Citrus Sinensis ID: 005946
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 668 | 2.2.26 [Sep-21-2011] | |||||||
| A5GI62 | 175 | Ribosome maturation facto | yes | no | 0.255 | 0.977 | 0.415 | 2e-33 | |
| B7K5W1 | 186 | Ribosome maturation facto | yes | no | 0.269 | 0.967 | 0.410 | 5e-32 | |
| B2J3X9 | 235 | Ribosome maturation facto | yes | no | 0.285 | 0.812 | 0.369 | 1e-31 | |
| Q8YTB1 | 246 | Probable 16S rRNA-process | yes | no | 0.278 | 0.756 | 0.381 | 2e-31 | |
| Q3ME71 | 233 | Probable 16S rRNA-process | yes | no | 0.269 | 0.772 | 0.392 | 6e-31 | |
| Q7V4K0 | 176 | Ribosome maturation facto | yes | no | 0.255 | 0.971 | 0.384 | 9e-31 | |
| A2CCX2 | 176 | Ribosome maturation facto | yes | no | 0.255 | 0.971 | 0.379 | 1e-30 | |
| Q10VX5 | 208 | Ribosome maturation facto | yes | no | 0.285 | 0.918 | 0.371 | 3e-30 | |
| A5GQ79 | 175 | Ribosome maturation facto | yes | no | 0.255 | 0.977 | 0.386 | 4e-30 | |
| B0JU07 | 192 | Ribosome maturation facto | yes | no | 0.281 | 0.979 | 0.375 | 5e-29 |
| >sp|A5GI62|RIMM_SYNPW Ribosome maturation factor RimM OS=Synechococcus sp. (strain WH7803) GN=rimM PE=3 SV=1 | Back alignment and function desciption |
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Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats.
Identities = 81/195 (41%), Positives = 119/195 (61%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG V +V GL+GE+ V P++DFPE RFT PG+RWL+ + + RE++L GR+
Sbjct: 5 DWLPVGKVVAVQGLKGELRVNPASDFPE-RFTEPGSRWLKAR---GQAPREIELTSGRQL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ F G+++ + A LVG TL+ DRPEL +GEF+ DLVG+ + G+
Sbjct: 61 PGKSVFVVRFAGVESRDAAEALVGQTLMVPADDRPELAEGEFHLLDLVGLEARLSADGDA 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV ++ SG NDLL V+E + GR + IPFVE IVP V +
Sbjct: 121 IGTVKDLI-SGGNDLL---------VLERPD----------GRTLMIPFVEAIVPDVHLE 160
Query: 256 GREMQITPPKGLLEL 270
+++TPP GLLEL
Sbjct: 161 QGWLRLTPPPGLLEL 175
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An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes. Synechococcus sp. (strain WH7803) (taxid: 32051) |
| >sp|B7K5W1|RIMM_CYAP8 Ribosome maturation factor RimM OS=Cyanothece sp. (strain PCC 8801) GN=rimM PE=3 SV=1 | Back alignment and function description |
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| >sp|B2J3X9|RIMM_NOSP7 Ribosome maturation factor RimM OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rimM PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8YTB1|RIMM_NOSS1 Probable 16S rRNA-processing protein RimM OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rimM PE=3 SV=1 | Back alignment and function description |
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| >sp|Q3ME71|RIMM_ANAVT Probable 16S rRNA-processing protein RimM OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rimM PE=3 SV=1 | Back alignment and function description |
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| >sp|Q7V4K0|RIMM_PROMM Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain MIT 9313) GN=rimM PE=3 SV=2 | Back alignment and function description |
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| >sp|A2CCX2|RIMM_PROM3 Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain MIT 9303) GN=rimM PE=3 SV=2 | Back alignment and function description |
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| >sp|Q10VX5|RIMM_TRIEI Ribosome maturation factor RimM OS=Trichodesmium erythraeum (strain IMS101) GN=rimM PE=3 SV=1 | Back alignment and function description |
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| >sp|A5GQ79|RIMM_SYNR3 Ribosome maturation factor RimM OS=Synechococcus sp. (strain RCC307) GN=rimM PE=3 SV=1 | Back alignment and function description |
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| >sp|B0JU07|RIMM_MICAN Ribosome maturation factor RimM OS=Microcystis aeruginosa (strain NIES-843) GN=rimM PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 668 | ||||||
| 225463376 | 665 | PREDICTED: uncharacterized protein LOC10 | 0.958 | 0.962 | 0.609 | 0.0 | |
| 224116700 | 673 | predicted protein [Populus trichocarpa] | 0.913 | 0.906 | 0.626 | 0.0 | |
| 255557441 | 631 | conserved hypothetical protein [Ricinus | 0.907 | 0.960 | 0.605 | 0.0 | |
| 357519207 | 667 | Ribosome maturation factor rimM [Medicag | 0.973 | 0.974 | 0.539 | 0.0 | |
| 84468326 | 669 | hypothetical protein [Trifolium pratense | 0.883 | 0.881 | 0.577 | 0.0 | |
| 42568351 | 653 | RimM-like 16S rRNA processing protein [A | 0.952 | 0.973 | 0.502 | 0.0 | |
| 297794617 | 654 | 16S rRNA processing protein RimM family | 0.964 | 0.984 | 0.494 | 1e-170 | |
| 125553343 | 644 | hypothetical protein OsI_21009 [Oryza sa | 0.848 | 0.880 | 0.436 | 1e-139 | |
| 222632582 | 644 | hypothetical protein OsJ_19570 [Oryza sa | 0.848 | 0.880 | 0.433 | 1e-139 | |
| 308081839 | 661 | hypothetical protein [Zea mays] gi|23801 | 0.847 | 0.856 | 0.426 | 1e-135 |
| >gi|225463376|ref|XP_002271571.1| PREDICTED: uncharacterized protein LOC100251997 [Vitis vinifera] gi|297740629|emb|CBI30811.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/645 (60%), Positives = 490/645 (75%), Gaps = 5/645 (0%)
Query: 24 LSLPLQHQLPRSLPASFGVQLPSTSPQIYRHAVSLLHSSATQEIVETSASGLDFVDVGYV 83
+LP++ + R + AS V+LP T + YRH +S LHS+AT+E++ETS +FV+VGY+
Sbjct: 26 FALPVRGRPTRPVVAS--VRLPLTRLRNYRHTLSPLHSTATEEVLETSKVESEFVEVGYI 83
Query: 84 YSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWIL 143
SVHGLQGEI VKP+TDFPELRF PG RWLRQQ G+ETIREV+L++GR HPGQK+WIL
Sbjct: 84 SSVHGLQGEIRVKPNTDFPELRFAEPGIRWLRQQFSGKETIREVELVEGRGHPGQKTWIL 143
Query: 144 TFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVF 203
F GIDTVE+A+ LVGS+LL RE DRPELE+GEFY+RDL+GMRV +KETGE VGTVVNVF
Sbjct: 144 KFGGIDTVEEAKQLVGSSLLVREDDRPELEEGEFYSRDLLGMRVTLKETGEPVGTVVNVF 203
Query: 204 NSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITP 263
++GANDLL VM SV + + S + SG LVW+PFVE IVP VDMN REMQITP
Sbjct: 204 STGANDLLQVMLDPSVKTPDHTGNPKSE-TGVSGPLVWVPFVEAIVPNVDMNKREMQITP 262
Query: 264 PKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQ 323
PKGLLELNLR+ ERSKKERRQLEWK+R+KFQ+RLIAAKKKL EMEQQHVFHGFRFG+K Q
Sbjct: 263 PKGLLELNLRSHERSKKERRQLEWKQRRKFQRRLIAAKKKLHEMEQQHVFHGFRFGQKAQ 322
Query: 324 TSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEGSLGPCA 383
SLLA+ IVG+NSKLLQQALQNIE+ S+RW+++E ++ +L +LK+S + P +
Sbjct: 323 RSLLADQIVGVNSKLLQQALQNIELSSQRWSSSEFISTKLTKLGQRTLKVSKKCLTTPGS 382
Query: 384 RAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTL 443
+K+ +N LQ+KG HL+S+GK A+VL V++SE+ C +V +A S + LQTL
Sbjct: 383 E-EKLDSNFELQEKGLHLMSKGKMAIVLFVNDSEKHGRCSVPELVDSESAGNSTSFLQTL 441
Query: 444 LSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSR 503
LSDD+ +K E+R S+PL++V PA E+ LE LF ++DHFAFD KKVWFLE+EKLP+VS
Sbjct: 442 LSDDRISLKKEDRVSVPLIMVSPAHEVHSLENLFSNHDHFAFDPKKVWFLEDEKLPVVSN 501
Query: 504 SPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI 563
S +N KILMKSPWE LQ VGSGGV SLLSS NI+ NL E+GVEYI+IC+ N
Sbjct: 502 SLGGENTQKILMKSPWEILQTSVGSGGVISLLSSENILDNLSEMGVEYIEICSVNEEFVS 561
Query: 564 GNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNHINKLEFYATPKLNS 623
G+S+ LG V S +D+G QISE + EE F+ + SM M KL + KL+F+ PKLNS
Sbjct: 562 GHSL-LGLVSSLESDVGIQISEGIEDIEENFHMIFSMKFMSKLAKQMKKLQFHGIPKLNS 620
Query: 624 HVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEITE 668
HVE V+KE++DV P +PNS EL SIYS LNACSLDKVCV+EI E
Sbjct: 621 HVEMVEKEWVDVTPTSPNSLELGCSIYSSLNACSLDKVCVVEIRE 665
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116700|ref|XP_002331856.1| predicted protein [Populus trichocarpa] gi|222875374|gb|EEF12505.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255557441|ref|XP_002519751.1| conserved hypothetical protein [Ricinus communis] gi|223541168|gb|EEF42724.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357519207|ref|XP_003629892.1| Ribosome maturation factor rimM [Medicago truncatula] gi|355523914|gb|AET04368.1| Ribosome maturation factor rimM [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|84468326|dbj|BAE71246.1| hypothetical protein [Trifolium pratense] | Back alignment and taxonomy information |
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| >gi|42568351|ref|NP_568663.2| RimM-like 16S rRNA processing protein [Arabidopsis thaliana] gi|10177579|dbj|BAB10810.1| unnamed protein product [Arabidopsis thaliana] gi|332008000|gb|AED95383.1| RimM-like 16S rRNA processing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297794617|ref|XP_002865193.1| 16S rRNA processing protein RimM family [Arabidopsis lyrata subsp. lyrata] gi|297311028|gb|EFH41452.1| 16S rRNA processing protein RimM family [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|125553343|gb|EAY99052.1| hypothetical protein OsI_21009 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|222632582|gb|EEE64714.1| hypothetical protein OsJ_19570 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|308081839|ref|NP_001183438.1| hypothetical protein [Zea mays] gi|238011556|gb|ACR36813.1| unknown [Zea mays] gi|413946543|gb|AFW79192.1| hypothetical protein ZEAMMB73_309885 [Zea mays] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 668 | ||||||
| TAIR|locus:2151461 | 653 | AT5G46420 [Arabidopsis thalian | 0.543 | 0.555 | 0.581 | 1.9e-110 | |
| UNIPROTKB|Q81WJ5 | 171 | rimM "Ribosome maturation fact | 0.188 | 0.736 | 0.375 | 6.8e-18 | |
| TIGR_CMR|BA_3980 | 171 | BA_3980 "16S rRNA processing p | 0.188 | 0.736 | 0.375 | 6.8e-18 | |
| UNIPROTKB|Q71YM3 | 169 | rimM "Ribosome maturation fact | 0.188 | 0.745 | 0.345 | 6.2e-16 | |
| UNIPROTKB|P66653 | 176 | rimM "Ribosome maturation fact | 0.194 | 0.738 | 0.333 | 5.2e-13 | |
| UNIPROTKB|Q47WU9 | 176 | rimM "Ribosome maturation fact | 0.188 | 0.715 | 0.365 | 7e-13 | |
| TIGR_CMR|CPS_4068 | 176 | CPS_4068 "16S rRNA processing | 0.188 | 0.715 | 0.365 | 7e-13 | |
| UNIPROTKB|Q5LNF0 | 167 | rimM "Ribosome maturation fact | 0.190 | 0.760 | 0.309 | 7.7e-12 | |
| TIGR_CMR|SPO_3255 | 167 | SPO_3255 "16S rRNA processing | 0.190 | 0.760 | 0.309 | 7.7e-12 | |
| UNIPROTKB|Q60BS2 | 172 | rimM "Ribosome maturation fact | 0.196 | 0.761 | 0.381 | 1.7e-11 |
| TAIR|locus:2151461 AT5G46420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1074 (383.1 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
Identities = 217/373 (58%), Positives = 279/373 (74%)
Query: 58 LLHSSATQEIVETSA-SGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQ 116
L S+AT E VETS+ SGLD V+VG++ VHGLQGEI +KP+TDFP+LRF+ PG RWL+Q
Sbjct: 60 LTRSTATDEAVETSSNSGLDLVEVGFLSGVHGLQGEICIKPNTDFPDLRFSKPGRRWLKQ 119
Query: 117 QVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE 176
Q+LG++ I EV+L++GR HP QKSWIL F G+D V+Q R LVG+TLLA + DRPEL++GE
Sbjct: 120 QLLGQDKIDEVELVEGRPHPAQKSWILKFRGLDDVDQVRQLVGATLLAEDDDRPELDEGE 179
Query: 177 FYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIXXXXXXXXXXXXXX 236
FY+RDLVGMRV++KETG+LVGTV N+F++G NDLLHV+ SS+ V
Sbjct: 180 FYSRDLVGMRVLLKETGQLVGTVANIFDNGGNDLLHVLLDSSMEVCNGNAKTN------- 232
Query: 237 XRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKR 296
+LVWIPFV+ IVP VD+ +EM ITPPKGLLE+N+R D+RSKKERRQLEWKERKK QKR
Sbjct: 233 -QLVWIPFVDAIVPDVDLERKEMYITPPKGLLEVNMRADDRSKKERRQLEWKERKKQQKR 291
Query: 297 LIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNAT 356
LIAAKKKL EMEQ+HVF G RFGEK Q +LLA+HI+ +NS LLQ+ALQ+I+ SKRWN T
Sbjct: 292 LIAAKKKLCEMEQKHVFDGLRFGEKSQRNLLADHILNVNSTLLQKALQSIDTSSKRWNVT 351
Query: 357 ELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNS 416
E +NA +A + +L +S E L A + + N S ++G +L SEGK ++ LV+++
Sbjct: 352 EEINALRARVSECNLSVSRE-CLSFDASKENMGDNFSFLQQGQNLFSEGKVSICLVLNDH 410
Query: 417 EEGNECDPHSVVS 429
E + VVS
Sbjct: 411 ENEEPEGENGVVS 423
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| UNIPROTKB|Q81WJ5 rimM "Ribosome maturation factor RimM" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_3980 BA_3980 "16S rRNA processing protein RimM" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q71YM3 rimM "Ribosome maturation factor RimM" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P66653 rimM "Ribosome maturation factor RimM" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q47WU9 rimM "Ribosome maturation factor RimM" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CPS_4068 CPS_4068 "16S rRNA processing protein RimM" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5LNF0 rimM "Ribosome maturation factor RimM" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SPO_3255 SPO_3255 "16S rRNA processing protein RimM" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q60BS2 rimM "Ribosome maturation factor RimM" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00003385001 | SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (665 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 668 | |||
| PRK00122 | 172 | PRK00122, rimM, 16S rRNA-processing protein RimM; | 7e-55 | |
| COG0806 | 174 | COG0806, RimM, RimM protein, required for 16S rRNA | 4e-43 | |
| TIGR02273 | 165 | TIGR02273, 16S_RimM, 16S rRNA processing protein R | 2e-41 | |
| pfam01782 | 84 | pfam01782, RimM, RimM N-terminal domain | 4e-19 | |
| PRK14592 | 165 | PRK14592, rimM, 16S rRNA-processing protein RimM; | 5e-18 | |
| PRK13828 | 161 | PRK13828, rimM, 16S rRNA-processing protein RimM; | 3e-17 | |
| cd04193 | 323 | cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphoryl | 6e-17 | |
| PRK13829 | 162 | PRK13829, rimM, 16S rRNA-processing protein RimM; | 1e-12 | |
| PRK14590 | 171 | PRK14590, rimM, 16S rRNA-processing protein RimM; | 1e-06 | |
| pfam05239 | 78 | pfam05239, PRC, PRC-barrel domain | 2e-06 | |
| PTZ00339 | 482 | PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyroph | 2e-06 | |
| PRK14594 | 166 | PRK14594, rimM, 16S rRNA-processing protein RimM; | 5e-06 | |
| cd06424 | 315 | cd06424, UGGPase, UGGPase catalyzes the synthesis | 2e-05 | |
| PLN02435 | 493 | PLN02435, PLN02435, probable UDP-N-acetylglucosami | 3e-05 | |
| COG4284 | 472 | COG4284, COG4284, UDP-glucose pyrophosphorylase [C | 5e-04 | |
| cd04180 | 266 | cd04180, UGPase_euk_like, Eukaryotic UGPase-like i | 0.001 | |
| PRK14593 | 184 | PRK14593, rimM, 16S rRNA-processing protein RimM; | 0.004 |
| >gnl|CDD|234650 PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
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Score = 184 bits (470), Expect = 7e-55
Identities = 68/194 (35%), Positives = 95/194 (48%), Gaps = 27/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + VG + S HG++GE+ VK TDFPE R G L + +EV++ GR H
Sbjct: 6 DLLVVGKIVSAHGIKGEVKVKSFTDFPE-RIFDYGPWLLGKG----GEWQEVEIESGRFH 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G I+ FEG+D A L G L PELE+ E+Y DL+G+ VV E GE
Sbjct: 61 KG--FLIVKFEGVDDRNAAEALKGCELFVPRSQLPELEEDEYYWHDLIGLEVVD-EDGEE 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V ++ +GAND+L V IPFVEE+V VD+
Sbjct: 118 LGKVTDILETGANDVLVV-------------------LKDKKEERLIPFVEEVVKEVDLE 158
Query: 256 GREMQITPPKGLLE 269
+ + + P+GLL+
Sbjct: 159 AKRITVDWPEGLLD 172
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Length = 172 |
| >gnl|CDD|223877 COG0806, RimM, RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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| >gnl|CDD|233805 TIGR02273, 16S_RimM, 16S rRNA processing protein RimM | Back alignment and domain information |
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| >gnl|CDD|216696 pfam01782, RimM, RimM N-terminal domain | Back alignment and domain information |
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| >gnl|CDD|173056 PRK14592, rimM, 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
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| >gnl|CDD|184351 PRK13828, rimM, 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
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| >gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
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| >gnl|CDD|184352 PRK13829, rimM, 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
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| >gnl|CDD|173054 PRK14590, rimM, 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
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| >gnl|CDD|218519 pfam05239, PRC, PRC-barrel domain | Back alignment and domain information |
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| >gnl|CDD|240368 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
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| >gnl|CDD|173058 PRK14594, rimM, 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
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| >gnl|CDD|133046 cd06424, UGGPase, UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
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| >gnl|CDD|215238 PLN02435, PLN02435, probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
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| >gnl|CDD|226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
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| >gnl|CDD|133023 cd04180, UGPase_euk_like, Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
| >gnl|CDD|237760 PRK14593, rimM, 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 668 | |||
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 100.0 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 100.0 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 100.0 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 100.0 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 100.0 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 100.0 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 100.0 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 100.0 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 100.0 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 100.0 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 100.0 | |
| PRK00122 | 172 | rimM 16S rRNA-processing protein RimM; Provisional | 100.0 | |
| COG0806 | 174 | RimM RimM protein, required for 16S rRNA processin | 100.0 | |
| PRK14590 | 171 | rimM 16S rRNA-processing protein RimM; Provisional | 100.0 | |
| PRK14591 | 169 | rimM 16S rRNA-processing protein RimM; Provisional | 100.0 | |
| PRK14592 | 165 | rimM 16S rRNA-processing protein RimM; Provisional | 100.0 | |
| PRK14593 | 184 | rimM 16S rRNA-processing protein RimM; Provisional | 100.0 | |
| TIGR02273 | 165 | 16S_RimM 16S rRNA processing protein RimM. This fa | 100.0 | |
| PRK14594 | 166 | rimM 16S rRNA-processing protein RimM; Provisional | 100.0 | |
| PRK13829 | 162 | rimM 16S rRNA-processing protein RimM; Provisional | 100.0 | |
| PRK13828 | 161 | rimM 16S rRNA-processing protein RimM; Provisional | 100.0 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 99.97 | |
| PF01782 | 84 | RimM: RimM N-terminal domain; InterPro: IPR002676 | 99.74 | |
| PF05239 | 79 | PRC: PRC-barrel domain; InterPro: IPR007903 The PR | 98.59 | |
| cd00226 | 246 | PRCH Photosynthetic reaction center (RC) complex, | 96.67 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 95.81 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 94.99 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 94.35 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 94.25 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 93.85 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 93.78 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 93.78 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 93.69 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 93.32 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 93.3 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 92.96 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 92.78 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 92.72 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 92.58 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 92.42 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 92.41 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 92.31 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 92.19 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 92.07 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 91.84 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 91.77 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 91.73 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 91.72 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 91.69 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 91.55 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 91.39 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 91.06 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 90.97 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 90.82 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 90.8 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 89.93 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 89.87 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 89.4 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 89.39 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 89.3 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 89.24 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 88.8 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 88.06 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 87.7 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 87.66 | |
| COG1873 | 87 | Protein implicated in RNA metabolism, contains PRC | 87.34 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 87.22 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 86.29 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 86.18 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 86.08 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 86.05 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 85.81 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 85.47 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 84.92 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 84.37 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 84.33 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 84.21 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 84.1 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 83.48 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 83.48 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 83.17 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 82.44 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 82.28 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 81.98 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 81.69 | |
| TIGR01150 | 252 | puhA photosynthetic reaction center, subunit H, ba | 80.45 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 80.09 |
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-81 Score=689.76 Aligned_cols=330 Identities=18% Similarity=0.310 Sum_probs=287.2
Q ss_pred HHHHHHHHHHHcCcccccccccCCCHHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCC
Q 005946 296 RLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISG 375 (668)
Q Consensus 296 ~~~~l~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql~~id~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~ 375 (668)
.+++++++|.++||+|||+||++|+++||++|++||.++|++++.+..+....++. . ..+.++|+|.
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~w~~ls~~e~~~L~~qL~~iD~~~l~~~~~~~~~~~~---~----------~~~~i~P~p~ 87 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFALWDELSPEERDLLVRDIESLDLPRIDRIIRCSLRSQG---L----------PVPAIEPVPE 87 (493)
T ss_pred cHHHHHHHHHHcChHHHHHhhhhCCHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC---C----------chhccCCCCh
Confidence 34678999999999999999999999999999999999999998877664332111 0 0124677766
Q ss_pred CCCCCCC--cchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCCc-ccccCCCCchhHHHHHHhhhhHHHH
Q 005946 376 EGSLGPC--ARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTLLSDDQRFV 451 (668)
Q Consensus 376 ~~~l~~~--~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~ 451 (668)
. .+.+. .+.+.. .+|+++|+++|++||||||+|||||||| |+..||+ ++|++++++||||+++ ++|+
T Consensus 88 ~-~~~~~~~~~~~~~---~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~-----e~I~ 158 (493)
T PLN02435 88 N-SVSTVEERTPEDR---ERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQA-----ERIL 158 (493)
T ss_pred h-hccchhccChHHH---HHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHH-----HHHH
Confidence 5 33321 222222 4799999999999999999999999999 6777995 7899999999999999 5555
Q ss_pred hhc------------CCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCC
Q 005946 452 KIE------------NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPW 519 (668)
Q Consensus 452 ~~~------------~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~ 519 (668)
+++ .++.||||||||+.||++|++||++|+|||++++||+||+|+++||++.+ |+++|++|+
T Consensus 159 ~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~d------g~i~l~~~~ 232 (493)
T PLN02435 159 CVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKD------GKFIMETPF 232 (493)
T ss_pred HHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceECCC------CCcccCCCc
Confidence 542 25789999999999999999999999999999999999999999999987 899999999
Q ss_pred CcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCCcEEEEEeeccCCCCcc-----
Q 005946 520 ETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER----- 593 (668)
Q Consensus 520 ~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~----- 593 (668)
+++|+|+||||+|.||+++|+|++|.++||+|+||+||||+|+ .+||.|||||+.+++||++|||+|+ .|+|+
T Consensus 233 ~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~-~~~EkvG~i~ 311 (493)
T PLN02435 233 KVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKA-YPQEKVGVFV 311 (493)
T ss_pred ccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecC-CCCCceeEEE
Confidence 9999999999999999999999999999999999999999998 5999999999999999999999998 45442
Q ss_pred --------------------------------------cceeeeHHHHHHHhhcc-cCccccccccCCCccccCCCCcce
Q 005946 594 --------------------------------------FNTMLSMNVMKKLTNHI-NKLEFYATPKLNSHVEKVDKEFID 634 (668)
Q Consensus 594 --------------------------------------~~h~fs~~fl~~~~~~~-~~L~~H~a~Kki~~~d~~~~~~~~ 634 (668)
|+|+||++||+++++.+ ..||||+|+|||||+|
T Consensus 312 ~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~-------- 383 (493)
T PLN02435 312 RRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIH-------- 383 (493)
T ss_pred EecCCCCEEEEEeccCCHHHHhccCccccccccchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccC--------
Confidence 37999999999998654 4699999999999984
Q ss_pred eccCCCCeEEEEEEEecccCCCCCCceEEEEec
Q 005946 635 VIPAAPNSYELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 635 v~P~~pN~~KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
.+|||||||+||||+||+|+ +++++||.
T Consensus 384 ---~~~ngiK~E~FiFDvf~~a~--~~~~~eV~ 411 (493)
T PLN02435 384 ---GYTMGLKLEQFIFDAFPYAP--STALFEVL 411 (493)
T ss_pred ---CCcceEEeeeeeecchhhcC--ceEEEEEc
Confidence 35799999999999999998 99999995
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
| >PRK00122 rimM 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
|---|
| >COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK14590 rimM 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
|---|
| >PRK14591 rimM 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
|---|
| >PRK14592 rimM 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
|---|
| >PRK14593 rimM 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
|---|
| >TIGR02273 16S_RimM 16S rRNA processing protein RimM | Back alignment and domain information |
|---|
| >PRK14594 rimM 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
|---|
| >PRK13829 rimM 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
|---|
| >PRK13828 rimM 16S rRNA-processing protein RimM; Provisional | Back alignment and domain information |
|---|
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA [] | Back alignment and domain information |
|---|
| >PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria | Back alignment and domain information |
|---|
| >cd00226 PRCH Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase | Back alignment and domain information |
|---|
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
| >COG1873 Protein implicated in RNA metabolism, contains PRC-barrel domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
| >TIGR01150 puhA photosynthetic reaction center, subunit H, bacterial | Back alignment and domain information |
|---|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 668 | ||||
| 2f1l_A | 187 | Crystal Structure Of A Putative 16s Ribosomal Rna P | 4e-11 | ||
| 3h9n_A | 177 | Crystal Structure Of The Ribosome Maturation Factor | 7e-06 | ||
| 1jvd_A | 522 | Crystal Structure Of Human Agx2 Complexed With Udpg | 2e-04 | ||
| 2dyi_A | 162 | Crystal Structure Of 16s Ribosomal Rna Processing P | 2e-04 | ||
| 1jv1_A | 505 | Crystal Structure Of Human Agx1 Complexed With Udpg | 2e-04 |
| >pdb|2F1L|A Chain A, Crystal Structure Of A Putative 16s Ribosomal Rna Processing Protein Rimm (Pa3744) From Pseudomonas Aeruginosa At 2.46 A Resolution Length = 187 | Back alignment and structure |
|
| >pdb|3H9N|A Chain A, Crystal Structure Of The Ribosome Maturation Factor Rimm (Hi0203) From H.Influenzae. Northeast Structural Genomics Consortium Target Ir66 Length = 177 | Back alignment and structure |
| >pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac Length = 522 | Back alignment and structure |
| >pdb|2DYI|A Chain A, Crystal Structure Of 16s Ribosomal Rna Processing Protein Rimm From Thermus Thermophilus Hb8 Length = 162 | Back alignment and structure |
| >pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac Length = 505 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae} Length = 177 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 6e-46
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 23/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + S +G++G + + ST+ E F +L+ + + ++L + R H
Sbjct: 5 VGKLGSTYGIRGWLRIYSSTEQAESIFD-YQPWFLKIK----GEWQSIELENWRYH--NH 57
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
I+ +G+D E A+ L + PELE+G++Y DL+G VV E G +GTV
Sbjct: 58 EIIVKLKGVDDREAAQILANVEIGVDLSVFPELEEGDYYWHDLIGCTVVNLE-GYTMGTV 116
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV-EEIVPIVDMNGRE 258
+ +G+ND+L V++ + + + + IPF+ E++V VD+ +
Sbjct: 117 TEMMETGSNDVL---------VVKANTKDAF-----GKQERLIPFLYEQVVKRVDLTTKT 162
Query: 259 MQITPPKGLLE 269
+++ G LE
Sbjct: 163 IEVDWDAGFLE 173
|
| >2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus} Length = 182 | Back alignment and structure |
|---|
| >2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4 Length = 187 | Back alignment and structure |
|---|
| >2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A Length = 162 | Back alignment and structure |
|---|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Length = 505 | Back alignment and structure |
|---|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Length = 486 | Back alignment and structure |
|---|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Length = 405 | Back alignment and structure |
|---|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Length = 630 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Length = 484 | Back alignment and structure |
|---|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Length = 528 | Back alignment and structure |
|---|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Length = 488 | Back alignment and structure |
|---|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Length = 505 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 668 | |||
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 100.0 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 100.0 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 100.0 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 100.0 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 100.0 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 100.0 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 100.0 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 100.0 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 100.0 | |
| 3h9n_A | 177 | Ribosome maturation factor RIMM; structural genomi | 100.0 | |
| 2f1l_A | 187 | 16S rRNA processing protein; structural genomics, | 100.0 | |
| 2qgg_A | 182 | 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR | 100.0 | |
| 2dyi_A | 162 | Probable 16S rRNA-processing protein RIMM; ribosom | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 96.47 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 95.36 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 94.83 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 94.54 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 94.04 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 94.01 | |
| 1eys_H | 259 | Photosynthetic reaction center; membrane protein c | 93.99 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 93.04 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 92.9 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 92.79 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 92.38 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 91.99 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 91.92 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 91.91 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 91.71 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 90.83 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 90.68 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 90.5 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 90.49 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 90.39 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 90.11 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 89.91 | |
| 3htr_A | 120 | Uncharacterized PRC-barrel domain protein; beta-ba | 89.5 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 89.5 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 89.13 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 89.02 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 88.97 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 88.77 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 87.54 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 87.42 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 87.3 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 87.25 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 87.2 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 86.36 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 86.24 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 86.13 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 85.37 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 84.03 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 83.15 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 82.96 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 82.06 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 81.73 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 81.09 | |
| 1pm3_A | 97 | MTH1895; unknown function, structural genomics, PS | 80.8 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 80.52 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 80.03 |
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-71 Score=613.32 Aligned_cols=343 Identities=18% Similarity=0.294 Sum_probs=295.0
Q ss_pred HHHHHHHHHHcCcccccccccCCCHHHHHHHHHHHhcC-CHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCC
Q 005946 297 LIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGI-NSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISG 375 (668)
Q Consensus 297 ~~~l~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql~~i-d~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~ 375 (668)
..+++++|+++||+|||+||++|+++||++|++||.++ |+..++++++.....++ +. +....++|+|.
T Consensus 6 ~~~l~~~l~~~gQ~hl~~~~~~l~~~ek~~l~~ql~~~~d~~~l~~~~~~~~~~~~----~~-------~~~~~i~p~p~ 74 (486)
T 2yqc_A 6 QQQIIDSFKQANQDQLFQYYDSLTIDQQQEFIDQLSTIEEPAKLISTVEQAIQFSQ----TN-------STSRNFTQLPN 74 (486)
T ss_dssp HHHHHHHHHHTTCGGGGTTGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTC---------------CCCEECCCG
T ss_pred HHHHHHHHHHcCcHHHhhhhccCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccc----cc-------cccccccCCCh
Confidence 46889999999999999999999999999999999999 99988877765432211 11 00123778887
Q ss_pred CCCCCC--CcchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCC-cccccCCCCchhHHHHHHhhhhHHHH
Q 005946 376 EGSLGP--CARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPH-SVVSESTANKSLALLQTLLSDDQRFV 451 (668)
Q Consensus 376 ~~~l~~--~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~ 451 (668)
+ .+.+ ..+.+++ .+|++.|+++|++||||+|+||||+||| |+..|| ++++.++++++||++++ +++.
T Consensus 75 ~-~~~~~~~~~~~~~---~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~-----e~l~ 145 (486)
T 2yqc_A 75 E-QTASTLDLSKDIL---QNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQA-----EKIL 145 (486)
T ss_dssp G-GEEETTTSCHHHH---HHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHH-----HHHH
T ss_pred h-hccccccCChHHH---HHHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHH-----HHHH
Confidence 6 3321 2233344 4799999999999999999999999999 666699 57899999999999998 6666
Q ss_pred hh--------c--CCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccc-eeccCCCCC
Q 005946 452 KI--------E--NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKF-KILMKSPWE 520 (668)
Q Consensus 452 ~~--------~--~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~g-kill~~~~~ 520 (668)
++ + +.+.||||||||+.||+.|++||++|+|||++.++|+||+|+++||++.+ | ++++++++.
T Consensus 146 ~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~d------g~~i~l~~~~~ 219 (486)
T 2yqc_A 146 KIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQ------GNKILLELKNS 219 (486)
T ss_dssp HHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCEEECBCTT------SSSBCEEETTE
T ss_pred HHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHHHhhccccCCCcceEEEEecccceeEcCC------CCccccCCCCc
Confidence 55 2 45789999999999999999999999999999999999999999999987 7 999999999
Q ss_pred cccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCCcEEEEEeeccCCC---------
Q 005946 521 TLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHS--------- 590 (668)
Q Consensus 521 i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~--------- 590 (668)
++|+|+||||+|.+|+++|+|++|.++|++|++|+|+||+|| .+||.|||||+.++++|+++||+|+.+.
T Consensus 220 i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~ 299 (486)
T 2yqc_A 220 ICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLD 299 (486)
T ss_dssp ECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEE
T ss_pred cccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCHHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEE
Confidence 999999999999999999999999999999999999999999 5999999999999999999999996221
Q ss_pred --C--------------------cc------------cceeeeHHHHHH-HhhcccC---ccccccccCCCccccCCCCc
Q 005946 591 --E--------------------ER------------FNTMLSMNVMKK-LTNHINK---LEFYATPKLNSHVEKVDKEF 632 (668)
Q Consensus 591 --~--------------------E~------------~~h~fs~~fl~~-~~~~~~~---L~~H~a~Kki~~~d~~~~~~ 632 (668)
+ ++ ++|+|+++||++ +.+.... ||||+|+|||||+|. .+|
T Consensus 300 ~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~--~~g 377 (486)
T 2yqc_A 300 QDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNL--ENG 377 (486)
T ss_dssp TTTTEEEEECGGGSCHHHHHCEETTEEEEESSCEEEEEEEEEEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECT--TTC
T ss_pred ecCCCEEEEEEecCCHHHhhcccccccccccccceeEEEEEEeHHHHHHHHHhhcCcccCCcceEeccccCcccc--ccC
Confidence 0 01 359999999999 5554446 999999999999852 357
Q ss_pred ceeccCCCCeEEEEEEEecccCCCCCCceEEEEec
Q 005946 633 IDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 633 ~~v~P~~pN~~KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
+.++|++|||+|||+||||+|+++++++++++||.
T Consensus 378 ~~~~p~~pn~~klE~~~~d~~~~~~l~~~~~~~V~ 412 (486)
T 2yqc_A 378 EFYKPTEPNGIKLEQFIFDVFPSVELNKFGCLEVD 412 (486)
T ss_dssp CEECCSSCCEEEEECCGGGGGGGSCGGGEEEEEEC
T ss_pred eeccCCCCCeeeeeehHhhHHhhcccCceEEEEEC
Confidence 89999999999999999999999988899999996
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
| >2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4 | Back alignment and structure |
|---|
| >2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus} | Back alignment and structure |
|---|
| >2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A | Back alignment and structure |
|---|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
| >1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1 | Back alignment and structure |
|---|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
| >3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
| >1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2 | Back alignment and structure |
|---|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 668 | ||||
| d1jv1a_ | 501 | c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphor | 8e-31 | |
| d2f1la1 | 75 | b.41.1.4 (A:101-175) 16S rRNA processing protein R | 3e-15 | |
| d2f1la2 | 89 | b.43.3.4 (A:7-95) 16S rRNA processing protein RimM | 6e-15 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 4e-04 |
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Length = 501 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Score = 124 bits (312), Expect = 8e-31
Identities = 72/413 (17%), Positives = 150/413 (36%), Gaps = 69/413 (16%)
Query: 301 KKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSK----LLQQALQNIEIPSKRWNAT 356
K L + Q+H+ + E+ Q L + +N + Q+A++ S + N
Sbjct: 7 KLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVD 66
Query: 357 ELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVH-N 415
M E++ S+ + + + + +G +S+ K A++L+
Sbjct: 67 ARMEPVPREVLGSATRDQDQ--------------LQAWESEGLFQISQNKVAVLLLAGGQ 112
Query: 416 SEEGNECDPHSVVSESTANK----SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQ 471
P + ++ + + L N+ +P ++ M+
Sbjct: 113 GTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTME 172
Query: 472 MLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGV 531
++ F + +F + V F ++ LP +S KI+++ + AP G+GG+
Sbjct: 173 STKEFFTKHKYFGLKKENVIFFQQGMLPAMS------FDGKIILEEKNKVSMAPDGNGGL 226
Query: 532 FSLLSSHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLGFVKSCGADIGF--------- 581
+ L++ NI++++++ G+ I + C N + + F+GF GAD G
Sbjct: 227 YRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPT 286
Query: 582 -------------QISEYAKHSEERFNTMLSMNVMKKLTNHIN----KLEFYAT------ 618
Q+ EY++ S S + +I + F
Sbjct: 287 EPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYE 346
Query: 619 PKLNSHVEK-----VDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEI 666
P+L HV + VD + + P PN ++ ++ K V E+
Sbjct: 347 PQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIF--QFAKKFVVYEV 397
|
| >d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 75 | Back information, alignment and structure |
|---|
| >d2f1la2 b.43.3.4 (A:7-95) 16S rRNA processing protein RimM, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 89 | Back information, alignment and structure |
|---|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 668 | |||
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 100.0 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 100.0 | |
| d2f1la2 | 89 | 16S rRNA processing protein RimM, N-terminal domai | 99.78 | |
| d2f1la1 | 75 | 16S rRNA processing protein RimM, C-terminal domai | 99.74 | |
| d1eysh1 | 201 | Photosynthetic reaction centre {Thermochromatium t | 96.02 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 95.98 | |
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 95.73 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 95.15 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 94.43 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 94.12 | |
| d2i5nh1 | 222 | Photosynthetic reaction centre {Rhodopseudomonas v | 92.96 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 92.96 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 91.59 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 91.46 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 91.44 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 90.84 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 90.76 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 90.46 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 89.94 | |
| d1rzhh1 | 213 | Photosynthetic reaction centre {Rhodobacter sphaer | 89.78 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 89.16 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 87.63 | |
| d1pm3a_ | 78 | MTH1895 {Archaeon Methanobacterium thermoautotroph | 87.39 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 86.52 |
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=100.00 E-value=1e-79 Score=682.63 Aligned_cols=340 Identities=20% Similarity=0.317 Sum_probs=295.6
Q ss_pred HHHHHHHHHHHcCcccccccccCCCHHHHHHHHHHHhcCCHHHHHHHHHhc----cCCccccchhhhhhhhhhhhhcccc
Q 005946 296 RLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNI----EIPSKRWNATELMNATKAELMISSL 371 (668)
Q Consensus 296 ~~~~l~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql~~id~~~l~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (668)
.+++|+++|+++||+|||+||+.|+++||++|++||.+||+..+.++++.. ..++...+ ....+.
T Consensus 2 ~~~~l~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~qL~~id~~~l~~~~~~a~~~~~~~~~~~~-----------~~~~~~ 70 (501)
T d1jv1a_ 2 NINDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKN-----------VDARME 70 (501)
T ss_dssp CHHHHHHHHHHTTCGGGGTTGGGSCHHHHHHHHHHHHTCCHHHHHHHHHHHHHCC----------------------CCB
T ss_pred CHHHHHHHHHHhCcHHHHhhhhhCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcccccC-----------cccccc
Confidence 357899999999999999999999999999999999999999777666532 22211111 123567
Q ss_pred cCCCCCCCCC-CcchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCC-cccccCCCCchhHHHHHHhhhhH
Q 005946 372 KISGEGSLGP-CARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPH-SVVSESTANKSLALLQTLLSDDQ 448 (668)
Q Consensus 372 ~vp~~~~l~~-~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK-~~~i~l~s~ksl~~l~~ll~~~e 448 (668)
|+|.. .+.+ ..+.+.+ .+|+++|+++|++||||||+|||||||| |+.+|| ++++++++++||||+++ +
T Consensus 71 p~p~~-~~~~~~~~~~~~---~~~~~~G~~~i~~gkvavvllaGG~GTRLG~~~pK~~~~v~~~~~ksllql~~-----e 141 (501)
T d1jv1a_ 71 PVPRE-VLGSATRDQDQL---QAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQA-----E 141 (501)
T ss_dssp CCCGG-GEEETTTTGGGH---HHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHH-----H
T ss_pred CCChh-hhcccccChHHH---HHHHHhhHHHHhcCCEEEEEECCCccccCCCCCCceeeeeccCCCCcHHHHHH-----H
Confidence 77766 3221 2223334 5899999999999999999999999999 677799 47899999999999998 5
Q ss_pred HHHhh--------cCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCC
Q 005946 449 RFVKI--------ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWE 520 (668)
Q Consensus 449 ~i~~~--------~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~ 520 (668)
+|+++ +.++.||||||||+.||++|++||++|+|||++++||+||+|+++||++.+ |+++|+++++
T Consensus 142 ~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~------g~i~~~~~~~ 215 (501)
T d1jv1a_ 142 RILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFD------GKIILEEKNK 215 (501)
T ss_dssp HHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEETT------SCBCEEETTE
T ss_pred HHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHHHHhccccCCCcCceEEEEecCcceECCC------CCcccCCCCc
Confidence 55554 357889999999999999999999999999999999999999999999998 7999999999
Q ss_pred cccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCCcEEEEEeeccCCCCcc------
Q 005946 521 TLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER------ 593 (668)
Q Consensus 521 i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~------ 593 (668)
++|+|+||||+|.+|+++|+|++|.++||+|++|+||||+|+ .+||.|||||+.++++|++|||+|+ .++|+
T Consensus 216 i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~k~-~~~e~~G~l~~ 294 (501)
T d1jv1a_ 216 VSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKT-NPTEPVGVVCR 294 (501)
T ss_dssp ECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECC-STTCSCCEEEE
T ss_pred ccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccccccCHHHHHHHHhcccceeEEEEEcC-CCCcccceEEE
Confidence 999999999999999999999999999999999999999998 6999999999999999999999999 45553
Q ss_pred ----------------------------------cceeeeHHHHHHHhhcc-cCccccccccCCCccccCCCCcceeccC
Q 005946 594 ----------------------------------FNTMLSMNVMKKLTNHI-NKLEFYATPKLNSHVEKVDKEFIDVIPA 638 (668)
Q Consensus 594 ----------------------------------~~h~fs~~fl~~~~~~~-~~L~~H~a~Kki~~~d~~~~~~~~v~P~ 638 (668)
+||+||++||+++++.. .+||||+|+|||||+ |.+|+.++|+
T Consensus 295 ~dg~~~vvEysel~~~~~~~~~~~g~l~f~~~Ni~~~~fsl~fl~~~~~~~~~~l~~hva~Kki~~~---d~~~~~~~p~ 371 (501)
T d1jv1a_ 295 VDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYV---DTQGQLIKPD 371 (501)
T ss_dssp ETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEE---CTTSCEECCS
T ss_pred ECCeEEEEEeccCCHHHHhhccCCCcccccccceeheeeEHHHHHHHHHhcccCCCceEeccccCcc---CCCCCcccCC
Confidence 26999999999997753 479999999999998 5678999999
Q ss_pred CCCeEEEEEEEecccCCCCCCceEEEEec
Q 005946 639 APNSYELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 639 ~pN~~KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
+|||||||+||||+||+++ +++++||.
T Consensus 372 ~~n~iklE~fifD~~~~~~--~~~~~~V~ 398 (501)
T d1jv1a_ 372 KPNGIKMEKFVFDIFQFAK--KFVVYEVL 398 (501)
T ss_dssp SCCEEEEECCGGGGGGGCS--SEEEEEEC
T ss_pred CCcchhHHHHHHHHHHhcc--ceEEEEEc
Confidence 9999999999999999998 99999995
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2f1la2 b.43.3.4 (A:7-95) 16S rRNA processing protein RimM, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre {Thermochromatium tepidum [TaxId: 1050]} | Back information, alignment and structure |
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| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
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| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
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| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2i5nh1 b.41.1.1 (H:37-258) Photosynthetic reaction centre {Rhodopseudomonas viridis [TaxId: 1079]} | Back information, alignment and structure |
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| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
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| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
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| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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| >d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
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| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1pm3a_ b.41.1.2 (A:) MTH1895 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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