGMWDSLSKVRKAGKK 653 (668)
Q Consensus 638 ~g~~~~a~~~~~~~~~ 653 (668)
.|++++|..++++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999888765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=5e-09 Score=97.30 Aligned_cols=242 Identities=11% Similarity=0.005 Sum_probs=106.7
Q ss_pred HHHHHhcCChHHHHHHHccCCCCChh-hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhH
Q 005943 363 IDLYARLGNVKSALELFHRLPKKDVV-AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRG 441 (668)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 441 (668)
++-..-.|.+..++.-...+...+.. .-.-+.++|...|++... ..-.|....+..+...+. .+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc----H
Confidence 33444567777777755555433222 222234666666665521 112233223333222221 11 3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005943 442 KQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER-----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQ 516 (668)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 516 (668)
...++++...+ +++...+..+..++...|++++|++++.+...+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444333 233333344455555555555555555544221 233444455555555555555555555554
Q ss_pred CCCCC-----CHHHHHHHHHH--hhc--CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 005943 517 SRLKP-----NEITFLGVLSA--CRH--AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMP- 586 (668)
Q Consensus 517 ~g~~p-----~~~~~~~ll~~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 586 (668)
..| +..+...+..+ ... .+++.+|..+|+++..+ .|+..+...+..++.+.|++++|.+.++.+.
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 244 13333333333 111 22555555555555422 3332222223335555555555555554331
Q ss_pred C-----------CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 587 F-----------KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 587 ~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
. +.|..++..++......|+ .|.++++++.+..|+++.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 0 1133333233333333343 455555555555555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-08 Score=99.72 Aligned_cols=224 Identities=10% Similarity=0.017 Sum_probs=147.6
Q ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHhccccchHhHHHHHHHHHHhCC-----C-CchhHHHHHHH
Q 005943 397 CTKHGLNSLAYLLFRDMINSNQ-DVN----QFIISSVLKVCSCLASLRRGKQVHAFCVKRGF-----E-KEDITLTSLID 465 (668)
Q Consensus 397 ~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l~~ 465 (668)
+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+....+... . ....+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4445555555555555443210 011 22344444455555555555555554443210 1 12345667777
Q ss_pred HHHhcCChHHHHHHhccCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 005943 466 MYLKCGEIDDGLALFKFMPE-----RD----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQS----RLKPNEITFLGVLSA 532 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~ 532 (668)
.|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|+..+++..+. +-+....++..+..+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 88888888888877776543 12 346777888889999999999999888761 222235578888889
Q ss_pred hhcCCCHHHHHHHHHhcccccCCC--C-ChhHHHHHHHHhhhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhC
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLE--P-HLEHYYCMVDLLGQAGC---FDDAEQLIAEMPFKPDK-TIWASMLKACETHN 605 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~ 605 (668)
+.+.|++++|...+++......-. | ....+..+...|...|+ +.+|+.++++....|+. ..+..+...+...|
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCC
Confidence 999999999999999877532221 2 23456677777788888 88999999987644443 35567777899999
Q ss_pred CHHHHHHHHHHHHhc
Q 005943 606 NTKLVSIIAEQLLAT 620 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~ 620 (668)
++++|...++++.+.
T Consensus 351 ~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 351 HFEQAAAFYRKVLKA 365 (378)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=103.03 Aligned_cols=222 Identities=16% Similarity=0.193 Sum_probs=153.0
Q ss_pred ccccchHhHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC----------C-CHhHHHHH
Q 005943 433 SCLASLRRGKQVHAFCVKR-------GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE----------R-DVVSWTGI 494 (668)
Q Consensus 433 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l 494 (668)
...|++++|...+++..+. ..+....++..+...|...|++++|...+++..+ | ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766542 2233466788889999999999999998887652 1 24578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhccccc-----CCCC-ChhH
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQS------RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEY-----GLEP-HLEH 561 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 561 (668)
...|...|++++|+..+++..+. .-.|+ ..++..+...+...|++++|...++++.... +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 11233 4478888889999999999999999887431 1123 3567
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhhCC------HHHHHHHHHHHHhcCCCC
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEMP----------FKPD-KTIWASMLKACETHNN------TKLVSIIAEQLLATSPED 624 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~ 624 (668)
+..+..+|...|++++|.++++++. ..+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999988761 1222 2233333333333222 333333333333344556
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
..++..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999987654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-08 Score=100.30 Aligned_cols=261 Identities=13% Similarity=0.035 Sum_probs=136.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCcHH----HHHHHHHHhccccchHhHHHHHHHHHHhCCC-Cc----hhHHHHH
Q 005943 393 LIMGCTKHGLNSLAYLLFRDMINSNQDVNQF----IISSVLKVCSCLASLRRGKQVHAFCVKRGFE-KE----DITLTSL 463 (668)
Q Consensus 393 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 463 (668)
....+...|++++|...+++........+.. .+..+...+...|+++.|...+++.....-. .+ ...+..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556666777777666665543222222 3344445555666677666666655442110 11 1224445
Q ss_pred HHHHHhcCChHHHHHHhccCCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHHHHH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPE-------R----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK--P--NEITFLG 528 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~ 528 (668)
...+...|++++|...+++... + ....+..+...+...|++++|...+++..+..-. + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 5666666777666666654431 1 1223445556666667777777776666553111 1 1234555
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHH-----HHHHHhhhcCChHHHHHHHHhCC-CCCC-----HHHHHHH
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYY-----CMVDLLGQAGCFDDAEQLIAEMP-FKPD-----KTIWASM 597 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l 597 (668)
+...+...|++++|...+++.............+. ..+..+...|++++|...+++.. ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 66666666777777666666543211111111111 22334556677777777666652 1111 2234455
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCC-----C-chhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPE-----D-PSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
...+...|++++|...++++.+..+. + ..++..++.++...|++++|...+++..+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55566667777777666666553221 1 12455566666667777777666666543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.03 E-value=7.2e-09 Score=94.36 Aligned_cols=180 Identities=13% Similarity=0.060 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHH
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMPE--RD----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI----TFLG 528 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ 528 (668)
.+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 344445556666777777766666552 32 234555666666667777777777666663 23221 2333
Q ss_pred HHHHhhc------------------CCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCCCCC
Q 005943 529 VLSACRH------------------AGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEMPFKP 589 (668)
Q Consensus 529 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 589 (668)
+..++.. .|++++|...|+++.+ ..|+ ...+........- .. ..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~~~----~~------~~---- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLVFL----KD------RL---- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHHHH----HH------HH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHHHH----HH------HH----
Confidence 3333332 3444555555555442 1232 1111111100000 00 00
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP---SKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKK 658 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 658 (668)
......+...+.+.|+++.|+..|+++++..|+++ .++..++.+|.+.|++++|++.++.+...+++.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00112455668899999999999999999999986 568999999999999999999999999887743
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.7e-09 Score=96.06 Aligned_cols=182 Identities=10% Similarity=0.004 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE--RD----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL-KPN-EITFLG 528 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ 528 (668)
...+-.+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+..- .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444445555556666666666655543 21 33455555555566666666666666555310 111 223444
Q ss_pred HHHHhhc--------CCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005943 529 VLSACRH--------AGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLK 599 (668)
Q Consensus 529 ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 599 (668)
+..++.. .|++++|...|+++... .|+ ......+.......++. ...+..+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4445554 55556666555555532 232 12221110000000000 001244556
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhc----------CChhhHHHHHHHHHhcCC
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPED---PSKYVMLSNVYATL----------GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~ 656 (668)
.+.+.|++++|+..|+++++..|++ +..+..++.+|... |++++|...++++.+..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 6777788888888888887777774 34677777777765 777778888877776655
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=7e-09 Score=85.54 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=81.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACET 603 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 603 (668)
+..+...+...|++++|..+++++... .+.+...+..++..+...|++++|..+++++ . .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444455555555555555555422 1123445555555566666666666666555 1 22345566667777777
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 604 HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
.|++++|...++++.+..|.++..+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7888888888888888778777788888888888888888888887776554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.2e-10 Score=93.09 Aligned_cols=140 Identities=13% Similarity=0.021 Sum_probs=99.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcC
Q 005943 496 VGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAG 573 (668)
Q Consensus 496 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 573 (668)
..+...|++++|+..++..... .|+. ..+..+...|.+.|++++|.+.|++..+ +.| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 3445566777777777776552 3432 3455677777888888888888887773 345 4677778888888888
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHH-HHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 574 CFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSI-IAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 574 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
++++|...|++. ...| +...|..+...+.+.|++++|.+ +++++++++|.++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888776 3344 56677778888888888766554 4588888888888888888888877775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-08 Score=91.15 Aligned_cols=244 Identities=12% Similarity=0.024 Sum_probs=168.7
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEI 473 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (668)
++...-.|++..++.-..++ ...........+.+++...|++.... .-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH-hccc--
Confidence 34445678888777633222 21222233344456666666655321 122333344444433 3332
Q ss_pred HHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 474 DDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 474 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
|+..|++... ++...+..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666665552 455666788889999999999999999987754322 4557888899999999999999999999
Q ss_pred ccccCCCC-----ChhHHHHHHHH--hhhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 550 KPEYGLEP-----HLEHYYCMVDL--LGQAG--CFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 550 ~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
.+ ..| +..+...|+.+ ....| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 74 366 35556666655 33334 899999999999 3446644445555588899999999999998877
Q ss_pred c----------CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 620 T----------SPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 620 ~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
. +|+++.++..++.+....|+ +|.++++++.+..+..|
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 5 48899999888888888897 89999999998776443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-09 Score=114.07 Aligned_cols=162 Identities=14% Similarity=0.190 Sum_probs=135.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLS 531 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 531 (668)
+...++.+...|.+.|++++|++.|++..+ | +...|..+..+|.+.|++++|+..|++.++. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456788888888899999999998887763 4 5678888999999999999999999998884 555 568888999
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTK 608 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 608 (668)
++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.|++. ...| +...+..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998884 356 4788899999999999999999999887 4445 5678888999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 005943 609 LVSIIAEQLLATSP 622 (668)
Q Consensus 609 ~a~~~~~~~~~~~p 622 (668)
+|.+.++++.++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-08 Score=95.07 Aligned_cols=172 Identities=11% Similarity=-0.018 Sum_probs=138.4
Q ss_pred HHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccC
Q 005943 476 GLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYG 554 (668)
Q Consensus 476 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 554 (668)
....+......+...+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 333343333334556777888889999999999999999985 45 4568888999999999999999999999843
Q ss_pred CCCChhHHHHH-HHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHH
Q 005943 555 LEPHLEHYYCM-VDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED--PSKYV 629 (668)
Q Consensus 555 ~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~ 629 (668)
.|+....... ...+...++.++|.+.+++. . .+.+...+..+...+...|++++|...++++++.+|++ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 5664433333 33466778888899888877 3 33467888999999999999999999999999999998 88999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHH
Q 005943 630 MLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 630 ~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
.++.++...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999988764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=103.50 Aligned_cols=200 Identities=8% Similarity=-0.006 Sum_probs=131.7
Q ss_pred chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-------C--CHhHHHHHHHHHHhcCChHHH
Q 005943 437 SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE-------R--DVVSWTGIIVGCGQNGRAKEA 507 (668)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a 507 (668)
++++|...+... ...|...|++++|...|.+... + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 466666666554 3456677888888777765542 1 145778888888888999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHhhcC-CCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChHH
Q 005943 508 IAYFQEMIQSRL---KPN--EITFLGVLSACRHA-GLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 508 ~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 577 (668)
+..+++..+... .+. ..++..+..+|... |++++|+..|++...-..-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888776310 111 24677888888885 9999999988887742110111 3567788889999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--hcCCh
Q 005943 578 AEQLIAEM-PFKPD---K-----TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSK-----YVMLSNVYA--TLGMW 641 (668)
Q Consensus 578 A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 641 (668)
|++.+++. ...|+ . ..|..+..++...|+++.|...++++++++|..... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99998876 22222 1 146667777888899999999999999888875543 344555554 34556
Q ss_pred hhHHHHHHHH
Q 005943 642 DSLSKVRKAG 651 (668)
Q Consensus 642 ~~a~~~~~~~ 651 (668)
++|+..++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 6666666443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.2e-09 Score=96.59 Aligned_cols=205 Identities=12% Similarity=0.059 Sum_probs=146.2
Q ss_pred CCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCChHHHHHHhccCCC--CC----Hh
Q 005943 419 DVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKE---DITLTSLIDMYLKCGEIDDGLALFKFMPE--RD----VV 489 (668)
Q Consensus 419 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~ 489 (668)
+.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+ |+ ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677777788889999999999999998764 223 56778889999999999999999998764 32 34
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChh
Q 005943 490 SWTGIIVGCGQ--------NGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLE 560 (668)
Q Consensus 490 ~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 560 (668)
.+..+..++.. .|++++|+..|+++.+. .|+. .....+ ..+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67778888888 99999999999999985 4543 222111 111111100 012
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhh----------CCHHHHHHHHHHHHhcCCCCc
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETH----------NNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~ 625 (668)
.+..+..+|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 2556777888888888888888876 22232 34566666667655 899999999999999999986
Q ss_pred h---hHHHHHHHHHhcCChhhHH
Q 005943 626 S---KYVMLSNVYATLGMWDSLS 645 (668)
Q Consensus 626 ~---~~~~l~~~~~~~g~~~~a~ 645 (668)
. +...+..++.+.|+++++.
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 4 4555666666666665544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=89.89 Aligned_cols=127 Identities=14% Similarity=0.050 Sum_probs=106.7
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhC
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHN 605 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 605 (668)
|...+...|++++|+..++... ...|+ ...+..+..+|.+.|++++|.+.|++. ...| +...|..+...+.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677889999999999887 33553 566778999999999999999999988 3444 6788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHH-HHHHHhcCCCC
Q 005943 606 NTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKV-RKAGKKLGEKK 658 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~ 658 (668)
++++|+..|+++++++|.++.++..++.+|.+.|++++|.+. +++..+..+..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999999999999987765 58888776643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-08 Score=97.58 Aligned_cols=201 Identities=9% Similarity=-0.027 Sum_probs=127.1
Q ss_pred hccccchHhHHHHHHHHHHh----CCCCc-hhHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----HhHHHHHHHH
Q 005943 432 CSCLASLRRGKQVHAFCVKR----GFEKE-DITLTSLIDMYLKCGEIDDGLALFKFMPE-----RD----VVSWTGIIVG 497 (668)
Q Consensus 432 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~ 497 (668)
+...|++++|...+.+..+. |.++. ..+|+.+..+|.+.|++++|+..|++..+ .+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445555555555444332 21111 34566667777777777777766665542 11 3467778888
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCC-CCh-----hHHH
Q 005943 498 CGQN-GRAKEAIAYFQEMIQSRLKPN-------EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLE-PHL-----EHYY 563 (668)
Q Consensus 498 ~~~~-~~~~~a~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~-----~~~~ 563 (668)
|... |++++|+..|++..+. .|+ ..++..+...+...|++++|...|++.... ... +.. ..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHH
Confidence 8885 8999999888888763 221 246778888888999999999999888743 211 111 1567
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEM-PFKPDKT------IWASMLKACE--THNNTKLVSIIAEQLLATSPEDPSKYVMLSNV 634 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 634 (668)
.+..++...|++++|...+++. ...|+.. .+..++.++. ..+++++|+..|+++..++|.....+..+-..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~ 283 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKES 283 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 7788888899999999999887 3444322 2344555553 34678888888888877777765555544443
Q ss_pred H
Q 005943 635 Y 635 (668)
Q Consensus 635 ~ 635 (668)
+
T Consensus 284 ~ 284 (292)
T 1qqe_A 284 I 284 (292)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-08 Score=88.07 Aligned_cols=158 Identities=9% Similarity=0.023 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHH-
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDL- 568 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~- 568 (668)
+..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...+++.... .|+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 444556677778888888888877663 34 4456777778888888888888888888743 3443333322222
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCChhhH
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED--PSKYVMLSNVYATLGMWDSL 644 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a 644 (668)
+...+...+|...+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222334567777766 3344 57788889999999999999999999999999875 56899999999999999999
Q ss_pred HHHHHHHHh
Q 005943 645 SKVRKAGKK 653 (668)
Q Consensus 645 ~~~~~~~~~ 653 (668)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.5e-08 Score=81.24 Aligned_cols=132 Identities=15% Similarity=0.200 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHh
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLL 569 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 569 (668)
.|..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677788888889999999998888753 335667777888888889999999999888743 233567788888899
Q ss_pred hhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 570 GQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
...|++++|.+.++++ . .+.+...+..+...+.+.|++++|...++++.+..|.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999998877 2 23467778888888999999999999999999888763
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.5e-09 Score=110.44 Aligned_cols=168 Identities=10% Similarity=-0.059 Sum_probs=86.5
Q ss_pred HhcCChHHHHHHhccCC--------C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 005943 468 LKCGEIDDGLALFKFMP--------E---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHA 536 (668)
Q Consensus 468 ~~~~~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 536 (668)
...|++++|++.+++.. + .+...+..+..++...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 34455555555555443 1 233445555555555555666665555555531 12334555555555555
Q ss_pred CCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSII 613 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 613 (668)
|++++|...|++..+ ..| +...+..+..+|.+.|++++ .+.|+++ ...| +...|..+..++.+.|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666655555552 233 34555555555555565555 5555554 2222 344555555555556666666666
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 614 AEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 614 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
|+++.+++|.+..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666655566555555555555544433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-08 Score=93.87 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE----------R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS------RL 519 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~ 519 (668)
..++..+...|...|++++|...|.+..+ | ....+..+...|...|++++|+..+++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455556666666666666666655431 1 2345666777777788888888888777664 11
Q ss_pred CCC-HHHHHHHHHHhhcCCCHHHHHHHHHhccccc------CCCC-ChhHHHHHHHHhhhcCC------hHHHHHHHHhC
Q 005943 520 KPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEY------GLEP-HLEHYYCMVDLLGQAGC------FDDAEQLIAEM 585 (668)
Q Consensus 520 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~ 585 (668)
.|+ ..++..+..++...|++++|...+++..... ...+ ....+..+...+...+. +.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 332 3467777888888888888888888776420 1122 23344444444433332 33444444444
Q ss_pred C-CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 005943 586 P-FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLAT 620 (668)
Q Consensus 586 ~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 620 (668)
. ..| ...++..+...+...|++++|...++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 223 3446777888899999999999999998764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-08 Score=84.23 Aligned_cols=103 Identities=7% Similarity=0.013 Sum_probs=90.0
Q ss_pred CCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 554 GLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 554 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
.+.|+ ...+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..|+++.+++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45664 667888888999999999999999988 3334 67788889999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 631 LSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 631 l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++.+|...|++++|+..+++..+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999887665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-08 Score=104.63 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=117.1
Q ss_pred cCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHH
Q 005943 470 CGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTI 545 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 545 (668)
.|++++|.+.|++..+ | +...|..+...+...|++++|+..+++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4778889999888774 3 4677888888999999999999999998885 44 466788888899999999999999
Q ss_pred HHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh---CCHHHHHHHHHHHHh
Q 005943 546 FTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETH---NNTKLVSIIAEQLLA 619 (668)
Q Consensus 546 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 619 (668)
+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9988843 45 4778888999999999999999999887 3333 567788888888888 999999999999999
Q ss_pred cCCCCchhHHHHH
Q 005943 620 TSPEDPSKYVMLS 632 (668)
Q Consensus 620 ~~p~~~~~~~~l~ 632 (668)
.+|.+...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888877766
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.3e-07 Score=80.39 Aligned_cols=161 Identities=7% Similarity=-0.135 Sum_probs=119.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC----CHHHHHHHHHhcccccCCCCChhHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG----LVEEAWTIFTSMKPEYGLEPHLEHY 562 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 562 (668)
++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++.... -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 45556666666667778888888888877764 45566666666766 5 788888888887532 245667
Q ss_pred HHHHHHhhh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 563 YCMVDLLGQ----AGCFDDAEQLIAEMP-FKPD---KTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 563 ~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
..|...|.. .+++++|.++|++.- ..|+ ...+..+...|.. .+++++|...|+++.+. |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 777777776 778888888888773 3342 6777778887777 77899999999998887 666778888
Q ss_pred HHHHHHhc-C-----ChhhHHHHHHHHHhcCC
Q 005943 631 LSNVYATL-G-----MWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 631 l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 656 (668)
|+.+|... | ++++|..++++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888754 3 89999999998887765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=84.67 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=64.4
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
...+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445555666666667777776666665 22 2355566666666667777777777777777777777777777777777
Q ss_pred hcCChhhHHHHHHHHHhcCC
Q 005943 637 TLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 637 ~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|++++|...+++..+..+
T Consensus 101 ~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHCc
Confidence 77777777777766665544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-07 Score=84.73 Aligned_cols=126 Identities=10% Similarity=0.036 Sum_probs=83.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACET 603 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 603 (668)
+..+...+...|++++|...+++.. .|+...+..+..+|.+.|++++|.+.+++. . .+.+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344555566677777777666653 345666666777777777777777776665 2 22345566667777777
Q ss_pred hCCHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 604 HNNTKLVSIIAEQLLATSPEDP----------------SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.|++++|...++++.+..|.+. .++..++.+|...|++++|.+.+++..+..+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 7777777777777777666655 6777777777777777777777777766544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.1e-08 Score=79.03 Aligned_cols=106 Identities=10% Similarity=-0.052 Sum_probs=55.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKAC 601 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 601 (668)
.+......+.+.|++++|++.|++..+ ..| +...|..+..+|.+.|++++|++.+++. .. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 444555555555555555555555542 123 3445555555555555555555555544 21 22344555555555
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
...|++++|++.|+++++++|+++.++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 55555555555555555555555555544443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.3e-08 Score=86.33 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHh
Q 005943 492 TGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLL 569 (668)
Q Consensus 492 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 569 (668)
..+..+|.+.|++++|+..|++..+. .| +...+..+..++...|++++|...|++..+ ..| +...+..+..+|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHH
Confidence 34888899999999999999999985 45 466888899999999999999999999984 356 477888888888
Q ss_pred hhcCC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 570 GQAGC--FDDAEQLIAEMPFKPDKT--IWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 570 ~~~g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
...|. .+.+...++... .|+.. .+.....++...|++++|+..|++++++.|++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 76654 445566666663 33333 34445556777899999999999999999974
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=8.3e-07 Score=84.40 Aligned_cols=163 Identities=9% Similarity=-0.021 Sum_probs=123.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhH
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNEI----TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEH 561 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 561 (668)
+...+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...+++......-.++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344677888999999999999988742 223321 2334666777888999999999998752111223 236
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------ch
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEMP-----F---KPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPED------PS 626 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 626 (668)
++.+..+|...|++++|.+.++++- . .+. ..++..+...|.+.|++++|...++++++..+.. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8899999999999999999888762 1 111 2367888889999999999999999999854332 66
Q ss_pred hHHHHHHHHHhcCC-hhhHHHHHHHHHh
Q 005943 627 KYVMLSNVYATLGM-WDSLSKVRKAGKK 653 (668)
Q Consensus 627 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 653 (668)
+|..++.+|...|+ +++|.+.+++..+
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999999995 6999999988764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-07 Score=90.08 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=150.1
Q ss_pred cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc-ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 005943 400 HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSC-LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLA 478 (668)
Q Consensus 400 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 478 (668)
.|++++|.+++++..+.... + +.. .++++.|...+... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 46677888888776543211 0 112 35666666665543 456777788888887
Q ss_pred HhccCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhcCCCHHHHHH
Q 005943 479 LFKFMPE-----RD----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR---LKPN--EITFLGVLSACRHAGLVEEAWT 544 (668)
Q Consensus 479 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~~ 544 (668)
.|.+..+ .+ ...|+.+...|...|++++|+..|++..+.- -.|. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776542 11 3478888889999999999999998876531 1222 2467788888888 99999999
Q ss_pred HHHhcccccCCC---C-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhhCCHHHHHH
Q 005943 545 IFTSMKPEYGLE---P-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP-F---KPD----KTIWASMLKACETHNNTKLVSI 612 (668)
Q Consensus 545 ~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~a~~ 612 (668)
.|++...-..-. + ...++..+..+|.+.|++++|++.+++.- . .++ ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998877421101 1 14678888999999999999999998771 1 122 2255566666777899999999
Q ss_pred HHHHHHhcCCCCchh-----HHHHHHHHHhcCChhhHHHH
Q 005943 613 IAEQLLATSPEDPSK-----YVMLSNVYATLGMWDSLSKV 647 (668)
Q Consensus 613 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 647 (668)
.+++++ ..|..... +..++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 88875433 34455555 56777766663
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-08 Score=105.73 Aligned_cols=152 Identities=11% Similarity=-0.026 Sum_probs=133.3
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHH
Q 005943 499 GQNGRAKEAIAYFQEMI--------QSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDL 568 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~--------~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 568 (668)
...|++++|++.+++.. + ..| +...+..+..++...|++++|...++++.+. .| +...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHH
Confidence 78899999999999998 4 344 4567888888999999999999999999853 55 57889999999
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHH
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 646 (668)
|...|++++|.+.|+++ ...| +...|..+..++.+.|++++ ++.|+++++.+|++..++..++.+|.+.|++++|+.
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988 3344 56788889999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 005943 647 VRKAGKKLGE 656 (668)
Q Consensus 647 ~~~~~~~~~~ 656 (668)
.+++..+.++
T Consensus 556 ~~~~al~l~P 565 (681)
T 2pzi_A 556 TLDEVPPTSR 565 (681)
T ss_dssp HHHTSCTTST
T ss_pred HHHhhcccCc
Confidence 9988766544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=76.71 Aligned_cols=103 Identities=6% Similarity=0.037 Sum_probs=91.3
Q ss_pred CCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 554 GLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 554 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
.+.|+ ...+......|.+.|++++|++.|++. ... .+...|..+..++.+.|++++|+..++++++++|.++.+|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 34564 567788899999999999999999987 333 467888899999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 631 LSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 631 l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++.+|...|++++|++.+++..+..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999988776
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-07 Score=98.38 Aligned_cols=150 Identities=16% Similarity=0.100 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHH
Q 005943 502 GRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAE 579 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 579 (668)
|++++|+..+++..+. .| +...+..+...+...|++++|.+.+++.. ...| +...+..+..+|...|++++|.
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455555555555442 22 23445555555555555555555555554 2233 2445555555555555555555
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc---CChhhHHHHHHHHHhc
Q 005943 580 QLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL---GMWDSLSKVRKAGKKL 654 (668)
Q Consensus 580 ~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 654 (668)
+.+++. ... .+...+..+...+.+.|++++|.+.++++.+..|+++..+..++.++... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 555544 112 23445555555555555555555555555555555555555555555555 5555555555555544
Q ss_pred CC
Q 005943 655 GE 656 (668)
Q Consensus 655 ~~ 656 (668)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.3e-07 Score=86.36 Aligned_cols=164 Identities=9% Similarity=-0.042 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHhhcCCCHHHHHHHHHhcccccC--CCCC--hh
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-E----ITFLGVLSACRHAGLVEEAWTIFTSMKPEYG--LEPH--LE 560 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 560 (668)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444567778888999999999988877532211 1 1244455667888999999999888763211 1121 44
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------Cc
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEMP----FKPD-----KTIWASMLKACETHNNTKLVSIIAEQLLATSPE------DP 625 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 625 (668)
+++.+...|...|++++|.+.++++- ..|+ ..++..+...|...|++++|...++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999988761 1222 257888888999999999999999999885422 15
Q ss_pred hhHHHHHHHHHhcCChhhH-HHHHHHHHh
Q 005943 626 SKYVMLSNVYATLGMWDSL-SKVRKAGKK 653 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 653 (668)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777777653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-07 Score=84.18 Aligned_cols=158 Identities=8% Similarity=0.042 Sum_probs=118.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHhhcCCCHHHHHHHHHhcccccCC
Q 005943 493 GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLG----------------VLSACRHAGLVEEAWTIFTSMKPEYGL 555 (668)
Q Consensus 493 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~~~ 555 (668)
.....+...|++++|+..|++..+. .|+. ..+.. +..++.+.|++++|...|++..+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 83 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--- 83 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 3445566778888888888887773 4543 34555 888999999999999999999843
Q ss_pred CC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCC--HHHHHHHHHHHHhcCCCCchhHHH
Q 005943 556 EP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNN--TKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 556 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
.| +...+..+..+|...|++++|.+.|++. ...| +...|..+...+...|+ .+.+...++.+....|. ...+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence 56 5788999999999999999999999988 3344 67788888888765543 44556666666543332 235666
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 631 LSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 631 l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+.++...|++++|+..+++..+..+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 78888899999999999999987665
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=79.19 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=68.8
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
...+..+...+.+.|++++|...|++. ... .+...|..+..++.+.|++++|...++++++.+|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445556666777777777777777766 222 355666667777777777777777777777777777777777777777
Q ss_pred hcCChhhHHHHHHHHHhcCC
Q 005943 637 TLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 637 ~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|++++|.+.+++..+..+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 77777777777777766544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-07 Score=87.67 Aligned_cols=134 Identities=11% Similarity=-0.021 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 005943 520 KPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASM 597 (668)
Q Consensus 520 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 597 (668)
+.+...+..+...+...|++++|...|++.... .| +...+..+..+|.+.|++++|...++++ ...|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 334456777888899999999999999999853 56 5788999999999999999999999998 345766544433
Q ss_pred HH-HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 598 LK-ACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 598 ~~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.. .+...++.+.|...++++.+.+|+++..+..++.+|...|++++|...++++.+..+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 33 366788899999999999999999999999999999999999999999999998776
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-06 Score=81.46 Aligned_cols=148 Identities=10% Similarity=0.083 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH--HHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCC----
Q 005943 502 GRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVE--EAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGC---- 574 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---- 574 (668)
+++++++.+++++.+.. +-|...|..-...+.+.|.++ ++++.++++... .| |...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 34555555555555431 223344444444444444444 555555555422 22 34444444444444443
Q ss_pred --hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCChhhHHH
Q 005943 575 --FDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNT-KLVSIIAEQLLATS---PEDPSKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 575 --~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~ 646 (668)
++++++.++++ . .+-|...|+.+...+.+.|+. +.+..+.+++.+++ |.++.++..++.+|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 45555555444 1 122444555555444444442 22334444444433 4555555555555555555556665
Q ss_pred HHHHHHh
Q 005943 647 VRKAGKK 653 (668)
Q Consensus 647 ~~~~~~~ 653 (668)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.5e-07 Score=78.39 Aligned_cols=127 Identities=8% Similarity=-0.060 Sum_probs=95.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACE 602 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 602 (668)
.+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. . .+.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666667777777777777777642 1224667777777888888888888887766 2 2335677888888889
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCChhhHHHHHHHHHh
Q 005943 603 THNNTKLVSIIAEQLLATSPEDPSKYVMLSNV--YATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 653 (668)
..|++++|...++++.+..|.+...+..+..+ +...|++++|.+.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988887554444 7888999999999887754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-07 Score=83.79 Aligned_cols=185 Identities=13% Similarity=0.024 Sum_probs=130.3
Q ss_pred cHHHHHHHHHHhccccchHhHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCChHHHHHHhccCCC--CCH----hHHH
Q 005943 421 NQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFE-K-EDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDV----VSWT 492 (668)
Q Consensus 421 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~ 492 (668)
+...+......+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556667788999999999999999886421 1 235677788999999999999999998764 432 1444
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhccccc
Q 005943 493 GIIVGCGQ------------------NGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEY 553 (668)
Q Consensus 493 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 553 (668)
.+..++.. .|++++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555543 57899999999999985 56543 2222111 001111111
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 554 GLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 554 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|++++|.+.++.+....|.+..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678889999999999999987 33343 246777888899999999999999999988887643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-06 Score=77.75 Aligned_cols=174 Identities=7% Similarity=-0.077 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-CCHhHHHHHHHHHHhcC----ChHHHHHHHHHH
Q 005943 440 RGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE-RDVVSWTGIIVGCGQNG----RAKEAIAYFQEM 514 (668)
Q Consensus 440 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m 514 (668)
+|...|....+.| ++..+..+...|...+++++|...|++..+ .++..+..|...|.. + ++++|+..|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3445555555544 556667777777788888888888887664 356677777777777 6 899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhc----CCCHHHHHHHHHhcccccCCCCC---hhHHHHHHHHhhh----cCChHHHHHHHH
Q 005943 515 IQSRLKPNEITFLGVLSACRH----AGLVEEAWTIFTSMKPEYGLEPH---LEHYYCMVDLLGQ----AGCFDDAEQLIA 583 (668)
Q Consensus 515 ~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 583 (668)
.+.| +...+..+...|.. .+++++|..+|++.... .|+ ...+..|..+|.. .+++++|.+.|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8765 56677777777877 88999999999998843 443 6788888888888 789999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHHhh-C-----CHHHHHHHHHHHHhcCCC
Q 005943 584 EM-PFKPDKTIWASMLKACETH-N-----NTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 584 ~~-~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p~ 623 (668)
+. ...++...+..+...|... | +.++|...++++.+....
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88 3334566777777777643 3 899999999998886543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.62 E-value=2.8e-06 Score=86.67 Aligned_cols=95 Identities=8% Similarity=-0.042 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCC-hhHHHHHHHHHHhC-CCCC-CHHHHHH
Q 005943 248 FTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQ-NEEAITLLSHIHSS-GMCI-DSYTFTS 324 (668)
Q Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~-g~~p-~~~t~~~ 324 (668)
.+|...+..+-. |+.+.+..+|++... ..|+...|...+.-..+.+. .+....+|+..... |..| +...|..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLK----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHST----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 445555555544 778888888888755 45677777777766665553 35566677766553 4333 5555655
Q ss_pred HHHHHHh----ccccchHHHHHHHHHHHH
Q 005943 325 ALKACIN----LLNFNSRFALQVHGLIVT 349 (668)
Q Consensus 325 ll~~~~~----~~~~~~~~a~~~~~~~~~ 349 (668)
.+..+.. .++. +.+..+++....
T Consensus 91 Yi~f~~~~~~~~~~~--~~vR~iy~rAL~ 117 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRI--EKIRNGYMRALQ 117 (493)
T ss_dssp HHHHTSSCSSHHHHH--HHHHHHHHHHHT
T ss_pred HHHHHHhchhhhHHH--HHHHHHHHHHHh
Confidence 5555432 3445 667777777776
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-07 Score=79.77 Aligned_cols=156 Identities=8% Similarity=0.005 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hh
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA-CR 534 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 534 (668)
.+......+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++..+. .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344556677788888888888888875 35667888888888888888888888887664 3444333222211 12
Q ss_pred cCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhhCCHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD---KTIWASMLKACETHNNTKL 609 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~ 609 (668)
..+....|...+++..+ ..| +...+..+..++...|++++|...++++ ...|+ ...+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22233346777777773 355 4778888888899999999999988877 44443 4578888888888899999
Q ss_pred HHHHHHHHHh
Q 005943 610 VSIIAEQLLA 619 (668)
Q Consensus 610 a~~~~~~~~~ 619 (668)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.7e-07 Score=73.80 Aligned_cols=117 Identities=10% Similarity=-0.044 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKAC 601 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 601 (668)
..+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. .. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45666666777777777777777777642 1234667777778888888888888887766 22 33567788888889
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChh
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWD 642 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 642 (668)
...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.9e-07 Score=72.95 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 005943 523 EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKA 600 (668)
Q Consensus 523 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 600 (668)
...+..+...+...|++++|...++++... .+.+...+..+...+.+.|++++|..+++++ . .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666666777777777777777777642 1234566777777777888888888877766 2 23456677888888
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 601 CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999999998888888888877654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.59 E-value=8e-05 Score=75.89 Aligned_cols=371 Identities=12% Similarity=0.021 Sum_probs=195.9
Q ss_pred CC-ChHHHHHHhhccC----CCCcchHHHHhhhccc--CchhhHHHHHHHHHcCCC-HHHHHHHHHHhhhhhhcCC-CCe
Q 005943 214 CG-EIDDGLALFNFMP----ERDVVSWTGIIVGCFE--CSCFTLSALVDMYSNCNV-LCEARKLFDQYSSWAASAY-GNV 284 (668)
Q Consensus 214 ~g-~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~-~~~ 284 (668)
.| +++.|..+|+.+. ..+......+..-+.. |+...|...+....+.++ .+....+|+..... .|.. ++.
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~-vg~d~~s~ 85 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ-FENYWDSY 85 (493)
T ss_dssp -----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHH-STTCTTCH
T ss_pred cCcchHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-cCCCcccH
Confidence 45 3666666666655 2233222222222222 688888888888877664 35566777766542 1222 244
Q ss_pred eeHHHHHHHHH----hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHH
Q 005943 285 ALWNSMISGYV----LNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGS 360 (668)
Q Consensus 285 ~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (668)
..|...+.-+. .+++.+.+..+|++.+.....--...|..... +....+. ..+..+......
T Consensus 86 ~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~--~~~~~~~~~~~~----------- 151 (493)
T 2uy1_A 86 GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNK--ITGKKIVGDTLP----------- 151 (493)
T ss_dssp HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCH--HHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhcc--ccHHHHHHHHhH-----------
Confidence 55666665443 24567788888988887321111112221111 1111111 222222211110
Q ss_pred HHHHHHHhc-CChHHHHHHHccCCCCChhhHHHHHHHHHhcC--C-----cHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 005943 361 NLIDLYARL-GNVKSALELFHRLPKKDVVAWSGLIMGCTKHG--L-----NSLAYLLFRDMINSNQDVNQFIISSVLKVC 432 (668)
Q Consensus 361 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 432 (668)
.|.+. ..++.+..++.. .+...|...+.--...+ - .+.+..+|++.+... +.++..|...+.-+
T Consensus 152 ----~y~~ar~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~ 223 (493)
T 2uy1_A 152 ----IFQSSFQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYL 223 (493)
T ss_dssp ----HHHHHHHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 00000 001222222221 12334544444322211 1 235667788877653 34466666667777
Q ss_pred ccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH-HHHhccCC----------C--CCHhHHHHHHHHHH
Q 005943 433 SCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDG-LALFKFMP----------E--RDVVSWTGIIVGCG 499 (668)
Q Consensus 433 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~----------~--~~~~~~~~l~~~~~ 499 (668)
...|+++.|..++++.... +.+...+.. |+...+.++. ..+.+... . .....|...+....
T Consensus 224 ~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 224 IGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 7788888888888888877 444333322 2221111111 11111110 0 11234666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-cCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHH
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR-HAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
+.++.+.|..+|++. .. ...+...|......-. ..++.+.|..+|+...+.++ -+...+...++...+.|+.+.|
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHH
Confidence 777889999999888 32 1123334432222111 23368899999998886532 2345566778888888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 579 EQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 579 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
..+|+++. .....|...+.--...|+.+.+..++++..+
T Consensus 374 R~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 374 RALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999884 3577788888877788999988888888775
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.4e-07 Score=73.75 Aligned_cols=114 Identities=11% Similarity=-0.054 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKA 600 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 600 (668)
..+..+...+...|++++|...+++... ..| +...+..+..+|...|++++|.+.++++ . .+.+...+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4566666666667777777777666652 233 4566666777777777777777777665 2 22356677777778
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 601 CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
+.+.|++++|...++++.+..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888877664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=81.64 Aligned_cols=125 Identities=8% Similarity=0.049 Sum_probs=75.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHH-hhhcCCh
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDL-LGQAGCF 575 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~ 575 (668)
+...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++.... .| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 344566777777777766642 334556666667777777777777777776632 33 45556666666 5566666
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 576 --DDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 576 --~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|+++.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 7777766665 2223 4555666666666777777777777777777666644
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=79.08 Aligned_cols=91 Identities=11% Similarity=-0.068 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 005943 460 LTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLV 539 (668)
Q Consensus 460 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 539 (668)
+..+...+...|++++|...|++...++...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44456666777777777777777777777777777777777777777777777777642 33455667777777777777
Q ss_pred HHHHHHHHhccc
Q 005943 540 EEAWTIFTSMKP 551 (668)
Q Consensus 540 ~~a~~~~~~~~~ 551 (668)
++|...+++...
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.3e-07 Score=81.70 Aligned_cols=125 Identities=9% Similarity=-0.070 Sum_probs=68.2
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHhh
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDK----TIWASMLKACETH 604 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 604 (668)
+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++.+.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 344455566666666666665532 343224444555566666666666666554322222 2444555556666
Q ss_pred CCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 605 NNTKLVSIIAEQLLATS--PE-DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++....+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 66666666666665422 33 333555666666666666666666666655443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-07 Score=89.58 Aligned_cols=159 Identities=11% Similarity=0.012 Sum_probs=107.2
Q ss_pred ChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 005943 472 EIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTS 548 (668)
Q Consensus 472 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 548 (668)
++++|...|+.... | +...+..+...+.+.|++++|+..|++..+. .|+... . ..+.+.+. ..
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~----------~-~~~~~~~~-~~ 193 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS----------F-SNEEAQKA-QA 193 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC----------C-CSHHHHHH-HH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhcccc----------C-ChHHHHHH-HH
Confidence 34444444443332 2 3345556666666666666666666666653 232110 0 00111100 00
Q ss_pred cccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 549 MKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 549 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
.....|..+..+|.+.|++++|+..++++ .. +.+...|..+..++...|++++|+..|+++++++|.+..
T Consensus 194 --------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 194 --------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred --------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 01367778888888888888888888877 22 346778888999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhhH-HHHHHHHH
Q 005943 627 KYVMLSNVYATLGMWDSL-SKVRKAGK 652 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a-~~~~~~~~ 652 (668)
++..++.++...|++++| ...++.|.
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 44566554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.9e-05 Score=72.98 Aligned_cols=226 Identities=8% Similarity=-0.014 Sum_probs=162.4
Q ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc--chHhHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---CC
Q 005943 402 LNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA--SLRRGKQVHAFCVKRGFEKEDITLTSLIDMY----LKC---GE 472 (668)
Q Consensus 402 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 472 (668)
..++|++++.+++..+ +-+...|+.--.++...+ +++++...++.+.... +-+..+++.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3457777777777653 122333444444555555 7888888887777664 33444554433333 344 78
Q ss_pred hHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC------HHH
Q 005943 473 IDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAK--EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL------VEE 541 (668)
Q Consensus 473 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~ 541 (668)
+++++.+++.+.+ .|...|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+...+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8999999988874 46667777777777788888 9999999999864 3356677777666777776 889
Q ss_pred HHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhhCCHHHHHHHH
Q 005943 542 AWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDD-AEQLIAEMP-F----KPDKTIWASMLKACETHNNTKLVSIIA 614 (668)
Q Consensus 542 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~~~~~~a~~~~ 614 (668)
+++.++++.. ..| |...|+-+..++.+.|+..+ +.++..+.- . ..+...+..+..++.+.|+.++|.+++
T Consensus 205 El~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999988884 355 68889888888988888555 555777652 1 346778888999999999999999999
Q ss_pred HHHHh-cCCCCchhHHHHHH
Q 005943 615 EQLLA-TSPEDPSKYVMLSN 633 (668)
Q Consensus 615 ~~~~~-~~p~~~~~~~~l~~ 633 (668)
+.+.+ .+|.....|...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99997 79998888776554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.3e-07 Score=70.28 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE--DPSKYVMLSN 633 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 633 (668)
+...+..+...+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4566777888888999999999988877 2 2346778888888899999999999999999999999 9999999999
Q ss_pred HHHhc-CChhhHHHHHHHHHhcCC
Q 005943 634 VYATL-GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 634 ~~~~~-g~~~~a~~~~~~~~~~~~ 656 (668)
++... |++++|.+.+++..+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999988876
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.5e-07 Score=72.57 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=60.8
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
..+..+...+.+.|++++|.+.|++. .. +.+...|..+..++.+.|++++|+..++++++.+|.++.++..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555556666666666666666655 22 23455666666666666677777777777766666666666667777777
Q ss_pred cCChhhHHHHHHHHHhcC
Q 005943 638 LGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 638 ~g~~~~a~~~~~~~~~~~ 655 (668)
.|++++|...+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 777777776666665544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.3e-07 Score=72.35 Aligned_cols=97 Identities=11% Similarity=-0.005 Sum_probs=84.1
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
..+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566778889999999999999988 3334 777888888999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHhcCC
Q 005943 638 LGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 638 ~g~~~~a~~~~~~~~~~~~ 656 (668)
.|++++|+..+++..+..+
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999887655
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=6.8e-07 Score=74.61 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=87.1
Q ss_pred CCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005943 519 LKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIW 594 (668)
Q Consensus 519 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 594 (668)
+.|+. ..+..+...+.+.|++++|...|++... ..| +...|..+..+|...|++++|++.|+++ ...| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45544 3677788889999999999999999984 356 5788889999999999999999999988 3334 56788
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
..+..++.+.|++++|...|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8899999999999999999999999998864
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.2e-07 Score=86.38 Aligned_cols=200 Identities=9% Similarity=-0.056 Sum_probs=149.2
Q ss_pred cccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 005943 434 CLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQE 513 (668)
Q Consensus 434 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 513 (668)
..|++++|..++++..+..- .. .+...++++.|...|. .....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~-----------~a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYA-----------KAAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHH
Confidence 35788889998887766431 11 0111577888877755 456788899999999999998
Q ss_pred HHHCCC---CCC--HHHHHHHHHHhhcCCCHHHHHHHHHhccccc---CCCC-ChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 514 MIQSRL---KPN--EITFLGVLSACRHAGLVEEAWTIFTSMKPEY---GLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 514 m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
..+... .+. ..+|..+..+|...|++++|...+++...-. |-.. ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 111 2478888899999999999999998876321 1111 14678888999988 999999999987
Q ss_pred C-CCC-----C--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 585 M-PFK-----P--DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP------SKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 585 ~-~~~-----p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
. ... + ...++..+...+.+.|++++|+..++++++..|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 111 1 145778888899999999999999999999765443 3667788888899999999999999
Q ss_pred HHhcCC
Q 005943 651 GKKLGE 656 (668)
Q Consensus 651 ~~~~~~ 656 (668)
.. ..+
T Consensus 221 al-~~p 225 (307)
T 2ifu_A 221 SY-SIP 225 (307)
T ss_dssp HT-TST
T ss_pred Hh-CCC
Confidence 88 544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-05 Score=75.92 Aligned_cols=157 Identities=6% Similarity=-0.038 Sum_probs=119.3
Q ss_pred HHHHHHhcCChHHHHHHhccCCC-----CCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE-----RDV----VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK-PN----EITFLG 528 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ 528 (668)
.+..+...|++++|..++++..+ ++. ..+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778889999999999987653 121 13345667777888999999999999984322 22 236889
Q ss_pred HHHHhhcCCCHHHHHHHHHhccccc----CCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEY----GLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-------PFKPD-KTIWA 595 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 595 (668)
+..+|...|++++|...++++.... +..+. ..++..+..+|.+.|++++|.+.+++. ...+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999887421 11222 447889999999999999999998876 12222 56788
Q ss_pred HHHHHHHhhC-CHHHHHHHHHHHHh
Q 005943 596 SMLKACETHN-NTKLVSIIAEQLLA 619 (668)
Q Consensus 596 ~l~~~~~~~~-~~~~a~~~~~~~~~ 619 (668)
.+..++.+.| ++++|.+.+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888999999 46999999999886
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-07 Score=88.17 Aligned_cols=191 Identities=6% Similarity=-0.072 Sum_probs=122.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLS 531 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 531 (668)
+...+..+...+.+.|++++|+..|++... | +...|..+..+|.+.|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344556666777777888888877776653 3 5667777888888888888888888888774 44 4557777788
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCCh-hHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPHL-EHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 610 (668)
++...|++++|...|++.... .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 888888888888888877632 2321 111111111111111111111 2222223333333333 222 36888999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhc-CChhhHHHHHHHHHhc
Q 005943 611 SIIAEQLLATSPEDPSKYVMLSNVYATL-GMWDSLSKVRKAGKKL 654 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 654 (668)
.+.++++.+.+|++......+...+.+. +.+++|.++++.+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998887777777777766 7788999999887764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-06 Score=75.34 Aligned_cols=109 Identities=11% Similarity=-0.014 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 522 NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 522 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
+...+..+...+...|++++|+..|++.... .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456788888889999999999999998843 45 5788888999999999999999999887 3334 577888888
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
.++...|++++|...|++++++.|++...+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 88999999999999999999999998886655443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-06 Score=70.94 Aligned_cols=97 Identities=6% Similarity=-0.054 Sum_probs=56.9
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+...+..+...+...|++++|...|++. .. +.+...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3455555555566666666666655554 11 223455555555566666666666666666666666666666666666
Q ss_pred HhcCChhhHHHHHHHHHhc
Q 005943 636 ATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~ 654 (668)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 6666666666666665543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.6e-06 Score=74.97 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHh
Q 005943 492 TGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLL 569 (668)
Q Consensus 492 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 569 (668)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34566677788888888888877764 455445555555788888999998888866531 1 121 24677788888
Q ss_pred hhcCChHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 570 GQAGCFDDAEQLIAEMPFK---PD--KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
.+.|++++|+..|++.... |. .........++.+.|+.++|...|+++...+|. +.....|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8999999999998877212 43 335666777788899999999999999999988 66665554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=68.87 Aligned_cols=107 Identities=13% Similarity=0.018 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACE 602 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~ 602 (668)
.+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|...+++. ... .+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444555555555666665555555432 1123445555555555555555555555544 111 23444555555555
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 603 THNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
..|++++|...++++.+..|.++..+..++.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5555555555555555555555555444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-06 Score=70.46 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=90.1
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|.++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4678888999999999999999999987 4444 6778888999999999999999999999999999999999999999
Q ss_pred HhcCChhhHHHHHHHHHhcCC
Q 005943 636 ATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...|++++|.+.+++..+..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHhhHHHHHHHHHHHHHhCC
Confidence 999999999999999987665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=69.10 Aligned_cols=98 Identities=15% Similarity=0.226 Sum_probs=89.0
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
...+..+...+...|++++|.+.++++ . .+.+...+..+...+.+.|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 2 33467788889999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHHhcCC
Q 005943 637 TLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 637 ~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|++++|..+++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999988766
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.6e-06 Score=79.93 Aligned_cols=162 Identities=5% Similarity=-0.058 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC--C-C------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMPE--R-D------VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL---KPN--E 523 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~ 523 (668)
..+...+..+...|++++|.+.+.+..+ + . ...+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444567778888999999888864432 1 1 12344466667888899999999999876421 222 3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhC-C------CCC-C
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-----LEHYYCMVDLLGQAGCFDDAEQLIAEM-P------FKP-D 590 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~ 590 (668)
.+|+.+...|...|++++|...+++........|+ ..++..+..+|.+.|++++|.+.+++. . ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999988732111222 258888999999999999999999876 1 111 1
Q ss_pred HHHHHHHHHHHHhhCCHHHH-HHHHHHHHh
Q 005943 591 KTIWASMLKACETHNNTKLV-SIIAEQLLA 619 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 619 (668)
..+|..+...+.+.|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788888889999999999 788888776
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=5.9e-07 Score=75.10 Aligned_cols=114 Identities=7% Similarity=-0.034 Sum_probs=87.0
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005943 511 FQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF 587 (668)
Q Consensus 511 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 587 (668)
++++.+ +.|+. ..+..+...+...|++++|...|++.... .| +...|..+..+|...|++++|.+.|+++ ..
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444443 34543 35666777888889999999888888742 44 5777888888889999999999988877 23
Q ss_pred CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 588 KP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 588 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
.| +...+..+..++...|++++|...|+++++..|+++....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 33 5667888888899999999999999999999888776543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-06 Score=75.99 Aligned_cols=169 Identities=7% Similarity=-0.088 Sum_probs=101.6
Q ss_pred HHhcCChHHHHHHhccCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHH
Q 005943 467 YLKCGEIDDGLALFKFMPER---DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAW 543 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 543 (668)
....|+++++.+.|+..... ....+..+...+...|++++|+..|++..+. .|+...+... ....-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~- 82 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK- 82 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH-
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH-
Confidence 33445666666666543321 3345666666677777777777777777663 2221100000 00000
Q ss_pred HHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 544 TIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 544 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
... .....+..+..+|.+.|++++|+..+++. . .+.+...+..+..++...|++++|...++++++..
T Consensus 83 --~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 83 --KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred --HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 000 01356777788888888888888888876 2 23467788888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChhhHH-HHHHHHHhcCC
Q 005943 622 PEDPSKYVMLSNVYATLGMWDSLS-KVRKAGKKLGE 656 (668)
Q Consensus 622 p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~ 656 (668)
|.++.++..++.++...|+.+++. ..++.+...+.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999998888 66777766554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-06 Score=70.35 Aligned_cols=110 Identities=13% Similarity=-0.001 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 005943 523 EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWAS 596 (668)
Q Consensus 523 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 596 (668)
...+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|.+.+++. ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3445555555666666666666666655 23444 445555555566666666666655554 1122 3445555
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+..++...|++++|...++++++..|.+..++..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 555555666666666666666666666555555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.2e-06 Score=69.27 Aligned_cols=99 Identities=11% Similarity=0.015 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
+...+..+...+...|++++|.+.|++. ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4667777777888888888888888776 45565 456677777777888888888888888888888877888888
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 NVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+|...|++++|...+++..+..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 888888888888888887776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.5e-06 Score=73.58 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=67.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhccccc---CCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C---CCC-C----H
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEY---GLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P---FKP-D----K 591 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~ 591 (668)
.+..+...+...|++++|...+++..... +..| ....+..+...|...|++++|.+.+++. . ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 44444555555555555555554443210 1111 1334555555556666666655555544 0 011 1 2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCC----chhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLATS--PED----PSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
..+..+...+...|++++|...++++.+.. ..+ ..++..++.++...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 234555556666677777777776666532 111 12345667777777777777777666654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-06 Score=75.18 Aligned_cols=122 Identities=6% Similarity=0.046 Sum_probs=93.8
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhhCCH--
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKA-CETHNNT-- 607 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~-~~~~~~~-- 607 (668)
+...|++++|...+++.... .+.+...+..+..+|...|++++|...++++ ... .+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888887743 2235678888888899999999999988877 222 356677777777 6678887
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 608 KLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 608 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++|...++++++..|.++..+..++.+|...|++++|...++++.+..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 8899999999999998888888999999999999999999988887766
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=5e-06 Score=66.04 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=77.4
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
...+..+...+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455667777888888888888888876 2 23366677777778888888888888888888888888888888888888
Q ss_pred hcCChhhHHHHHHHHHhcCC
Q 005943 637 TLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 637 ~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|++++|...+++..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 88888888888888777655
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-06 Score=68.98 Aligned_cols=93 Identities=8% Similarity=-0.010 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc-------hhHHHH
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP-------SKYVML 631 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l 631 (668)
.+..+...+.+.|++++|++.|++. ...| +...|..+..++.+.|++++|++.+++++++.|.+. .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445566666666666666666655 2223 455566666666666677777777776666655543 245556
Q ss_pred HHHHHhcCChhhHHHHHHHHHh
Q 005943 632 SNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 632 ~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
+.++...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666777777776666544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=4.3e-06 Score=67.88 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=89.5
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+...+..+...+...|++++|.+.+++. . .+.+...+..+...+...|++++|...++++.+..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4667888899999999999999999987 2 3346778888999999999999999999999999999999999999999
Q ss_pred HhcCChhhHHHHHHHHHhcCC
Q 005943 636 ATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...|++++|...+++..+..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999988765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=69.74 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=55.5
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCCC-h---hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEPH-L---EHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLK 599 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 599 (668)
+...+...|++++|...|+++... .|+ . ..+..+..++.+.|++++|...++++ ...|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 444555666666666666666532 232 2 35555666666666666666666555 11222 344555555
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPEDPSKYVML 631 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 631 (668)
++...|++++|...++++.+..|+++......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 56666666666666666666666655444333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.4e-06 Score=67.54 Aligned_cols=109 Identities=9% Similarity=-0.080 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKAC 601 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 601 (668)
.+..+...+.+.|++++|...|++.... .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4555566666777777777777776632 33 4667777777777777777777777766 2233 566777788888
Q ss_pred HhhCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 005943 602 ETHNNTKLVSIIAEQLLATS------PEDPSKYVMLSNVYA 636 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 636 (668)
...|++++|...++++++.+ |.++.+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88888888888888888888 777777776665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-06 Score=69.81 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKAC 601 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 601 (668)
.+..+...+...|++++|...|++.... .| +...|..+..+|.+.|++++|...|++. ... .+...+..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4555566677778888888877777632 44 5667777777888888888888888776 222 3455677778888
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
...|++++|...++++++..|+++.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 8888999999999998888888776654433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.5e-06 Score=72.68 Aligned_cols=152 Identities=14% Similarity=-0.015 Sum_probs=100.2
Q ss_pred hcCChHHHHH---HhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHH
Q 005943 469 KCGEIDDGLA---LFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS----RLKPN-EITFLGVLSACRHAGLVE 540 (668)
Q Consensus 469 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~ 540 (668)
..|++++|.+ .+..-.......+..+...+...|++++|+..+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 544322234556777777777788888888887776652 22222 235777777888888888
Q ss_pred HHHHHHHhcccccCCCC-C----hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhhCCH
Q 005943 541 EAWTIFTSMKPEYGLEP-H----LEHYYCMVDLLGQAGCFDDAEQLIAEMP----FKPD----KTIWASMLKACETHNNT 607 (668)
Q Consensus 541 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~ 607 (668)
+|...+++......-.+ + ...+..+...+...|++++|...+++.- ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877664311122 1 3457778888888899988888887651 1122 22456677778889999
Q ss_pred HHHHHHHHHHHhc
Q 005943 608 KLVSIIAEQLLAT 620 (668)
Q Consensus 608 ~~a~~~~~~~~~~ 620 (668)
++|...++++.+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988774
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-05 Score=68.44 Aligned_cols=128 Identities=14% Similarity=0.000 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDL 568 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 568 (668)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.... .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667778888888999999888888752 335667888888888899999999998888743 23357788888889
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhhCCHHHHHHHHHHHHh
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKP-DKTIWAS--MLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
+...|++++|.+.++++ ...| +...+.. ....+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999998877 2233 4444433 33336778899999988887765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.1e-06 Score=70.41 Aligned_cols=93 Identities=11% Similarity=-0.022 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVD 567 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 567 (668)
..+..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..+++.... .| +...|..+..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 345555555555666666666666555531 223445555555555666666666665555522 33 3455555555
Q ss_pred HhhhcCChHHHHHHHHhC
Q 005943 568 LLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~ 585 (668)
+|...|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 666666666666555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.3e-07 Score=70.52 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHhcccccCC-CC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHH
Q 005943 536 AGLVEEAWTIFTSMKPEYGL-EP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVS 611 (668)
Q Consensus 536 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 611 (668)
.|++++|+..|++..+. +. .| +...+..+..+|...|++++|.+.+++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45556666666665521 10 12 2445555555555666666666655555 1122 3445555555555556666666
Q ss_pred HHHHHHHhcCCCCchh
Q 005943 612 IIAEQLLATSPEDPSK 627 (668)
Q Consensus 612 ~~~~~~~~~~p~~~~~ 627 (668)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 6666665555555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.2e-06 Score=68.92 Aligned_cols=64 Identities=13% Similarity=-0.023 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLAT-------SPEDPSKY----VMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..+++..+..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 7778888888888888888888888888 89888888 8889999999999999999888876543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6.3e-06 Score=66.94 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC----CCC----HHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF----KPD----KTIW 594 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 594 (668)
..+..+...+...|++++|...+++.... .+.+...+..+..+|...|++++|...++++ .. .++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666777778888888888888887743 2335667777778888888888888877766 11 122 5566
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
..+...+...|++++|...++++.+..| ++.....+..+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 7777777788888888888888887776 776666666655443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=7.3e-06 Score=67.35 Aligned_cols=112 Identities=6% Similarity=-0.163 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHH
Q 005943 522 NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASML 598 (668)
Q Consensus 522 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~ 598 (668)
+...+..+...+...|++++|...|++.... .| +...+..+..++...|++++|...+++. .. +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4556666666777777777777777776632 33 4566777777777777777777777766 22 23566777777
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPE-----DPSKYVMLSNVYA 636 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 636 (668)
.++...|++++|...++++.+..|+ +..+...+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888887766 4555555554433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.6e-06 Score=70.49 Aligned_cols=111 Identities=13% Similarity=0.000 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccC------C---------CC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYG------L---------EP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P 586 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 586 (668)
..+......+.+.|++++|...|++...... - .| +...|..+..+|.+.|++++|+..+++. .
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3566667777778888888887777763200 0 11 1345555666666666666666666555 2
Q ss_pred CC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc-hhHHHHHHH
Q 005943 587 FK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP-SKYVMLSNV 634 (668)
Q Consensus 587 ~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 634 (668)
.. .+...|..+..++...|++++|...++++++++|+++ .+...+..+
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 22 2455555566666666666666666666666666655 333344333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.16 E-value=5.6e-06 Score=84.30 Aligned_cols=117 Identities=9% Similarity=-0.016 Sum_probs=93.4
Q ss_pred HHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCC
Q 005943 530 LSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNN 606 (668)
Q Consensus 530 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 606 (668)
...+.+.|++++|.+.+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34456778888888888887743 44 4778888888888888888888888877 3334 57788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCChhhHHHHHH
Q 005943 607 TKLVSIIAEQLLATSPEDPSKYVMLSNV--YATLGMWDSLSKVRK 649 (668)
Q Consensus 607 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 649 (668)
+++|.+.++++++..|++...+..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998888 888999999999988
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00055 Score=64.99 Aligned_cols=171 Identities=9% Similarity=0.009 Sum_probs=96.0
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc-chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-ChH
Q 005943 398 TKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA-SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKC-G-EID 474 (668)
Q Consensus 398 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 474 (668)
.+.+..++|++++++++..+. -+...|+.--..+...+ .++++...++.+.... +-+..+++.-...+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 334455678888887776542 12233443333444445 4677777777666554 34555555555455444 5 677
Q ss_pred HHHHHhccCCCC---CHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC-----
Q 005943 475 DGLALFKFMPER---DVVSWTGIIVGCGQNGRAK--------EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL----- 538 (668)
Q Consensus 475 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----- 538 (668)
+++++++.+.+. |...|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 777777776653 4445554444444444444 7777777777753 3355566666666666554
Q ss_pred --HHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCC
Q 005943 539 --VEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGC 574 (668)
Q Consensus 539 --~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 574 (668)
++++++.++++.. ..| |...|+-+-..+.+.|+
T Consensus 222 ~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCC
Confidence 4666666666653 244 45556555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.15 E-value=7.5e-06 Score=83.01 Aligned_cols=159 Identities=8% Similarity=-0.018 Sum_probs=102.1
Q ss_pred CChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 005943 471 GEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFT 547 (668)
Q Consensus 471 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 547 (668)
+++++|...|+.... | ....|..+...+.+.|++++|+..|++.++. .|+...+ . .+...+ ..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~ 313 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SE 313 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HH
Confidence 344445444443332 1 2345666666777777777777777776663 2221100 0 000000 00
Q ss_pred hcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 548 SMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 548 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
. .....|..+..+|.+.|++++|+..++++ .. +.+...|..+..++...|++++|+..|+++++++|.+.
T Consensus 314 ~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 314 S--------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred H--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 0 01356777888888888888888888877 22 34677888888899999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChhhHHHH-HHHH
Q 005943 626 SKYVMLSNVYATLGMWDSLSKV-RKAG 651 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~-~~~~ 651 (668)
.++..++.++...|+++++.+. ++.|
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887643 4444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7.5e-05 Score=70.89 Aligned_cols=229 Identities=11% Similarity=0.072 Sum_probs=159.6
Q ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-ChHHHHHHh
Q 005943 402 LNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG-EIDDGLALF 480 (668)
Q Consensus 402 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~ 480 (668)
++..+...++.+...+ +..++|..+.+.+.... +-+..+++.--..+...| .++++++++
T Consensus 52 ~y~~~~~~~r~~~~~~------------------e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE------------------EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455666666665543 34467888888887775 445556666666667777 599999999
Q ss_pred ccCCC---CCHhHHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH--------HHHHHHH
Q 005943 481 KFMPE---RDVVSWTGIIVGCGQN-G-RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVE--------EAWTIFT 547 (668)
Q Consensus 481 ~~~~~---~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~ 547 (668)
+.+.. .+...|+.-...+.+. + ++++++++++++.+.. +-|...|+.....+.+.|.++ ++++.++
T Consensus 113 ~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 113 NEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 98874 3556777666666665 6 8999999999999853 335667776666665555555 8999999
Q ss_pred hcccccCCCC-ChhHHHHHHHHhhhcCC-------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCH----------
Q 005943 548 SMKPEYGLEP-HLEHYYCMVDLLGQAGC-------FDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNT---------- 607 (668)
Q Consensus 548 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~---------- 607 (668)
++... .| |...|+....++.+.+. ++++++.++++ ...| |...|+-+-..+.+.|..
T Consensus 192 k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~ 268 (349)
T 3q7a_A 192 EMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268 (349)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred HHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence 88853 45 67888888888888876 68888888777 3344 677787777666666553
Q ss_pred ----------HHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 608 ----------KLVSIIAEQLLATS------PEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 608 ----------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
....+....+.... +.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 269 YTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22333333333322 46677888999999999999999999999864
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-06 Score=75.71 Aligned_cols=121 Identities=8% Similarity=-0.033 Sum_probs=86.8
Q ss_pred hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-C----------------HHHHH
Q 005943 534 RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-D----------------KTIWA 595 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~ 595 (668)
...|+++.+.+.++..... .......+..+...+.+.|++++|.+.|++. ...| + ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3445555555544433211 1112445666677777777777777777765 1111 1 26788
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 596 SMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 596 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+..++.+.|++++|+..++++++..|.++.++..++.+|...|++++|...+++..+..+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 8888899999999999999999999999999999999999999999999999999987765
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.8e-06 Score=81.37 Aligned_cols=149 Identities=9% Similarity=-0.051 Sum_probs=83.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
...+..+...+.+.|++++|+..|++..+. .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 445677777888889999999999988873 455432 233444444433221 137788889
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHhcCChhhH
Q 005943 568 LLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNV-YATLGMWDSL 644 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a 644 (668)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|++++++.|.++.++..+..+ ....+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877 3334 677888899999999999999999999999999999999888887 4456778888
Q ss_pred HHHHHHHHhcCC
Q 005943 645 SKVRKAGKKLGE 656 (668)
Q Consensus 645 ~~~~~~~~~~~~ 656 (668)
...++.+.+..+
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 889988877666
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.6e-05 Score=63.11 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=63.8
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 005943 563 YCMVDLLGQAGCFDDAEQLIAEM-PFKPD-K---TIWASMLKACETHNNTKLVSIIAEQLLATSPED---PSKYVMLSNV 634 (668)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 634 (668)
..+...+...|++++|.+.|+++ ...|+ . ..+..+..++.+.|++++|...++++.+..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556666777777777777765 22232 2 355666666777777777777777777777777 5667777777
Q ss_pred HHhcCChhhHHHHHHHHHhcCC
Q 005943 635 YATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 635 ~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
|...|++++|...++.+.+..+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHHHCC
Confidence 7777777777777777766544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=8.1e-06 Score=66.27 Aligned_cols=95 Identities=6% Similarity=-0.050 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCC-CCC----hhHHHH
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGL-EPH----LEHYYC 564 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~p~----~~~~~~ 564 (668)
.+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++......- .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555555666666666666555532 223445555555555566666666665555432100 111 445555
Q ss_pred HHHHhhhcCChHHHHHHHHhC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+..+|...|++++|.+.++++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 555566666666666665554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.08 E-value=2.1e-05 Score=73.90 Aligned_cols=108 Identities=6% Similarity=-0.168 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 522 NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 522 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
+...+..+...+...|++++|...|++.... .| +...|..+..+|.+.|++++|.+.++++ ...| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456667777778888888888888877743 44 5677777888888888888888888776 3344 566777777
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
.++...|++++|...++++.++.|+++..+...+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 113 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH
Confidence 7788888888888888888887776654443333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-05 Score=62.23 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=60.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP---DKTIWASMLKA 600 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 600 (668)
.+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555556666666666666665532 1223455666666666666666666666655 2223 45666667777
Q ss_pred HHhh-CCHHHHHHHHHHHHhcCCCCc
Q 005943 601 CETH-NNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 601 ~~~~-~~~~~a~~~~~~~~~~~p~~~ 625 (668)
+... |++++|.+.++++.+..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 777777777777777777653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00028 Score=66.72 Aligned_cols=179 Identities=10% Similarity=0.017 Sum_probs=103.3
Q ss_pred HHHHHHhccCCC---CCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC-HHHHHHHHH
Q 005943 474 DDGLALFKFMPE---RDVVSWTGIIVGCGQNG--RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL-VEEAWTIFT 547 (668)
Q Consensus 474 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~ 547 (668)
++++.+++.+.. .+..+|+.-...+...+ ++++++.+++++.+.. +-|...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 344444444432 23444554444444444 3666777777766642 2344555555555555565 466666666
Q ss_pred hcccccCCCC-ChhHHHHHHHHhhhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh------
Q 005943 548 SMKPEYGLEP-HLEHYYCMVDLLGQA--------------GCFDDAEQLIAEM-PFKP-DKTIWASMLKACETH------ 604 (668)
Q Consensus 548 ~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 604 (668)
.+... .| |...|+....++.+. +.++++++.++++ ...| |...|+-+-..+.+.
T Consensus 170 ~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 170 SLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 66632 33 455555555444443 3466777777666 2233 555665444444433
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH---HhcCChhhHHHHHHHHHhcCC
Q 005943 605 -----NNTKLVSIIAEQLLATSPEDPSKYVMLSNVY---ATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 605 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.++++++.++++++..|++..++..++... ...|..+++...+.++.+..+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 4577888888888888888866655554432 245777788888888877655
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=68.28 Aligned_cols=129 Identities=13% Similarity=-0.000 Sum_probs=79.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHH
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP----FKPD----KTI 593 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~ 593 (668)
+..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++.. ..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444455555555555555544421000011 1355566666666777777666666541 1111 335
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCC------CCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSP------EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
+..+...+...|++++|...++++.+..+ ....++..++.++...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66667777888888888888888876421 12456778889999999999999998887653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=77.94 Aligned_cols=137 Identities=12% Similarity=0.011 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVD 567 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 567 (668)
..+..+...+.+.|++++|+..|++.++. .|... .... .++.. ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 34666677777777788887777777652 11100 0000 11111 1223 3677888999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHH
Q 005943 568 LLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLS 645 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 645 (668)
+|.+.|++++|++.++++ ...| +...|..+..++...|++++|...+++++++.|++..++..+..++...++++++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4445 67788889999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 005943 646 KV 647 (668)
Q Consensus 646 ~~ 647 (668)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 54
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=63.99 Aligned_cols=58 Identities=7% Similarity=-0.024 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|++.+++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555555555555553 232 3345555555555555555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.6e-05 Score=75.40 Aligned_cols=138 Identities=13% Similarity=0.032 Sum_probs=83.4
Q ss_pred cchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC----------------HhHHHHHHHH
Q 005943 436 ASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD----------------VVSWTGIIVG 497 (668)
Q Consensus 436 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----------------~~~~~~l~~~ 497 (668)
+++++|...++...+.. +.....+..+...|.+.|++++|+..|++... |+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443322221 22466788889999999999999999987653 32 3556666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 576 (668)
|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|++..+ +.| +...+..+..++.+.|+.+
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666642 22344566666666666666666666666653 233 3445555555555555555
Q ss_pred HH
Q 005943 577 DA 578 (668)
Q Consensus 577 ~A 578 (668)
+|
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.8e-05 Score=77.57 Aligned_cols=163 Identities=7% Similarity=-0.135 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHhhcCCCHHHHHHHHHhcccc---cCCCCC-hhH
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNE----ITFLGVLSACRHAGLVEEAWTIFTSMKPE---YGLEPH-LEH 561 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 561 (668)
+..+...|...|++++|.+.+.++...- ..++. ...+.+...+...|+++.|..+++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666777777777777766655421 11111 12233333445566777777666655421 122222 445
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC----C---CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCC----ch
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEM----P---FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATS---PED----PS 626 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~----~---~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 626 (668)
+..++..|...|++++|..+++++ . .+| ....+..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777655 1 112 23356666677777777777777777776632 222 23
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.+..++..+...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666667777777777777666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=8.1e-06 Score=64.93 Aligned_cols=86 Identities=9% Similarity=-0.006 Sum_probs=60.9
Q ss_pred hcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHH
Q 005943 571 QAGCFDDAEQLIAEM-PF---KP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLS 645 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 645 (668)
..|++++|+..|++. .. .| +...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777787777776 33 23 34466677777778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCC
Q 005943 646 KVRKAGKKLGE 656 (668)
Q Consensus 646 ~~~~~~~~~~~ 656 (668)
..+++..+..+
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 88877766544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.7e-06 Score=66.13 Aligned_cols=93 Identities=10% Similarity=-0.014 Sum_probs=77.5
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED------PSKYV 629 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 629 (668)
+...+..+...+.+.|++++|.+.+++. .. +.+...+..+..++.+.|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888899999999988877 22 3467788888889999999999999999999999998 77888
Q ss_pred HHHHHHHhcCChhhHHHHHHH
Q 005943 630 MLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 630 ~l~~~~~~~g~~~~a~~~~~~ 650 (668)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999998888766543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.7e-05 Score=67.35 Aligned_cols=63 Identities=8% Similarity=-0.011 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
.|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 344444445555555555555555555555555555555555555555555555555544443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-05 Score=62.15 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=56.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETH 604 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 604 (668)
.+...+.+.|++++|...+++..+. .| +...|..+..++...|++++|+..+++. ...| +...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444555666666666666666632 34 4556666666666667777776666665 2233 455666666677777
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 005943 605 NNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~ 625 (668)
|++++|...++++++.+|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 777777777777777776643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00018 Score=74.53 Aligned_cols=169 Identities=8% Similarity=-0.018 Sum_probs=132.6
Q ss_pred CChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 005943 471 GEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGR----------AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG 537 (668)
Q Consensus 471 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 537 (668)
...++|++.++++.. | +...|+.--.++...|+ ++++++.++++.+.. +-+...|..-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 344677777777764 3 34566665555655666 899999999999853 335668888888888888
Q ss_pred --CHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh-------
Q 005943 538 --LVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAG-CFDDAEQLIAEM-PFKP-DKTIWASMLKACETH------- 604 (668)
Q Consensus 538 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------- 604 (668)
+++++++.++++.+. .| +.+.|+.-..++.+.| .++++++.++++ ...| |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999853 55 6788888888888888 899999999888 4444 677888777776552
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 605 -------NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 605 -------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
+.++++.+.+++++..+|++.++|..+..++.+.|++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0009 Score=63.22 Aligned_cols=192 Identities=13% Similarity=0.117 Sum_probs=126.7
Q ss_pred hHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 005943 438 LRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG--EIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGR-AKEAIAYF 511 (668)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~ 511 (668)
++++..+++.+.... +-+..+++.-.-.+.+.+ .+++++.+++.+.+ .|...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666666666554 445666665555566666 37888888887764 456677766666677777 58899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcC--------------CCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhc----
Q 005943 512 QEMIQSRLKPNEITFLGVLSACRHA--------------GLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQA---- 572 (668)
Q Consensus 512 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---- 572 (668)
+++++.. +-|...|+.....+... +.++++++.+..... ..| |...|+-+--.+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCcc
Confidence 8888853 33445555554444332 447788888888773 356 566666554455444
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 573 -------GCFDDAEQLIAEM-PFKPDKTIWASMLKA-----CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 573 -------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+.++++++.++++ ...||. .|..+..+ ....+..++....+.++.+++|....-|..+...+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4577888888877 455654 34332222 22467888999999999999999988888776544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.89 E-value=6.1e-05 Score=57.65 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
+...+..+...+...|++++|+..++++++.+|.++.+|..++.+|...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677778888888888888888888888888888888888888888888888888888877654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00014 Score=73.43 Aligned_cols=160 Identities=10% Similarity=-0.008 Sum_probs=119.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKPN----------------EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH 558 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 558 (668)
...+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456777888999988888887421111 124778889999999999999999988754332222
Q ss_pred h----hHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------
Q 005943 559 L----EHYYCMVDLLGQAGCFDDAEQLIAEM-------PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLAT------ 620 (668)
Q Consensus 559 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 620 (668)
. .+.+.+...+...|++++|.++++.. ...+. ..++..+...+...|++++|..+++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23445556667788999999888765 22232 457778888999999999999999998873
Q ss_pred CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 621 SPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 621 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
.|....++..++.+|...|++++|..++++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2233567889999999999999999999988764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.2e-05 Score=77.18 Aligned_cols=123 Identities=11% Similarity=0.060 Sum_probs=88.9
Q ss_pred hhcCCCHHHHHHHHHhcccccC--CC---C-ChhHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYG--LE---P-HLEHYYCMVDLLGQAGCFDDAEQLIAEM---------PFKPD-KTIWAS 596 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~--~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 596 (668)
+...|++++|+.++++...... +. | ...+++.|..+|...|++++|..++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456777777666655543211 11 2 2457778888888888888888777765 23344 336788
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHh-----cCCCCchh---HHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLA-----TSPEDPSK---YVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+...|...|++++|+.+++++++ +.|+.|.+ ...+..++.+.|++++|..+++++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999887 45665544 4578888889999999999999998754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.9e-05 Score=74.21 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR 534 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 534 (668)
...+..+...+.+.|++++|...|++... |+... +...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45577788889999999999999987653 32221 222333333332221 136777788888
Q ss_pred cCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhhCCHHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDK-TIWASMLKA-CETHNNTKLV 610 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~~~~~~a 610 (668)
+.|++++|+..+++.... .| +...|..+..+|...|++++|...|+++ ...|+. ..+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999998888888742 45 5778888888888999999999988887 445543 344444443 2345677788
Q ss_pred HHHHHHHHhcCCCCc
Q 005943 611 SIIAEQLLATSPEDP 625 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~ 625 (668)
...|++++...|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 888998888887764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.1e-05 Score=63.22 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hh
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK-PN----EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LE 560 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 560 (668)
++..+...+...|++++|+..+++..+..-. ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455556666666666666666665542100 11 125666666777777777777777766532111111 34
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEMP----FKP----DKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
.+..+..++...|++++|.+.+++.- ... ....+..+...+...|++++|...++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56677777778888888877776651 111 13356667777888899999999998887743
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.83 E-value=2.1e-05 Score=64.83 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PF-------KPD-KTIW----ASMLKACETHNNTKLVSIIAEQLLATSPEDPSK 627 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 627 (668)
.|..+..++.+.|++++|+..+++. .. .|+ ...| .....++...|++++|+..|++++++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6666666777777777766666554 23 664 4567 888889999999999999999999999998777
Q ss_pred HHHHHHH
Q 005943 628 YVMLSNV 634 (668)
Q Consensus 628 ~~~l~~~ 634 (668)
+..+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 6555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00011 Score=54.81 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=62.4
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
...+..+...+...|++++|...+++. .. +.+...+..+...+.+.|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777777888888888877766 22 2356677778888888888888888888888888888888888888877
Q ss_pred hcC
Q 005943 637 TLG 639 (668)
Q Consensus 637 ~~g 639 (668)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.82 E-value=7.3e-05 Score=59.02 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=32.7
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
...+..+..+|...|++++|...+++. .. +.+...|..+..++...|++++|...++++.+..|
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 445555555555555555555555544 11 22344455555555555555555555555555444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.73 E-value=8.9e-05 Score=72.50 Aligned_cols=114 Identities=10% Similarity=-0.019 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKP-DKTIWASMLKACE 602 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 602 (668)
..+..+...+.+.|++++|...|++..+. .+... .....+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 45666777777888888888877777631 11000 000111111 1122 4567888888999
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 603 THNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.|++++|+..++++++.+|.++.++..++.+|...|++++|...+++..+..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999988765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.73 E-value=8e-05 Score=75.43 Aligned_cols=66 Identities=3% Similarity=-0.051 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|+..++++.+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 467888889999999999999999999999999999999999999999999999999999988766
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=3.5e-05 Score=63.34 Aligned_cols=86 Identities=12% Similarity=0.075 Sum_probs=67.7
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 571 QAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNN----------TKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
+.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445567777777665 2233 56666666666666655 56999999999999999999999999999987
Q ss_pred C-----------ChhhHHHHHHHHHhcCC
Q 005943 639 G-----------MWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 639 g-----------~~~~a~~~~~~~~~~~~ 656 (668)
| ++++|++.+++..+.++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 5 89999999999988776
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00027 Score=52.75 Aligned_cols=71 Identities=14% Similarity=0.019 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 005943 588 KPDKTIWASMLKACETHNN---TKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKK 658 (668)
Q Consensus 588 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 658 (668)
+++...+..+..++...++ .++|..+++++++.+|+++.++..++..+.+.|++++|+.+++++.+..+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3566777777777654444 7899999999999999999999999999999999999999999998876643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.64 E-value=5.9e-05 Score=76.73 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=84.3
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 563 YCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
..+...+.+.|++++|.+.++++ ...| +...|..+..++.+.|++++|+..++++++.+|.++.++..++.+|.+.|+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34455678899999999999987 3344 578899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCC
Q 005943 641 WDSLSKVRKAGKKLGE 656 (668)
Q Consensus 641 ~~~a~~~~~~~~~~~~ 656 (668)
+++|.+.+++..+..+
T Consensus 90 ~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 90 FRAALRDYETVVKVKP 105 (477)
T ss_dssp HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999988766
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00019 Score=55.98 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 589 PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 589 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++...+..+...+...|++++|...++++++..|.++.++..++.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34567888888999999999999999999999999999999999999999999999999999988766
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00042 Score=56.61 Aligned_cols=88 Identities=8% Similarity=-0.078 Sum_probs=43.2
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----
Q 005943 566 VDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT---- 637 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 637 (668)
...|...+..++|.+.|++.-...+...+..+...|.. .+++++|...|+++.+. .++.....|+.+|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 109 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGV 109 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCC
Confidence 33333333344444444433212234444444444444 45555555555555544 334555566666655
Q ss_pred cCChhhHHHHHHHHHhcC
Q 005943 638 LGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 638 ~g~~~~a~~~~~~~~~~~ 655 (668)
.+++++|.+++++..+.|
T Consensus 110 ~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 556666666666555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00039 Score=51.72 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|...+++..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3456777888899999999999999999999999999999999999999999999999999988765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0022 Score=66.35 Aligned_cols=150 Identities=9% Similarity=0.043 Sum_probs=123.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCC----------HHHHHHHHHhcccccCCCC-ChhHHHHHHHHh
Q 005943 502 GRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGL----------VEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLL 569 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 569 (668)
...++|++.++++.+. .|+. ..|+.--.++...|+ ++++++.++.+... .| +...|..-..++
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 3456889999999984 5654 457766666666666 89999999999853 45 678888888888
Q ss_pred hhcC--ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc------
Q 005943 570 GQAG--CFDDAEQLIAEM-P-FKPDKTIWASMLKACETHN-NTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL------ 638 (668)
Q Consensus 570 ~~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 638 (668)
.+.| +++++++.++++ . .+.+...|+.-..++.+.| .++++.+.++++++.+|.+.++|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8999 679999999998 3 3457888888888888888 899999999999999999999999999998874
Q ss_pred --------CChhhHHHHHHHHHhcCC
Q 005943 639 --------GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 639 --------g~~~~a~~~~~~~~~~~~ 656 (668)
+.++++.++++......+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999988887766
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.014 Score=45.13 Aligned_cols=142 Identities=11% Similarity=0.083 Sum_probs=107.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
+.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34568888999999888773 35566777776666666767777777777643332 24566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 578 AEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 578 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
...-+-.+. .+...+...+..+...|+-+.-.+++..++...|.++..+..++.+|.+.|+..+|.+++++.-++|+|
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666665654 345566778888899999999999999987788888999999999999999999999999999999984
Q ss_pred C
Q 005943 658 K 658 (668)
Q Consensus 658 ~ 658 (668)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00053 Score=53.90 Aligned_cols=77 Identities=10% Similarity=0.067 Sum_probs=50.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 578 AEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 578 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
|++.+++. ...| +...+..+...+...|++++|...++++++.+|.+...+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444 2223 45566666666777777777777777777777777777777777777777777777777766543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00099 Score=50.55 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=58.8
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM-PFKP-DKT-IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMW 641 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 641 (668)
....+.+.|++++|.+.++++ ...| +.. .+..+..++...|++++|...|+++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456778889999999998877 3334 556 77888888888999999999999999999988877632 444
Q ss_pred hhHHHHHHHH
Q 005943 642 DSLSKVRKAG 651 (668)
Q Consensus 642 ~~a~~~~~~~ 651 (668)
+++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.22 E-value=4.5e-05 Score=73.38 Aligned_cols=117 Identities=14% Similarity=-0.019 Sum_probs=67.0
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 325 (668)
++.+|..+-.+|...+.+.-|.-.--.+. ..|| ....++..|-..|.+++.+.+++.-... -......|+.|
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 66777777777888877776665543332 3333 2244566677888888888888876532 23456667766
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCC----------ccchHHHHHHHHHhcCChHHHH
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYEL----------DYIVGSNLIDLYARLGNVKSAL 376 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~ 376 (668)
.-.|++-.-- . +.+.++-..-+. ....|.-++-.|.+-.+++.|.
T Consensus 270 aILYsKY~Pe---K---lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 270 AILYSKFKPQ---K---MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHSSCTT---H---HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCHH---H---HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6666664332 1 222221111111 2345666666666666666654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00043 Score=52.64 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=35.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPS-KYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..+.+.|++++|...++++++..|.++. .+..++.+|...|++++|.+.+++..+..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3445556666666666666666666666 666666666666666666666666655544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00086 Score=67.66 Aligned_cols=88 Identities=8% Similarity=-0.035 Sum_probs=71.2
Q ss_pred HHhhhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHh-----cCCCC---chhH
Q 005943 567 DLLGQAGCFDDAEQLIAEM---------PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLA-----TSPED---PSKY 628 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~ 628 (668)
..+...|++++|..++++. +..|+ ..+++.+..+|...|++++|..+++++++ +.|+. ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999988765 12333 34788999999999999999999999987 34444 4568
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 629 VMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 629 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
..|+.+|..+|++++|..++++..+.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999988753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0071 Score=49.17 Aligned_cols=112 Identities=10% Similarity=-0.056 Sum_probs=91.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cCChHH
Q 005943 502 GRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AGCFDD 577 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 577 (668)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++.... -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999987 44444 667778888899999999998753 456778888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCC
Q 005943 578 AEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 578 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 622 (668)
|.+.|++.-..-+...+..+...|.. .+++++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988434577788888888888 7899999999999988643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0004 Score=57.02 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=43.1
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh-----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChh
Q 005943 576 DDAEQLIAEM-PFKP-DKTIWASMLKACETH-----------NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWD 642 (668)
Q Consensus 576 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 642 (668)
++|+..|++. ...| +...|..+..+|... |++++|++.|+++++++|++......+ ...+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al-------~~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL-------EMTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHH
Confidence 3555555544 2223 344555555555544 689999999999999999975332222 2345
Q ss_pred hHHHHHHHHHhcC
Q 005943 643 SLSKVRKAGKKLG 655 (668)
Q Consensus 643 ~a~~~~~~~~~~~ 655 (668)
+|.++.-.+...+
T Consensus 136 ka~el~~~~~~~~ 148 (158)
T 1zu2_A 136 KAPQLHAEAYKQG 148 (158)
T ss_dssp THHHHHHHHHHSS
T ss_pred hCHhccCcccccc
Confidence 5555555554443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.022 Score=51.62 Aligned_cols=86 Identities=8% Similarity=0.137 Sum_probs=68.2
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----hCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CChhh
Q 005943 575 FDDAEQLIAEM-PFKPD---KTIWASMLKACET-----HNNTKLVSIIAEQLLATSPED-PSKYVMLSNVYATL-GMWDS 643 (668)
Q Consensus 575 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 643 (668)
..+|...+++. ...|+ ...|..+...|.+ .|+.++|.+.|+++++++|+. ..++..++..++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44566666655 45565 5577778877877 489999999999999999975 99999999998885 99999
Q ss_pred HHHHHHHHHhcCC-CCCc
Q 005943 644 LSKVRKAGKKLGE-KKAG 660 (668)
Q Consensus 644 a~~~~~~~~~~~~-~~~~ 660 (668)
|.+++++.....+ ..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 9999999988877 4455
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00098 Score=66.07 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHh-----cCCCC---chhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLA-----TSPED---PSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+++.+..+|...|++++|+.+++++++ ..|+. ...+..|+.+|..+|++++|..++++..
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344445555555555555555555444 12222 2234455555555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00077 Score=65.10 Aligned_cols=150 Identities=7% Similarity=0.009 Sum_probs=90.6
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHH-HHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHh
Q 005943 362 LIDLYARLGNVKSALELFHRLPKKDVVAWS-GLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRR 440 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 440 (668)
.++.+.+.|++......+..+...|....| ++-..|....|++.-... |..|.+-.....
T Consensus 384 vV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~S-------------------Id~ydNFD~i~L 444 (624)
T 3lvg_A 384 AVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTS-------------------IDAYDNFDNISL 444 (624)
T ss_dssp THHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHT-------------------TSSCCCSCTTHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHH-------------------HHHhccccHHHH
Confidence 445566667777777677666666555444 344566666665532211 222233333333
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 005943 441 GKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK 520 (668)
Q Consensus 441 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 520 (668)
|.++ .+ .+-...-..-...|.+.++++++.++..+=. .|.-.|.....+|+.+-|.++++-..+.|
T Consensus 445 A~rL----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g-- 510 (624)
T 3lvg_A 445 AQRL----EK---HELIEFRRIAAYLFKGNNRWKQSVELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE-- 510 (624)
T ss_dssp HHHH----HT---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC--
T ss_pred HHHH----hh---CchHHHHHHHHHHHHhcccHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 3222 11 1122223334566788889999887765432 22224455577889999999999999866
Q ss_pred CCHHHHHHHHHHhhcCCCHHHHHHH
Q 005943 521 PNEITFLGVLSACRHAGLVEEAWTI 545 (668)
Q Consensus 521 p~~~~~~~ll~~~~~~g~~~~a~~~ 545 (668)
+..+|...+-.|...=++|-++++
T Consensus 511 -~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 511 -KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp -STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred -chHHHHHHHHHHhhccChHHHHHH
Confidence 567788888888888888887765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.002 Score=64.01 Aligned_cols=100 Identities=10% Similarity=-0.046 Sum_probs=58.5
Q ss_pred HHHhhcCCCHHHHHHHHHhccccc--CCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-HHH
Q 005943 530 LSACRHAGLVEEAWTIFTSMKPEY--GLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEM---------PFKPD-KTI 593 (668)
Q Consensus 530 l~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 593 (668)
+..+...|++++|+..+++..... -+.|+ ..+++.|+.+|...|++++|+.+++++ +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445556677777777776665321 12222 345666666777777777776666654 12233 224
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHh-----cCCCCchhHH
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLA-----TSPEDPSKYV 629 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 629 (668)
++.+...|...|++++|+.+++++++ ..|+.|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 56666667777777777777777776 3455554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0026 Score=48.32 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
...+..+..+|...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455566666666666666666666666632 1223455666666666666666666666655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0015 Score=61.92 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 589 PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 589 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
.+...|..+...+...|+++.|...+++++.++|. ...|..+++++.-.|++++|.+.+++....++.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34555555555555556666666666666666543 445556666666666666666666666555553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0059 Score=60.47 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=64.5
Q ss_pred cCCCHHHHHHHHHhccccc--CCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEY--GLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEM---------PFKPDK-TIWASML 598 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 598 (668)
..|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|..++++. +..|+. .+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777776666554321 12222 466778888888888888888877765 234443 3678888
Q ss_pred HHHHhhCCHHHHHHHHHHHHh-----cCCCCchhH
Q 005943 599 KACETHNNTKLVSIIAEQLLA-----TSPEDPSKY 628 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 628 (668)
..|...|++++|+.+++++++ ..|+.|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 889999999999999999887 456666443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.71 Score=47.79 Aligned_cols=251 Identities=10% Similarity=0.011 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 359 GSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
-+..+..+.+.+++......+.. ...+...-.....+....|+...|....+++-..| ...+..+..++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 34456667778888888887776 33355555566777777888777777666665444 22333444444444433322
Q ss_pred HhH--HHHHHHHHHhC-----------CCCchh-HHHHHHHHHHhcCChHHHHHHhccCCCCCHh---HHHHHHHHHHhc
Q 005943 439 RRG--KQVHAFCVKRG-----------FEKEDI-TLTSLIDMYLKCGEIDDGLALFKFMPERDVV---SWTGIIVGCGQN 501 (668)
Q Consensus 439 ~~a--~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~ 501 (668)
... .+=++.+...| ++++.. ....++..+. ++..+....... .++.. .+...+.-+.+
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-
Confidence 111 11111111111 111111 1112222211 222222222221 11111 11112222333
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHH
Q 005943 502 GRAKEAIAYFQEMIQSR-LKPNEI--TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
.+.+.|...+......+ +.+... ....+.......+...++...+..... ..++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 36788888887776543 222222 223333344445534555566665432 223433344444445567888888
Q ss_pred HHHHHhCCCCC-C-HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 579 EQLIAEMPFKP-D-KTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 579 ~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
...|+.|+..+ + ..-.--+..++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888885432 2 22222234456677888888888888765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.012 Score=58.44 Aligned_cols=60 Identities=8% Similarity=0.085 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHh-----cCCCC---chhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLA-----TSPED---PSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+++.+..+|...|++++|+.+++++++ ..|++ ...+..|+.+|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 455555555566666666666665554 12222 3345555566666666666666655554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.073 Score=50.51 Aligned_cols=141 Identities=11% Similarity=-0.070 Sum_probs=90.4
Q ss_pred CHhHHHHHHHHHH--hc---CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh----cCC-C---HHHHHHHHHhcccc
Q 005943 487 DVVSWTGIIVGCG--QN---GRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACR----HAG-L---VEEAWTIFTSMKPE 552 (668)
Q Consensus 487 ~~~~~~~l~~~~~--~~---~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~----~~g-~---~~~a~~~~~~~~~~ 552 (668)
+...|...+++.. .. .+..+|..+|++.++ +.|+- ..|..+..++. ..+ . .......++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 4555555554432 22 235778888888888 46663 33433333332 111 1 11111122211111
Q ss_pred cCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 553 YGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 553 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
...+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.++++..++|..+ +|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW 348 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence 123556888888888888889999999999988 4458887887788888999999999999999999999865 4443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0099 Score=48.18 Aligned_cols=91 Identities=13% Similarity=0.039 Sum_probs=62.7
Q ss_pred CHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhhCCHHHH
Q 005943 538 LVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAG---CFDDAEQLIAEM-PFK-P--DKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 538 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a 610 (668)
....+.+-|.+.... + .++..+...+..++.+.+ +.+++..+|++. ... | +...+-.+..++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 345566666655432 3 367778888888888877 556888888776 222 4 344556666677888888888
Q ss_pred HHHHHHHHhcCCCCchhHHH
Q 005943 611 SIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~ 630 (668)
.++++.+++.+|++..+...
T Consensus 91 ~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 88888888888887655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.17 Score=55.45 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=73.1
Q ss_pred HHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHH
Q 005943 365 LYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQV 444 (668)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 444 (668)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|..+.+ |..+...+...++.+....+
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456799999999887764 567899999999999999999999988742 22333333345555555444
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 005943 445 HAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQE 513 (668)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 513 (668)
.+.....| -++....+|.+.|++++|++++ .+.+++++|..+-+.
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 44444433 1233444556666776666654 445566666665443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.13 Score=56.24 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=33.5
Q ss_pred HHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005943 467 YLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 515 (668)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 445677777777766653 45677777777777888887777777654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.031 Score=42.53 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEMP---------FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
.-...|...+.+.|++..|...|+.+- ..+....+..+..++.+.|+++.|...++++.+..|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334455555666666666665555440 12346678888889999999999999999999999999877666
Q ss_pred HH
Q 005943 631 LS 632 (668)
Q Consensus 631 l~ 632 (668)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.15 E-value=1.9 Score=46.50 Aligned_cols=266 Identities=9% Similarity=0.011 Sum_probs=136.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CCC---HHH--HHHH
Q 005943 253 LVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGM--CID---SYT--FTSA 325 (668)
Q Consensus 253 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~---~~t--~~~l 325 (668)
..-+....|+.+++..+++.......+..+.+..-..+.-+.+..|..+++..++.......- .-+ ... -..+
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 344566778888888888776321000111122223334456667766678887777654321 011 111 1112
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCccchHH--HHHHHHHhcCChHHHHHHHccCCC-CChhh--HHHHHHHHHhc
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYELDYIVGS--NLIDLYARLGNVKSALELFHRLPK-KDVVA--WSGLIMGCTKH 400 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~ 400 (668)
--+++-.|..+ +.+...+..+....-. ...... ++...+...|+.+....++..+.+ .+... .-.+.-++...
T Consensus 460 GLGla~~GS~~-eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 460 GIGLAAMGSAN-IEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHHSTTCCC-HHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 12222233322 3444444444432211 111111 233334455776666666665432 22222 23333445577
Q ss_pred CCcHHHHHHHHHHHHcCCCCcHHHH--HHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 005943 401 GLNSLAYLLFRDMINSNQDVNQFII--SSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLA 478 (668)
Q Consensus 401 ~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 478 (668)
|+.+.+..+++.+.... .|....- .++..+|+..|+......++..+.... ..++.....+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888877532 2222222 234457888999988888998887653 2233333333344555677777788
Q ss_pred HhccCCC-CCHhHHH--HHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHH
Q 005943 479 LFKFMPE-RDVVSWT--GIIVGCGQNGRA-KEAIAYFQEMIQSRLKPNEIT 525 (668)
Q Consensus 479 ~~~~~~~-~~~~~~~--~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~ 525 (668)
+++.+.+ .|...-. .+.-+....|.. .+++.++..+.. .++..+
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 8775543 3433322 333334444433 678888888874 455543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.061 Score=39.80 Aligned_cols=69 Identities=9% Similarity=-0.009 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHHhhhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 556 EPHLEHYYCMVDLLGQAGC---FDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 556 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+.+...+..+..++...++ .++|..++++. ...| +......+...+.+.|++++|+..|+++++..|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3466777777777764444 68888888877 3334 56677777788889999999999999999988884
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.026 Score=45.72 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 589 PDKTIWASMLKACETHN---NTKLVSIIAEQLLATS-P-EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 589 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++..+.-.+..++.+.+ +.++++.+++.+.+.+ | .+...+..|+.+|.+.|++++|+++++.+.+..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 45555555555555555 4446666666666655 4 3355566666666666666666666666655444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.045 Score=41.63 Aligned_cols=67 Identities=18% Similarity=-0.002 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATS-------PEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+......+...+.+.+++..|...++.+.+.. +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 44556678888999999999999999998842 33467899999999999999999999999987766
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.21 E-value=1.1 Score=37.36 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=49.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHH
Q 005943 499 GQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
.+.|+++.|.++.+++ .+...|..+.......|+++-|.+.|++... +..+.-.|...|+.++-
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 3455566665555443 2345566666666666666666666665541 33344444455555444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 579 EQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 579 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
.++-+....+-+ ++.....+.-.|+++++.+++.+
T Consensus 80 ~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 433332211111 33333444455666666665544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.17 Score=40.40 Aligned_cols=50 Identities=4% Similarity=-0.108 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
+|.++|.++|+.+++....-..+|...+..-.+.|+.+.|++++.+....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 44444444444444433222334444444444445555554444444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.065 Score=56.44 Aligned_cols=53 Identities=4% Similarity=-0.070 Sum_probs=49.8
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
.-|...|+++.|+++.+++...-|.+-.+|..|+.+|...|+|+.|.-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33667899999999999999999999999999999999999999999999987
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.04 Score=49.96 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=36.0
Q ss_pred hHHHHHHHHhhhc-----CChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-hCCHHHHHHHHHHHHhcCCC
Q 005943 560 EHYYCMVDLLGQA-----GCFDDAEQLIAEM-PFKPD--KTIWASMLKACET-HNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 560 ~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~p~ 623 (668)
..|..+...|.+. |+.++|.+.|++. .+.|+ ..++......+++ .|+.+.+.+.++++++..|.
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3555555555553 6666666666655 33442 4445555555555 36666666666666665544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.38 E-value=1.9 Score=35.87 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH 535 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 535 (668)
+...|..|.+...+.|+++-|.+.|.+..+ +..+.-.|...|+.+.-.++-+.....| -++....++..
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~ 101 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFY 101 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHH
Confidence 344555555555566666666555555443 2333333444444444443333333322 12223333344
Q ss_pred CCCHHHHHHHHHhc
Q 005943 536 AGLVEEAWTIFTSM 549 (668)
Q Consensus 536 ~g~~~~a~~~~~~~ 549 (668)
.|+++++.++|.+.
T Consensus 102 lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 102 NNSTKERSSIFAEG 115 (177)
T ss_dssp HTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHC
Confidence 55555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.16 Score=39.49 Aligned_cols=92 Identities=15% Similarity=0.063 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhhCCHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD---AEQLIAEM-PFK-P--DKTIWASMLKACETHNNTKL 609 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 609 (668)
.....+.+-|.+.... + .|+..+-..+..++.+..+..+ ++.++++. ... | .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555555555432 3 3777777778888888876665 77777776 222 3 22334455566888888999
Q ss_pred HHHHHHHHHhcCCCCchhHHH
Q 005943 610 VSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 610 a~~~~~~~~~~~p~~~~~~~~ 630 (668)
|.+.++.+++.+|++..+...
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 998888888888888665543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.39 Score=37.34 Aligned_cols=79 Identities=8% Similarity=0.042 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHH---HHHHHHhcccccCCCC--ChhHHHHHHHHhhhcCChHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEE---AWTIFTSMKPEYGLEP--HLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 578 (668)
...+.+-|.+....|. |+..+--.+..++.+...... ++.+++.+.+. + .| .....-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344444444433332 444443344444555444333 55555555432 1 12 233333444455555555555
Q ss_pred HHHHHhC
Q 005943 579 EQLIAEM 585 (668)
Q Consensus 579 ~~~~~~~ 585 (668)
.++++.+
T Consensus 94 ~~~~~~l 100 (126)
T 1nzn_A 94 LKYVRGL 100 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.28 E-value=4 Score=40.42 Aligned_cols=170 Identities=9% Similarity=0.029 Sum_probs=103.7
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccC----CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhc
Q 005943 204 LTSLIDMYLKCGEIDDGLALFNFMP----ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAAS 279 (668)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 279 (668)
...|...+...|++.+|..++..+. ....... -...+...++.|...+++..|..++.++......
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~----------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE----------KIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 3567888999999999999998876 1111110 3567888999999999999999999987432221
Q ss_pred CC--CC--eeeHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHH----HHHhccccchHHHHHHHHHHHHh
Q 005943 280 AY--GN--VALWNSMISGYVLNEQNEEAITLLSHIHSS-GMCIDSYTFTSALK----ACINLLNFNSRFALQVHGLIVTS 350 (668)
Q Consensus 280 ~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~----~~~~~~~~~~~~a~~~~~~~~~~ 350 (668)
.. |+ ...|...+..+...+++.+|...|.+.... ...-|...+..++. +..-.+.. ..-..+.......
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~--~~~~~ll~~~~~~ 287 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYG--NLQNDLIHKIQND 287 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCS--STTHHHHHSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHhhc
Confidence 22 22 234566677788899999998888877542 12223332222221 11112211 1122222223333
Q ss_pred CCCCccchHHHHHHHHHhc--CChHHHHHHHccCCCC
Q 005943 351 GYELDYIVGSNLIDLYARL--GNVKSALELFHRLPKK 385 (668)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~ 385 (668)
..-++...+..++.+|... .+++.+.+.|.....+
T Consensus 288 ~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 288 NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 3334566777888888764 4577777777766544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.41 E-value=3.2 Score=32.47 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
....+..+...|+-++-.+++.++... .+|++.....+..+|.+.|+..+|.+++.+.-++
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344455556666666666666664332 3556666666666666666666666666665543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.09 E-value=1 Score=36.03 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=33.0
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 573 GCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 573 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
++.++|.++|+.+. -+.=...|.....--.+.|+.+.|.+++.+++...|.+...+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 45555555555440 0011444555555556677777777777777777766554444433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.51 E-value=2.3 Score=33.66 Aligned_cols=74 Identities=4% Similarity=0.029 Sum_probs=49.4
Q ss_pred CCChhHHHHHHHHhhhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 556 EPHLEHYYCMVDLLGQAGCFD---DAEQLIAEM-PFKP--DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 556 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
.|+..+-..+..++.+..+.+ +++.+++++ ...| .....-.+.-++.+.|++++|.++.+.+++.+|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 567777777777777777544 566666665 2233 2333444556678888888888888888888888765443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.64 E-value=12 Score=36.04 Aligned_cols=163 Identities=13% Similarity=0.001 Sum_probs=74.1
Q ss_pred HHHHHHHHHhccccchHhHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCC-hHHHHHHhccCCC---CCHhHH---
Q 005943 423 FIISSVLKVCSCLASLRRGKQVHAFCVKR-GFEK---EDITLTSLIDMYLKCGE-IDDGLALFKFMPE---RDVVSW--- 491 (668)
Q Consensus 423 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~--- 491 (668)
.....+...|.+.|+.++..+++...+.. +..+ .......+++.+....+ .+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666544322 1111 12234455555544322 2222222222221 011122
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHhhcCCCHHHHHHHHHhcccccC-CCCChhHH
Q 005943 492 ---TGIIVGCGQNGRAKEAIAYFQEMIQS--RLKPNE---ITFLGVLSACRHAGLVEEAWTIFTSMKPEYG-LEPHLEHY 562 (668)
Q Consensus 492 ---~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~ 562 (668)
..++..|...|++.+|..++.++.+. .+.... ..|..-+..|...+++..+...+.......+ +.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14556666677777776666666553 111111 1344445556666677777666665543211 11222221
Q ss_pred H----HHHHHhh-hcCChHHHHHHHHhC
Q 005943 563 Y----CMVDLLG-QAGCFDDAEQLIAEM 585 (668)
Q Consensus 563 ~----~l~~~~~-~~g~~~~A~~~~~~~ 585 (668)
. .-...+. ..+++.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1 1122333 556666666655443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.62 E-value=0.74 Score=35.93 Aligned_cols=74 Identities=4% Similarity=0.029 Sum_probs=47.9
Q ss_pred CCChhHHHHHHHHhhhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 556 EPHLEHYYCMVDLLGQAGCFD---DAEQLIAEM-PFKP--DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 556 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
.|+..+-..+..++.+..+.+ +++.+++++ ...| ....+--+..++.+.|+++.|.++.+.+++..|++..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 466666666777777766543 456666655 2234 2334555666677888888888888888888888765443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.49 E-value=22 Score=38.51 Aligned_cols=248 Identities=8% Similarity=-0.011 Sum_probs=129.7
Q ss_pred HHHHhcCChHHHHHHHccCCCC----Chhh--HHHHHHHHHhcCCcHHHHHHHHHHHHcCC-------CCcHHHHHHH--
Q 005943 364 DLYARLGNVKSALELFHRLPKK----DVVA--WSGLIMGCTKHGLNSLAYLLFRDMINSNQ-------DVNQFIISSV-- 428 (668)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~l-- 428 (668)
-+....|+.++++.++...... +... =..+.-+....|..+++.+++.......- .+....-.++
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456678888999988876642 2222 22233445566666678887777664321 0111111222
Q ss_pred HHHhccccchHhHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCChHHHHHHhccCCC-CCHh--HHHHHHHHHHhcCC
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKRGFEKED--ITLTSLIDMYLKCGEIDDGLALFKFMPE-RDVV--SWTGIIVGCGQNGR 503 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~ 503 (668)
-.++...++. ++...+..+....- +.. ..--++...|+-.|+.+....++..+.+ .+.. -+-.+.-++...|+
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 2233333333 34444444433221 111 1122334445566777777776665432 2222 23334445557788
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEI-TFL---GVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAE 579 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~-~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 579 (668)
.+.+..+++.+... .+.. -|. .+.-+|+..|+.....+++..+..+ ...+..-...+.-++...|+.+.+.
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 88888888888763 2332 232 3445778888987777788888742 2223333333444444567777677
Q ss_pred HHHHhCCCCCCHHHH--HHHHHHHHhhCCH-HHHHHHHHHHH
Q 005943 580 QLIAEMPFKPDKTIW--ASMLKACETHNNT-KLVSIIAEQLL 618 (668)
Q Consensus 580 ~~~~~~~~~p~~~~~--~~l~~~~~~~~~~-~~a~~~~~~~~ 618 (668)
++++.+....|..+- -.+.-+....|+. .++...+..+.
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 777655322233333 3333334444443 45666666665
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.93 E-value=12 Score=34.60 Aligned_cols=148 Identities=11% Similarity=0.053 Sum_probs=93.3
Q ss_pred HHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeH
Q 005943 208 IDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALW 287 (668)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 287 (668)
+......|++=+|.+.++ ++..-|.+.+++++|.+++..-
T Consensus 20 l~~~I~~G~yYEAhQ~~R--------------------------tl~~Ry~~~~~~~eAidlL~~g-------------- 59 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLR--------------------------TIANRYVRSKSYEHAIELISQG-------------- 59 (312)
T ss_dssp HHHHHHHTCHHHHHHHHH--------------------------HHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred HHHHhhccChHHHHHHHH--------------------------HHHHHHHHhcCHHHHHHHHHHH--------------
Confidence 445566778877776654 5566688889999999887765
Q ss_pred HHHHHHHHhCCChhHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHH----hCC--CCccc
Q 005943 288 NSMISGYVLNEQNEEAITL----LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVT----SGY--ELDYI 357 (668)
Q Consensus 288 ~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~ 357 (668)
...+.+.|+...|-++ ++...+.+++++......++..+......+ ..-..+...+.+ .|- .-++.
T Consensus 60 ---a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~-~~r~~fi~~ai~WS~~~g~~~~Gdp~ 135 (312)
T 2wpv_A 60 ---ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSE-PNLKDVITGMNNWSIKFSEYKFGDPY 135 (312)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTC-TTHHHHHHHHHHHHHHTSSCTTCCHH
T ss_pred ---HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCC-chHHHHHHHHHHHHhhcCCCCCCCHH
Confidence 2335667777666554 555667789999888888887776654332 122333334433 222 22667
Q ss_pred hHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHh
Q 005943 358 VGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTK 399 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 399 (668)
....+...|.+.+++.+|+.-|-.-...+...+..++.-+..
T Consensus 136 LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 136 LHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 778888888888888888876653322244444444443333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.39 E-value=11 Score=37.16 Aligned_cols=91 Identities=10% Similarity=0.147 Sum_probs=53.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-----CCCC---HHHHHHHHHHHHhhCCHHHHHHHHHHHHh---cCCCC----ch
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEMP-----FKPD---KTIWASMLKACETHNNTKLVSIIAEQLLA---TSPED----PS 626 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~----~~ 626 (668)
...|+..|...|++.+|.+++.++. ..+. ...+...+..|...+++..|..+++++.. ..+.+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3456667777777777777776652 1111 22444455556677777777777776543 12222 23
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
.+...+..+...++|.+|-+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45566666677777777776666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.07 E-value=1.2 Score=43.42 Aligned_cols=59 Identities=14% Similarity=0.003 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
..++.++...|++.++...++.+...+|-+...+..++.+|.+.|+..+|.+.|+.+.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566667777777777777777777777777777777777777777777766653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.65 E-value=15 Score=34.15 Aligned_cols=164 Identities=12% Similarity=0.056 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhh
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYF----QEMIQSRLKPNEITFLGVLSACR 534 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 534 (668)
+|.++..=|.+.+++++|++++.. -...+.+.|+...|-++. +-..+.+++++......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778889999999887542 334456667766655544 55566788888888777777776
Q ss_pred cCCCH--------HHHHHHHHhcccccCC--CCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 005943 535 HAGLV--------EEAWTIFTSMKPEYGL--EPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETH 604 (668)
Q Consensus 535 ~~g~~--------~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 604 (668)
....- .+|+.+-.. .|- .-|+.....+...|.+.|++.+|...|- .+..+....+..++..+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~----~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKK----FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHH----HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHh
Confidence 65531 233333222 132 2357778889999999999999988883 33334445665555444333
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHhcCChhhHHHHHHHHHh
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYV-MLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
+. |.....|. ..+--|...|+...|...++...+
T Consensus 181 ~~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 181 DE---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp SC---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cC---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 32 22233333 333346778899999887777654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.79 E-value=3.4 Score=30.28 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=43.3
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 577 DAEQLIAEM---PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 577 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
+..+-++.+ ..-|++....+.+.+|.|.+|+..|.++++.++....+...+|..+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344444433 467999999999999999999999999999998866555566766553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.06 E-value=21 Score=40.41 Aligned_cols=139 Identities=13% Similarity=0.071 Sum_probs=68.8
Q ss_pred HHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---------------------
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER--------------------- 486 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------------- 486 (668)
++..+...+..+.+.++... ++.++...-.+..+|...|++++|.+.|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 33344444444444443322 2333333344566777788888888888765420
Q ss_pred -----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC
Q 005943 487 -----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE--I--TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP 557 (668)
Q Consensus 487 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 557 (668)
-..-|..++..+-+.+.++.++++-+..++..-.-+. . .|..+..++...|++++|...+-.+... .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HH
Confidence 0112445555555666666666665555443111111 1 3455556666666666665555444311 12
Q ss_pred ChhHHHHHHHHhhhcCC
Q 005943 558 HLEHYYCMVDLLGQAGC 574 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~ 574 (668)
-......|+..++..|.
T Consensus 970 r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 23444555554544444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.85 E-value=2.1 Score=35.00 Aligned_cols=114 Identities=9% Similarity=0.030 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCChHHHHHHhccCC-----CCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH-HH
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMP-----ERDV-------VSWTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNEI-TF 526 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~-~~ 526 (668)
-.-+..+...|.++.|+-+.+.+. ++++ .++..+..++...+++.+|...|++.++.. .-|... +.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 334556666677777766555432 1221 134455566666666777776666654421 111111 11
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCC
Q 005943 527 LGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFK 588 (668)
Q Consensus 527 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 588 (668)
..+. ....... .....++.+.---+..+|.+.|++++|+.+++.++.+
T Consensus 104 ~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 104 PSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0000 0000000 0012233455555778888888888888888888533
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.52 E-value=2.5 Score=30.94 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 503 RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 503 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
+.-+..+-+..+....+.|++....+.+++|.+.+++..|.++++-++.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 34456666667777778899999999999999999999999999888754 3344556766654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.28 E-value=5 Score=32.77 Aligned_cols=122 Identities=13% Similarity=0.053 Sum_probs=60.9
Q ss_pred CCCCCHH--HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCCh-------hHHHHHHHHhhhcCChHHHHHHHHhC---
Q 005943 518 RLKPNEI--TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL-------EHYYCMVDLLGQAGCFDDAEQLIAEM--- 585 (668)
Q Consensus 518 g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--- 585 (668)
|+.|... ++.--+..+...|.++.|+-+...+..-.+..|+. .++..+.+++...|++..|...|++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4455433 34444556667777777776666544332233332 24555666777777777777776653
Q ss_pred -CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 586 -PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 586 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
..-+ +..+...+. ....... -.. .+.+...-..++..|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCcccccc----ccCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1001 100000000 0000000 000 1233456678999999999999999999865
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.22 E-value=22 Score=33.19 Aligned_cols=132 Identities=12% Similarity=0.024 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHH----HHHHhCCCCCCHHHHHHH
Q 005943 250 LSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLL----SHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~t~~~l 325 (668)
|.++..-|.+.+++++|.+++-.- ...+.+.|+...+.++- +...+.++++|..+...+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 335556688899999999887664 23356667766655544 556667888998888888
Q ss_pred HHHHHhccccchHHHHHHHHHHH----HhCC--CCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHh
Q 005943 326 LKACINLLNFNSRFALQVHGLIV----TSGY--ELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTK 399 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 399 (668)
+..+......+. .-..+.+.+. +.|- .-|+.....+...|.+.+++.+|+.-|-.-.+++...+..++.-+..
T Consensus 101 ~~L~~~~~~~~p-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 101 LGCLRLFQPGEP-VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HHHHTTSCTTCH-HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCc-HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 887777654321 1223333333 3342 23666777788888888888888887743222223455444443333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.19 E-value=21 Score=33.00 Aligned_cols=167 Identities=9% Similarity=-0.013 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHH----HHHHHHHcCCCCcHHHHHHHHHHhcc
Q 005943 359 GSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYL----LFRDMINSNQDVNQFIISSVLKVCSC 434 (668)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ll~~~~~ 434 (668)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|.+ +++-+.+.+.+++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566678888888888887533 2344566777665555 45556667899999888888887765
Q ss_pred ccchH-hHHHHHHHHHH----hCC--CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhc---CCh
Q 005943 435 LASLR-RGKQVHAFCVK----RGF--EKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQN---GRA 504 (668)
Q Consensus 435 ~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 504 (668)
...-+ .-..+.+.+.+ .|- .-++.....+...|.+.|++.+|+.-|-.-...+...+..++.-+.+. |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 22334444443 322 235667788888899999999988876532222344444443333322 222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccc
Q 005943 505 KEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKP 551 (668)
Q Consensus 505 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 551 (668)
.++-- ..-..++ .|.-.|+...|..+++...+
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 22111 1111222 34456788888887776653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.80 E-value=10 Score=30.10 Aligned_cols=69 Identities=7% Similarity=-0.052 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 588 KPDKTIWASMLKACETHNN---TKLVSIIAEQLLATSPE-DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 588 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.|+..+--.+..++.+..+ ..+++.+++.+....|. ....+..|+..+.+.|+|++|+++.+.+.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4555555556666665543 44566677777766663 445666677777777777777777777766554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.74 E-value=3.4 Score=29.98 Aligned_cols=87 Identities=10% Similarity=-0.017 Sum_probs=64.1
Q ss_pred chhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 005943 18 SIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLE 97 (668)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 97 (668)
..++|..+-+.+...+. ...+--.-+..+..+|++++|..+.+.+.-||...|-.+-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 57888888888887663 22222233455778999999999999999999999887654 577888888888888888
Q ss_pred cCCCCCCCchHHH
Q 005943 98 YGSVEPNGFMYSA 110 (668)
Q Consensus 98 ~~~~~p~~~~~~~ 110 (668)
+| . |....|..
T Consensus 97 sg-~-p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-D-PALADFAA 107 (115)
T ss_dssp CS-S-HHHHHHHH
T ss_pred CC-C-HHHHHHHH
Confidence 77 3 55555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.71 E-value=2.9 Score=44.21 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=29.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
+...|+++.|+++-++.... .|+. .+|..|..+|...|+++.|+-.+..+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34456666666666666553 4443 36666666666666666666655555
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.01 E-value=4.3 Score=39.37 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=46.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccc----ccCCCCChhHHHH
Q 005943 493 GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKP----EYGLEPHLEHYYC 564 (668)
Q Consensus 493 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 564 (668)
.++..+...|++++|+..+..+.... +-+...+..++.++.+.|+..+|++.|+++.+ +.|+.|+..+-..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 35556666777777777777766642 33556777777777777777777777776543 3477776655443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.54 E-value=3.6 Score=32.15 Aligned_cols=44 Identities=9% Similarity=-0.021 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 610 VSIIAEQLLATSPE-DPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 610 a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
++.+++.+.+..|. ....+..|+.++.+.|+|++|+++.+.+.+
T Consensus 62 GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 62 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444432 233444444444444444444444444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.19 E-value=3.7 Score=29.90 Aligned_cols=87 Identities=9% Similarity=-0.013 Sum_probs=62.2
Q ss_pred chhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 005943 18 SIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLE 97 (668)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 97 (668)
..++|..+-+.+...+. ...+--.-+..+..+|++++|..+.+.+.-||...|-.+-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 57888888888887663 22222233455778999999999999999999998887654 466777888888878877
Q ss_pred cCCCCCCCchHHH
Q 005943 98 YGSVEPNGFMYSA 110 (668)
Q Consensus 98 ~~~~~p~~~~~~~ 110 (668)
+| . |....|..
T Consensus 98 sg-~-p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-D-PRIQTFVN 108 (116)
T ss_dssp CC-C-HHHHHHHH
T ss_pred CC-C-HHHHHHHH
Confidence 76 3 45444443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.40 E-value=3.7 Score=36.72 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=23.7
Q ss_pred hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 534 RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
.+.|++++|++....-.+ .-+-|...-..|++.|+-.|++++|.+-++.+
T Consensus 8 l~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555555554444442 12224444455555555555555555444433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.05 E-value=3.8 Score=36.64 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=27.1
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+.+.|++++|++.+..- +..| |...-..++..++-.|+++.|..-++-+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34445555555444333 2223 33344444555555555555555555555555553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.12 E-value=49 Score=37.45 Aligned_cols=143 Identities=8% Similarity=-0.035 Sum_probs=71.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhc
Q 005943 493 GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQA 572 (668)
Q Consensus 493 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 572 (668)
.++..+...+.++.+.++... ++-+...--.+..++...|++++|.+.|++... ++..+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhh----------
Confidence 355556666666666554432 233444334455567777777777777777643 332221110
Q ss_pred CChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-CCCc----hhHHHHHHHHHhcCChhhHHH
Q 005943 573 GCFDDAEQLIAEMPF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATS-PEDP----SKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 573 g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~----~~~~~l~~~~~~~g~~~~a~~ 646 (668)
....+...+...-.. ..-..-|..++..+.+.+.++.+.++.+.+++.. +++. ..|..+.+.+.+.|+|++|-.
T Consensus 880 ~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 880 AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 000011111111111 1122345555556666666666666666666533 2222 135556666666677777666
Q ss_pred HHHHHH
Q 005943 647 VRKAGK 652 (668)
Q Consensus 647 ~~~~~~ 652 (668)
.+-.+.
T Consensus 960 aL~~~p 965 (1139)
T 4fhn_B 960 ALMVLS 965 (1139)
T ss_dssp HHHHHH
T ss_pred HHHhCC
Confidence 665444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 668 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 8e-04
Identities = 24/188 (12%), Positives = 61/188 (32%), Gaps = 14/188 (7%)
Query: 460 LTSLIDMYLKCGEIDDGLALFKFMPERD---VVSWTGIIVGCGQNGRAKEAIAYFQEMIQ 516
+L ++ + D +A + V + + G AI ++ I+
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 517 SRLKPNEITFLGVL-SACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCF 575
L+P+ L +A + G V EA + + H + + ++ + G
Sbjct: 266 --LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNI 321
Query: 576 DDA----EQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVML 631
++A + + P +++ + + + ++ + SP Y +
Sbjct: 322 EEAVRLYRKALEVFPEFAA--AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Query: 632 SNVYATLG 639
N +
Sbjct: 380 GNTLKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 668 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.46 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.01 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.92 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.91 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.85 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.77 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.43 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.43 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.42 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.38 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.23 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.19 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.14 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.11 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.04 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.01 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.99 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.97 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.86 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.83 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.77 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.71 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.67 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.55 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.54 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.54 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.45 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.42 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.35 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.34 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.27 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.23 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.12 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.99 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.98 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.37 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.12 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.67 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.8 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.78 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.37 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.98 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.68 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.35 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.3e-20 Score=183.14 Aligned_cols=377 Identities=12% Similarity=0.041 Sum_probs=267.5
Q ss_pred HHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-Cee
Q 005943 207 LIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVA 285 (668)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 285 (668)
+...+.+.|++++|.+.|+++.+.++. ++.++..+...|...|++++|...|++..+ ..| +..
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~ 68 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK----QNPLLAE 68 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHH
Confidence 345567788888998888887744332 566777888888888888888888888765 334 456
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHH
Q 005943 286 LWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDL 365 (668)
Q Consensus 286 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (668)
+|..+...+.+.|++++|+..+......... +................. .............
T Consensus 69 a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--------------- 130 (388)
T d1w3ba_ 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDM--EGAVQAYVSALQY--------------- 130 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCS--SHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhhhccccccccccccccccccc-cccccccccccccccccc--ccccccccccccc---------------
Confidence 7777888888888888888888887765322 222222222222222221 1111111111111
Q ss_pred HHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHH
Q 005943 366 YARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVH 445 (668)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 445 (668)
..................+....+...+....... +-+...+..+...+...++.+.|...+
T Consensus 131 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 192 (388)
T d1w3ba_ 131 -----------------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHF 192 (388)
T ss_dssp -----------------CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -----------------ccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHH
Confidence 11222233333444445555555555555554432 223445555556666667777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005943 446 AFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN 522 (668)
Q Consensus 446 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 522 (668)
+...+.. +.+...+..+...+...|++++|...+.+... .+...+..+...+.+.|++++|+..|++..+. .|+
T Consensus 193 ~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~ 269 (388)
T d1w3ba_ 193 EKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPH 269 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSS
T ss_pred HHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 6666553 44566777888888889999999888887653 45667788888999999999999999999884 454
Q ss_pred -HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005943 523 -EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLK 599 (668)
Q Consensus 523 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 599 (668)
..++..+..++...|++++|.+.++.... ..+.+...+..+..++.+.|++++|.+.+++. ...| +..++..+..
T Consensus 270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 347 (388)
T d1w3ba_ 270 FPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788889999999999999999998874 34456788889999999999999999999986 4555 5667888999
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
++.+.|++++|...|+++++++|+++.+|..++.+|.+.||
T Consensus 348 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=8.9e-19 Score=173.52 Aligned_cols=356 Identities=13% Similarity=0.077 Sum_probs=271.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005943 253 LVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACIN 331 (668)
Q Consensus 253 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 331 (668)
+...+.+.|++++|.+.++++.+ ..| +...+..+...+.+.|++++|+..|++..+.. |+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~------------- 65 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PL------------- 65 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-------------
Confidence 44557778888899888888865 334 45677777888888888888888888876532 21
Q ss_pred ccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHH
Q 005943 332 LLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYL 408 (668)
Q Consensus 332 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 408 (668)
+..++..+...|.+.|++++|...+....+. +...+..........+....+..
T Consensus 66 -----------------------~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (388)
T d1w3ba_ 66 -----------------------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred -----------------------CHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 2233444566666777777777777665432 33334444444555555555555
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C
Q 005943 409 LFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R 486 (668)
Q Consensus 409 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~ 486 (668)
.............. ............+....+...+....... +.....+..+...+...|++++|...+++..+ |
T Consensus 123 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 200 (388)
T d1w3ba_ 123 AYVSALQYNPDLYC-VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200 (388)
T ss_dssp HHHHHHHHCTTCTH-HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred cccccccccccccc-ccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc
Confidence 55555444433333 33334444555666666666666665554 44567778888999999999999999987653 3
Q ss_pred -CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHH
Q 005943 487 -DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYC 564 (668)
Q Consensus 487 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 564 (668)
+...|..+...+...|++++|+..+++..... +.+...+..+...+.+.|++++|...|++..+ ..| +...+..
T Consensus 201 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 276 (388)
T d1w3ba_ 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCN 276 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHH
T ss_pred ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 56688899999999999999999999998863 44566788888999999999999999999874 355 4788999
Q ss_pred HHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChh
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWD 642 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 642 (668)
+..++...|++++|.+.++.. ..+.+...+..+...+...|++++|+..++++++..|+++.++..++.+|.+.|+++
T Consensus 277 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 356 (388)
T d1w3ba_ 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999887 344577788889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCC
Q 005943 643 SLSKVRKAGKKLGE 656 (668)
Q Consensus 643 ~a~~~~~~~~~~~~ 656 (668)
+|++.+++..+..+
T Consensus 357 ~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 357 EALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999988765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.5e-13 Score=131.57 Aligned_cols=243 Identities=11% Similarity=0.016 Sum_probs=135.9
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005943 392 GLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG 471 (668)
Q Consensus 392 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (668)
.....+.+.|++++|+..|++.++.. +-+...+..+..++...|+++.|...+.+..+.. +-+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34566778888888888888887654 2234555556666666666666666666665543 234445555555566666
Q ss_pred ChHHHHHHhccCCC--CCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 005943 472 EIDDGLALFKFMPE--RDVVS-WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTS 548 (668)
Q Consensus 472 ~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 548 (668)
++++|.+.++.... |+... +....... ...+.......+..+...+.+.+|...+.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 66666555554321 11000 00000000 000000000111112233445556666655
Q ss_pred cccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 549 MKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 549 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
......-.++...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|.+.++++++.+|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 5432122234555666667777777777777777665 2223 4556666667777777777777777777777777777
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++..++.+|.+.|++++|++.+++..+..+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 777777777777777777777777665433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.9e-12 Score=122.35 Aligned_cols=264 Identities=13% Similarity=0.040 Sum_probs=195.3
Q ss_pred HHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 362 LIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
....+.+.|++++|.+.|+++.+. +..+|..+..++...|++++|...|.+..+.. +-+...+..+...+...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 566788999999999999987643 56789999999999999999999999988764 23567788888899999999
Q ss_pred HhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005943 439 RRGKQVHAFCVKRGFEKEDITL-TSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS 517 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 517 (668)
++|...++...... |+.... ....... . ..+.......+..+...+.+.+|...+.+..+.
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGA-G---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhh-h---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999887653 221111 0000000 0 001111111222334456677888888887764
Q ss_pred C-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHH
Q 005943 518 R-LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTI 593 (668)
Q Consensus 518 g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 593 (668)
. -.++...+..+...+...|++++|...+++.... .| +...|..+..+|.+.|++++|.+.+++. ...| +...
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 2 1234567888888999999999999999998743 45 4788899999999999999999999987 3344 5778
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch-----------hHHHHHHHHHhcCChhhHHHH
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSPEDPS-----------KYVMLSNVYATLGMWDSLSKV 647 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~a~~~ 647 (668)
|..+..+|.+.|++++|+..|++++++.|.+.. .+..+..++...|+.+.+...
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999998887654 345567777778887766544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=1.3e-08 Score=97.97 Aligned_cols=257 Identities=11% Similarity=0.003 Sum_probs=109.3
Q ss_pred HHHHHHhcCChHHHHHHHccCCC--C-C-----hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-CCc----HHHHHHH
Q 005943 362 LIDLYARLGNVKSALELFHRLPK--K-D-----VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQ-DVN----QFIISSV 428 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~--~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l 428 (668)
....+...|++++|.+.+++..+ | + ..++..+..++...|++++|...|++...... .++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34455566777777666655321 1 1 12445555666666777777666666544211 011 1223333
Q ss_pred HHHhccccchHhHHHHHHHHHHh----CCCCc---hhHHHHHHHHHHhcCChHHHHHHhccCCC--------CCHhHHHH
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKR----GFEKE---DITLTSLIDMYLKCGEIDDGLALFKFMPE--------RDVVSWTG 493 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~ 493 (668)
...+...|++..+...+...... +.... ...+..+...+...|+++.+...+..... .....+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 34444555555555555443321 11111 11233334444555555555544443221 11223333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC---hhHHHH
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQS----RLKPNE--ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH---LEHYYC 564 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 564 (668)
....+...+++..+...+.+.... +..+.. ..+..+...+...|++++|...++..... ....+ ...+..
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-ccccchHHHHHHHH
Confidence 344444445555555544443321 100110 12233333444455555555555444421 11111 122333
Q ss_pred HHHHhhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM-------PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
+..++...|++++|...++++ +..|+ ...+..+...+.+.|++++|.+.++++++
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455555555555444433 11121 22333344444455555555555555444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=3.5e-09 Score=99.37 Aligned_cols=224 Identities=9% Similarity=0.108 Sum_probs=139.8
Q ss_pred HHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-ChHHHHHHhccCCC---CCHhHHHHHHHHHH
Q 005943 424 IISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG-EIDDGLALFKFMPE---RDVVSWTGIIVGCG 499 (668)
Q Consensus 424 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 499 (668)
.++.+-..+.+.+..++|...++.+++.. |-+...|+....++...| ++++|+..++...+ .+..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 44445555666677777777777777764 445556666666666655 36777777776653 34567777777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCC----
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGC---- 574 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---- 574 (668)
+.|++++|+..++++.+.. +-+...|..+...+...|++++|++.++.+.. ..| +...|+.+..++.+.|.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchh
Confidence 7777777777777777742 22456777777777777777777777777763 345 45566666666555544
Q ss_pred --hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhc--CChhhHHH
Q 005943 575 --FDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED--PSKYVMLSNVYATL--GMWDSLSK 646 (668)
Q Consensus 575 --~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~a~~ 646 (668)
+++|++.+.++ ...| +...|..+...+. ....+++.+.++.+.++.|.. +..+..++..|... +..+.+..
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 45666666555 3334 4555555554443 334566677777777766553 33445566665443 56666666
Q ss_pred HHHHHHh
Q 005943 647 VRKAGKK 653 (668)
Q Consensus 647 ~~~~~~~ 653 (668)
.+++..+
T Consensus 279 ~~~ka~~ 285 (315)
T d2h6fa1 279 ILNKALE 285 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.7e-08 Score=94.58 Aligned_cols=223 Identities=12% Similarity=0.091 Sum_probs=159.9
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc-chHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005943 388 VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA-SLRRGKQVHAFCVKRGFEKEDITLTSLIDM 466 (668)
Q Consensus 388 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 466 (668)
..++-+...+.+.+.+++|+++++++++.. +-+...|.....++...+ ++++|...++...+.. +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 356667777888899999999999998863 334455666666666665 5899999999988876 5577888888999
Q ss_pred HHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCC----
Q 005943 467 YLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGL---- 538 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~---- 538 (668)
+.+.|++++|+..++++.+ .+...|..+...+...|++++|+..++++++. .| +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence 9999999999999998874 36788999999999999999999999999995 45 45577766666555544
Q ss_pred --HHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHh--hCCHHH
Q 005943 539 --VEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM----PFKPDKTIWASMLKACET--HNNTKL 609 (668)
Q Consensus 539 --~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~--~~~~~~ 609 (668)
+++|++.+..... ..| +...|..+...+...| .+++.+.++.. +...+...+..++..+.. .++.+.
T Consensus 200 ~~~~~ai~~~~~al~---~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 200 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhHHhHHHHHHHHH---hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 5788888888773 356 5677777766665544 46666666544 222344455555555432 244444
Q ss_pred HHHHHHHHH
Q 005943 610 VSIIAEQLL 618 (668)
Q Consensus 610 a~~~~~~~~ 618 (668)
+...++++.
T Consensus 276 ~~~~~~ka~ 284 (315)
T d2h6fa1 276 KEDILNKAL 284 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=5.7e-08 Score=90.87 Aligned_cols=186 Identities=10% Similarity=0.095 Sum_probs=130.3
Q ss_pred chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-C-HhHHHHHHHHHHhcCChHHHHHHHH
Q 005943 437 SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-D-VVSWTGIIVGCGQNGRAKEAIAYFQ 512 (668)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~~ 512 (668)
..+++..++++..+...+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4566777777776654455566677777778888888888888887653 2 2 3367777888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHH-HhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC----CC
Q 005943 513 EMIQSRLKPNEITFLGVLS-ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM----PF 587 (668)
Q Consensus 513 ~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 587 (668)
++.+.+ +.+...|..... -+...|+.+.|..+|+.+... .+.+...|..+++.+.+.|+.+.|..+|++. +.
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 887753 223333333332 234467888888888888753 3335677888888888888888888888876 22
Q ss_pred CCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 588 KPD--KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 588 ~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
.|+ ...|...+.-...+|+.+.+..+++++.+..|...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 332 44677777777788888888888888888777653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=5.3e-08 Score=91.08 Aligned_cols=183 Identities=9% Similarity=0.064 Sum_probs=143.8
Q ss_pred ChHHHHHHhccCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 005943 472 EIDDGLALFKFMPE----RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFT 547 (668)
Q Consensus 472 ~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 547 (668)
..++|..+|++..+ .+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677777776442 35567888888899999999999999999885322234578888999999999999999999
Q ss_pred hcccccCCCCChhHHHHHHHHh-hhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 548 SMKPEYGLEPHLEHYYCMVDLL-GQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 548 ~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
++... .+.+...|...+... ...|+.+.|..+|+.+ ..+.+...|...+..+.+.|+++.|..+|+++++..|.+
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 98842 233455565555443 4468999999999988 234467889999999999999999999999999977755
Q ss_pred c----hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 625 P----SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 625 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+ ..|..++..-...|+.+.+..+.+++.+.-+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4 3788888888888999999999999877544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=9e-08 Score=91.78 Aligned_cols=260 Identities=12% Similarity=-0.001 Sum_probs=144.7
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCcH----HHHHHHHHHhccccchHhHHHHHHHHHHhCC--CC---chhHHHHHH
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVNQ----FIISSVLKVCSCLASLRRGKQVHAFCVKRGF--EK---EDITLTSLI 464 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~~l~ 464 (668)
...+...|++++|++++++..+.....+. ..+..+..++...|++++|...++...+... .. ....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 44556677777777777776654322221 2444555666677777777777766554311 11 123344555
Q ss_pred HHHHhcCChHHHHHHhccCCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 005943 465 DMYLKCGEIDDGLALFKFMPE-------R----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL----KPNEITFLGV 529 (668)
Q Consensus 465 ~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~~~~~l 529 (668)
..+...|++..+...+..... + ....+..+...+...|+++.+...+........ .....++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 666667777766666554321 1 112344555666677777777777766655321 1122344555
Q ss_pred HHHhhcCCCHHHHHHHHHhcccccCCC---C--ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-----CHHHHHHHH
Q 005943 530 LSACRHAGLVEEAWTIFTSMKPEYGLE---P--HLEHYYCMVDLLGQAGCFDDAEQLIAEMP-FKP-----DKTIWASML 598 (668)
Q Consensus 530 l~~~~~~g~~~~a~~~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~ 598 (668)
...+...+++..+...+.+........ + ....+..+...+...|++++|...++... ..| ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 555666666666665555443221111 1 12345555666667777777777776651 111 233444556
Q ss_pred HHHHhhCCHHHHHHHHHHHHh------cCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 599 KACETHNNTKLVSIIAEQLLA------TSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.++...|++++|...++++.. ..|....++..++.+|...|++++|.+.+++..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666677777777777776654 2234455666677777777777777777766543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=3.8e-09 Score=96.55 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHcCCCCc---HHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005943 403 NSLAYLLFRDMINSNQDVN---QFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLAL 479 (668)
Q Consensus 403 ~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 479 (668)
.+.++.-+++........+ ..++..+..++.+.|++++|...|+...+.. +-++.++..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555544322111 1233344445555555555555555555543 33445555555555555555555555
Q ss_pred hccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005943 480 FKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQ 516 (668)
Q Consensus 480 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 516 (668)
|++..+ | +..++..+..++...|++++|+..|++..+
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555442 2 233455555555555555555555555555
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=8.5e-08 Score=87.22 Aligned_cols=193 Identities=13% Similarity=0.006 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSAC 533 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 533 (668)
.++..+..+|.+.|++++|+..|++..+ | ++.+|+.+..++.+.|++++|+..|+++.+. .|+ ..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHH
Confidence 3556667778888888888888887653 3 5667888888888888888888888888874 443 44677777778
Q ss_pred hcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH----hhCCH
Q 005943 534 RHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP-FKPDKTIWASMLKACE----THNNT 607 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~----~~~~~ 607 (668)
...|++++|...++...+. .| +......+...+.+.+..+.+..+..... ..++...+.. +..+. ..+..
T Consensus 116 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 8888888888888877743 34 33333334444445554444443333321 1111111211 11111 12233
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 608 KLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 608 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.+...+.......|....++..++.+|...|++++|...+++..+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 3344444444445566666777788888888888888888887776655
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.80 E-value=7e-09 Score=98.69 Aligned_cols=259 Identities=10% Similarity=-0.062 Sum_probs=174.1
Q ss_pred CChHHHHHHHccCCC--C-ChhhHHHHHHH----------HHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHh--cc
Q 005943 370 GNVKSALELFHRLPK--K-DVVAWSGLIMG----------CTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVC--SC 434 (668)
Q Consensus 370 ~~~~~a~~~~~~~~~--~-~~~~~~~l~~~----------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~ 434 (668)
+..++|+++++.+.+ | +...|+..-.. +...|++++|+..+++..... +-+...+..+..++ ..
T Consensus 43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 334677777766553 3 22334332222 233445678888888887654 23444444444444 34
Q ss_pred ccchHhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 005943 435 LASLRRGKQVHAFCVKRGFEKEDITL-TSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAY 510 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 510 (668)
.++.+++...+..+.+.. +++...+ ......+...+.++.|+..++.+.. .+...|+.+...+.+.|++++|...
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 456788888888887774 3344443 3455677788999999999998875 3567888888899999998888766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 005943 511 FQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP 589 (668)
Q Consensus 511 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 589 (668)
+++..+. .|+.. .....+...+..+++...+..... .-+++...+..++..+...|+.++|.+.+.+. ...|
T Consensus 201 ~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 273 (334)
T d1dcea1 201 GRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273 (334)
T ss_dssp CSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 6554442 23222 122233445566677777776653 22344566667777888889999999988877 4445
Q ss_pred -CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 590 -DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 590 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
+...+..+...+.+.|++++|...++++++++|.+...|..|...+.-
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 274 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 455677788889999999999999999999999988888888777653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.77 E-value=9.5e-09 Score=97.75 Aligned_cols=254 Identities=10% Similarity=-0.040 Sum_probs=174.8
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHH-HHH---HHHHh-------ccccchHhHHHHHHHHHHhCCCCchhHHH
Q 005943 393 LIMGCTKHGLNSLAYLLFRDMINSNQDVNQFI-ISS---VLKVC-------SCLASLRRGKQVHAFCVKRGFEKEDITLT 461 (668)
Q Consensus 393 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~---ll~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 461 (668)
++......+..++|++++++..+.. |+..+ |+. ++... ...+.++++...++...+.. +.+...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 3333334444689999999998754 54433 222 22222 23455778888888877664 44556666
Q ss_pred HHHHHHHhcC--ChHHHHHHhccCCC---CCHhHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005943 462 SLIDMYLKCG--EIDDGLALFKFMPE---RDVVSWT-GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH 535 (668)
Q Consensus 462 ~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 535 (668)
.+..++...+ ++++|...+.++.. ++...+. .....+...+.++.|+..++++.+.. +-+...|..+..++..
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 6666665554 47888888887653 3455544 34466777888999999998888753 2345678888888888
Q ss_pred CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHH
Q 005943 536 AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSII 613 (668)
Q Consensus 536 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 613 (668)
.|++++|...++.... ..|+ ...+...+...+..+++...+... ..+++...+..+...+...++.++|...
T Consensus 191 ~~~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 191 LHPQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp HSCCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 8888877665555442 1222 122333455567777777776655 2233444556666777788999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 614 AEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 614 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.+..+.+|.+..++..++.+|.+.|++++|.++++++.+..+
T Consensus 265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999988765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.5e-07 Score=72.99 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=47.0
Q ss_pred HHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 566 VDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
...+.+.|++++|+..|++. . .+.+...|..+..++...|++++|+..++++++.+|.++..|..++.++...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 33444555555555555544 1 122344455555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCC
Q 005943 644 LSKVRKAGKKLGE 656 (668)
Q Consensus 644 a~~~~~~~~~~~~ 656 (668)
|+..+++..+..+
T Consensus 90 A~~~~~~a~~~~p 102 (117)
T d1elwa_ 90 AKRTYEEGLKHEA 102 (117)
T ss_dssp HHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhCC
Confidence 5555555554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.58 E-value=1.6e-07 Score=81.43 Aligned_cols=105 Identities=7% Similarity=-0.111 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005943 521 PNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASM 597 (668)
Q Consensus 521 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 597 (668)
|+...+......+.+.|++++|+..|++.... .| +...|..+..+|.+.|++++|+..|+++ ...| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 44444445555555555555555555555421 23 3444555555555555555555555544 3333 34445555
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPEDPSKY 628 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 628 (668)
..++.+.|++++|...|++++++.|++...+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 5555555555555555555555544443333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=3.4e-07 Score=70.89 Aligned_cols=105 Identities=14% Similarity=0.047 Sum_probs=88.2
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhC
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHN 605 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~ 605 (668)
-...+.+.|++++|+..|++.... .| +...|..+..+|.+.|++++|+..+++. . .+.+...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 355677889999999999988843 55 5778889999999999999999999887 2 3457788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 606 NTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
++++|+..++++++.+|+++.++..+..+..
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999998888876643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.2e-06 Score=74.63 Aligned_cols=81 Identities=17% Similarity=0.069 Sum_probs=37.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCCh
Q 005943 497 GCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCF 575 (668)
Q Consensus 497 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 575 (668)
.+...|+++.|++.|+++ .+|+...+..+..++...|++++|++.|++..+ +.| +...|..+..+|.+.|++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHHHHhhccH
Confidence 334445555555554432 133444444445555555555555555555442 233 244444445555555555
Q ss_pred HHHHHHHHh
Q 005943 576 DDAEQLIAE 584 (668)
Q Consensus 576 ~~A~~~~~~ 584 (668)
++|++.|++
T Consensus 87 ~~A~~~~~k 95 (192)
T d1hh8a_ 87 DLAIKDLKE 95 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.48 E-value=3.1e-07 Score=70.43 Aligned_cols=90 Identities=11% Similarity=0.006 Sum_probs=81.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
...+...+.+.|++++|...|++. ...| +...|..+..++.+.|++++|+..++++++++|.++.++..++.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 344677888999999999999988 3345 68889999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHH
Q 005943 640 MWDSLSKVRKAG 651 (668)
Q Consensus 640 ~~~~a~~~~~~~ 651 (668)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=9.9e-07 Score=72.76 Aligned_cols=117 Identities=9% Similarity=-0.009 Sum_probs=93.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETH 604 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 604 (668)
.....|.+.|++++|...|++..+ +.| +...|..+..+|...|++++|.+.|+++ ...| +...|..+..++...
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 345567788999999999888884 355 5778888889999999999999999887 3334 667888899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH--HhcCChhhHHHH
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVY--ATLGMWDSLSKV 647 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 647 (668)
|++++|...++++..+.|.++.++..+..+. ...+.+++|...
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998887776654 444556667654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=7.9e-07 Score=73.37 Aligned_cols=96 Identities=8% Similarity=-0.003 Sum_probs=85.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
+......|.+.|++++|+..|+++ .. +.+...|..+...+...|++++|...|+++++.+|.+..+|..++.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 444567888999999999999988 33 3467788899999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCCC
Q 005943 640 MWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 640 ~~~~a~~~~~~~~~~~~~ 657 (668)
++++|...+++..+..+.
T Consensus 93 ~~~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPH 110 (159)
T ss_dssp CHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 999999999999887763
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1e-06 Score=75.18 Aligned_cols=89 Identities=11% Similarity=-0.008 Sum_probs=81.0
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLS 645 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 645 (668)
...+...|++++|++.|.++. +|+..+|..+..++...|++++|++.|+++++++|.++.+|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 456678899999999999874 5788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 005943 646 KVRKAGKKLG 655 (668)
Q Consensus 646 ~~~~~~~~~~ 655 (668)
+.+++..+..
T Consensus 91 ~~~~kAl~~~ 100 (192)
T d1hh8a_ 91 KDLKEALIQL 100 (192)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9999887643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=3.2e-07 Score=79.55 Aligned_cols=96 Identities=9% Similarity=-0.012 Sum_probs=80.4
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHH
Q 005943 486 RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYC 564 (668)
Q Consensus 486 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 564 (668)
|+...+......|.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|+..|++.. .+.|+ ...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 455666777888999999999999999988853 3456678888889999999999999999988 56774 778888
Q ss_pred HHHHhhhcCChHHHHHHHHhC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+..+|.+.|++++|+..|+++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999876
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=1e-06 Score=81.21 Aligned_cols=187 Identities=9% Similarity=-0.036 Sum_probs=100.2
Q ss_pred HHHHHHhcCChHHHHHHhccCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHH
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE-----RD----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR---LKPN--EITFLG 528 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ 528 (668)
....|...+++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|++.+++..+.. -.+. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 34556666666666666665432 11 2356666777777777777777777655421 0111 224455
Q ss_pred HHHHhh-cCCCHHHHHHHHHhccccc---CCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-------CH-HHH
Q 005943 529 VLSACR-HAGLVEEAWTIFTSMKPEY---GLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEMP-FKP-------DK-TIW 594 (668)
Q Consensus 529 ll~~~~-~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~-~~~ 594 (668)
+...|. ..|++++|.+.+++...-. +..+. ..++..+...|.+.|++++|.+.++++. ..| .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 555553 4577777777776654211 11111 3456667777777777777777777651 111 11 122
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch-----hHHHHHHHHHh--cCChhhHHHHHH
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPEDPS-----KYVMLSNVYAT--LGMWDSLSKVRK 649 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~ 649 (668)
...+..+...|+++.|...++++.+.+|..+. .+..++.++.. .+.+++|+..++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33344455667777777777777777664322 23444444443 234556655554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=7.3e-06 Score=68.07 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHh
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLL 569 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 569 (668)
.+......+.+.|++++|+..|++.++. -|.. .+....-......+. ..+|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYE------------SSFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhc------------cccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 3444556677778888888887777653 1100 000001111111111 23577788899
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhH
Q 005943 570 GQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSL 644 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 644 (668)
.+.|++++|+..++.. ...| +...|..+..++...|++++|...|+++++++|+++.+...+..+....+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 3344 7888999999999999999999999999999999999999998887766655544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=4.9e-06 Score=76.44 Aligned_cols=174 Identities=7% Similarity=-0.019 Sum_probs=129.4
Q ss_pred ChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHH
Q 005943 472 EIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS----RLKPN-EITFLGVLSACRHAGLVEEAWTIF 546 (668)
Q Consensus 472 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 546 (668)
++++|.++ |......|...|++++|.+.|.+..+. +-+++ ..+|..+..+|.+.|++++|.+.+
T Consensus 32 ~~~~Aa~~-----------y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADL-----------CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHH-----------HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHH-----------HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 46677665 445678899999999999999998763 21222 247888999999999999999999
Q ss_pred HhcccccCCCCC----hhHHHHHHHHhhh-cCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhhCCHHHHHHH
Q 005943 547 TSMKPEYGLEPH----LEHYYCMVDLLGQ-AGCFDDAEQLIAEMP-------FKP-DKTIWASMLKACETHNNTKLVSII 613 (668)
Q Consensus 547 ~~~~~~~~~~p~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~-------~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 613 (668)
++...-..-..+ ..++..+...|.. .|++++|.+.+++.. ..+ -..++..+...+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 876532111111 4556677777754 699999999998761 111 134577788889999999999999
Q ss_pred HHHHHhcCCCCch-------hHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 614 AEQLLATSPEDPS-------KYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 614 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
|+++....|.++. .+...+..+...|+++.|.+.+++..+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999998777642 345677778899999999999998877655
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=6.6e-06 Score=68.32 Aligned_cols=67 Identities=3% Similarity=-0.108 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKK 658 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 658 (668)
.+|..+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|...++...+..+.+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n 129 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 129 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 3567788889999999999999999999999999999999999999999999999999998887643
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=3e-06 Score=65.53 Aligned_cols=105 Identities=12% Similarity=0.014 Sum_probs=74.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGC---FDDAEQLIAEM-PFKPDK---TIWASMLK 599 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~ 599 (668)
.++..+...+++++|.+.|++... ..| +..++..+..++.+.++ +++|+++++++ ...|+. .+|..+..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 455666677777788888777773 244 46777777777766544 44577777776 333433 35677888
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+|.+.|++++|++.|+++++++|++..+......+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 888999999999999999999999887766655443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.8e-06 Score=66.85 Aligned_cols=94 Identities=10% Similarity=-0.014 Sum_probs=79.6
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhh---CCHHHHHHHHHHHHhcCCCC--chhHHHHHHHH
Q 005943 563 YCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETH---NNTKLVSIIAEQLLATSPED--PSKYVMLSNVY 635 (668)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 635 (668)
..+++.+...+++++|.+.|++. . .+.+..++..+..++.+. +++++|+.+++++++.+|.+ ..++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46778888999999999999988 3 345778888899888764 45567999999999988765 34889999999
Q ss_pred HhcCChhhHHHHHHHHHhcCC
Q 005943 636 ATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+.|++++|+++++++.+..+
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhhHHHHHHHHHHHHhCc
Confidence 999999999999999998776
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.11 E-value=2.3e-05 Score=64.79 Aligned_cols=95 Identities=7% Similarity=-0.086 Sum_probs=78.2
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
.+|..+..+|.+.|++++|+..++.. . .+.+...|..+..++...|++++|...|+++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35667888999999999999999887 3 345788899999999999999999999999999999999999999888877
Q ss_pred cCChh-hHHHHHHHHHhc
Q 005943 638 LGMWD-SLSKVRKAGKKL 654 (668)
Q Consensus 638 ~g~~~-~a~~~~~~~~~~ 654 (668)
.+... ...+.+..|.++
T Consensus 145 ~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFKK 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhh
Confidence 76554 455666666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.04 E-value=0.00042 Score=62.09 Aligned_cols=149 Identities=12% Similarity=-0.022 Sum_probs=95.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cCC
Q 005943 501 NGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA--CRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AGC 574 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 574 (668)
.++.+.|...++...+.|..+.. ........ .........+...+..... ..+...+..|...|.. ..+
T Consensus 87 ~~~~~~a~~~~~~a~~~g~~~a~-~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~ 161 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKYAEGC-ASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKD 161 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCC
T ss_pred chhhHHHHHHHhhhhhhhhhhHH-HhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccc
Confidence 34667777777777766522211 11111111 2234455666666665542 2445566666666664 345
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChhhHHH
Q 005943 575 FDDAEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT----LGMWDSLSK 646 (668)
Q Consensus 575 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~ 646 (668)
...+...++......+......+...+.. ..+++.|+..|+++.+.. ++..+..|+.+|.. ..++++|.+
T Consensus 162 ~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~ 239 (265)
T d1ouva_ 162 LKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIE 239 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred cccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence 66677777666333466666666655554 568999999999998864 46688889998876 448999999
Q ss_pred HHHHHHhcCC
Q 005943 647 VRKAGKKLGE 656 (668)
Q Consensus 647 ~~~~~~~~~~ 656 (668)
++++..+.|.
T Consensus 240 ~~~kAa~~g~ 249 (265)
T d1ouva_ 240 NFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHCcC
Confidence 9999988775
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1e-05 Score=63.41 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=70.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch-------hHHHHH
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS-------KYVMLS 632 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 632 (668)
+..+...+.+.|++++|++.|++. ... .+...+..+..+|.+.|+++.|+..++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445667788888888888888776 233 35777888888888889999999999998888777655 445566
Q ss_pred HHHHhcCChhhHHHHHHHHHhc
Q 005943 633 NVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 633 ~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
..+...+++++|++.++.....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 6777778888888888776543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.01 E-value=2.7e-05 Score=63.14 Aligned_cols=77 Identities=4% Similarity=-0.110 Sum_probs=57.4
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
.+|..+..+|.+.|++++|++.++++ ...| +...|..+..++...|++++|...|+++++++|++..+...+..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45666777788888888888887776 3333 66778888888888888888888888888888888777766665544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.99 E-value=3.4e-05 Score=62.51 Aligned_cols=66 Identities=8% Similarity=0.039 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
.+|..+..++.+.|++++|++.++++++.+|.+..+|..++.+|...|++++|...+++..+..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 467778888999999999999999999999999999999999999999999999999999988763
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=0.0033 Score=57.28 Aligned_cols=131 Identities=14% Similarity=0.069 Sum_probs=77.7
Q ss_pred HHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCCh
Q 005943 6 IVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRP 85 (668)
Q Consensus 6 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 85 (668)
...+..-|.+.|.++.|..++..+. -|..++..+.+.++++.|.+++.+. .+..+|..+..++......
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~ 85 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEF 85 (336)
T ss_dssp ------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHH
Confidence 3455666777777888887777533 3777777778888888877777644 3555777777777776555
Q ss_pred hhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcC
Q 005943 86 NWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCG 154 (668)
Q Consensus 86 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 154 (668)
.-| .+...+.. .+......++..+-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 86 ~la-----~i~~~~~~-~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 86 RLA-----QMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHH-----HHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHH-----HHHHHHhh-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 433 22223323 44445566777788888888888888876532 2445566777777777654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=2.7e-05 Score=64.57 Aligned_cols=132 Identities=12% Similarity=0.041 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHh
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLL 569 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 569 (668)
+......+...|++++|+..|++.++. .+.. ......... . ...| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~----------~~~~~~~~~------~----~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADG------A----KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHH------G----GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh----------hhhhhhHHH------H----HhChhhHHHHHHHHHHH
Confidence 445566677788888888888776641 0000 000000000 0 1122 355677788889
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhH
Q 005943 570 GQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSL 644 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 644 (668)
.+.|++++|+..++++ ...| +...|..+..++.+.|+++.|+..|+++++++|+++.+...+..+........++
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877 4444 6778888889999999999999999999999999988888888777655544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=7.9e-07 Score=88.78 Aligned_cols=116 Identities=6% Similarity=-0.071 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhhCCHHHHHHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP-FKPDKTIWASMLKACETHNNTKLVSIIA 614 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 614 (668)
+.++.|+..++... ++.| +...+..+...+.+.|+.++|...++..- ..| ...+..+...+...|++++|...|
T Consensus 100 ~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC----------------------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 34444444444333 3333 34455556666666666666655544331 111 234455555666666677777777
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 615 EQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 615 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+++.++.|++..+|..|+.++...|+..+|+..+.+......
T Consensus 176 ~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~ 217 (497)
T d1ya0a1 176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp HHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 777777777666777777777667777766666666654443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.86 E-value=9e-05 Score=61.10 Aligned_cols=64 Identities=3% Similarity=-0.045 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|+..++++.+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P 129 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4666777889999999999999999999999999999999999999999999999999988766
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=2.9e-05 Score=64.32 Aligned_cols=68 Identities=7% Similarity=-0.017 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
....|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|++.+++..+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~ 143 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 143 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34467778888999999999999999999999999999999999999999999999999999987763
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.77 E-value=4.6e-05 Score=57.78 Aligned_cols=86 Identities=12% Similarity=0.008 Sum_probs=55.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhh
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQ 571 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 571 (668)
+...+.+.|++++|+..|++.++. .| +...|..+..++.+.|++++|+..+++..+ +.| +...+..+..+|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHH
Confidence 445566667777777777776664 34 355666666677777777777777776663 244 35666666667777
Q ss_pred cCChHHHHHHHHh
Q 005943 572 AGCFDDAEQLIAE 584 (668)
Q Consensus 572 ~g~~~~A~~~~~~ 584 (668)
.|++++|.+.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7777777666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=0.00015 Score=60.15 Aligned_cols=113 Identities=13% Similarity=-0.044 Sum_probs=79.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHHHhhCC
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCF-DDAEQLIAEMPFKPDKTIWASMLKACETHNN 606 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 606 (668)
.........|++++|.+.|.+... +.+....- .+ ..+.+ .....-++. .....+..+...+.+.|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~---l~rG~~l~-----~~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALR---EWRGPVLD-----DL-RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT---TCCSSTTG-----GG-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---hCcccccc-----cC-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 334566778888888888888773 22221100 00 00111 111111111 123467778888999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 607 TKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 607 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
+++|...++++++.+|.+...|..++.+|...|++++|.+.|+++.+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999854
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.67 E-value=0.019 Score=52.04 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=29.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCC
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCN 261 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g 261 (668)
++.....++..|-..|.+++...+++.....+.. +...++.++..|++.+
T Consensus 98 ~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~------------~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 98 HADELEELINYYQDRGYFEELITMLEAALGLERA------------HMGMFTELAILYSKFK 147 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC------------CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCcc------------chHHHHHHHHHHHHhC
Confidence 4444456677777777777777777765432221 3455666666666653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00022 Score=51.87 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=58.5
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEM----P----FKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
..+..+...+.+.|++++|...|++. + ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 33445677777778877777777655 1 1122 5578889999999999999999999999999999998888
Q ss_pred HHHHH
Q 005943 631 LSNVY 635 (668)
Q Consensus 631 l~~~~ 635 (668)
+....
T Consensus 86 l~~~~ 90 (95)
T d1tjca_ 86 LKYFE 90 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.54 E-value=0.015 Score=51.47 Aligned_cols=115 Identities=9% Similarity=-0.062 Sum_probs=67.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cC
Q 005943 502 GRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH----AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AG 573 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 573 (668)
.....+...+...... .+...+..+...+.. ..+...+..+++..... .+......+...|.. ..
T Consensus 124 ~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 124 RDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred chhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCccccc
Confidence 3455566666655553 344445555555543 44566666666665532 244455555555544 45
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCC
Q 005943 574 CFDDAEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 574 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 623 (668)
++++|...|++....-++..+..|...|.+ ..+.++|.+.|+++.+..+.
T Consensus 197 d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 197 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred chhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 788888888777323355566666666654 34788888888888776544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00012 Score=56.97 Aligned_cols=57 Identities=5% Similarity=-0.041 Sum_probs=32.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 493 GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 493 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
.+...+.+.|++++|+..|++.++.. +.+...+..+..+|.+.|++++|+..++++.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 34555556666666666666666542 2234455555666666666666666665554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.45 E-value=0.00025 Score=57.44 Aligned_cols=88 Identities=15% Similarity=-0.052 Sum_probs=61.8
Q ss_pred HHhhhcCChHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC---------
Q 005943 567 DLLGQAGCFDDAEQLIAEM----PFKPD----------KTIWASMLKACETHNNTKLVSIIAEQLLATSPE--------- 623 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--------- 623 (668)
..+.+.|++++|++.|++. +..|+ ...|+.+..++...|++++|...+++++++.|.
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444556666666666554 11121 346777888888888998888888888874321
Q ss_pred --CchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 624 --DPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 624 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
...++..++.+|...|++++|.+.+++..+.
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235778899999999999999999987754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.42 E-value=0.00013 Score=58.26 Aligned_cols=125 Identities=15% Similarity=0.166 Sum_probs=68.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCC----------HHHHHHHHHhcccccCCCC-ChhHHHHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGL----------VEEAWTIFTSMKPEYGLEP-HLEHYYCM 565 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l 565 (668)
|-+.+.+++|+..|+...+. .| +...+..+..++...++ +++|+..|++.. .+.| +...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl---~l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---HhcchhhHHHhhH
Confidence 34455677777777777764 34 34455556555554332 234444444444 2233 23344444
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLS 645 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 645 (668)
..+|...|+.. ++... ..++++.|.+.|+++++++|++...+..|... .+|.
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAP 133 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHH
Confidence 44443332210 01000 12346889999999999999998777666654 4666
Q ss_pred HHHHHHHhcC
Q 005943 646 KVRKAGKKLG 655 (668)
Q Consensus 646 ~~~~~~~~~~ 655 (668)
+++.++.+.|
T Consensus 134 ~~~~e~~k~~ 143 (145)
T d1zu2a1 134 QLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHHh
Confidence 6666666655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.40 E-value=9e-05 Score=59.16 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=63.1
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 570 GQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACET----------HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
.+.+.+++|.+.++.. ...| +...+..+..++.. .+.+++|+..|+++++++|+++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445566666666665 2223 44455555555442 3456889999999999999999999999999988
Q ss_pred cCC-----------hhhHHHHHHHHHhcCC
Q 005943 638 LGM-----------WDSLSKVRKAGKKLGE 656 (668)
Q Consensus 638 ~g~-----------~~~a~~~~~~~~~~~~ 656 (668)
.|+ +++|.+.+++..+..+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 764 6888888888877665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.35 E-value=0.00018 Score=63.87 Aligned_cols=126 Identities=17% Similarity=0.024 Sum_probs=77.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHH
Q 005943 499 GQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 577 (668)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+ ..|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 45678888888888887752 33456777788888888888888888888773 3554 4444455555544444444
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 005943 578 AEQLIAEM--PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKY 628 (668)
Q Consensus 578 A~~~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 628 (668)
+..-.... ...|+ ...+......+.+.|+.++|.+.++++.+..|..+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 33322211 11232 22333344456677888888888888888777766544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.34 E-value=0.00051 Score=56.74 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=87.8
Q ss_pred HHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChh
Q 005943 7 VEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPN 86 (668)
Q Consensus 7 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 86 (668)
..........|++++|.+.|.+.++.. +.... ........+...-+.+.+.....+..+..++.+.|+++
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 334456677889999998888888652 11110 00011111222222222334557888999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHH-----cCCCCCchH
Q 005943 87 WAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITR-----EKLEYDTVL 142 (668)
Q Consensus 87 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 142 (668)
+|+..++++.+.. + -+...|..++.++...|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 85 ~Al~~~~~al~~~-P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 85 AVIAELEALTFEH-P-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHS-T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHhC-C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999987 3 4678899999999999999999999999754 588888755
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.27 E-value=0.00012 Score=65.07 Aligned_cols=121 Identities=13% Similarity=0.146 Sum_probs=87.0
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHH
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTKL 609 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 609 (668)
..+.|++++|+..+++..+. .| +...+..+..+|+..|++++|.+.++.. ...|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45689999999999999853 55 6899999999999999999999999988 45564 4445445444444444333
Q ss_pred HHHHHHHHHh-cCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 610 VSIIAEQLLA-TSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 610 a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+......... ..|++...+...+..+...|+.++|.+.++.+.+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 3222211111 2344455566677889999999999999999988766
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00042 Score=50.31 Aligned_cols=66 Identities=20% Similarity=0.007 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLATSPED-------PSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
..+-.+...+.+.|+++.|+..++++++..|.+ ..++..++.+|.+.|++++|+..++++.+..+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 345567788899999999999999999865443 457899999999999999999999999988773
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.12 E-value=0.022 Score=41.60 Aligned_cols=141 Identities=11% Similarity=0.082 Sum_probs=106.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
+...|..++..+++.+.... .+..-|+.++--....-+-+...++++.+-+-+.+.| +++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 45678889999999888873 3566677777766667777777888877765444433 344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 578 AEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 578 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
...-+-.+. .+...++..+..+...|+-+.-.++++.+.+....+|..+..++.+|.+.|+..++.+++.+.-+.|+|
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444444443 244556777888889999999999999988888788999999999999999999999999999999874
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.17 Score=48.40 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=35.3
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 005943 362 LIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSN 417 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 417 (668)
.+..+.+.+++......+...+ .+...-.....+....|+...|...+..+-..|
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 4556677788877776654322 244444566677778888888887777665443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.98 E-value=0.0022 Score=51.59 Aligned_cols=63 Identities=13% Similarity=0.021 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM--------PFKPD-----KTIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
.|+.+..+|.+.|++++|.+.+++. ...++ ...+..+..+|...|++++|+..|++++++.|.
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4555566666666666665555543 11121 224566777788888999999999888886543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.0017 Score=63.88 Aligned_cols=114 Identities=9% Similarity=-0.093 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPERDV-VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSAC 533 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 533 (668)
+...+..+...+.+.|+.+.|...+.....++. .++..+...+...|++++|+..|++..+. .|+ ..+|+.+...+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILA 196 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 444556666777778888888777665544332 35667788888889999999999988884 554 46888888888
Q ss_pred hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcC
Q 005943 534 RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAG 573 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 573 (668)
...|+..+|...|.+... -.+|-...+..|...+.+..
T Consensus 197 ~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhh
Confidence 889999999988888873 23455677777777776544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.12 E-value=0.041 Score=40.73 Aligned_cols=72 Identities=4% Similarity=-0.001 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHhhhcCC---hHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 005943 557 PHLEHYYCMVDLLGQAGC---FDDAEQLIAEM-PFKP-DK-TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKY 628 (668)
Q Consensus 557 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 628 (668)
|+..+-..+..++.+..+ .++++.++++. ...| +. ..+..+..+|.+.|++++|...++++++.+|.+..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 445555556666665543 44666666665 2223 22 3455566667777777777777777777777765543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.67 E-value=0.15 Score=38.78 Aligned_cols=50 Identities=10% Similarity=0.057 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHHhcCC
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT----LGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 656 (668)
.+.++|.++|+++.+.. ++.....|+..|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 35667777777766543 34456666666665 3567777777777766654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.80 E-value=1.2 Score=32.35 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
+...+..+.+.|+-+.-.++++++.+.+ +|++.....+..+|.+.|+..++.+++.+.-++
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3445556666677666667766665543 666666666667777777777777766666543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.78 E-value=0.46 Score=34.91 Aligned_cols=68 Identities=9% Similarity=-0.037 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHhh---CCHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 589 PDKTIWASMLKACETH---NNTKLVSIIAEQLLATSPEDP-SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 589 p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
|...+--....++.++ .+.++++.+++++.+.+|.+. ..+..|+.+|.+.|++++|.++++.+.+..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4555555566666654 456678888888888887664 6778888889999999999999988887765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.37 E-value=0.87 Score=34.24 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCCHHHHHHHHHhcc
Q 005943 503 RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH----AGLVEEAWTIFTSMK 550 (668)
Q Consensus 503 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 550 (668)
+.++|+++|++..+.| ++.....|...|.. ..+.++|.++|++..
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 4556666666665554 22222233333322 345666666666554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.98 E-value=7.6 Score=36.17 Aligned_cols=323 Identities=12% Similarity=0.029 Sum_probs=176.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHh
Q 005943 289 SMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYAR 368 (668)
Q Consensus 289 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (668)
....+....|+...|...+..+-..|.... +....++..+.+.|.. +...+-.-+.....
T Consensus 107 ~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p-------------------~~c~~l~~~~~~~~~l-t~~~~~~R~~~~l~ 166 (450)
T d1qsaa1 107 NYYYAKWNTGQSEEAWQGAKELWLTGKSQP-------------------NACDKLFSVWRASGKQ-DPLAYLERIRLAMK 166 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHSCSSCCC-------------------THHHHHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCc-------------------hHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 445566667777777777666655542211 3334444444444432 33333335556667
Q ss_pred cCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc--ccchHhHHHHHH
Q 005943 369 LGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSC--LASLRRGKQVHA 446 (668)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~ 446 (668)
.|+...|..+...+...........+....+ ...+..... . ..++......+..++.+ ..+.+.+..++.
T Consensus 167 ~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~ 238 (450)
T d1qsaa1 167 AGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVAFASVARQDAENARLMIP 238 (450)
T ss_dssp TTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHh---c--CCCChhhhHHHHHHHHHHhccChhHHHHHHH
Confidence 7899999998887765544444444444332 222222211 1 12333333333333333 246677777777
Q ss_pred HHHHhCCCCchhHH---HHHHHHHHhcCChHHHHHHhccCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005943 447 FCVKRGFEKEDITL---TSLIDMYLKCGEIDDGLALFKFMP--ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP 521 (668)
Q Consensus 447 ~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 521 (668)
.............. ..+.......+..+.+...+.... ..+.......+......+++..+...+..|.... ..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~ 317 (450)
T d1qsaa1 239 SLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KE 317 (450)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GG
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-cc
Confidence 76654322221111 112222234455666666554433 1333333445555667789999988888775421 12
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHH----HHHHH
Q 005943 522 NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKT----IWASM 597 (668)
Q Consensus 522 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~----~~~~l 597 (668)
...-.--+..++...|+.+.|..+|..+.. .++ -|..|... +.|..-.. . ....+..++.. .--.-
T Consensus 318 ~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~~~-~-~~~~~~~~~~~~~~~~~~~r 387 (450)
T d1qsaa1 318 KDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEYEL-K-IDKAPQNVDSALTQGPEMAR 387 (450)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCCCC-C-CCCCCSCCCCHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCCCC-C-cCCCCccHHHhhhcChHHHH
Confidence 233344566788899999999999998862 233 34443322 22221000 0 00011111111 11123
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+..+...|....|...+..+.... ++.-...++.+..+.|.++.|+.......
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 445778899999999998887643 45677888999999999999998876653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.68 E-value=1.4 Score=30.24 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 503 RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 503 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
+.-++.+-+..+....+.|++....+.+++|.+.+++..|.++++-.+.+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 34455666666667778899999999999999999999999999888754 3345566666553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.35 E-value=4.1 Score=27.89 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=42.4
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 577 DAEQLIAEM---PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 577 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
++.+-++.+ ..-|++....+.+.||.|-+|+..|.++++.+......+...|..+.
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344444433 46799999999999999999999999999999886544455666554
|