Citrus Sinensis ID: 005959
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 667 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9Q8 | 684 | Probable pectin methyltra | yes | no | 0.991 | 0.966 | 0.718 | 0.0 | |
| Q8GYW9 | 603 | Probable methyltransferas | no | no | 0.875 | 0.968 | 0.549 | 0.0 | |
| Q3EC77 | 606 | Probable methyltransferas | no | no | 0.880 | 0.968 | 0.557 | 0.0 | |
| Q8H118 | 611 | Probable methyltransferas | no | no | 0.757 | 0.826 | 0.368 | 1e-104 | |
| Q8VZV7 | 612 | Probable methyltransferas | no | no | 0.856 | 0.933 | 0.364 | 1e-103 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.724 | 0.794 | 0.374 | 1e-102 | |
| Q940J9 | 623 | Probable methyltransferas | no | no | 0.757 | 0.810 | 0.377 | 1e-102 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.749 | 0.733 | 0.366 | 7e-97 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.757 | 0.727 | 0.339 | 4e-94 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.746 | 0.760 | 0.361 | 4e-93 |
| >sp|Q9C9Q8|PMTT_ARATH Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana GN=QUA2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/688 (71%), Positives = 569/688 (82%), Gaps = 27/688 (3%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHS-----------TDQSYLALS 49
MS PL RG+SG+R+S + D D +MK++ E+ ++++ ++QS
Sbjct: 1 MSMPLQRGISGVRVSDSSDDLRDSQMKDKTERARSTENNNLTLRFPFGFLFSNQSSSKHG 60
Query: 50 SG----------TPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYR 99
G + RSR +LFLK SL+ IV +AL GSFWWTISISTSSRGH+YH YR
Sbjct: 61 GGGENGFSADPYSARSRHRLMLLFLKISLVLIVVIALAGSFWWTISISTSSRGHVYHNYR 120
Query: 100 RLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC 159
RLQEQLVSDLWDIGEISLG +R K+LE+C+ + EN+VPCFN S NLALGYSNGDE DR C
Sbjct: 121 RLQEQLVSDLWDIGEISLGPNRWKELEYCNIESENFVPCFNVSENLALGYSNGDENDRFC 180
Query: 160 GQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS 219
G KQ CL LPPVKYR+PLRWPTG+D+IW SNVKITAQEV+SSGS+TKRMMM+E++QIS
Sbjct: 181 GPGSKQECLELPPVKYRVPLRWPTGKDIIWHSNVKITAQEVVSSGSITKRMMMMEDDQIS 240
Query: 220 FRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTM 279
FRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGAHL SK++LTM
Sbjct: 241 FRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGAHLLSKQILTM 299
Query: 280 CIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL 339
CIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+DWDQKDG+LL+
Sbjct: 300 CIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDWDQKDGLLLV 359
Query: 340 EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKK 399
E+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++QQDETVVWKK
Sbjct: 360 EIDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLNQQDETVVWKK 415
Query: 400 TSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANL 459
T CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE R WPSR+N+
Sbjct: 416 TINTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEGRTRWPSRSNM 475
Query: 460 NKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNV 519
NK EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDPSPPYNM+RNV
Sbjct: 476 NKTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDPSPPYNMLRNV 535
Query: 520 LDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRT 579
LDMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLH+WCE FPTYPRT
Sbjct: 536 LDMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHNWCEPFPTYPRT 595
Query: 580 YDLVHAEGLLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK 638
YDLVHA+ LLSL++ R C +DIFTEIDR+LRPEGWVIIRDTA+L+E AR T+LK
Sbjct: 596 YDLVHADNLLSLQTSQPRKTCLLIDIFTEIDRLLRPEGWVIIRDTAQLVEKARETITQLK 655
Query: 639 WDARVIEIESNSDERLLICQKPFFKRQA 666
W+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 656 WEARVIEVESSSEQRLLICQKPFTKRQS 683
|
May be involved in the synthesis of homogalacturonan. Required for normal cell adhesion and plant development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8GYW9|PMT4_ARATH Probable methyltransferase PMT4 OS=Arabidopsis thaliana GN=At1g13860 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/608 (54%), Positives = 431/608 (70%), Gaps = 24/608 (3%)
Query: 61 MLFLKFSLIAIVFLALTGS-FWWTISISTSSRGHIYHGYRRLQEQLVSDLWDIGEISLGS 119
+LFL +IA++ + + S T S + +IY Y R++EQ D D+ SLG
Sbjct: 16 LLFLTLGVIALITILVPNSDSSSTTSTTRVPPSNIYSNYGRVKEQAAVDYLDLRFFSLGV 75
Query: 120 SRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCG-QELKQHCLVLPPVKYRIP 178
+R K+ C ++ +NYVPC+N + E DR+C ++ CLV PP Y+IP
Sbjct: 76 NRLKEFPLCGKERDNYVPCYNVT-----------ESDRNCEFAREEERCLVRPPRDYKIP 124
Query: 179 LRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSAS-LIFDGVEDYSHQI 237
LRWP GRD+IW NVKIT + LSSG++TKR+M+LEE QI+F S LIFDGV+DY+ QI
Sbjct: 125 LRWPVGRDIIWTGNVKITKDQFLSSGTMTKRLMLLEENQITFHSDDGLIFDGVKDYAFQI 184
Query: 238 AEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297
AEMIGL +++ F AG+RT+LDIGCG+GSFGAHL S ++ +CIA YE SGSQVQL LER
Sbjct: 185 AEMIGLGSDTEFPQAGIRTVLDIGCGFGSFGAHLVSLNVMPICIAEYETSGSQVQLALER 244
Query: 298 GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357
GLPAMIG+F SKQLPYP+LSFDM+HCA+CG+ WD KD +LLLEVDRVLKPGGYFV TSP
Sbjct: 245 GLPAMIGNFFSKQLPYPALSFDMVHCAQCGITWDIKDAMLLLEVDRVLKPGGYFVLTSPT 304
Query: 358 TNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSI 417
+ Q + + V + + +CW L QQDET +W+KT+ +CYSSR S P +
Sbjct: 305 SKAQGNSPDTKKTSISTRVDELSKKICWSLSGQQDETFLWQKTADPNCYSSRSQASIP-V 363
Query: 418 CSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRAN-LNKNELAVYGVHPEEFAE 476
C + V PYY PL PCI GT+++RWIPI+ R SRA+ + +EL ++G+ PEEF E
Sbjct: 364 CKDDDSV--PYYHPLVPCISGTKSKRWIPIQNR----SRASGTSLSELEIHGIKPEEFDE 417
Query: 477 DTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEK 536
D + W++A+ N+WSLL+PLIFSDHPKRPGDEDP PP+ M+RN +DMNA +G N ALL +
Sbjct: 418 DIQVWRSALKNYWSLLTPLIFSDHPKRPGDEDPVPPFYMIRNAMDMNARYGNLNQALLNQ 477
Query: 537 GKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 596
GKSVWVMNVVP N LP+ILDRGF G LHDWCE FPTYPRTYD++HA LL+ S
Sbjct: 478 GKSVWVMNVVPVKARNTLPIILDRGFTGALHDWCEPFPTYPRTYDMLHANELLTHLSS-- 535
Query: 597 HRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSDERLLI 656
RCS +D+F E+DRILRPEGWV++ D +IE AR L R++W+ARVI+I+ SD+RLL+
Sbjct: 536 ERCSLMDLFLEMDRILRPEGWVVLSDKLGVIEMARTLAARVRWEARVIDIQDGSDQRLLV 595
Query: 657 CQKPFFKR 664
CQKP K+
Sbjct: 596 CQKPLLKK 603
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q3EC77|PMT5_ARATH Probable methyltransferase PMT5 OS=Arabidopsis thaliana GN=At2g03480 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/615 (55%), Positives = 438/615 (71%), Gaps = 28/615 (4%)
Query: 53 PRSRQNFTMLFLKFSLIAIV-FLALTGSFWWTISISTSSRGHIYHGYRRLQEQLVSDLWD 111
PR R +LF ++A+V LA S + S S++ +IY YRR++EQ D D
Sbjct: 17 PRIR---GLLFFIVGVVALVTILAPLTSNSYDSSSSSTLVPNIYSNYRRIKEQAAVDYLD 73
Query: 112 IGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQEL-KQHCLVL 170
+ +SLG+S K+ FC ++ E+YVPC+N + NL G G+E+DRHC E K+ C+V
Sbjct: 74 LRSLSLGASL-KEFPFCGKERESYVPCYNITGNLLAGLQEGEELDRHCEFEREKERCVVR 132
Query: 171 PPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSA-SLIFDG 229
PP Y+IPLRWP GRD+IW NVKIT + LSSG++T R+M+LEE QI+F S L+FDG
Sbjct: 133 PPRDYKIPLRWPLGRDIIWSGNVKITKDQFLSSGTVTTRLMLLEENQITFHSEDGLVFDG 192
Query: 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 289
V+DY+ QIAEMIGL +++ F AGVRT+LDIGCG+GSFGAHL S +L+ +CIA YEA+GS
Sbjct: 193 VKDYARQIAEMIGLGSDTEFAQAGVRTVLDIGCGFGSFGAHLVSLKLMPICIAEYEATGS 252
Query: 290 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG 349
QVQL LERGLPAMIG+F SKQLPYP+LSFDM+HCA+CG WD KD +LLLEVDRVLKPGG
Sbjct: 253 QVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGTTWDIKDAMLLLEVDRVLKPGG 312
Query: 350 YFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSR 409
YFV TSP Q L + + V + + +CW L +QQDET +W+KTS +SCYSSR
Sbjct: 313 YFVLTSPTNKAQGNLPDTKKTSISTRVNELSKKICWSLTAQQDETFLWQKTSDSSCYSSR 372
Query: 410 KPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGV 469
S P +C G+ V PYY PL PCI GT ++RWI I+ R + A L ++G
Sbjct: 373 SQASIP-LCKDGDSV--PYYHPLVPCISGTTSKRWISIQNRS---AVAGTTSAGLEIHG- 425
Query: 470 HPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGF 529
K+A+ N+WSLL+PLIFSDHPKRPGDEDP PP+NM+RNV+DM+A FG
Sbjct: 426 ------------KSALKNYWSLLTPLIFSDHPKRPGDEDPLPPFNMIRNVMDMHARFGNL 473
Query: 530 NSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLL 589
N+ALL++GKS WVMNVVP N LP+ILDRGF GVLHDWCE FPTYPRTYD++HA LL
Sbjct: 474 NAALLDEGKSAWVMNVVPVNARNTLPIILDRGFAGVLHDWCEPFPTYPRTYDMLHANELL 533
Query: 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESN 649
+ S RCS +D+F E+DRILRPEGWV++ D +IE ARAL R++W+ARVI+++
Sbjct: 534 THLSS--ERCSLMDLFLEMDRILRPEGWVVLSDKVGVIEMARALAARVRWEARVIDLQDG 591
Query: 650 SDERLLICQKPFFKR 664
SD+RLL+CQKPF K+
Sbjct: 592 SDQRLLVCQKPFIKK 606
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/554 (36%), Positives = 308/554 (55%), Gaps = 49/554 (8%)
Query: 123 KDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRI 177
+ C + +PC + + L L S + +RHC E + +CL+ PP Y+I
Sbjct: 77 RSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKI 136
Query: 178 PLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQ 236
P++WP RD +W N+ T L+ + M+++ E+I+F F G + Y
Sbjct: 137 PIKWPKSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIAS 193
Query: 237 IAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296
+A M+ N +RT LD+GCG SFG +L + E++TM +A + +Q+Q LE
Sbjct: 194 MANMLNFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALE 253
Query: 297 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356
RG+PA +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DRVL+PGGYF ++S
Sbjct: 254 RGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSS- 312
Query: 357 LTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPS 416
P+A+ +++E+ + W + V +CW + +++++TV+W+K CY R+PG+ P
Sbjct: 313 ---PEAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPP 369
Query: 417 ICSKGNDVESPYYRPLQPCIG-------GTRNRRWIPIEERRNWPSRANLNKNELAVYGV 469
+C+ +D ++ Y ++ CI T+ P WP+R LA +G
Sbjct: 370 LCNSDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAP------WPARLTSPPPRLADFGY 423
Query: 470 HPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGF 529
+ F +DTE W+ V +W LLSP I SD VRN++DM A G F
Sbjct: 424 STDIFEKDTETWRQRVDTYWDLLSPKIQSD---------------TVRNIMDMKASMGSF 468
Query: 530 NSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLL 589
+AL K K VWVMNVVP G N L +I DRG +G +H WCEAF TYPRTYDL+HA ++
Sbjct: 469 AAAL--KEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDII 526
Query: 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDA----RVIE 645
S + CS D+ E+DRILRP G+++IRD +++ + L W+A E
Sbjct: 527 S--DIKKRGCSAEDLLLEMDRILRPSGFILIRDKQSVVDLVKKYLKALHWEAVETKTASE 584
Query: 646 IESNSDERLLICQK 659
+ +SD +LI QK
Sbjct: 585 SDQDSDNVILIVQK 598
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 227/623 (36%), Positives = 340/623 (54%), Gaps = 52/623 (8%)
Query: 66 FSLIAIVFLALTG--SFWWTISISTSSR-GHIYHGYRRLQEQLVSDLWDIGEISLGSSR- 121
F+ + + F+AL G ++ S + SR + G + L + +I L SR
Sbjct: 16 FTYVLVGFIALLGLTCLYYGSSFAPGSRKSDEFDGSNNRVRTGIGSLRN-RDIVLAVSRF 74
Query: 122 --SKDLEFCSEDFENYVPCFNESRN----LALGYSNGDEVDRHCG-QELKQHCLVLPPVK 174
K + C +PC + + + L L S + + HC E + +CLV PPV
Sbjct: 75 EVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVG 134
Query: 175 YRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIF-DGVEDY 233
Y+IPLRWP RD +W +N+ T L+ + M++ ++I+F F +G + Y
Sbjct: 135 YKIPLRWPVSRDEVWKANIPHTH---LAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKY 191
Query: 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293
+A+M+ + +R +LD+GCG SFGA+L S +++ M +A + +Q+Q
Sbjct: 192 IVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQF 251
Query: 294 TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 353
LERG+P+ +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DR+L+PGGYFV+
Sbjct: 252 ALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 311
Query: 354 TSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGS 413
+S P+A+ + EN+K N + D + +CW++V+++D++V+W K SCY R PG
Sbjct: 312 SS----PEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGV 367
Query: 414 GPSICSKGNDVESPYYRPLQPCIGGTRNR----RWIPIEERRNWPSRANLNKNELAVYGV 469
P +C G+D ++ + ++ CI R RW + WP R L GV
Sbjct: 368 LPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVP---WPRRLTAPPPRLEEIGV 424
Query: 470 HPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGF 529
PE+F EDTE W+ V +W LL P++ N +RNV+DM+++ GGF
Sbjct: 425 TPEQFREDTETWRLRVIEYWKLLKPMVQK---------------NSIRNVMDMSSNLGGF 469
Query: 530 NSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLL 589
+AL K VWVMNV+P + + +I DRG +G HDWCEAF TYPRT+DL+HA
Sbjct: 470 AAAL--NDKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTF 527
Query: 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIE-- 647
+ E+ R CS D+ E+DRILRPEG+VIIRDT I + T LKWD E
Sbjct: 528 T-ETQARG-CSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPK 585
Query: 648 ----SNSDERLLICQKPFFKRQA 666
S DE +LI +K + A
Sbjct: 586 GDPLSTKDEIVLIARKKLWSLPA 608
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/534 (37%), Positives = 302/534 (56%), Gaps = 51/534 (9%)
Query: 123 KDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRI 177
+ C + +PC + + L L S + +RHC E + +CL+ PP Y++
Sbjct: 74 RSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKV 133
Query: 178 PLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQ 236
P++WP RD +W N+ T L+ + M+++ ++I+F F G + Y
Sbjct: 134 PIKWPKSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKY--- 187
Query: 237 IAEMIGLRNESNFILAG---VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293
IA M + N N +L +RT+ D+GCG SFG +L S ++LTM +A + +Q+Q
Sbjct: 188 IASMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQF 247
Query: 294 TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 353
LERG+PA +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DRVL+PGGYF +
Sbjct: 248 ALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAY 307
Query: 354 TSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGS 413
+S P+A+ +++E+ + W + VE +CW++ +++++TV+W+K CY R+PG+
Sbjct: 308 SS----PEAYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGT 363
Query: 414 GPSICSKGNDVESPYYRPLQPCIGG-------TRNRRWIPIEERRNWPSRANLNKNELAV 466
P +C ND ++ + ++ CI T+ P WP+R LA
Sbjct: 364 QPPLCRSDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAP------WPARLTSPPPRLAD 417
Query: 467 YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHF 526
+G F +DTE W+ V +W LLSP I SD VRN++DM A
Sbjct: 418 FGYSTGMFEKDTELWRQRVDTYWDLLSPRIESD---------------TVRNIMDMKASM 462
Query: 527 GGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAE 586
G F +AL E K VWVMNVVP G N L +I DRG +G +H WCEAF TYPRTYDL+HA
Sbjct: 463 GSFAAALKE--KDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAW 520
Query: 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWD 640
++S + CS +D+ E+DRILRP G++IIRD R+++ + L W+
Sbjct: 521 DIIS--DIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVVDFVKKYLKALHWE 572
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/538 (37%), Positives = 302/538 (56%), Gaps = 33/538 (6%)
Query: 122 SKDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYR 176
+K C + +PC + + L L S + +RHC E + +CL+ PP Y+
Sbjct: 81 AKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYK 140
Query: 177 IPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSH 235
+P++WP RD +W +N+ T L+ + M+ + E+ISF F G + Y
Sbjct: 141 VPIKWPKSRDEVWKANIPHTH---LAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIA 197
Query: 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295
IA M+ N+ +RT+LD+GCG SFGA+L + +++TM +A + +Q+Q L
Sbjct: 198 SIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFAL 257
Query: 296 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355
ERG+PA +G +K+LPYPS SF+ HC+RC +DW Q+DG+LLLE+DRVL+PGGYF ++S
Sbjct: 258 ERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSS 317
Query: 356 PLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGP 415
P+A+ +++EN K W + VE +CW + ++++TVVW+K CY R+PG+ P
Sbjct: 318 ----PEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGTQP 373
Query: 416 SICSKGNDVESPYYRPLQPCIGG-TRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEF 474
+C D ++ ++ CI +++ WP+R + LA +G + F
Sbjct: 374 PLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYSTDMF 433
Query: 475 AEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALL 534
+DTE WK V ++W+L+S + S N VRN++DM AH G F +AL
Sbjct: 434 EKDTELWKQQVDSYWNLMSSKVKS---------------NTVRNIMDMKAHMGSFAAAL- 477
Query: 535 EKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 594
K K VWVMNVV G N L +I DRG +G H+WCEAF TYPRTYDL+HA + S
Sbjct: 478 -KDKDVWVMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFS--DI 534
Query: 595 HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSDE 652
CS D+ E+DRILRP G+VIIRD ++ES + L W+ E + S E
Sbjct: 535 KSKGCSAEDLLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSE 592
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 204/556 (36%), Positives = 301/556 (54%), Gaps = 56/556 (10%)
Query: 123 KDLEFCSEDFENYVPCFN--ESRNLALGYSNGDEVDRHCGQE-LKQHCLVLPPVKYRIPL 179
+ E CSE+ Y+PC + E+ + G+ +R+C + + +C V P YR P+
Sbjct: 147 RKFEICSENMTEYIPCLDNVEAIKRLNSTARGERFERNCPNDGMGLNCTVPIPQGYRSPI 206
Query: 180 RWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIF-DGVEDYSHQIA 238
WP RD +W +NV T L + + E ++ F F G + Y QI+
Sbjct: 207 PWPRSRDEVWFNNVPHTK---LVEDKGGQNWIYKENDKFKFPGGGTQFIHGADQYLDQIS 263
Query: 239 EMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298
+MI + N R +LDIGCG SFGA+L S+ +LTM IA + +Q+Q LERG
Sbjct: 264 QMIPDISFGNH----TRVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERG 319
Query: 299 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358
+PAM+ +F +++L YPS +FD++HC+RC ++W + DGILLLEV+R+L+ GGYFVW +
Sbjct: 320 VPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAA--- 376
Query: 359 NPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSIC 418
+ K +++W + + LCW LV ++ +W+K +CY SR G P +C
Sbjct: 377 -QPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQKPVNNTCYLSRGAGVSPPLC 435
Query: 419 SKGNDVESPYYRPLQPCIGGTRNRRWIPIEER------RNWPSRA-----NLNKNELAVY 467
+ +D ++ +Y L+ CI TR IEE WP+R L ++ Y
Sbjct: 436 NSEDDPDNVWYVDLKACI--TR------IEENGYGANLAPWPARLLTPPDRLQTIQIDSY 487
Query: 468 GVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG 527
E F +++ WK + N+ + L H K+ G +RNVLDM A FG
Sbjct: 488 IARKELFVAESKYWKEIISNYVNAL-------HWKQIG----------LRNVLDMRAGFG 530
Query: 528 GFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEG 587
GF +AL E WV+NV+P G N LP+I DRG +GV+HDWCE F TYPRTYDL+HA G
Sbjct: 531 GFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAAG 590
Query: 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIE 647
L S+E R RC+ + E+DRILRP G V IRDT + + + ++W + E
Sbjct: 591 LFSIE---RKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSLRETA 647
Query: 648 S--NSDERLLICQKPF 661
+S R+L+C+K F
Sbjct: 648 EGPHSSYRVLLCEKRF 663
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (887), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 190/559 (33%), Positives = 300/559 (53%), Gaps = 54/559 (9%)
Query: 121 RSKDLEFCSEDFENYVPCFNESRNLALGYSN--GDEVDRHCGQELKQ-HCLVLPPVKYRI 177
R K C E Y+PC + + + S G+ +RHC ++ K +CLV PP YR
Sbjct: 173 RIKKFGMCPESMREYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQ 232
Query: 178 PLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIF-DGVEDYSHQ 236
P+ WP RD +W SNV T L + + ++ + F F G + Y Q
Sbjct: 233 PIPWPKSRDEVWFSNVPHTR---LVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQ 289
Query: 237 IAEMIGLRNESNFILAG-VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295
+++M+ S+ +R +D+GCG SFGA+L S++++TM +A + +Q+Q L
Sbjct: 290 MSKMV-----SDITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFAL 344
Query: 296 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355
ERG+PAM +FA+++L YPS +FD++HC+RC ++W + DGILLLE++R+L+ GGYF W +
Sbjct: 345 ERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAA 404
Query: 356 -PLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSG 414
P+ + L +++W + + +LCW+LV ++ +W+K CY SR+ G+
Sbjct: 405 QPVYKHEPAL-----EEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTK 459
Query: 415 PSICSKGNDVESPYYRPLQPCIGGTRNRRW---IPIEERRNWPSRANLNKNELAV----- 466
P +C + +D ++ +Y L+PCI + + +P+ WP+R + + L
Sbjct: 460 PPLCDESDDPDNVWYTNLKPCISRIPEKGYGGNVPL-----WPARLHTPPDRLQTIKFDS 514
Query: 467 YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHF 526
Y E F +++ W +G + L +RNVLDM A F
Sbjct: 515 YIARKELFKAESKYWNEIIGGYVRALKWKKMK-----------------LRNVLDMRAGF 557
Query: 527 GGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAE 586
GGF +AL + WV++VVP G N LP+I DRG +GV+HDWCE F TYPRTYD +HA
Sbjct: 558 GGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHAS 617
Query: 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEI 646
GL S+E R RC I E+DRILRP G IRD+ +++ + +T + W + +
Sbjct: 618 GLFSIE---RKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGWHTSLRDT 674
Query: 647 ES--NSDERLLICQKPFFK 663
++ R+L C+K +
Sbjct: 675 SEGPHASYRILTCEKRLLR 693
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (879), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 198/548 (36%), Positives = 296/548 (54%), Gaps = 50/548 (9%)
Query: 125 LEFCSEDFENYVPCF-NESRNLALGYSN-GDEVDRHCGQELKQHCLVLPPVKYRIPLRWP 182
L+ C + +Y+PC NE L ++ G+ +RHC ++ CL+ PP Y+ P++WP
Sbjct: 143 LKLCDKTKIDYIPCLDNEEEIKRLNNTDRGENYERHCPKQ-SLDCLIPPPDGYKKPIQWP 201
Query: 183 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIF-DGVEDYSHQIAEMI 241
RD IW +NV T L + + E+++ F F G + Y QI++MI
Sbjct: 202 QSRDKIWFNNVPHTR---LVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMI 258
Query: 242 GLRNESNFILAGVRT--ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL 299
I G RT LDIGCG SFGA L + T+ +A + +Q+Q LERG+
Sbjct: 259 P------DITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGV 312
Query: 300 PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359
PAM+ FA+++L YPS SF+M+HC+RC ++W + DGILLLEV+R+L+ GGYFVW +
Sbjct: 313 PAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAA---- 368
Query: 360 PQAFLRNKEN-QKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSIC 418
Q ++++N Q++W + D +CWEL+ ++ VW+K SCY SR+ G+ P +C
Sbjct: 369 -QPVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLC 427
Query: 419 SKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRAN-----LNKNELAVYGVHPEE 473
+D + +Y ++PCI + + WP+R + L ++ Y E
Sbjct: 428 RPDDDPDDVWYVDMKPCITRLPDNGY--GANVSTWPARLHDPPERLQSIQMDAYISRKEI 485
Query: 474 FAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSAL 533
++ W V ++ + F +RNVLDM A FGGF +AL
Sbjct: 486 MKAESRFWLEVVESYVRVFRWKEFK-----------------LRNVLDMRAGFGGFAAAL 528
Query: 534 LEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593
+ G WVMN+VP G N LP+I DRG G +HDWCE F TYPRTYDL+HA L S+E
Sbjct: 529 NDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFSVE- 587
Query: 594 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIES--NSD 651
+ RC+ +I E+DR+LRP G V IRD+ L++ + + + W A V + ++
Sbjct: 588 --KKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGWTAGVHDTGEGPHAS 645
Query: 652 ERLLICQK 659
R+LIC K
Sbjct: 646 VRILICDK 653
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 667 | ||||||
| 225459280 | 696 | PREDICTED: probable pectin methyltransfe | 1.0 | 0.958 | 0.754 | 0.0 | |
| 449437010 | 690 | PREDICTED: probable pectin methyltransfe | 0.989 | 0.956 | 0.725 | 0.0 | |
| 255545748 | 656 | S-adenosylmethionine-dependent methyltra | 0.940 | 0.955 | 0.738 | 0.0 | |
| 356508083 | 690 | PREDICTED: probable pectin methyltransfe | 0.994 | 0.960 | 0.714 | 0.0 | |
| 356515784 | 690 | PREDICTED: probable pectin methyltransfe | 0.994 | 0.960 | 0.714 | 0.0 | |
| 356552890 | 693 | PREDICTED: probable pectin methyltransfe | 0.992 | 0.955 | 0.737 | 0.0 | |
| 297842599 | 683 | hypothetical protein ARALYDRAFT_895718 [ | 0.991 | 0.967 | 0.726 | 0.0 | |
| 42563316 | 684 | putative pectin methyltransferase QUA2 [ | 0.991 | 0.966 | 0.718 | 0.0 | |
| 356547964 | 694 | PREDICTED: probable pectin methyltransfe | 0.992 | 0.953 | 0.728 | 0.0 | |
| 357489679 | 675 | hypothetical protein MTR_5g064080 [Medic | 0.979 | 0.967 | 0.704 | 0.0 |
| >gi|225459280|ref|XP_002285784.1| PREDICTED: probable pectin methyltransferase QUA2 [Vitis vinifera] gi|302141967|emb|CBI19170.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1107 bits (2863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/696 (75%), Positives = 595/696 (85%), Gaps = 29/696 (4%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLAL------------ 48
MSR + RGVSG+RISGN HD D +MK + EKED EK+ S+D + L+
Sbjct: 1 MSRAMHRGVSGLRISGNSHDSRDSQMKVKTEKEDSEKNRSSDHTCLSFKFPSVPFPDNSS 60
Query: 49 ---------------SSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGH 93
S+G+PRSR TML LK SL+ IV LALTGSF WTISI+TSSRG
Sbjct: 61 SKHGISENGFASDTFSAGSPRSRHKLTMLVLKLSLVLIVVLALTGSFLWTISITTSSRGQ 120
Query: 94 IYH--GYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSN 151
I+H GYRRL EQLVSDLWDIGE+SLG +R K++EFC ++EN+VPCFN S +LALGYS+
Sbjct: 121 IFHSHGYRRLYEQLVSDLWDIGELSLGPARLKEVEFCPLEYENHVPCFNVSESLALGYSD 180
Query: 152 GDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMM 211
G+E++R CG ++Q+CL PPV YRIPLRWPTGRD+IWV+NVKITAQEVLSSGSLTKRMM
Sbjct: 181 GEELNRRCGHGIRQNCLFPPPVNYRIPLRWPTGRDIIWVANVKITAQEVLSSGSLTKRMM 240
Query: 212 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL 271
MLEEEQISFRSASL+FDGVEDYSHQIAEMIGLRNESNFI AGVRTILDIGCGYGSFGAHL
Sbjct: 241 MLEEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESNFIQAGVRTILDIGCGYGSFGAHL 300
Query: 272 FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331
FSKE+LTMCIA+YEASGSQVQLTLERGLPAMIGSF SKQ+PYP LSFDM+HCARCG+DWD
Sbjct: 301 FSKEILTMCIASYEASGSQVQLTLERGLPAMIGSFTSKQMPYPYLSFDMVHCARCGIDWD 360
Query: 332 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391
QKDGILL+EVDRVL+PGGYFVWTSPLTN Q FLRNKE QKRWNFVR+F ENLCWE++SQQ
Sbjct: 361 QKDGILLIEVDRVLRPGGYFVWTSPLTNAQRFLRNKEMQKRWNFVRNFAENLCWEMLSQQ 420
Query: 392 DETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERR 451
DET VWKKTSK SCY+SRKPGSGPSICSK +D ESPYYRPL+ CIGGT++ RWIPI+ R
Sbjct: 421 DETAVWKKTSKKSCYASRKPGSGPSICSKRHDGESPYYRPLEACIGGTQSSRWIPIKART 480
Query: 452 NWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSP 511
WPSRA LN +EL +Y +H EEFAEDT++W A+ N+WSLLSPLIFSDHPKRPGDEDPSP
Sbjct: 481 TWPSRAKLNSSELQIYDLHSEEFAEDTQHWNLAIRNYWSLLSPLIFSDHPKRPGDEDPSP 540
Query: 512 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE 571
P+NM+RNVLDMNAH GGFNSALLE GKSVWVMNVVPTIG N+LP+ILDRGFVGVLHDWCE
Sbjct: 541 PFNMLRNVLDMNAHLGGFNSALLEAGKSVWVMNVVPTIGHNYLPLILDRGFVGVLHDWCE 600
Query: 572 AFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESAR 631
AFPTYPRTYD+VHA GLLSLE+ + RC+ LD+FTEIDR+LRPEGWVI+RDT LI+SAR
Sbjct: 601 AFPTYPRTYDMVHAAGLLSLETSQQRRCTMLDLFTEIDRLLRPEGWVILRDTVSLIDSAR 660
Query: 632 ALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 667
L TRLKWDARV+EIESNS+ERLL+CQKPFFKRQ +
Sbjct: 661 MLITRLKWDARVVEIESNSNERLLVCQKPFFKRQTN 696
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437010|ref|XP_004136285.1| PREDICTED: probable pectin methyltransferase QUA2-like [Cucumis sativus] gi|449496983|ref|XP_004160281.1| PREDICTED: probable pectin methyltransferase QUA2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/695 (72%), Positives = 573/695 (82%), Gaps = 35/695 (5%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQS---------YLALSSG 51
MSRPL RG SG+++ G+G D WD +MK++ +KE++++ S D L L
Sbjct: 1 MSRPLHRGASGVKVHGHGDDKWDSQMKDKTDKEEVDRKGSLDHGGNLAPRLPFRLLLPDN 60
Query: 52 TP--------------------RSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSR 91
+P RSRQ F + L+FSL+ I+ LALTGSFWWT+SIS SS+
Sbjct: 61 SPSKYGGTENGFASDSFLVGNSRSRQQFILQMLRFSLVLIIILALTGSFWWTLSISGSSQ 120
Query: 92 GHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSN 151
I+HGYRRLQEQLVSDLWDIGEISLG SR K+LEFC +FENYVPCFN S S
Sbjct: 121 VQIFHGYRRLQEQLVSDLWDIGEISLGPSRLKELEFCLPEFENYVPCFNSS------LSQ 174
Query: 152 GDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMM 211
DE DRHC +CL+ PP+KY+IPLRWPTGRDVIWVSNVKITA EVL SGSLTKRMM
Sbjct: 175 EDEYDRHCEPNSSLNCLIQPPLKYKIPLRWPTGRDVIWVSNVKITANEVLYSGSLTKRMM 234
Query: 212 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL 271
MLEEEQISFRSAS +FDGVEDYSHQIAEMIGLRNESNF GVRTILDIGCGYGSFGAHL
Sbjct: 235 MLEEEQISFRSASPMFDGVEDYSHQIAEMIGLRNESNFREIGVRTILDIGCGYGSFGAHL 294
Query: 272 FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331
FSK LLTMCIANYEASGSQVQLTLERGLPAM+GSF SKQLP+PSLS+DM+HCARCGVDWD
Sbjct: 295 FSKHLLTMCIANYEASGSQVQLTLERGLPAMLGSFTSKQLPFPSLSYDMVHCARCGVDWD 354
Query: 332 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391
KDG L+EVDRVLKPGGYFVWTSPLTN Q+ L KENQK WNF++DFVE LCWE+++QQ
Sbjct: 355 NKDGRYLIEVDRVLKPGGYFVWTSPLTNTQSVLNKKENQKSWNFIQDFVEYLCWEMLNQQ 414
Query: 392 DETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERR 451
DETVVWKKTSK++CYSSRKP S P IC KG+D+ESPYYRPLQ CIGG ++RRW+PI ER+
Sbjct: 415 DETVVWKKTSKSNCYSSRKPDSSPPICGKGHDIESPYYRPLQDCIGGRKSRRWVPIYERQ 474
Query: 452 NWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSP 511
WPSRANLNK+ELA++G+ ++ A+D+ NWK AV N+WSLLSPLIFSDHPKRPGDEDP P
Sbjct: 475 TWPSRANLNKSELALHGLALDDVADDSLNWKMAVKNYWSLLSPLIFSDHPKRPGDEDPLP 534
Query: 512 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE 571
PYNM+RNVLDMNAH+GGFNSALLE GKSVWVMNVVPT G NHLPMI+DRGF+GVLHDWCE
Sbjct: 535 PYNMLRNVLDMNAHYGGFNSALLEAGKSVWVMNVVPTDGPNHLPMIMDRGFIGVLHDWCE 594
Query: 572 AFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESAR 631
AFPTYPR+YDLVHA GLLSLE+ + RCS LD+F+EIDR+LRPEGWVIIRDT LIESAR
Sbjct: 595 AFPTYPRSYDLVHAAGLLSLEAIKKPRCSMLDLFSEIDRLLRPEGWVIIRDTTTLIESAR 654
Query: 632 ALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 666
+TT+LKWDARVIEIE N+DER+LICQKPF KRQA
Sbjct: 655 TVTTQLKWDARVIEIEDNNDERVLICQKPFLKRQA 689
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545748|ref|XP_002513934.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223547020|gb|EEF48517.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/696 (73%), Positives = 576/696 (82%), Gaps = 69/696 (9%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLAL------------ 48
MSRPL RG+SGMRISGN +D WD +MK++ EKE+LEK+ S+DQSYLAL
Sbjct: 1 MSRPLHRGISGMRISGNSNDLWDSQMKDKPEKEELEKNRSSDQSYLALRFPFRVLFPDNV 60
Query: 49 -----------------SSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSR 91
S GTPRSR FT+L LK SL+ I+ LALTGSFWWTISI+TSSR
Sbjct: 61 SPSKYGSTENGIASDPFSIGTPRSRHKFTLLLLKLSLVVILVLALTGSFWWTISITTSSR 120
Query: 92 GHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSN 151
G I+H YRRLQEQLVSDLWDIGE+SLGSSR K++EFC + +ENYVPC+N S N+ +
Sbjct: 121 GQIFHNYRRLQEQLVSDLWDIGELSLGSSRLKEVEFCPQQYENYVPCYNVSENI-----D 175
Query: 152 GDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMM 211
G+E DR+CG +Q CL LPP Y+IPLRWPTGRDVIWV+NVKITAQEVLSSGSLTKRMM
Sbjct: 176 GNENDRYCGLGSRQSCLALPPTNYKIPLRWPTGRDVIWVANVKITAQEVLSSGSLTKRMM 235
Query: 212 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL 271
ML++EQISFRSAS+ FD VEDYSHQIAEMIGLRNESNFI AGVRTILDIGCGYGSFGAHL
Sbjct: 236 MLDQEQISFRSASM-FDSVEDYSHQIAEMIGLRNESNFIKAGVRTILDIGCGYGSFGAHL 294
Query: 272 FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331
F ++LLTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLP+PSLSFDMLHCARCG+DWD
Sbjct: 295 FQRQLLTMCIANYEASGSQVQLTLERGLPAMIGSFTSKQLPFPSLSFDMLHCARCGIDWD 354
Query: 332 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391
Q KEN KRW+FVR F EN+CWE++SQQ
Sbjct: 355 Q----------------------------------KENLKRWDFVRGFAENMCWEMLSQQ 380
Query: 392 DETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERR 451
DETVVWKKT+K SCYSSRKPGSGPSICS+G+DVESPYYRPLQ CI GT++RRWIPIEER
Sbjct: 381 DETVVWKKTAKKSCYSSRKPGSGPSICSRGHDVESPYYRPLQACIAGTQSRRWIPIEERT 440
Query: 452 NWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSP 511
WPSR++L+KNELA+YG+HPEEF ED+E+W+T++ N+WSLLSPLIFSDHPKRPGDEDPSP
Sbjct: 441 IWPSRSHLSKNELAIYGLHPEEFTEDSESWRTSISNYWSLLSPLIFSDHPKRPGDEDPSP 500
Query: 512 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE 571
PYNM+RNVLDMNAHFGGFNSALLE GKSVWVMNVVPT G N+LPMILDRGFVGVLHDWCE
Sbjct: 501 PYNMLRNVLDMNAHFGGFNSALLEAGKSVWVMNVVPTSGPNYLPMILDRGFVGVLHDWCE 560
Query: 572 AFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESAR 631
AFPTYPRTYDLVHA GLLSLE+G +HRC+ LDIFTE+DR+LRPEGW+II DTA LIESAR
Sbjct: 561 AFPTYPRTYDLVHAAGLLSLETGQQHRCTMLDIFTEVDRLLRPEGWMIIHDTAPLIESAR 620
Query: 632 ALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 667
ALT RLKWDARVIEIESNSDERLLICQKPFFK+QAS
Sbjct: 621 ALTARLKWDARVIEIESNSDERLLICQKPFFKKQAS 656
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508083|ref|XP_003522790.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/694 (71%), Positives = 570/694 (82%), Gaps = 31/694 (4%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEK-------------------DHST 41
MSRPL RGVS N +D WD + K++ EKE L++ D+S
Sbjct: 1 MSRPLHRGVSIRIPDSNNNDLWDSQSKDKTEKEGLDRRGSFGHPSPLRSPFKLLFSDNSN 60
Query: 42 DQSYLALSS--------GTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGH 93
+ + + GTPRSR +LFLKFSL+ IV LAL GSFWWTISIST+SRGH
Sbjct: 61 SKYGIGENGFSSDPFIIGTPRSRHKLVLLFLKFSLVFIVILALAGSFWWTISISTASRGH 120
Query: 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGD 153
IYHGYRRLQE LVSDL DIGEIS SR K+LEFCSE+FENYVPCFN S NLALG+S+G+
Sbjct: 121 IYHGYRRLQENLVSDLLDIGEISYAPSRLKELEFCSEEFENYVPCFNVSDNLALGFSDGN 180
Query: 154 EVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMML 213
E DR C EL+ +CLVL P Y+IPLRWPTGRD+IW++N KITAQEVLSSGS TKRMMML
Sbjct: 181 EFDRQCHHELRPNCLVLSPPNYKIPLRWPTGRDIIWIANAKITAQEVLSSGSFTKRMMML 240
Query: 214 EEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS 273
+EEQISFRSASL+FDGVEDYSHQIAEMIGLRNES+FI AGVRTILDIGCGYGSFGAHLF
Sbjct: 241 DEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESSFIQAGVRTILDIGCGYGSFGAHLFQ 300
Query: 274 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
+LLTMCIA+YE SGSQVQLTLERGLPAM+ SF SKQLPYPSLSFDMLHCARCG+DWD+K
Sbjct: 301 SQLLTMCIASYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMLHCARCGIDWDRK 360
Query: 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDE 393
DGIL++E DR+L+PGGYFVWTSPLTN R+K++QKRW F++ F ENLCW+++SQQDE
Sbjct: 361 DGILMIEADRLLRPGGYFVWTSPLTNA----RDKDSQKRWKFIQSFAENLCWDMLSQQDE 416
Query: 394 TVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNW 453
TVVWKKTSK +CYSSRK S P +C +G DVESPYYR LQ CIGGT + RWI ++ER W
Sbjct: 417 TVVWKKTSKRNCYSSRKNSSPPPLCGRGYDVESPYYRELQNCIGGTHSSRWISVQERETW 476
Query: 454 PSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPY 513
PSR +LNK ELA++G+ +EFAED+E+WK AV N+WSLLSPLIFSDHPKRPGDEDP PPY
Sbjct: 477 PSRDHLNKKELAIFGLQSDEFAEDSESWKAAVRNYWSLLSPLIFSDHPKRPGDEDPPPPY 536
Query: 514 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAF 573
NM+RNVLDMNAH GGFNSA+L+ GKS+WVMNVVP G N+LP+I DRG+VGVLHDWCEAF
Sbjct: 537 NMLRNVLDMNAHVGGFNSAMLQAGKSIWVMNVVPLSGLNYLPLIQDRGYVGVLHDWCEAF 596
Query: 574 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARAL 633
PTYPRTYDLVHA GLLSLE + C+ LD+F EIDR+LRPEGW+IIRDT LIESARAL
Sbjct: 597 PTYPRTYDLVHAAGLLSLEFAQQRSCTMLDMFIEIDRLLRPEGWIIIRDTVPLIESARAL 656
Query: 634 TTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 667
TTRLKWDARV+EIES+SD+RLLICQKPFFKRQA+
Sbjct: 657 TTRLKWDARVVEIESDSDQRLLICQKPFFKRQAN 690
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515784|ref|XP_003526578.1| PREDICTED: probable pectin methyltransferase QUA2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1034 bits (2673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/694 (71%), Positives = 570/694 (82%), Gaps = 31/694 (4%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHST-----------------DQ 43
MSRPL RGVS N +D WD + K+++EKE L++ S+
Sbjct: 1 MSRPLHRGVSIRIPDSNNNDLWDSQSKDKSEKEGLDRRGSSGHPSPLRSPFRLLFSDNSN 60
Query: 44 SYLALSS----------GTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGH 93
S +S GTPRSR +LFL+FSL+ IV LAL GSFWWTISIST+SRGH
Sbjct: 61 SKYGISENGFSSDPFIIGTPRSRLKLVLLFLRFSLVFIVILALAGSFWWTISISTASRGH 120
Query: 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGD 153
IYHGYRRLQE+LVSDL DIGEIS SR K+LEFCSE+FENYVPCFN S NLALG+S+G+
Sbjct: 121 IYHGYRRLQEKLVSDLLDIGEISYAPSRLKELEFCSEEFENYVPCFNVSDNLALGFSDGN 180
Query: 154 EVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMML 213
E DR C EL+Q+CLVL P Y+IPLRWPTGRD+IW++N KITAQEVLSSGS TKRMMML
Sbjct: 181 EFDRQCRHELRQNCLVLSPPNYKIPLRWPTGRDIIWIANTKITAQEVLSSGSFTKRMMML 240
Query: 214 EEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS 273
+EEQISFRSASL+FDGVEDYSHQIAEMIGLRNES+FI AGVRTILDIGCGYGSFGAHLF
Sbjct: 241 DEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESSFIQAGVRTILDIGCGYGSFGAHLFQ 300
Query: 274 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
+LLTMCIA+YE SGSQVQLTLERGLPAM+ SF SKQLPYPSLSFDMLHCARCG+DWD+K
Sbjct: 301 SQLLTMCIASYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMLHCARCGIDWDRK 360
Query: 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDE 393
DGIL++E DR+L+PGGYFVWTSPLTN R+K++QKRW ++ F ENLCW+++SQQDE
Sbjct: 361 DGILMIEADRLLRPGGYFVWTSPLTNA----RDKDSQKRWKIIQSFAENLCWDMLSQQDE 416
Query: 394 TVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNW 453
TVVWKKT K +CYSSRK S P +C KG DVESPYYR LQ CIGGT + RWI ++ER+ W
Sbjct: 417 TVVWKKTIKRNCYSSRKNSSPPPLCGKGYDVESPYYRELQNCIGGTHSSRWISVKERQTW 476
Query: 454 PSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPY 513
PSR +LNK ELA++G+ +EFAED+E+WK AV N+WSLLSPLIFSDHPKRPGDEDP PPY
Sbjct: 477 PSRDHLNKKELAIFGLQSDEFAEDSESWKAAVRNYWSLLSPLIFSDHPKRPGDEDPPPPY 536
Query: 514 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAF 573
NM+RNVLDMNAH GGFNSALL+ GKS+WVMNVVP G N+LP+I DRG+VGVLHDWCEAF
Sbjct: 537 NMLRNVLDMNAHVGGFNSALLQAGKSLWVMNVVPLSGLNYLPLIQDRGYVGVLHDWCEAF 596
Query: 574 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARAL 633
PTYPRTYDLVHA GLLSLE + RC+ LD+F EIDR+LRPEGW+IIRD LIESARAL
Sbjct: 597 PTYPRTYDLVHAAGLLSLEFAQQRRCTMLDMFIEIDRLLRPEGWIIIRDIVPLIESARAL 656
Query: 634 TTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 667
TTRLKWDARV+EIES+SD+RLLICQKP FKRQA+
Sbjct: 657 TTRLKWDARVVEIESDSDQRLLICQKPLFKRQAN 690
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552890|ref|XP_003544795.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1032 bits (2668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/698 (73%), Positives = 577/698 (82%), Gaps = 36/698 (5%)
Query: 1 MSRPLLRGV-SGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALS---------- 49
MSRPL RGV G+R+ G+D WD + K++ EKEDL+K S D S AL
Sbjct: 1 MSRPLQRGVLGGVRVPERGYDLWDSQSKDKIEKEDLDKRGSADHSPFALRFPLRVLLGNN 60
Query: 50 --------------------SGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTS 89
GTPRS +L LKFSL+ IV LALTGSFWWT+SIS+S
Sbjct: 61 SESKYGNVKAENGFASDPFMVGTPRSLLKLMLLSLKFSLVFIVVLALTGSFWWTLSISSS 120
Query: 90 SRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGY 149
SRGHIYHGYRRLQE+LVSDL DIGE S G R K+ EFCSE+FEN+VPC+N S N+ LG
Sbjct: 121 SRGHIYHGYRRLQEKLVSDLLDIGEFSRGPLRLKESEFCSEEFENFVPCYNVSENVELGV 180
Query: 150 SNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKR 209
S+G+EVDR CG+EL+Q+CLVLPPV Y+IPLRWPTG+DVIWV+NVKI+AQEVLSSGSLTKR
Sbjct: 181 SDGNEVDRQCGRELRQNCLVLPPVNYKIPLRWPTGKDVIWVANVKISAQEVLSSGSLTKR 240
Query: 210 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 269
MMML+EEQISFRSAS +FDG+EDYSHQIAEMIGLRNES I AGVRTILDIGCGYGSFGA
Sbjct: 241 MMMLDEEQISFRSASHMFDGIEDYSHQIAEMIGLRNESYLIQAGVRTILDIGCGYGSFGA 300
Query: 270 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329
HLF +LLTMCIANYE SGSQVQLTLERGLPAMI SF SKQLPYPSLSFDMLHCARCG+D
Sbjct: 301 HLFDSQLLTMCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGID 360
Query: 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389
WDQKDG+LL+E DR+LKPGGYFVWTSPLTN RNKENQKRW F++DF LCWEL+S
Sbjct: 361 WDQKDGLLLIEADRLLKPGGYFVWTSPLTNA----RNKENQKRWKFIQDFTLTLCWELLS 416
Query: 390 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 449
QQDETVVWKKTSK SCY+SRK GSGPS+C +G DVE+PYYR L CIGGT++ RW+PIE+
Sbjct: 417 QQDETVVWKKTSKKSCYASRKSGSGPSLCGRGIDVETPYYRELLNCIGGTQSSRWVPIEK 476
Query: 450 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 509
R WPSRANLN NELA+Y + P+E ED+++WK AV N+WSL+SPLIFSDHPKRPGDEDP
Sbjct: 477 RERWPSRANLNNNELAIYVLQPDELTEDSDSWKIAVQNYWSLMSPLIFSDHPKRPGDEDP 536
Query: 510 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 569
SPPYNM RNVLDMNAHFGGFNSALL+ KSVWVMNVVP G N+LP+I DRGFVGVLHDW
Sbjct: 537 SPPYNMFRNVLDMNAHFGGFNSALLQARKSVWVMNVVPISGLNYLPLIQDRGFVGVLHDW 596
Query: 570 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIES 629
CEAFPTYPRTYDLVHA GLLSLE+ +HRCS LD+F EIDRILRPEGWVIIRDT LIES
Sbjct: 597 CEAFPTYPRTYDLVHAAGLLSLET-EKHRCSILDLFIEIDRILRPEGWVIIRDTVPLIES 655
Query: 630 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 667
AR LT +LKWDARVIEIES+SD+RLLICQKPFFKRQAS
Sbjct: 656 ARPLTAQLKWDARVIEIESDSDQRLLICQKPFFKRQAS 693
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842599|ref|XP_002889181.1| hypothetical protein ARALYDRAFT_895718 [Arabidopsis lyrata subsp. lyrata] gi|297335022|gb|EFH65440.1| hypothetical protein ARALYDRAFT_895718 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/687 (72%), Positives = 571/687 (83%), Gaps = 26/687 (3%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDH----------STDQSYLALSS 50
MS PL RG+SG+R+S + D D +MK++ E+ +H T+QS
Sbjct: 1 MSMPLQRGISGVRVSDSSDDLSDSQMKDKTERPRSSDNHLTLRFPFGFLFTNQSSSKHGG 60
Query: 51 G----------TPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYRR 100
G + RSR ++FLK SL+ IV +AL GSFWWTISISTSSRGH+YH YRR
Sbjct: 61 GGENGFSADPYSARSRHRLMLMFLKISLVLIVVIALAGSFWWTISISTSSRGHVYHNYRR 120
Query: 101 LQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCG 160
LQEQLVSDLWDIGEISLG +R K+LE+C+ + EN+VPCFN S NLALGYSNGDE DR CG
Sbjct: 121 LQEQLVSDLWDIGEISLGPNRWKELEYCNIESENFVPCFNVSENLALGYSNGDENDRFCG 180
Query: 161 QELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISF 220
KQ CLVLPPVKYR+PLRWPTG+D+IW SNVKITAQEV+SSGS+TKRMMM+E++QISF
Sbjct: 181 PGSKQECLVLPPVKYRVPLRWPTGKDIIWYSNVKITAQEVVSSGSITKRMMMMEDDQISF 240
Query: 221 RSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMC 280
RSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGAHL SK++LTMC
Sbjct: 241 RSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGAHLLSKQILTMC 299
Query: 281 IANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLE 340
IANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+DWDQKDG+LL+E
Sbjct: 300 IANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDWDQKDGLLLVE 359
Query: 341 VDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKT 400
+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++QQDETVVWKKT
Sbjct: 360 IDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLNQQDETVVWKKT 415
Query: 401 SKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLN 460
CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE R WPSR+N+N
Sbjct: 416 INTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEGRTRWPSRSNMN 475
Query: 461 KNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVL 520
K EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDPSPPYNM+RNVL
Sbjct: 476 KTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDPSPPYNMLRNVL 535
Query: 521 DMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTY 580
DMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLHDWCE FPTYPRTY
Sbjct: 536 DMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHDWCEPFPTYPRTY 595
Query: 581 DLVHAEGLLSLESGHRHR-CSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW 639
DLVHA+ LLSL++ R + C +DIFTEIDR+LRPEGWVIIRDT +L+ESARAL T+LKW
Sbjct: 596 DLVHADNLLSLQTSQRRKSCRLIDIFTEIDRLLRPEGWVIIRDTVQLVESARALVTQLKW 655
Query: 640 DARVIEIESNSDERLLICQKPFFKRQA 666
+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 656 EARVIEVESSSEQRLLICQKPFTKRQS 682
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42563316|ref|NP_177948.3| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] gi|238479105|ref|NP_001154475.1| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] gi|292630946|sp|Q9C9Q8.2|PMTT_ARATH RecName: Full=Probable pectin methyltransferase QUA2; AltName: Full=Protein OVERSENSITIVE TO SUGAR 1; AltName: Full=Protein QUASIMODO 2; AltName: Full=Protein TUMOROUS SHOOT DEVELOPMENT 2 gi|332197964|gb|AEE36085.1| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] gi|332197965|gb|AEE36086.1| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/688 (71%), Positives = 569/688 (82%), Gaps = 27/688 (3%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHS-----------TDQSYLALS 49
MS PL RG+SG+R+S + D D +MK++ E+ ++++ ++QS
Sbjct: 1 MSMPLQRGISGVRVSDSSDDLRDSQMKDKTERARSTENNNLTLRFPFGFLFSNQSSSKHG 60
Query: 50 SG----------TPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYR 99
G + RSR +LFLK SL+ IV +AL GSFWWTISISTSSRGH+YH YR
Sbjct: 61 GGGENGFSADPYSARSRHRLMLLFLKISLVLIVVIALAGSFWWTISISTSSRGHVYHNYR 120
Query: 100 RLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC 159
RLQEQLVSDLWDIGEISLG +R K+LE+C+ + EN+VPCFN S NLALGYSNGDE DR C
Sbjct: 121 RLQEQLVSDLWDIGEISLGPNRWKELEYCNIESENFVPCFNVSENLALGYSNGDENDRFC 180
Query: 160 GQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS 219
G KQ CL LPPVKYR+PLRWPTG+D+IW SNVKITAQEV+SSGS+TKRMMM+E++QIS
Sbjct: 181 GPGSKQECLELPPVKYRVPLRWPTGKDIIWHSNVKITAQEVVSSGSITKRMMMMEDDQIS 240
Query: 220 FRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTM 279
FRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGAHL SK++LTM
Sbjct: 241 FRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGAHLLSKQILTM 299
Query: 280 CIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL 339
CIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+DWDQKDG+LL+
Sbjct: 300 CIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDWDQKDGLLLV 359
Query: 340 EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKK 399
E+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++QQDETVVWKK
Sbjct: 360 EIDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLNQQDETVVWKK 415
Query: 400 TSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANL 459
T CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE R WPSR+N+
Sbjct: 416 TINTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEGRTRWPSRSNM 475
Query: 460 NKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNV 519
NK EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDPSPPYNM+RNV
Sbjct: 476 NKTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDPSPPYNMLRNV 535
Query: 520 LDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRT 579
LDMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLH+WCE FPTYPRT
Sbjct: 536 LDMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHNWCEPFPTYPRT 595
Query: 580 YDLVHAEGLLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK 638
YDLVHA+ LLSL++ R C +DIFTEIDR+LRPEGWVIIRDTA+L+E AR T+LK
Sbjct: 596 YDLVHADNLLSLQTSQPRKTCLLIDIFTEIDRLLRPEGWVIIRDTAQLVEKARETITQLK 655
Query: 639 WDARVIEIESNSDERLLICQKPFFKRQA 666
W+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 656 WEARVIEVESSSEQRLLICQKPFTKRQS 683
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547964|ref|XP_003542374.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/699 (72%), Positives = 575/699 (82%), Gaps = 37/699 (5%)
Query: 1 MSRPLLRGVSG-MRISGNGHDP-WDLEMKERNEKEDLEKDHSTDQSYLALS--------- 49
MSRPL RGVSG +R+ +GHD WD + K++ EKEDL+ S+D S L
Sbjct: 1 MSRPLQRGVSGGVRVPESGHDDLWDSQSKDKTEKEDLDTRGSSDHSPFTLRFPLRVLLGN 60
Query: 50 ---------------------SGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISIST 88
GTPRSR +L LKFSL+ IV LALTGSFWWT+SIS+
Sbjct: 61 NSDSKYGNGIAENGFASDPFMVGTPRSRLKLMLLSLKFSLVFIVVLALTGSFWWTLSISS 120
Query: 89 SSRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALG 148
SSRG IYHGYRRLQE+LVSD+ DI E S G R K+ EFCSE+FEN+VPC+N S ++ LG
Sbjct: 121 SSRGQIYHGYRRLQEKLVSDILDISEFSHGPLRLKESEFCSEEFENFVPCYNISEDVELG 180
Query: 149 YSNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTK 208
S+ +EVDR C EL+Q+CLVLPPV Y+IPLRWPTG+DVIWV+NVKI+AQEVLSSGSLTK
Sbjct: 181 VSDNNEVDRQCSHELRQNCLVLPPVNYKIPLRWPTGKDVIWVANVKISAQEVLSSGSLTK 240
Query: 209 RMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFG 268
RMMML+EEQISFRSAS +FDG+EDYSHQIAEMIGLRNES FI AGVRTILDIGCGYGSFG
Sbjct: 241 RMMMLDEEQISFRSASHMFDGIEDYSHQIAEMIGLRNESYFIQAGVRTILDIGCGYGSFG 300
Query: 269 AHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328
AHLF +LLTMCIANYE SGSQVQLTLERGLPAMI SF SKQLPYPSLSFDMLHCARCG+
Sbjct: 301 AHLFDSQLLTMCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGI 360
Query: 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 388
DWDQKDG+LL+E DR+LKPGGYFVWTSPLTN RNKENQKRW F++DF LCWEL+
Sbjct: 361 DWDQKDGLLLIEADRLLKPGGYFVWTSPLTNA----RNKENQKRWKFMQDFTLTLCWELL 416
Query: 389 SQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIE 448
SQQDETVVWKKTSK SCY+SRK GSGPS+C +G DVE+PYYR LQ CIGG ++ RW+PIE
Sbjct: 417 SQQDETVVWKKTSKKSCYASRKSGSGPSLCGRGIDVETPYYRELQNCIGGIQSSRWVPIE 476
Query: 449 ERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDED 508
+R WPSRANLN N LA+YG+ P+E ED+++WKTA+ N+WSL+SPLIFSDHPKRPGDED
Sbjct: 477 KRERWPSRANLNNNNLAIYGLQPDELTEDSDSWKTALQNYWSLMSPLIFSDHPKRPGDED 536
Query: 509 PSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHD 568
PSPPYNM RNVLDMNAHFGGFNSALL+ KS WVMNVVP G N+LP+I DRG+VGVLHD
Sbjct: 537 PSPPYNMFRNVLDMNAHFGGFNSALLQARKSAWVMNVVPISGPNYLPLIQDRGYVGVLHD 596
Query: 569 WCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE 628
WCEAFPTYPRTYDLVHA GLLSLE+ +HRCS LD+F EIDRILRPEGWVIIRDT LIE
Sbjct: 597 WCEAFPTYPRTYDLVHAAGLLSLET-EQHRCSMLDLFIEIDRILRPEGWVIIRDTVPLIE 655
Query: 629 SARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 667
SAR LT +LKWDARVIEIES+SD+RLLICQKPFFKRQAS
Sbjct: 656 SARPLTAQLKWDARVIEIESDSDQRLLICQKPFFKRQAS 694
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357489679|ref|XP_003615127.1| hypothetical protein MTR_5g064080 [Medicago truncatula] gi|355516462|gb|AES98085.1| hypothetical protein MTR_5g064080 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/687 (70%), Positives = 560/687 (81%), Gaps = 34/687 (4%)
Query: 1 MSRPLLRGVSG-MRISGN-GHDPWDLEMKERNEKEDLEKDHSTDQSYLALSS-------- 50
MSRPL RGVSG R+ N D WD + K+++EK+D ++ S+D + LAL S
Sbjct: 1 MSRPLHRGVSGGARVLENINDDTWDSQSKDKSEKDDFDRRGSSDHTPLALRSPLKLFSDK 60
Query: 51 -----------GTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYR 99
G+PRSR M +KFSL+ IV AL GSF WT+++S+SSRG +YHGYR
Sbjct: 61 ENGFASDPISVGSPRSRFKLMMFLVKFSLVFIVVFALVGSFLWTLNLSSSSRGRVYHGYR 120
Query: 100 RLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC 159
RLQE+LVSDL DIGEIS G+SR K+LE CS + EN+VPCFN S+G+E +R C
Sbjct: 121 RLQEKLVSDLLDIGEISRGASRWKELESCSPELENFVPCFN--------VSDGNEFERKC 172
Query: 160 GQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS 219
E Q+CLVLPPV Y++PLRWPTG+DVIWV+NVKITAQEVLSSGSLTKRMMML+EEQIS
Sbjct: 173 EYEQSQNCLVLPPVNYKVPLRWPTGKDVIWVANVKITAQEVLSSGSLTKRMMMLDEEQIS 232
Query: 220 FRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTM 279
FRSAS +FDGVEDYSHQIAEMIGLRNES+FI AG+RT+LDIGCGYGSFGAHLF ++LT+
Sbjct: 233 FRSASHMFDGVEDYSHQIAEMIGLRNESSFIQAGIRTVLDIGCGYGSFGAHLFDSQILTL 292
Query: 280 CIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL 339
CIANYE SGSQVQLTLERGLPAMI SF SKQLPYPSLSFDMLHCARCG+DWDQKDG LL+
Sbjct: 293 CIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGIDWDQKDGNLLI 352
Query: 340 EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKK 399
E DR+L+PGGYFVWTSPLTN RNKENQKRW V DF ENLCWE++SQQDETVV+KK
Sbjct: 353 EADRLLRPGGYFVWTSPLTNA----RNKENQKRWKIVHDFTENLCWEMLSQQDETVVFKK 408
Query: 400 TSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANL 459
SK +CY+SRK GS P +C +G DVESPYYR LQ CIGGT+ RRW+ IE+R WPSRANL
Sbjct: 409 ASKKNCYTSRKKGSRP-LCGRGLDVESPYYRELQNCIGGTQTRRWLSIEKREKWPSRANL 467
Query: 460 NKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNV 519
NKNELA++G+ P+E ED+++WK AV N+WSLLSP+IFSDHPKRPGDEDPSPPYNM RNV
Sbjct: 468 NKNELAIHGLLPDELGEDSDSWKAAVQNYWSLLSPVIFSDHPKRPGDEDPSPPYNMFRNV 527
Query: 520 LDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRT 579
LDMNA+FGGFNSALL+ KSVWVMNVVP G N+LP+I DRGFVGVLHDWCEAFPTYPRT
Sbjct: 528 LDMNANFGGFNSALLQARKSVWVMNVVPRSGPNYLPLIQDRGFVGVLHDWCEAFPTYPRT 587
Query: 580 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW 639
YDLVHA G+LSLE RC+ LD+F EIDR+LRPEGW+IIRDT LIESAR L +LKW
Sbjct: 588 YDLVHAAGILSLEFSQPLRCTMLDLFIEIDRLLRPEGWIIIRDTIPLIESARVLAAQLKW 647
Query: 640 DARVIEIESNSDERLLICQKPFFKRQA 666
+ARVIEIESNS+E+LLICQKPFFK+ A
Sbjct: 648 EARVIEIESNSEEKLLICQKPFFKKHA 674
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 667 | ||||||
| TAIR|locus:2032130 | 684 | TSD2 "TUMOROUS SHOOT DEVELOPME | 0.991 | 0.966 | 0.706 | 1.1e-268 | |
| TAIR|locus:2063798 | 606 | QUL2 "QUASIMODO2 LIKE 2" [Arab | 0.578 | 0.636 | 0.547 | 1.2e-188 | |
| TAIR|locus:2014789 | 603 | QUL1 "QUASIMODO2 LIKE 1" [Arab | 0.869 | 0.961 | 0.547 | 2.7e-180 | |
| TAIR|locus:2145658 | 612 | AT5G14430 [Arabidopsis thalian | 0.559 | 0.609 | 0.361 | 1.1e-103 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.556 | 0.595 | 0.348 | 2.5e-100 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.544 | 0.594 | 0.354 | 8.6e-100 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.542 | 0.595 | 0.356 | 8.6e-100 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.520 | 0.529 | 0.341 | 2.4e-91 | |
| TAIR|locus:2076264 | 591 | AT3G10200 [Arabidopsis thalian | 0.526 | 0.593 | 0.356 | 9e-90 | |
| TAIR|locus:2150670 | 600 | AT5G04060 [Arabidopsis thalian | 0.526 | 0.585 | 0.349 | 2.4e-89 |
| TAIR|locus:2032130 TSD2 "TUMOROUS SHOOT DEVELOPMENT 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2584 (914.7 bits), Expect = 1.1e-268, P = 1.1e-268
Identities = 486/688 (70%), Positives = 558/688 (81%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEK-EDLEKDHST----------DQSYLALS 49
MS PL RG+SG+R+S + D D +MK++ E+ E ++ T +QS
Sbjct: 1 MSMPLQRGISGVRVSDSSDDLRDSQMKDKTERARSTENNNLTLRFPFGFLFSNQSSSKHG 60
Query: 50 SG----------TPRSRQNFTMLFLKFSLIAIVFLALTGSFXXXXXXXXXXRGHIYHGYR 99
G + RSR +LFLK SL+ IV +AL GSF RGH+YH YR
Sbjct: 61 GGGENGFSADPYSARSRHRLMLLFLKISLVLIVVIALAGSFWWTISISTSSRGHVYHNYR 120
Query: 100 RLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC 159
RLQEQLVSDLWDIGEISLG +R K+LE+C+ + EN+VPCFN S NLALGYSNGDE DR C
Sbjct: 121 RLQEQLVSDLWDIGEISLGPNRWKELEYCNIESENFVPCFNVSENLALGYSNGDENDRFC 180
Query: 160 GQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS 219
G KQ CL LPPVKYR+PLRWPTG+D+IW SNVKITAQEV+SSGS+TKRMMM+E++QIS
Sbjct: 181 GPGSKQECLELPPVKYRVPLRWPTGKDIIWHSNVKITAQEVVSSGSITKRMMMMEDDQIS 240
Query: 220 FRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTM 279
FRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGAHL SK++LTM
Sbjct: 241 FRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGAHLLSKQILTM 299
Query: 280 CIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL 339
CIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+DWDQKDG+LL+
Sbjct: 300 CIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDWDQKDGLLLV 359
Query: 340 EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKK 399
E+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++QQDETVVWKK
Sbjct: 360 EIDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLNQQDETVVWKK 415
Query: 400 TSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANL 459
T CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE R WPSR+N+
Sbjct: 416 TINTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEGRTRWPSRSNM 475
Query: 460 NKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNV 519
NK EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDPSPPYNM+RNV
Sbjct: 476 NKTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDPSPPYNMLRNV 535
Query: 520 LDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRT 579
LDMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLH+WCE FPTYPRT
Sbjct: 536 LDMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHNWCEPFPTYPRT 595
Query: 580 YDLVHAEGLLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK 638
YDLVHA+ LLSL++ R C +DIFTEIDR+LRPEGWVIIRDTA+L+E AR T+LK
Sbjct: 596 YDLVHADNLLSLQTSQPRKTCLLIDIFTEIDRLLRPEGWVIIRDTAQLVEKARETITQLK 655
Query: 639 WDARVIEIESNSDERLLICQKPFFKRQA 666
W+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 656 WEARVIEVESSSEQRLLICQKPFTKRQS 683
|
|
| TAIR|locus:2063798 QUL2 "QUASIMODO2 LIKE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1109 (395.4 bits), Expect = 1.2e-188, Sum P(2) = 1.2e-188
Identities = 215/393 (54%), Positives = 274/393 (69%)
Query: 61 MLFLKFSLIAIV-FLALTGSFXXXXXXXXXXRGHIYHGYRRLQEQLVSDLWDIGEISLGS 119
+LF ++A+V LA S +IY YRR++EQ D D+ +SLG+
Sbjct: 22 LLFFIVGVVALVTILAPLTSNSYDSSSSSTLVPNIYSNYRRIKEQAAVDYLDLRSLSLGA 81
Query: 120 SRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQEL-KQHCLVLPPVKYRIP 178
S K+ FC ++ E+YVPC+N + NL G G+E+DRHC E K+ C+V PP Y+IP
Sbjct: 82 SL-KEFPFCGKERESYVPCYNITGNLLAGLQEGEELDRHCEFEREKERCVVRPPRDYKIP 140
Query: 179 LRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSAS-LIFDGVEDYSHQI 237
LRWP GRD+IW NVKIT + LSSG++T R+M+LEE QI+F S L+FDGV+DY+ QI
Sbjct: 141 LRWPLGRDIIWSGNVKITKDQFLSSGTVTTRLMLLEENQITFHSEDGLVFDGVKDYARQI 200
Query: 238 AEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297
AEMIGL +++ F AGVRT+LDIGCG+GSFGAHL S +L+ +CIA YEA+GSQVQL LER
Sbjct: 201 AEMIGLGSDTEFAQAGVRTVLDIGCGFGSFGAHLVSLKLMPICIAEYEATGSQVQLALER 260
Query: 298 GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357
GLPAMIG+F SKQLPYP+LSFDM+HCA+CG WD KD +LLLEVDRVLKPGGYFV TSP
Sbjct: 261 GLPAMIGNFFSKQLPYPALSFDMVHCAQCGTTWDIKDAMLLLEVDRVLKPGGYFVLTSPT 320
Query: 358 TNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSI 417
Q L + + V + + +CW L +QQDET +W+KTS +SCYSSR S P +
Sbjct: 321 NKAQGNLPDTKKTSISTRVNELSKKICWSLTAQQDETFLWQKTSDSSCYSSRSQASIP-L 379
Query: 418 CSKGNDVESPYYRPLQPCIGGTRNRRWIPIEER 450
C G+ V PYY PL PCI GT ++RWI I+ R
Sbjct: 380 CKDGDSV--PYYHPLVPCISGTTSKRWISIQNR 410
|
|
| TAIR|locus:2014789 QUL1 "QUASIMODO2 LIKE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1750 (621.1 bits), Expect = 2.7e-180, P = 2.7e-180
Identities = 335/612 (54%), Positives = 433/612 (70%)
Query: 61 MLFLKFSLIAIVFLALTGSFXXXXXXXXXXR-GHIYHGYRRLQEQLVSDLWDIGEISLGS 119
+LFL +IA++ + + S +IY Y R++EQ D D+ SLG
Sbjct: 16 LLFLTLGVIALITILVPNSDSSSTTSTTRVPPSNIYSNYGRVKEQAAVDYLDLRFFSLGV 75
Query: 120 SRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC--GQELKQHCLVLPPVKYRI 177
+R K+ C ++ +NYVPC+N + E DR+C +E ++ CLV PP Y+I
Sbjct: 76 NRLKEFPLCGKERDNYVPCYNVT-----------ESDRNCEFARE-EERCLVRPPRDYKI 123
Query: 178 PLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSAS-LIFDGVEDYSHQ 236
PLRWP GRD+IW NVKIT + LSSG++TKR+M+LEE QI+F S LIFDGV+DY+ Q
Sbjct: 124 PLRWPVGRDIIWTGNVKITKDQFLSSGTMTKRLMLLEENQITFHSDDGLIFDGVKDYAFQ 183
Query: 237 IAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296
IAEMIGL +++ F AG+RT+LDIGCG+GSFGAHL S ++ +CIA YE SGSQVQL LE
Sbjct: 184 IAEMIGLGSDTEFPQAGIRTVLDIGCGFGSFGAHLVSLNVMPICIAEYETSGSQVQLALE 243
Query: 297 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356
RGLPAMIG+F SKQLPYP+LSFDM+HCA+CG+ WD KD +LLLEVDRVLKPGGYFV TSP
Sbjct: 244 RGLPAMIGNFFSKQLPYPALSFDMVHCAQCGITWDIKDAMLLLEVDRVLKPGGYFVLTSP 303
Query: 357 LTNPQAFLRNKENQKRWNF---VRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGS 413
+ Q N + K+ + V + + +CW L QQDET +W+KT+ +CYSSR S
Sbjct: 304 TSKAQG---NSPDTKKTSISTRVDELSKKICWSLSGQQDETFLWQKTADPNCYSSRSQAS 360
Query: 414 GPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRAN-LNKNELAVYGVHPE 472
P +C + V PYY PL PCI GT+++RWIPI+ R SRA+ + +EL ++G+ PE
Sbjct: 361 IP-VCKDDDSV--PYYHPLVPCISGTKSKRWIPIQNR----SRASGTSLSELEIHGIKPE 413
Query: 473 EFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSA 532
EF ED + W++A+ N+WSLL+PLIFSDHPKRPGDEDP PP+ M+RN +DMNA +G N A
Sbjct: 414 EFDEDIQVWRSALKNYWSLLTPLIFSDHPKRPGDEDPVPPFYMIRNAMDMNARYGNLNQA 473
Query: 533 LLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592
LL +GKSVWVMNVVP N LP+ILDRGF G LHDWCE FPTYPRTYD++HA LL+
Sbjct: 474 LLNQGKSVWVMNVVPVKARNTLPIILDRGFTGALHDWCEPFPTYPRTYDMLHANELLTHL 533
Query: 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSDE 652
S R CS +D+F E+DRILRPEGWV++ D +IE AR L R++W+ARVI+I+ SD+
Sbjct: 534 SSER--CSLMDLFLEMDRILRPEGWVVLSDKLGVIEMARTLAARVRWEARVIDIQDGSDQ 591
Query: 653 RLLICQKPFFKR 664
RLL+CQKP K+
Sbjct: 592 RLLVCQKPLLKK 603
|
|
| TAIR|locus:2145658 AT5G14430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
Identities = 143/396 (36%), Positives = 224/396 (56%)
Query: 114 EISLGSSR---SKDLEFCSEDFENYVPCFNESRN----LALGYSNGDEVDRHCG-QELKQ 165
+I L SR K + C +PC + + + L L S + + HC E +
Sbjct: 66 DIVLAVSRFEVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRF 125
Query: 166 HCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASL 225
+CLV PPV Y+IPLRWP RD +W +N+ T L+ + M++ ++I+F
Sbjct: 126 NCLVPPPVGYKIPLRWPVSRDEVWKANIPHTH---LAQEKSDQNWMVVNGDKINFPGGGT 182
Query: 226 IF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANY 284
F +G + Y +A+M+ + +R +LD+GCG SFGA+L S +++ M +A
Sbjct: 183 HFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPN 242
Query: 285 EASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRV 344
+ +Q+Q LERG+P+ +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DR+
Sbjct: 243 DVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRL 302
Query: 345 LKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKAS 404
L+PGGYFV++SP +A+ + EN+K N + D + +CW++V+++D++V+W K S
Sbjct: 303 LRPGGYFVYSSP----EAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNS 358
Query: 405 CYSSRKPGSGPSICSKGNDVESPYYRPLQPCIG--GTR--NRRWIPIEERRNWPSRANLN 460
CY R PG P +C G+D ++ + ++ CI R RW + WP R
Sbjct: 359 CYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVP---WPRRLTAP 415
Query: 461 KNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLI 496
L GV PE+F EDTE W+ V +W LL P++
Sbjct: 416 PPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMV 451
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 2.5e-100, Sum P(2) = 2.5e-100
Identities = 134/385 (34%), Positives = 218/385 (56%)
Query: 122 SKDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYR 176
+K C + +PC + + L L S + +RHC E + +CL+ PP Y+
Sbjct: 81 AKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYK 140
Query: 177 IPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSH 235
+P++WP RD +W +N+ T L+ + M+ + E+ISF F G + Y
Sbjct: 141 VPIKWPKSRDEVWKANIPHTH---LAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIA 197
Query: 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295
IA M+ N+ +RT+LD+GCG SFGA+L + +++TM +A + +Q+Q L
Sbjct: 198 SIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFAL 257
Query: 296 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355
ERG+PA +G +K+LPYPS SF+ HC+RC +DW Q+DG+LLLE+DRVL+PGGYF ++S
Sbjct: 258 ERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSS 317
Query: 356 PLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGP 415
P +A+ +++EN K W + VE +CW + ++++TVVW+K CY R+PG+ P
Sbjct: 318 P----EAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGTQP 373
Query: 416 SICSKGNDVESPYYRPLQPCIGG-TRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEF 474
+C D ++ ++ CI +++ WP+R + LA +G + F
Sbjct: 374 PLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYSTDMF 433
Query: 475 AEDTENWKTAVGNFWSLLSPLIFSD 499
+DTE WK V ++W+L+S + S+
Sbjct: 434 EKDTELWKQQVDSYWNLMSSKVKSN 458
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
Identities = 135/381 (35%), Positives = 216/381 (56%)
Query: 128 CSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWP 182
C + +PC + + L L S + +RHC E + +CL+ PP Y+IP++WP
Sbjct: 82 CDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKIPIKWP 141
Query: 183 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQIAEMI 241
RD +W N+ T L+ + M+++ E+I+F F G + Y +A M+
Sbjct: 142 KSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIASMANML 198
Query: 242 GLRNESNFILAG--VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL 299
N N + G +RT LD+GCG SFG +L + E++TM +A + +Q+Q LERG+
Sbjct: 199 NFPN--NVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALERGI 256
Query: 300 PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359
PA +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DRVL+PGGYF ++SP
Sbjct: 257 PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSP--- 313
Query: 360 PQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICS 419
+A+ +++E+ + W + V +CW + +++++TV+W+K CY R+PG+ P +C+
Sbjct: 314 -EAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPPLCN 372
Query: 420 KGNDVESPYYRPLQPCIGGTRNR-RWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDT 478
+D ++ Y ++ CI + WP+R LA +G + F +DT
Sbjct: 373 SDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTDIFEKDT 432
Query: 479 ENWKTAVGNFWSLLSPLIFSD 499
E W+ V +W LLSP I SD
Sbjct: 433 ETWRQRVDTYWDLLSPKIQSD 453
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
Identities = 136/382 (35%), Positives = 217/382 (56%)
Query: 128 CSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWP 182
C + +PC + + L L S + +RHC E + +CL+ PP Y++P++WP
Sbjct: 79 CDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKVPIKWP 138
Query: 183 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQIAEMI 241
RD +W N+ T L+ + M+++ ++I+F F G + Y IA M
Sbjct: 139 KSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKY---IASMA 192
Query: 242 GLRNESNFIL--AG-VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298
+ N N +L G +RT+ D+GCG SFG +L S ++LTM +A + +Q+Q LERG
Sbjct: 193 NMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERG 252
Query: 299 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358
+PA +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DRVL+PGGYF ++SP
Sbjct: 253 IPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSP-- 310
Query: 359 NPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSIC 418
+A+ +++E+ + W + VE +CW++ +++++TV+W+K CY R+PG+ P +C
Sbjct: 311 --EAYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLC 368
Query: 419 SKGNDVESPYYRPLQPCIGGTRNR-RWIPIEERRNWPSRANLNKNELAVYGVHPEEFAED 477
ND ++ + ++ CI + WP+R LA +G F +D
Sbjct: 369 RSDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKD 428
Query: 478 TENWKTAVGNFWSLLSPLIFSD 499
TE W+ V +W LLSP I SD
Sbjct: 429 TELWRQRVDTYWDLLSPRIESD 450
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 2.4e-91, Sum P(2) = 2.4e-91
Identities = 126/369 (34%), Positives = 201/369 (54%)
Query: 125 LEFCSEDFENYVPCF-NESRNLALGYSN-GDEVDRHCGQELKQHCLVLPPVKYRIPLRWP 182
L+ C + +Y+PC NE L ++ G+ +RHC ++ CL+ PP Y+ P++WP
Sbjct: 143 LKLCDKTKIDYIPCLDNEEEIKRLNNTDRGENYERHCPKQ-SLDCLIPPPDGYKKPIQWP 201
Query: 183 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIF-DGVEDYSHQIAEMI 241
RD IW +NV T + V G + + E+++ F F G + Y QI++MI
Sbjct: 202 QSRDKIWFNNVPHT-RLVEDKGG--QNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMI 258
Query: 242 GLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPA 301
+ F + R LDIGCG SFGA L + T+ +A + +Q+Q LERG+PA
Sbjct: 259 P---DITFG-SRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPA 314
Query: 302 MIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361
M+ FA+++L YPS SF+M+HC+RC ++W + DGILLLEV+R+L+ GGYFVW + Q
Sbjct: 315 MVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAA-----Q 369
Query: 362 AFLRNKEN-QKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSK 420
++++N Q++W + D +CWEL+ ++ VW+K SCY SR+ G+ P +C
Sbjct: 370 PVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLCRP 429
Query: 421 GNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDTEN 480
+D + +Y ++PCI + + WP+R L+ + + + + E
Sbjct: 430 DDDPDDVWYVDMKPCITRLPDNGYGA--NVSTWPAR--LHDPPERLQSIQMDAYISRKEI 485
Query: 481 WKTAVGNFW 489
K A FW
Sbjct: 486 MK-AESRFW 493
|
|
| TAIR|locus:2076264 AT3G10200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 136/381 (35%), Positives = 208/381 (54%)
Query: 125 LEFCSEDFENYVPCFNES--RNL--ALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPL 179
+ C +F Y+PC N + L +L S ++++RHC E + CLV PP Y+IP+
Sbjct: 72 MNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPNDYKIPI 131
Query: 180 RWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS-FRSASLIFD-GVEDYSHQI 237
RWPT RD +W SNV T + G + + E+ Q F F G +Y ++
Sbjct: 132 RWPTSRDYVWRSNVNHTHLAQVKGG----QNWVHEQGQFWWFPGGGTHFKHGAAEYIQRL 187
Query: 238 AEMIGLRNESNFIL-AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296
M + NE+ + AGV +LD+GCG SF A+L + T+ A + +Q+Q LE
Sbjct: 188 GNM--MTNETGDLRSAGVVQVLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFALE 245
Query: 297 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356
RG+ AMI + A+KQLPYP+ SF+M+HC+RC VDW DGILL EV R+L+P G+FV++SP
Sbjct: 246 RGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSSP 305
Query: 357 LTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPS 416
P A+ ++KE W+ + + +CW+L+S++ +T +W K K C + S
Sbjct: 306 ---P-AYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLKQKAELKLIS 361
Query: 417 ICSKGNDVESPYYR-PLQPC--IGGTRNRRWIPIEERRN-WPSRANLNKNELAVYGVHPE 472
+C DV P ++ PL+ C I G R + ER + +P A L K G+ +
Sbjct: 362 LCDV-EDVLKPSWKVPLKDCVQISGQTEERPSSLAERLSAYP--ATLRK-----IGISED 413
Query: 473 EFAEDTENWKTAVGNFWSLLS 493
E+ DT W+ V ++W L++
Sbjct: 414 EYTSDTVFWREQVNHYWRLMN 434
|
|
| TAIR|locus:2150670 AT5G04060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 131/375 (34%), Positives = 205/375 (54%)
Query: 128 CSEDFENYVPCFNES--RNL--ALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWP 182
C F Y+PC N + + L +L S +E++RHC E + CLV PP Y+IP+RWP
Sbjct: 86 CPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKDYKIPIRWP 145
Query: 183 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS-FRSASLIFD-GVEDYSHQIAEM 240
T RD +W SNV T + G + + E+ Q+ F F G +Y ++ M
Sbjct: 146 TSRDYVWRSNVNHTHLAEVKGG----QNWVHEQGQLWWFPGGGTHFKHGAPEYIQRLGNM 201
Query: 241 IGLRNESNFIL-AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL 299
NE+ +L AGV +LD+GCG SF A+L + TM A + +Q+Q LERG+
Sbjct: 202 T--TNETGDLLSAGVEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQFALERGI 259
Query: 300 PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359
AMI + A+KQ+PYP+ SFDM+HC+RC VDW + DG+L+ EV+R+L+P GYFV+++P
Sbjct: 260 RAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMKEVNRLLRPNGYFVYSAP--- 316
Query: 360 PQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICS 419
P A+ ++K+ W+ + + +CW+L+S++ +T +W K +C +IC
Sbjct: 317 P-AYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDEACLRKNAELELITICG 375
Query: 420 KGNDVESPYYR-PLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDT 478
DV ++ PL+ C+ + NR+ P + R + L G+ +EF DT
Sbjct: 376 V-EDVSKASWKVPLRDCVDISENRQQKP----SSLTDRLSSYPTSLREKGISEDEFTLDT 430
Query: 479 ENWKTAVGNFWSLLS 493
W+ V +W L++
Sbjct: 431 NFWREQVNQYWELMN 445
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9C9Q8 | PMTT_ARATH | 2, ., 1, ., 1, ., - | 0.7180 | 0.9910 | 0.9663 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 667 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 1e-175 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 6e-05 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 7e-05 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-04 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 508 bits (1311), Expect = e-175
Identities = 211/546 (38%), Positives = 295/546 (54%), Gaps = 60/546 (10%)
Query: 134 NYVPCF--NESRNLALGYSNGDEVDRHC-GQELKQHCLVLPPVKYRIPLRWPTGRDVIWV 190
+Y+PC + + L + +RHC E K CLV PP Y+ P+ WP RD +W
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 191 SNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNF 249
+NV T G + + +E ++ F F G + Y +A+MI
Sbjct: 61 ANVPHTKLAEEKGG---QNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWG-- 115
Query: 250 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIA---NYEASGSQVQLTLERGLPAMIGSF 306
VRT LD+GCG SFGA+L S+++LTM A +EA QVQ LERG+PAM+G
Sbjct: 116 --GRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEA---QVQFALERGVPAMLGVL 170
Query: 307 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN 366
+++LPYPS SFDM HC+RC + W DGILLLEVDRVL+PGGYFV + P +
Sbjct: 171 GTRRLPYPSRSFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARD---E 227
Query: 367 KENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVES 426
++ Q+ W + ++LCW+LV+++ + +W+K SCY+ R+PG P +C +D ++
Sbjct: 228 EDLQEEWKAMEALAKSLCWKLVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDA 287
Query: 427 PYYRPLQPCI------GGTRNRRWIPIEERRNWPSRANLNK-----NELAVYGVHPEEFA 475
+Y P++ CI W+ WP R L + GV E F
Sbjct: 288 AWYVPMEACITPLPEVSHEVGGGWLE-----KWPER--LTAVPPRLASGQIGGVSAEAFK 340
Query: 476 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLE 535
DTE WK V + LL LI VRNV+DMNA FGGF +AL++
Sbjct: 341 ADTELWKRRVSKYKRLLKLLIDKGR---------------VRNVMDMNAGFGGFAAALID 385
Query: 536 KGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595
VWVMNVVP + LP+I DRG +G+ HDWCE F TYPRTYDL+HA+ L SL
Sbjct: 386 DP--VWVMNVVPVDSPDTLPVIYDRGLIGIYHDWCEPFSTYPRTYDLLHADHLFSLY--- 440
Query: 596 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSD--ER 653
+ RC+ DI E+DRILRP G VIIRD +++ + + ++W+ R+ + E E+
Sbjct: 441 KKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDKVKKIAKAMRWEVRITDTEDGPHDPEK 500
Query: 654 LLICQK 659
+LI QK
Sbjct: 501 ILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-06
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 258 LDIGCGYGSFGAHLFSKELLTMCIANY---EASGSQVQLTLER-GLPAMIGSFASKQLPY 313
LD+GCG G L ++ L A + S + L +R ++G LP+
Sbjct: 1 LDVGCGTG-----LLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAE--DLPF 53
Query: 314 PSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 352
P SFD +LH D ++ L E+ RVLKPGG V
Sbjct: 54 PDESFDVVVSSLVLHHLP---DPER----ALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-05
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 24/107 (22%)
Query: 257 ILDIGCGYGSFGAHL------------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 304
ILD+GCG G L SKE L + G +V+ ++
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVR--------FVVA 52
Query: 305 SFASKQLPYPSLSFDMLHCARCGVD--WDQKDGILLLEVDRVLKPGG 349
+ LP+ SFD++ CA +D ++ LL E R+L+PGG
Sbjct: 53 DA--RDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFA--S 308
+ +LD GCGYGS L ++ + + Y S Q ++ ER GL I F S
Sbjct: 1 KRVLDFGCGYGSDLIDL-AERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS 59
Query: 309 KQLPYPS-----LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360
+ P+P F+++H + D L + R LK GG+ V + N
Sbjct: 60 AKDPFPDTYDLVFGFEVIHHIK---DKMD----LFSNISRHLKDGGHLVLADFIANL 109
|
Length = 224 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM---IGSFAS 308
+LD+GCG G L K + + S ++ E G + G
Sbjct: 6 KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65
Query: 309 -KQLPYPSLSFDMLHCARCGVDWDQKDGILLL-EVDRVLKPGGYFVWTSP 356
QL SFD++ V D +L E+ RVLKPGG + + P
Sbjct: 66 LPQLQLEDNSFDVVISN--EVLNHLPDPDKVLEEIIRVLKPGGVLIVSDP 113
|
This family appears to be have methyltransferase activity. Length = 151 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 667 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.76 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.73 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.69 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.66 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.65 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.65 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.5 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.5 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.5 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.49 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.49 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.48 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.48 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.48 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.47 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.47 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.46 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.46 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.44 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.42 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.41 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.41 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.41 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.39 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.39 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.38 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.36 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.36 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.35 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.35 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.35 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.34 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.34 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.32 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.29 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.28 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.27 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.26 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.25 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.24 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.24 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.24 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.23 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.21 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.21 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.21 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.2 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.19 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.18 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.16 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.16 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.16 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.15 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.14 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.14 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.13 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.12 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.11 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.08 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.08 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.07 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.07 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.07 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.05 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.03 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.03 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.01 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.0 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.0 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.0 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.99 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.99 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.98 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.98 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.98 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.97 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.96 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.95 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.94 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.94 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.92 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.92 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.91 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.91 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.9 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.9 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.9 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.9 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.89 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.88 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.87 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.87 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.85 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.84 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.83 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.83 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.82 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.8 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.79 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.78 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.77 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.76 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.74 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.7 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.69 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.68 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.67 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.66 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.65 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.64 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.63 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.62 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.62 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.62 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.62 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.62 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.59 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.57 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.57 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.57 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.57 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.56 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.56 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.52 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.5 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.5 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.49 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.48 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.47 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.42 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.42 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.41 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.4 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.38 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.38 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.37 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.37 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.33 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.33 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.33 | |
| PLN02366 | 308 | spermidine synthase | 98.33 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.33 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.32 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.26 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.26 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.23 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.22 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.2 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.16 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.15 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.15 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.1 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.09 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.08 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.08 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.04 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.01 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.01 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.98 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.95 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.95 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 97.9 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.9 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.88 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 97.85 | |
| PLN02476 | 278 | O-methyltransferase | 97.84 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.84 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.84 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.84 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.82 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 97.82 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.81 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.81 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 97.81 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.8 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.79 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.79 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.79 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.79 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.78 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 97.76 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.76 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 97.76 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.75 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 97.73 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 97.7 | |
| PLN02823 | 336 | spermine synthase | 97.69 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.66 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.66 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 97.66 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.64 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 97.63 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.61 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 97.6 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.6 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.6 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 97.58 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.57 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.56 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 97.56 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 97.55 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 97.5 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 97.48 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 97.48 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.46 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.46 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.44 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 97.43 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.42 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.41 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 97.4 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 97.4 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.39 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.38 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.37 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 97.36 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 97.33 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.32 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.32 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 97.32 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.3 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.28 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.27 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.27 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.24 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 97.23 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.23 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 97.22 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.21 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.21 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.2 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 97.19 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.19 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.18 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 97.16 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 97.13 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.11 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.11 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 97.06 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.06 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.05 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.05 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 97.01 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 96.98 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 96.96 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.91 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.89 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.87 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 96.85 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.85 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 96.82 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 96.81 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.81 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 96.8 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 96.78 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 96.78 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 96.78 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 96.76 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 96.69 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 96.69 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 96.65 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.64 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 96.62 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 96.62 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 96.62 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 96.61 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.61 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 96.59 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.58 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.52 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 96.51 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.51 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 96.5 | |
| PRK04266 | 226 | fibrillarin; Provisional | 96.48 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.46 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 96.42 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.41 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 96.4 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.4 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.37 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 96.34 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.32 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 96.3 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 96.23 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 96.22 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 96.21 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.2 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 96.18 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.17 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.15 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 96.14 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 96.08 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 96.04 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.02 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.01 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.99 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 95.98 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 95.96 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 95.93 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.92 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.89 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 95.89 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 95.88 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 95.87 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.86 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.86 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 95.8 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 95.78 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.77 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.75 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 95.73 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 95.72 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 95.72 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.63 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 95.63 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.61 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.54 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 95.47 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.46 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 95.29 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 95.26 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 95.13 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 95.07 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 94.9 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 94.76 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 94.75 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 94.74 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 94.74 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 94.69 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.68 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 94.63 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.48 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 94.48 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 94.45 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 94.38 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.28 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.21 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.2 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 94.08 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 94.05 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 94.02 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 93.87 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 93.77 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 93.71 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 93.66 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 93.66 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 93.61 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 93.59 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 93.56 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 93.44 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 93.3 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 93.28 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 93.18 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 93.1 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 93.06 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 92.57 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 92.27 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 91.82 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 91.42 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.41 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 91.19 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 90.47 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 90.3 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 90.26 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 90.17 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 90.05 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 89.93 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 89.76 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 89.54 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 88.93 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 88.92 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 88.81 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 88.68 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 88.67 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.57 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 88.53 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 88.21 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 88.15 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 88.11 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 87.66 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 87.6 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 87.56 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 87.51 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 87.49 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 86.98 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 86.6 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 86.53 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 86.42 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 85.95 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 85.95 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 85.95 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 85.48 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 85.41 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 84.62 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 84.59 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 83.86 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 83.85 | |
| PLN02366 | 308 | spermidine synthase | 83.79 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 83.63 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 83.11 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 82.35 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 82.2 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 82.0 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 81.99 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 81.01 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 80.81 | |
| cd04789 | 102 | HTH_Cfa Helix-Turn-Helix DNA binding domain of the | 80.54 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 80.4 | |
| PLN02476 | 278 | O-methyltransferase | 80.27 | |
| PHA01634 | 156 | hypothetical protein | 80.07 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-140 Score=1142.70 Aligned_cols=496 Identities=45% Similarity=0.901 Sum_probs=468.7
Q ss_pred CccccCCchhhhhc--ccccccccccCCCC-CCccccccCCCCCCCCCCCCCCCcccccccCCcchhHhhhhcccccccc
Q 005959 134 NYVPCFNESRNLAL--GYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 210 (667)
Q Consensus 134 ~~~pC~d~~~~~~~--~~~~~~~~er~c~~-~~r~rcL~~~p~gy~~P~~WP~srd~~W~~Nvp~~~~~~ls~~k~~q~W 210 (667)
|||||+|+++++++ .+++++|+|||||+ +++.+||+|+|+|||.|++||+|||++||+|+||++ |+++|+.|||
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~---L~~~K~~qnW 77 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTK---LAEEKADQNW 77 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchH---Hhhhcccccc
Confidence 79999999999999 89999999999999 679999999999999999999999999999999999 7789999999
Q ss_pred ccccccccccccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH
Q 005959 211 MMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 289 (667)
Q Consensus 211 ~~~ek~~~~F~~~~~~y-d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ 289 (667)
++.+++.+.|++++++| +++.+|+++|.++++... .....+++||||||+|+|+++|.++++.++++++.|.++.
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~----~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK----WGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccc----cCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 99999999999999999 789999999999998621 1236789999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHH
Q 005959 290 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 369 (667)
Q Consensus 290 ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~ 369 (667)
++++|.+||+++.+..+...+|||++++||+|||+.|++.|.++...+|.|++|+|||||+|+++.|..+. ..+.+.
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~---r~~~~~ 230 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQ---RTDEDL 230 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccc---cchHHH
Confidence 99999999999999888889999999999999999999999988889999999999999999999998772 244567
Q ss_pred HhhhhhhhhhhhccceEEeeccCceEEEeecccccccccCCCCCCCCcCCCCCCCCCCcccccccccccCCCC-cccCCc
Q 005959 370 QKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNR-RWIPIE 448 (667)
Q Consensus 370 ~~~W~~ie~l~~~~~W~ll~~~~~~~IwqK~~~~~C~~~R~~~~~p~lC~~~~d~~~~wY~~l~~Ci~~~~~~-~~~~~~ 448 (667)
...|..|+.+++++||++++++++++|||||.+++||.+|+....|++|+.++|++++||+||++||+++|.. .++.++
T Consensus 231 ~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~ 310 (506)
T PF03141_consen 231 EEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGG 310 (506)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCccccccccc
Confidence 7899999999999999999999999999999999999999998889999999999999999999999999975 466788
Q ss_pred ccCCCCcccccCCcccee---cccCccccccchhhhHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccc
Q 005959 449 ERRNWPSRANLNKNELAV---YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAH 525 (667)
Q Consensus 449 ~~~~WP~rl~~~~~~l~~---~~~~~~~f~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~ 525 (667)
.+++||+||+++|+||.. .|.+++.|.+|+++|+++|++|++++... +.+++||||||||||
T Consensus 311 ~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~---------------i~~~~iRNVMDMnAg 375 (506)
T PF03141_consen 311 WLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLA---------------IKWGRIRNVMDMNAG 375 (506)
T ss_pred CCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhccc---------------ccccceeeeeeeccc
Confidence 999999999999999975 88999999999999999999999988643 357899999999999
Q ss_pred chhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCCCccccccccCccccccCCCCCCCcchhh
Q 005959 526 FGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIF 605 (667)
Q Consensus 526 ~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l 605 (667)
||||||||.+ +|||||||||++++|||++||||||||+||||||+|||||||||||||+++||.++ +||+|++||
T Consensus 376 ~GGFAAAL~~--~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~---~rC~~~~il 450 (506)
T PF03141_consen 376 YGGFAAALID--DPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYK---DRCEMEDIL 450 (506)
T ss_pred ccHHHHHhcc--CCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhc---ccccHHHHH
Confidence 9999999987 89999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred eeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeeccCC--CccEEEEEc
Q 005959 606 TEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS--DERLLICQK 659 (667)
Q Consensus 606 ~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~li~~K 659 (667)
+||||||||||++||||+.+++++|++|+++|+|+++++++|+++ +|+||||||
T Consensus 451 lEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 451 LEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999999999999999999986 699999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=379.55 Aligned_cols=199 Identities=23% Similarity=0.354 Sum_probs=176.4
Q ss_pred ccccccCCCCcccCCcccCCCCccc------ccCCccceeccc---------CccccccchhhhHHHHHHHHHhhccccc
Q 005959 433 QPCIGGTRNRRWIPIEERRNWPSRA------NLNKNELAVYGV---------HPEEFAEDTENWKTAVGNFWSLLSPLIF 497 (667)
Q Consensus 433 ~~Ci~~~~~~~~~~~~~~~~WP~rl------~~~~~~l~~~~~---------~~~~f~~d~~~w~~~v~~Y~~~l~~~~~ 497 (667)
..|++|+|.+|++|+ +||++. |+++++|+.++. +...|++++++|+++|.+|++.|.+|+.
T Consensus 35 ~~CLVp~P~gYk~P~----~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~ 110 (506)
T PF03141_consen 35 LRCLVPPPKGYKTPI----PWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIP 110 (506)
T ss_pred CccccCCCccCCCCC----CCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHhh
Confidence 899999999999999 999966 788888876543 4578999999999999999999999983
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc---cccccccccCC
Q 005959 498 SDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAF 573 (667)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl---ig~~~~~c~~f 573 (667)
.. ...+.||++||+|||+|||||+|++ ++|.+|+++|.+.| +|+|||+|||+ ||++.+...||
T Consensus 111 ~~-----------~~~g~iR~~LDvGcG~aSF~a~l~~--r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPf 177 (506)
T PF03141_consen 111 LI-----------KWGGGIRTALDVGCGVASFGAYLLE--RNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPF 177 (506)
T ss_pred cc-----------ccCCceEEEEeccceeehhHHHHhh--CCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccC
Confidence 21 2347899999999999999999998 99999999999999 99999999996 77777888888
Q ss_pred CCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC----------HHHHHHHHHHHhhCCCeeEE
Q 005959 574 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT----------ARLIESARALTTRLKWDARV 643 (667)
Q Consensus 574 ~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----------~~~~~~~~~~~~~~~W~~~~ 643 (667)
|. +|||||||++|.+.|+. .- ..+|+|+|||||||||||++.. .++|++|+++|++|||+.++
T Consensus 178 p~--~~fDmvHcsrc~i~W~~---~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 178 PS--NAFDMVHCSRCLIPWHP---ND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred Cc--cchhhhhcccccccchh---cc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhe
Confidence 87 99999999999999983 22 3699999999999999999633 57899999999999999999
Q ss_pred eeeccCCCccEEEEEccc
Q 005959 644 IEIESNSDERLLICQKPF 661 (667)
Q Consensus 644 ~~~~~~~~~~~li~~K~~ 661 (667)
.+ ++++|||||.
T Consensus 251 ~~------~~~aIwqKp~ 262 (506)
T PF03141_consen 251 EK------GDTAIWQKPT 262 (506)
T ss_pred ee------CCEEEEeccC
Confidence 85 7899999985
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-18 Score=190.04 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=82.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeeccc--CCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK--QLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~--~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..|++.+ ..++++|.++.|++.+++.. .++.+.+.++. .+++++++||+|+|..+++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 3689999999999999999874 36899999999998876532 24556666764 5788889999999998855
Q ss_pred ccccC-HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 329 DWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 329 ~~~~d-~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
|+.++ ...+++++.|+|||||++++.+...
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 54332 3689999999999999999987654
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=169.15 Aligned_cols=107 Identities=23% Similarity=0.249 Sum_probs=95.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC-----ceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~-----~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
++.+|||||||||.++..+++..- ...|+++|+|+.|++.|+++... +.++.+|+++|||+|++||+|.+++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg- 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG- 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh-
Confidence 358999999999999999998843 67899999999999999987543 67889999999999999999999998
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCCChh
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~ 361 (667)
++..++.+++|+|++|||||||.+++.+......
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 7777899999999999999999999998766543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.6e-17 Score=165.77 Aligned_cols=106 Identities=23% Similarity=0.275 Sum_probs=80.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----CCceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----l~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
.+.+|||+|||||.++..++++......|+++|+|+.|++.|+++. .++.+.++|++++||++++||+|+|++.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg- 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG- 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh-
Confidence 3479999999999999999887445568999999999999998652 2678899999999999999999999998
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
++..++..++|+|++|+|||||.+++.+....
T Consensus 126 lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 66667889999999999999999999887543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-16 Score=159.23 Aligned_cols=135 Identities=19% Similarity=0.276 Sum_probs=110.9
Q ss_pred ccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC
Q 005959 219 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298 (667)
Q Consensus 219 ~F~~~~~~yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg 298 (667)
.|++.+..|+..+..++.+++.+..... .....+|||+|||+|.++..+++.+ ..++++|+|+.|++.|+++.
T Consensus 12 ~F~~aa~~Y~~~~~~q~~~a~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 12 AFGRAAAHYEQHAELQRQSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHhcC----ccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC
Confidence 6888888887766666666655432211 1235789999999999999998764 46899999999999999886
Q ss_pred CCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChh
Q 005959 299 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (667)
Q Consensus 299 l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~ 361 (667)
....+.++|++.+|+++++||+|+++.+ ++|.+++..+|.++.++|||||.++++.+.....
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 146 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL 146 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence 5566788899999999999999999977 7888899999999999999999999999876553
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=159.03 Aligned_cols=107 Identities=20% Similarity=0.151 Sum_probs=90.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--------CCceEEeecccCCCCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--------l~~~~~~~da~~Lpfpd~sFDlV~~s 324 (667)
+..+|||||||+|.++..++++......|+++|+|++|++.|+++. .++.+.+++++.+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 3479999999999999998876222357999999999999987652 24668889999999999999999999
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
++ +|+.+++..+++|+.|+|||||++++.+.....
T Consensus 153 ~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 153 YG-LRNVVDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred cc-cccCCCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 88 666778899999999999999999999876543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-16 Score=134.24 Aligned_cols=93 Identities=30% Similarity=0.463 Sum_probs=78.9
Q ss_pred EEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC--ceEEeecccCCCCCCCCccEEEecccccccccCHH
Q 005959 258 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG 335 (667)
Q Consensus 258 LDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~--~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~ 335 (667)
||+|||+|.++..|+++ ...+++++|+++++++.++++... ..+..++.+.+|+++++||+|++..+ +++.++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSV-LHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESH-GGGSSHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccc-eeeccCHH
Confidence 89999999999999998 356799999999999999887543 34888899999999999999999988 55558888
Q ss_pred HHHHHHHhcccCCeEEEE
Q 005959 336 ILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 336 ~~L~Ei~RvLKPGG~Lvi 353 (667)
++++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=129.15 Aligned_cols=98 Identities=30% Similarity=0.577 Sum_probs=81.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..|++.+. .++++|+++.+++. ........+....++++++||+|+|+.+ +++.+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~-l~~~~ 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDV-LEHLP 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESS-GGGSS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHH-Hhhcc
Confidence 347999999999999999988864 69999999999988 2333443444456678899999999988 66677
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
++..+|+++.++|||||+++++++...
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999999999999999999999754
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=143.35 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=85.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..|++.. +...++++|+|+.|++.|++++ +.+..+|++.++ ++++||+|+|+.+ +||.+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNAA-LQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEehh-hhhCC
Confidence 34799999999999999998873 3457999999999999998875 456667877774 5679999999987 77788
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++..+++++.++|||||++++..+.
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 8899999999999999999998764
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=138.03 Aligned_cols=106 Identities=23% Similarity=0.333 Sum_probs=91.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
.+.+|||||||+|.++..+++.+ ....++++|.++.+++.++++.. ++.+..++...+++++++||+|++..+ +|+.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~~~ 111 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA-LQWC 111 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-hhhc
Confidence 34789999999999999999885 34568999999999998887643 456777888999999999999999988 7777
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.++..++.++.++|+|||.++++++....
T Consensus 112 ~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 112 DDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 88889999999999999999999886544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=139.50 Aligned_cols=108 Identities=20% Similarity=0.173 Sum_probs=91.2
Q ss_pred cccCCCEEEEeCCCCchHHHHHhhcCCc-----eeEEEEecCCHHHHHHHHHcC----C----CceEEeecccCCCCCCC
Q 005959 250 ILAGVRTILDIGCGYGSFGAHLFSKELL-----TMCIANYEASGSQVQLTLERG----L----PAMIGSFASKQLPYPSL 316 (667)
Q Consensus 250 ~~~~~~~VLDIGCGtG~~t~~La~~g~~-----~~sV~gvD~S~~ml~~A~erg----l----~~~~~~~da~~Lpfpd~ 316 (667)
.+....++||++||||..+..+.++--. ...|+..|+++.|++.+++|. + ...++.+|++.|||+++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 3556799999999999999999887222 267999999999998887663 2 25688899999999999
Q ss_pred CccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 317 SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 317 sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+||+.+.++. +....+++++|+|++|||||||+|.+-++..
T Consensus 177 s~D~yTiafG-IRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 177 SFDAYTIAFG-IRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred cceeEEEecc-eecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 9999999988 5555788999999999999999999888754
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-14 Score=142.32 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=91.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+.+|||||||.|.++..||+.| .+|+++|.++.+|+.|+.+ ++.+.+.+..++++....++||+|+|..+ +
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV-l 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV-L 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhH-H
Confidence 34799999999999999999997 5699999999999988744 56666777788888777789999999999 5
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCChh
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~ 361 (667)
+|.++++.+++++.+.+||||.+++++++....
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 557899999999999999999999999986553
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=135.97 Aligned_cols=204 Identities=18% Similarity=0.256 Sum_probs=145.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|.|+|||+|..|..|+++ ++...|+|+|.|++|++.|+++.++..|..+|+..+. ++..+|+++++.+ ++|.+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv-lqWlp 106 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV-LQWLP 106 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhh-hhhcc
Confidence 4589999999999999999988 6778899999999999999999999999989987774 4568999999966 99999
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeeccCceEEEeecc-cccccccCCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTS-KASCYSSRKP 411 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~~~~~~IwqK~~-~~~C~~~R~~ 411 (667)
+...+|..+...|.|||.|.+..|..... .....|++.++..-|......... -+++. ...-|-+.-
T Consensus 107 dH~~ll~rL~~~L~Pgg~LAVQmPdN~de---------psH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~lL- 174 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLAVQMPDNLDE---------PSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYELL- 174 (257)
T ss_pred ccHHHHHHHHHhhCCCceEEEECCCccCc---------hhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHHh-
Confidence 99999999999999999999998754321 223456666666666555443322 13332 222332221
Q ss_pred CCCCCcCCCCCCCCCCcccccccccccCCCCcccCCcccCCCCcccccCCccceecccCccccccchhhhHHHHHHHHHh
Q 005959 412 GSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSL 491 (667)
Q Consensus 412 ~~~p~lC~~~~d~~~~wY~~l~~Ci~~~~~~~~~~~~~~~~WP~rl~~~~~~l~~~~~~~~~f~~d~~~w~~~v~~Y~~~ 491 (667)
.+.-|. -+.+++.||++|..-- +--.|+.+..+.||=++| |.+.|+.-...|..+
T Consensus 175 --a~~~~r-vDiW~T~Y~h~l~~a~---aIvdWvkgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~~ 229 (257)
T COG4106 175 --APLACR-VDIWHTTYYHQLPGAD---AIVDWVKGTGLRPYLDRL-------------------DEEERQRFLDRYLAL 229 (257)
T ss_pred --Ccccce-eeeeeeeccccCCCcc---chhhheeccccceecccc-------------------CHHHHHHHHHHHHHH
Confidence 133443 5678889998654321 112354444444443333 566788888999998
Q ss_pred hcccc
Q 005959 492 LSPLI 496 (667)
Q Consensus 492 l~~~~ 496 (667)
|..-.
T Consensus 230 l~~aY 234 (257)
T COG4106 230 LAEAY 234 (257)
T ss_pred HHHhC
Confidence 87654
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=146.36 Aligned_cols=103 Identities=21% Similarity=0.291 Sum_probs=87.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+.+|||||||+|.++..|++.. ...|+++|+|+.|++.++++ ++ ++.+.++|+..+|+++++||+|+|..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 45789999999999999999863 35799999999999887653 33 467888899999999999999999988
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+. +.++...+++++.|+|||||.|++.+...
T Consensus 196 ~~-h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 196 GE-HMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hh-ccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 44 45678899999999999999999988643
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=146.20 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=88.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..|++.+ ..|+++|.++.|++.|+++. ..+.+.+++++.+++++++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 45799999999999999998875 46899999999999987652 1466788888899988899999999998
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+++..++..+++++.++|||||.++++++...
T Consensus 208 -LeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 208 -IEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred -HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 55567889999999999999999999988654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.4e-13 Score=135.99 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=88.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..+++.......++++|.++.|++.|+++ +. ++.+..+++..+++++++||+|++..+ +
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~-l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG-L 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc-c
Confidence 47999999999999999987632345799999999999888754 22 456777888889998899999999977 6
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
++.++...+++++.++|+|||++++.++...
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 6778888999999999999999999876543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=138.91 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=78.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
..+|||||||||.++..+++.. ...|+++|+|++|++.|+++. .+.+++++.+||++++||+|+|+++ +|+.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~-l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFA-LHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecCh-hhccCC
Confidence 4799999999999999998873 247999999999999998763 3467789999999999999999988 667788
Q ss_pred HHHHHHHHHhcccCC
Q 005959 334 DGILLLEVDRVLKPG 348 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPG 348 (667)
++++++|++|+|||.
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999999999995
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.1e-13 Score=139.15 Aligned_cols=105 Identities=25% Similarity=0.324 Sum_probs=87.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc--eeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELL--TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~--~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
...+|||||||+|.++..+++.... ...++++|+|+.|++.|.++..++.+.++++..+|+++++||+|++.++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 3468999999999999999875211 2368999999999999988877788888999999999999999998754
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhh
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 365 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr 365 (667)
...+.|+.|+|||||+|++..+...+..+++
T Consensus 161 ----~~~~~e~~rvLkpgG~li~~~p~~~~l~el~ 191 (272)
T PRK11088 161 ----PCKAEELARVVKPGGIVITVTPGPRHLFELK 191 (272)
T ss_pred ----CCCHHHHHhhccCCCEEEEEeCCCcchHHHH
Confidence 1246899999999999999999877655443
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-13 Score=139.76 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=93.0
Q ss_pred HHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CceEEeecccC
Q 005959 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQ 310 (667)
Q Consensus 234 ~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~ 310 (667)
...+.+.+...+ ..+|||||||+|..+..+++.. ...|+++|+|+.|++.|+++.. .+.+..+|+..
T Consensus 41 ~~~~l~~l~l~~--------~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~ 110 (263)
T PTZ00098 41 TTKILSDIELNE--------NSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILK 110 (263)
T ss_pred HHHHHHhCCCCC--------CCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCccc
Confidence 344555554443 3799999999999999998652 3579999999999999987642 46677888888
Q ss_pred CCCCCCCccEEEecccccccc-cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 311 LPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 311 Lpfpd~sFDlV~~s~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.|+++++||+|++..+++|+. .+...+++++.++|||||+|+++++..
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999999999999988766654 367789999999999999999998754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.1e-13 Score=136.49 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=87.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..+++.. ....++++|+|+.|++.|+++..++.+..+|+..+. ++++||+|+|+.+ +||..
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANAS-LQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccC-hhhCC
Confidence 34799999999999999998763 446799999999999999888666777778877665 4569999999987 77888
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+...+++++.++|||||.+++..+.
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 8889999999999999999998653
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=136.08 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=86.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC-CCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp-fpd~sFDlV~~s~ 325 (667)
.+.+|||+|||+|.++..|++.+ ..|+++|+|+.|++.|+++ ++ ++.+.++++..++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45799999999999999999985 4689999999999988765 32 3567777877764 6678999999998
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+ +++.+++..++.++.++|||||++++..+...
T Consensus 121 v-l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 121 V-LEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred H-HHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 8 66777888999999999999999999876543
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-13 Score=140.20 Aligned_cols=199 Identities=18% Similarity=0.225 Sum_probs=129.8
Q ss_pred cccccccccccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH
Q 005959 210 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 289 (667)
Q Consensus 210 W~~~ek~~~~F~~~~~~yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ 289 (667)
|++...+...+-+.+.||-...+ ++.+++.......-......++||||+|.|..|..|+.. ...|++.+.|..
T Consensus 54 ~f~S~T~iNG~LgRG~MFvfS~~---Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~ 127 (265)
T PF05219_consen 54 WFMSKTDINGILGRGSMFVFSEE---QFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPP 127 (265)
T ss_pred HHHhHHhHhhhhcCCcEEEecHH---HHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhh---cceEEeecCCHH
Confidence 44444455578888889865544 333333322110001134578999999999999999876 456899999999
Q ss_pred HHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHH
Q 005959 290 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 369 (667)
Q Consensus 290 ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~ 369 (667)
|....+++|..+. +...+.-.+.+||+|.|.++ +.-.++|..+|+++++.|+|+|+++++...+.. +..|.
T Consensus 128 Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNv-LDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~----pyVE~ 198 (265)
T PF05219_consen 128 MRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNV-LDRCDRPLTLLRDIRRALKPNGRLILAVVLPFR----PYVEF 198 (265)
T ss_pred HHHHHHhCCCeEE----ehhhhhccCCceEEEeehhh-hhccCCHHHHHHHHHHHhCCCCEEEEEEEeccc----ccEEc
Confidence 9999999986432 33444444568999999988 777788999999999999999999999866543 22222
Q ss_pred Hh-hhhhhhhhhhcc--ceEEeeccCceEEEeecccccccccCCCCCCCCcCCCCCCCCCCccc
Q 005959 370 QK-RWNFVRDFVENL--CWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYR 430 (667)
Q Consensus 370 ~~-~W~~ie~l~~~~--~W~ll~~~~~~~IwqK~~~~~C~~~R~~~~~p~lC~~~~d~~~~wY~ 430 (667)
-. .|....+..+-. .|+..+.. .+ +......++-....+.||+|+ +|...+||+
T Consensus 199 ~~g~~~~P~e~l~~~g~~~E~~v~~---l~--~v~~p~GF~v~~~tr~PYLcE--GD~~~~~Y~ 255 (265)
T PF05219_consen 199 GGGKSNRPSELLPVKGATFEEQVSS---LV--NVFEPAGFEVERWTRLPYLCE--GDLYQSYYV 255 (265)
T ss_pred CCCCCCCchhhcCCCCCcHHHHHHH---HH--HHHHhcCCEEEEEeccCcccc--CcccCceEE
Confidence 11 343333332222 22221111 11 222334444455666799999 889999998
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.8e-13 Score=125.36 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=86.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--CCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--fpd~sFDlV~~s~ 325 (667)
...+|||+|||+|.++..|++...+...++++|.++.|++.|+++ +. ++.+.+.|+.+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 357999999999999999995423456799999999999998763 44 4778889998887 66 7999999997
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+ +++..+...+++++.++|++||.+++.++.
T Consensus 82 ~-l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 V-LHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp T-GGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred c-hhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 7 577778889999999999999999999886
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=132.51 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=83.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC-CceeEEEEecCCHHHHHHHHHc------CCCceEEeecccCCCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g-~~~~sV~gvD~S~~ml~~A~er------gl~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
...+|||||||+|.++..++++. .+...++++|+|+.|++.|+++ ..++.+..+++..++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 34689999999999999998752 2356799999999999998765 22457788888888876 489999998
Q ss_pred ccccccc--CHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 326 CGVDWDQ--KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 326 ~ll~~~~--d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+ +|+.+ +...++++++|+|||||.|+++++...
T Consensus 131 ~-l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 131 T-LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred c-hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 8 45443 346799999999999999999987543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=128.29 Aligned_cols=103 Identities=27% Similarity=0.373 Sum_probs=87.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+|||+|||+|.++..+++.......++++|.++.+++.++++ ...+.+...++..+++++++||+|++..+ ++
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-~~ 98 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV-LQ 98 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech-hh
Confidence 37999999999999999988642346799999999999998876 33466777888888898899999999988 55
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+..++..+++++.++|||||++++.++.
T Consensus 99 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 99 HLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 5678889999999999999999998864
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=116.41 Aligned_cols=101 Identities=21% Similarity=0.261 Sum_probs=78.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecc-cCCCCCCCCccEEEecc-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFAS-KQLPYPSLSFDMLHCAR- 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da-~~Lpfpd~sFDlV~~s~- 325 (667)
..+|||||||+|.++..+++.. ....++++|.|+.|++.|+++. .++.+.+.|+ ...... +.||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 4789999999999999999931 2456999999999999887653 4667788887 333333 4699999998
Q ss_pred cccccc--cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CGVDWD--QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~ll~~~--~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+..++. ++...+++++.+.|+|||+|++.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 433233 3456899999999999999999763
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-12 Score=127.59 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=77.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..|++++. +|+++|.|+.|++.++++ ++. +.+..+|...++++ ++||+|+|+.+++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchh
Confidence 37899999999999999999863 689999999999877643 332 55666777777775 5799999998844
Q ss_pred cccc-CHHHHHHHHHhcccCCeEEEEEe
Q 005959 329 DWDQ-KDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 329 ~~~~-d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
++.+ +...++.++.++|||||++++..
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3332 34689999999999999966543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-12 Score=125.33 Aligned_cols=98 Identities=15% Similarity=0.285 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
+.+|||+|||+|.++..|++++ ..|+++|.|+.|++.+++ .++++.+..++....+++ ++||+|+|+.++++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 3689999999999999999986 368999999999987653 355666666676666665 58999999987444
Q ss_pred cc-cCHHHHHHHHHhcccCCeEEEEEe
Q 005959 330 WD-QKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 330 ~~-~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.. ++...+++++.++|||||++++.+
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 33 334689999999999999966654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.7e-13 Score=116.85 Aligned_cols=93 Identities=25% Similarity=0.402 Sum_probs=74.1
Q ss_pred EEEeCCCCchHHHHHhhcC--CceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 257 ILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 257 VLDIGCGtG~~t~~La~~g--~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
|||+|||+|..+..+++.. -....++++|+|++|++.++++. .++.+.++|+.++++.+++||+|+|....+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999773 12368999999999999988764 78899999999999999999999996553444
Q ss_pred ccC--HHHHHHHHHhcccCCe
Q 005959 331 DQK--DGILLLEVDRVLKPGG 349 (667)
Q Consensus 331 ~~d--~~~~L~Ei~RvLKPGG 349 (667)
..+ ...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 433 3679999999999998
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-12 Score=135.45 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=83.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH--Hc----CCCceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~--er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+.+|||||||+|.++..+++.+.. .|+|+|+|+.|+..++ ++ ..++.+..++++.+|+ +++||+|+|..+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v- 198 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV- 198 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh-
Confidence 479999999999999999988643 5999999999986432 22 2356778888999998 789999999988
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+++..++..+|++++++|+|||.|++.+..
T Consensus 199 l~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 199 LYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred hhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 555678889999999999999999998653
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-12 Score=129.33 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=81.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
...+|||||||+|..+..+++. ..+...++++|+|+.|++.|+++ +. ++.+.++++..+|++ .||+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 3478999999999999888763 12456799999999999998765 22 466778888888775 499999998
Q ss_pred cccccccC--HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 326 CGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 326 ~ll~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+ +|+.++ ...+++++.++|||||.|++++...
T Consensus 134 ~-l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 134 T-LQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred H-HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 7 444433 2579999999999999999998543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.9e-12 Score=140.94 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=87.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
...+|||||||+|..+..|++.. ...++++|+|+.|++.|+++. ..+.+..+|...+++++++||+|+|..+ +
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~-l 342 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT-I 342 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCc-c
Confidence 45799999999999999998762 357999999999999987652 2456778888889999899999999988 4
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++.+++..++++++|+|||||.++++++..
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 555788899999999999999999998754
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-12 Score=135.66 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=86.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
..+|||||||+|.++..+++.. ....++++|.|+.|++.|+++. .++.+..++++.+++++++||+|+++.+ +++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~-L~~~ 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGS-IEYW 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcCh-hhhC
Confidence 4799999999999999888752 2357999999999999988763 2456778899999999999999999987 5556
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++...+|+++.|+|||||.+++.++.
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 67889999999999999999987654
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-12 Score=126.79 Aligned_cols=104 Identities=19% Similarity=0.287 Sum_probs=85.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCCce-EEeecccCCC-CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAM-IGSFASKQLP-YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~~~-~~~~da~~Lp-fpd~sFDlV~~s~~ 326 (667)
...|||||||||..-.++--. +..+|+.+|+++.|-+++.++ ..++. ++.++.+++| .+++|+|+|+|..+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 356899999999887766533 456799999999998876543 33444 7889999999 89999999999998
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+.. ..++.+.|+|+.|+|||||++++.+++...
T Consensus 155 LCS-ve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 155 LCS-VEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred Eec-cCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 554 578889999999999999999999987654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-12 Score=130.28 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=86.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
...+|||||||+|..+..+++.......|+++|.++.|++.|+++ +. ++.+..++++.+++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v- 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV- 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc-
Confidence 347999999999998877766522335799999999999998864 33 456777888999999999999999866
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++.++...+++++.|+|||||+|++++...
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 6777788889999999999999999987643
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=130.98 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=80.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH--c----CCCceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--R----GLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e--r----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+++|||||||+|.++..++..+. ..|+|+|.|+.|+..+.. + ...+.+..++++.+|.. .+||+|+|..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 347999999999999999988864 368999999999865421 1 12445666778888865 48999999988
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++| ..++..+|++++++|||||.|++.+..
T Consensus 198 L~H-~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 198 LYH-RKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred hhc-cCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 554 578889999999999999999998654
|
Known examples to date are restricted to the proteobacteria. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-12 Score=115.58 Aligned_cols=92 Identities=28% Similarity=0.360 Sum_probs=58.3
Q ss_pred EEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCceEEeecccCCC--CCCCCccEEEeccccccc
Q 005959 258 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLP--YPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 258 LDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~Lp--fpd~sFDlV~~s~~ll~~ 330 (667)
||||||+|.++..++++. +...++++|+|+.|++.++++ . .............. ...++||+|+++.+ +||
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v-l~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV-LHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T-TS-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh-Hhh
Confidence 799999999999999874 678899999999999766554 1 12222322222221 12259999999988 555
Q ss_pred ccCHHHHHHHHHhcccCCeEE
Q 005959 331 DQKDGILLLEVDRVLKPGGYF 351 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~L 351 (667)
.++...+++.+.++|||||.|
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 588899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-11 Score=121.42 Aligned_cols=100 Identities=16% Similarity=0.052 Sum_probs=81.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ- 332 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~- 332 (667)
..+|||||||+|.++..|++.. ....++|+|+|+.|++.|+++...+.+.++++.. |+++++||+|+++.+++|+.+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHH
Confidence 4689999999999999998762 2457999999999999998865556677778777 899999999999998666643
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+..++++++.|++ ++++++.+..
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEee
Confidence 2467999999998 5788887753
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-11 Score=140.29 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=84.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCC--CCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lp--fpd~sFDlV~~s~~l 327 (667)
+.+|||||||+|.++..+++. .+...++++|.|+.|++.|+++ +.+..+.++|+..+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~-~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE-TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 479999999999999888876 3557899999999999988765 344566778888888 888999999999875
Q ss_pred cccc------------cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 VDWD------------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~------------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+++. .+...+|+++.|+|||||.+++.+..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 4442 23468999999999999999999864
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=125.80 Aligned_cols=98 Identities=15% Similarity=0.251 Sum_probs=77.8
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
.+|||||||+|.++..|++.| ..|+++|.|+.+++.+++ .++++.+...|....++ +++||+|++..++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 589999999999999999886 368999999999987654 35666666667666555 6789999999874443
Q ss_pred c-cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 331 D-QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 331 ~-~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. ++...+++++.++|+|||++++...
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 3 2446799999999999999776543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-11 Score=117.59 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=90.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
+.+|||||||+|.++..++... ....|+++|.++.|++.|+++ ++ ++.+..+++..++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 5799999999999999988652 356799999999999877643 44 36678888888777 779999998742
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeec
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~ 390 (667)
.+...+++++.++|||||++++....... ..+..+++..+|.+..+
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~~-------------~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDPE-------------EEIAELPKALGGKVEEV 167 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCChH-------------HHHHHHHHhcCceEeee
Confidence 45678999999999999999998754221 23456667678876544
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-11 Score=125.29 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=80.3
Q ss_pred CCCEEEEeCCCCch----HHHHHhhcCC----ceeEEEEecCCHHHHHHHHHcC--------C-----------------
Q 005959 253 GVRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLERG--------L----------------- 299 (667)
Q Consensus 253 ~~~~VLDIGCGtG~----~t~~La~~g~----~~~sV~gvD~S~~ml~~A~erg--------l----------------- 299 (667)
.+.+|+|+|||+|. ++..+++... ....|+|+|+|+.|++.|++.- +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999995 4555555422 2467999999999999998631 1
Q ss_pred -------CceEEeecccCCCCCCCCccEEEeccccccccc-CHHHHHHHHHhcccCCeEEEEEe
Q 005959 300 -------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 300 -------~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~-d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.+.+.+.|+...++++++||+|+|.++++++.+ +..+++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 356777888888888889999999988665542 33579999999999999999964
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-11 Score=121.48 Aligned_cols=99 Identities=28% Similarity=0.420 Sum_probs=81.1
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccccc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
+|||||||+|.++..+++.. ....++++|+|+.+++.++++ ++ .+.+...|....|++ ++||+|++..+ ++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~-l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV-IH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHH-HH
Confidence 69999999999999998863 335799999999999888764 33 345666777666765 48999999988 45
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+..+...+|+++.++|||||++++.++.
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 5567889999999999999999999874
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-11 Score=125.76 Aligned_cols=101 Identities=24% Similarity=0.356 Sum_probs=75.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
++.+|||||||.|.++.+++++. .+.|+++.+|+++.+.++++ |+. +.+...|..+++. +||.|++..+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~ 136 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEM 136 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESE
T ss_pred CCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEec
Confidence 34899999999999999999982 35699999999999887644 543 4566667666543 8999999999
Q ss_pred ccccc-cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+.|+. .+...+++++.++|||||.+++...+.
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred hhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 77765 455789999999999999999887654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=116.98 Aligned_cols=104 Identities=25% Similarity=0.242 Sum_probs=87.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||||||+|.++..+++.+.....++++|.++.+++.++++. .++.+..+++..+++++++||+|+++.+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~- 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG- 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc-
Confidence 479999999999999999887532467999999999999887752 2456777888888888889999999887
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++..+...++.++.++|+|||.+++.+...
T Consensus 131 l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 5666788899999999999999999887643
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=116.13 Aligned_cols=104 Identities=23% Similarity=0.271 Sum_probs=87.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
+..+|||+|||+|.++..+++.......++++|.++.+++.++++. ..+.+..+++..+++++++||+|+++.. ++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~-~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFG-LR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeee-eC
Confidence 3479999999999999999987543357999999999999887764 2456777888888888889999999877 56
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+..+...+++++.++|+|||++++.+..
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 6678889999999999999999998754
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-11 Score=129.64 Aligned_cols=100 Identities=25% Similarity=0.322 Sum_probs=79.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
+.+|||||||+|.++..++++. ...|+++|+|++|++.|+++. +.+.+...+...+ +++||+|++..++.|..
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCC
Confidence 3799999999999999998762 347999999999999998763 3445555565544 47899999998755543
Q ss_pred -cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 332 -QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 332 -~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+...+++++.++|||||++++.+...
T Consensus 243 ~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 243 PKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 334689999999999999999987653
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-11 Score=120.18 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=82.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecc-cCCC--CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFAS-KQLP--YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da-~~Lp--fpd~sFDlV~~s~ 325 (667)
..+|||||||+|.++..+++.. ....++++|.++.|++.|+++ +. ++.+.++++ +.++ +++++||+|++++
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4789999999999999998763 446799999999999888753 32 466788887 7777 7788999999986
Q ss_pred ccccccc--------CHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 326 CGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 326 ~ll~~~~--------d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
. ..|.. ....+++++.++|||||+|+++....
T Consensus 120 ~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 P-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred C-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 5 33322 13579999999999999999987643
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-11 Score=124.47 Aligned_cols=100 Identities=22% Similarity=0.284 Sum_probs=79.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-------C----ceEEeecccCCCCCCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------P----AMIGSFASKQLPYPSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-------~----~~~~~~da~~Lpfpd~sFDlV~ 322 (667)
+++|||+|||+|.++..|++.| .+|+|+|.++.|++.|++..- + ..+.+.+++.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 4789999999999999999987 458999999999999987621 1 11233333333 24599999
Q ss_pred ecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
|+.+ +++..++..++..+.+.|||||.+++++.....
T Consensus 164 csev-leHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 164 CSEV-LEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred eHHH-HHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 9999 556788999999999999999999999876543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=115.40 Aligned_cols=99 Identities=19% Similarity=0.289 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~----A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
+.++||+|||.|..+.+|+++|+. |+++|.|+..++. |.+.++++.....|.....++ +.||+|++..++.+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 479999999999999999999865 8999999988854 445688888888888887776 58999999866444
Q ss_pred cccC-HHHHHHHHHhcccCCeEEEEEeC
Q 005959 330 WDQK-DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 330 ~~~d-~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..++ ...++..+...++|||++++...
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 4433 35799999999999999998654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-10 Score=113.09 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=76.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+++||+|||.|.+|..|+.+ .-.++++|.|+..++.|++|- .++.+.+++.... .|+++||+|+++.++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred ccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 3478999999999999999988 467999999999999999873 3466777776553 57889999999998666
Q ss_pred ccc--CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 330 WDQ--KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 330 ~~~--d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.+ +...++..+...|+|||.|++...
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 643 335789999999999999999876
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=115.09 Aligned_cols=100 Identities=16% Similarity=0.004 Sum_probs=78.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CceEEeecccCCCCC-C
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-S 315 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl----------------~~~~~~~da~~Lpfp-d 315 (667)
..+|||+|||.|..+.+|+++|+. |+|+|+|+.+++.+. +.++ .+.+.++|...++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 369999999999999999999764 899999999998753 3332 355677887777643 3
Q ss_pred CCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEEeC
Q 005959 316 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.||.|+-..+++|..++. ..++..+.++|||||++++...
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 5799999887766655443 5699999999999998776654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=115.58 Aligned_cols=100 Identities=24% Similarity=0.325 Sum_probs=83.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-CCCCCCccEEEecccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-PYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-pfpd~sFDlV~~s~~ll~~~ 331 (667)
++.+|||+|||.|.+..+|.+. ..+...|+|++++.+..+.++|+++....++. .| .|++++||.|+++.+ +...
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~VIlsqt-LQ~~ 88 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSFDYVILSQT-LQAV 88 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCccEEehHhH-HHhH
Confidence 3489999999999999999885 35678999999999999999999977665554 35 499999999999998 6666
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.+++.+|.|+.|+ |...+++.|+..
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFPNFg 113 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFPNFG 113 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEecChH
Confidence 7889999999777 557888877543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=119.72 Aligned_cols=129 Identities=21% Similarity=0.273 Sum_probs=95.2
Q ss_pred ccccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH-
Q 005959 219 SFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE- 296 (667)
Q Consensus 219 ~F~~~~~~y-d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e- 296 (667)
.|....... +....-.+.+.+.+.+.+| ++|||||||.|.++.+++++. .+.|+|+++|++|.+.+++
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~L~~G--------~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r 114 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLGLKPG--------MTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKR 114 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcCCCCC--------CEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHH
Confidence 344433333 3334455667777777766 999999999999999999983 4679999999999987765
Q ss_pred ---cCCC--ceEEeecccCCCCCCCCccEEEecccccccc-cCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 297 ---RGLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 297 ---rgl~--~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+|++ +.+...| .+...+.||-|++..++.|+. .+...+|+.++++|+|||.+++.+.....
T Consensus 115 ~~~~gl~~~v~v~l~d---~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 115 IAARGLEDNVEVRLQD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHcCCCcccEEEecc---ccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 3655 3443333 343345699999999866665 34578999999999999999998876543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-10 Score=115.13 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=79.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhc----CCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~----g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||||||+|.++..|++. + ....++++|+|+.|++.|+++. .+..+...++..+++++++||+|+|+.+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDG-LRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCC-CCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 4579999999999999888753 2 2357999999999999998763 2345556667778888889999999998
Q ss_pred ccccccCH--HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 GVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+|+.++. ..+++++.|+++ |.+++.+....
T Consensus 139 -lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 139 -LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred -eecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 4555453 479999999998 66677666543
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=114.10 Aligned_cols=103 Identities=25% Similarity=0.260 Sum_probs=83.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecc-cCCCCCCCCccEEEecccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da-~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
...-|||||||+|..+..|.+.| ...+|+|+|+.|++.|.++-+...+...|+ +.+||..++||.|++..+ +.|.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA-vQWL 125 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA-VQWL 125 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee-eeee
Confidence 56789999999999999999887 347999999999999998766655444443 789999999999999865 6664
Q ss_pred -------cCH----HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 332 -------QKD----GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 332 -------~d~----~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.++ ..++..++.+|++|+..++.-...+
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 222 2478889999999999999876543
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-10 Score=114.96 Aligned_cols=99 Identities=12% Similarity=0.016 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~sFDlV~~s~ 325 (667)
..+|||||||+|.++..++++......|+++|+++ |. ...++.+.++|+...+ +.+++||+|+|+.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 47899999999999999998743445799999987 21 1134667778877753 6678999999986
Q ss_pred cccccccCH-----------HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 326 CGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 326 ~ll~~~~d~-----------~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+ .++..++ ..+|.++.++|||||.|++.++...
T Consensus 126 ~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 126 A-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred C-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 5 4443221 3589999999999999999877543
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=99.24 Aligned_cols=98 Identities=19% Similarity=0.138 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..++++. ....++++|.++.+++.+++. +. +..+...+... ++...++||+|++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~- 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS- 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-
Confidence 3699999999999999999873 336799999999999887643 22 34555555543 3343468999999764
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. .....+++++.++|+|||+|++...
T Consensus 98 ~---~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 G---GLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred c---hhHHHHHHHHHHHcCCCCEEEEEec
Confidence 2 2235899999999999999998753
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=123.81 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=70.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..++.. .....++++|.|+.+++.|+++ ++ .+.+..+|... ++++++||+|+|+.-.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~-~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCE-LPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 468999999999999998865 2346799999999999988765 33 24455555432 2345689999996321
Q ss_pred cc-------------c--------ccC----HHHHHHHHHhcccCCeEEEEEe
Q 005959 328 VD-------------W--------DQK----DGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 328 l~-------------~--------~~d----~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+. + ..+ ...++.++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 11 0 011 1246778899999999999864
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=105.88 Aligned_cols=100 Identities=20% Similarity=0.179 Sum_probs=77.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
.+|||+|||+|.++..+++.+. .++++|.++.|++.++++ +..+.+..+|....+ .++||+|+++...++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 6899999999999999998853 799999999999887754 445566666665443 4589999999764333
Q ss_pred ccC--------------------HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 331 DQK--------------------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 331 ~~d--------------------~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.+. ...++.++.++|+|||.+++..+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 211 24579999999999999999876543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-10 Score=116.99 Aligned_cols=125 Identities=19% Similarity=0.230 Sum_probs=84.1
Q ss_pred cccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC
Q 005959 220 FRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298 (667)
Q Consensus 220 F~~~~~~y-d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg 298 (667)
|...+..| +....|.....+.+..... ..+.++|+|||+|..+..++++ ...|+++|.|++|++.|++.-
T Consensus 5 ~~~~a~~Y~~ARP~YPtdw~~~ia~~~~------~h~~a~DvG~G~Gqa~~~iae~---~k~VIatD~s~~mL~~a~k~~ 75 (261)
T KOG3010|consen 5 FDKQAADYLNARPSYPTDWFKKIASRTE------GHRLAWDVGTGNGQAARGIAEH---YKEVIATDVSEAMLKVAKKHP 75 (261)
T ss_pred ccccHHHHhhcCCCCcHHHHHHHHhhCC------CcceEEEeccCCCcchHHHHHh---hhhheeecCCHHHHHHhhcCC
Confidence 44445555 3335555444444432222 3458999999999777777766 356999999999999998653
Q ss_pred CCc------eEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCe-EEEEEe
Q 005959 299 LPA------MIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTS 355 (667)
Q Consensus 299 l~~------~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG-~Lvis~ 355 (667)
... .....+...|--.++|.|+|+|..| +||. |.+++++++.|+||+.| .+++=.
T Consensus 76 ~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa-~HWF-dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 76 PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA-VHWF-DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred CcccccCCccccccccccccCCCcceeeehhhhh-HHhh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence 211 1222222233334899999999999 8998 45789999999999977 555543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-09 Score=105.07 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=74.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..+++++ ....++++|.++.+++.+++. ++. +.+...|... +.++++||+|+|+.- +
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP-~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPP-F 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccc-h
Confidence 3789999999999999999885 445699999999999888653 444 5565555433 344689999999965 3
Q ss_pred ccccC-----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQK-----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d-----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+...+ ...++.+..+.|||||.|++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 33322 35789999999999999977654
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.1e-10 Score=108.92 Aligned_cols=96 Identities=24% Similarity=0.301 Sum_probs=75.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
+.+|||||||+|.++..++... ....|+++|.++.|++.+++ .++ ++.+..+++..++ .+++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence 4799999999999999987653 34579999999999876653 244 4677888888774 357999999874 2
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+...+++.+.++|+|||.+++...
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3456788999999999999998754
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-10 Score=112.06 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=80.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC---CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP---YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp---fpd~sFDlV~~s~ 325 (667)
..+|||||||+|.++..++++. +...++++|.++.|++.|+++ ++ ++.+..+++..++ +++++||.|++++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3689999999999999999874 456899999999999887643 33 5667778876654 5667999999886
Q ss_pred cccccccCH--------HHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. .+|.... ..+++++.++|||||.|++.+..
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 5 4443221 46899999999999999998754
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=109.02 Aligned_cols=95 Identities=18% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||||||+|.++..+++.......|+++|.++++++.|+++ +. .+.+..+|........++||+|++..+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 37999999999999999887522234699999999999887653 33 2566777776654456799999998763
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.+ +..++.++|+|||+|++..
T Consensus 153 ~~-------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 153 ST-------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ch-------hhHHHHHhcCcCcEEEEEE
Confidence 32 2357889999999998864
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=110.79 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=76.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..+++.+ ..++++|+++.|++.|+++. . ++.+...++..++ ++||+|++..+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 35799999999999999999874 46899999999999887652 2 4567777777765 78999999988
Q ss_pred ccccc-cCHHHHHHHHHhcccCCeEEEEE
Q 005959 327 GVDWD-QKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 327 ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
++|+. ++...++.++.+++++++++.+.
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 66654 23467999999999988776654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-09 Score=115.72 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=76.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
.+|||+|||+|.++..++++. +...++++|+++.|++.|++ .++...+...|... ..++.||+|+|+.. +|.
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPP-FH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPP-FHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCC-ccC
Confidence 589999999999999999874 34579999999999988764 34555555555433 23578999999976 443
Q ss_pred c-----cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 331 D-----QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 331 ~-----~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. .....++.++.+.|||||.|++...
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 2236799999999999999998765
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=109.08 Aligned_cols=102 Identities=18% Similarity=0.343 Sum_probs=82.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCC-CCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lp-fpd~sFDlV~~s~~l 327 (667)
+..+|||||||+|.++..+++.+ ..++++|.++.+++.++++ +....+...+...++ ..+++||+|+++.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~- 123 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM- 123 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH-
Confidence 34789999999999999998875 4589999999999888764 444556666666554 34579999999987
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++.+++..+|+++.++|+|||.++++.+..
T Consensus 124 l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 124 LEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 5556778889999999999999999987753
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-09 Score=112.84 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++...+........+..+++||+|+++.. .
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~-~- 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL-A- 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC-H-
Confidence 47999999999999999887753 4799999999999988764 33222221111123445679999999854 2
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+....++.++.++|||||+++++....
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 223578999999999999999998753
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-09 Score=106.92 Aligned_cols=95 Identities=23% Similarity=0.294 Sum_probs=74.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC-C-CCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-L-PYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-L-pfpd~sFDlV~~s~~ll~~~ 331 (667)
..+|||||||+|.++..+++.. ...++++|.++++++.++++++. +..+++.. + ++++++||+|+|+.+ +++.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~-l~~~ 88 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVN--VIQGDLDEGLEAFPDKSFDYVILSQT-LQAT 88 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCe--EEEEEhhhcccccCCCCcCEEEEhhH-hHcC
Confidence 3689999999999999997653 23578999999999999877654 44556544 4 477889999999988 6667
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+++..+++++.|++++ .+++.+
T Consensus 89 ~d~~~~l~e~~r~~~~---~ii~~p 110 (194)
T TIGR02081 89 RNPEEILDEMLRVGRH---AIVSFP 110 (194)
T ss_pred cCHHHHHHHHHHhCCe---EEEEcC
Confidence 8888999999887664 455544
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-09 Score=107.88 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 305 (667)
......+.+.+...++ .+|||||||+|.++..+++.......|+++|.++.+++.++++ +. ++.+..
T Consensus 62 p~~~~~~~~~l~~~~g--------~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~ 133 (212)
T PRK13942 62 IHMVAIMCELLDLKEG--------MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV 133 (212)
T ss_pred HHHHHHHHHHcCCCCc--------CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE
Confidence 3344455555554443 7999999999999999887632335799999999999888764 33 467777
Q ss_pred ecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+|......+.+.||+|++.... + .....+.+.|||||.+++..
T Consensus 134 gd~~~~~~~~~~fD~I~~~~~~-~------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 134 GDGTLGYEENAPYDRIYVTAAG-P------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccCCCcCCCcCEEEECCCc-c------cchHHHHHhhCCCcEEEEEE
Confidence 8877666667899999998652 2 12346777999999999854
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-09 Score=107.52 Aligned_cols=108 Identities=20% Similarity=0.175 Sum_probs=78.7
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeec
Q 005959 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFA 307 (667)
Q Consensus 233 y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~d 307 (667)
....+.+.+...+ ..+|||||||+|.++..|++.......|+++|.++.+++.|+++ ++ ++.+..+|
T Consensus 65 ~~~~~~~~l~~~~--------~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 65 MVAMMTELLELKP--------GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred HHHHHHHHhCCCC--------cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 3345555555433 37999999999999999988743345699999999999888754 33 45667777
Q ss_pred ccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 308 SKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 308 a~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
........++||+|++..... .+...+.+.|+|||++++..
T Consensus 137 ~~~~~~~~~~fD~Ii~~~~~~-------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 137 GTQGWEPLAPYDRIYVTAAGP-------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCcccCCCCEEEEcCCcc-------cccHHHHHhcCcCcEEEEEE
Confidence 765544456899999875522 23456889999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-09 Score=107.34 Aligned_cols=98 Identities=15% Similarity=0.010 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CceEEeecccCCCCC-C
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-S 315 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl----------------~~~~~~~da~~Lpfp-d 315 (667)
..+|||+|||.|..+..|+++|+ .|+|+|+|+.+++.+. ++++ .+.+.++|+..++.. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 36999999999999999999975 4899999999998763 4443 244567777776543 2
Q ss_pred CCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEE
Q 005959 316 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis 354 (667)
..||+|+-..++++..++. ..++..+.++|+|||++++.
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 5899999887755554333 57999999999999975543
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=107.39 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=83.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCC-CCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP-SLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfp-d~sFDlV~~s~~ 326 (667)
...+|||+|||+|.++..+++.+ ..++++|.++.+++.++++ +. ++.+...++..++.. .++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 35789999999999999998875 3489999999999888764 33 466666777766654 378999999987
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++..++..++.++.++|+|||.+++++...
T Consensus 122 -l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 122 -LEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -HHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 6666788899999999999999999987643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-09 Score=112.42 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=79.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH--HHHc--CCCc--eEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL--TLER--GLPA--MIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~--A~er--gl~~--~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+++|||||||.|.++..|+.+|. ..|+|+|.+.-..-. +.++ +... ......++.+|. .++||+|+|..+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 358999999999999999999974 468999998765422 1122 2222 233357888888 789999999999
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++| ..++-..|.+++..|+|||.+++.+.+.
T Consensus 192 LYH-rr~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 192 LYH-RRSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred hhc-cCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 666 5678899999999999999999987654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-09 Score=111.85 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=80.2
Q ss_pred CCCEEEEeCCCCchHHHHHh-hcCCceeEEEEecCCHHHHHHHHHcC-----C--CceEEeecccCCCCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLF-SKELLTMCIANYEASGSQVQLTLERG-----L--PAMIGSFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La-~~g~~~~sV~gvD~S~~ml~~A~erg-----l--~~~~~~~da~~Lpfpd~sFDlV~~s 324 (667)
.+++|+|||||.|.++..++ ....+...++++|.++++++.|++.. + .+.|..+|+..++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 46899999999886654443 33346678999999999999887532 2 3667888877664345789999999
Q ss_pred ccccccc-cCHHHHHHHHHhcccCCeEEEEEe
Q 005959 325 RCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 325 ~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
++++|. ++..+++..+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 767774 677899999999999999999986
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-10 Score=114.47 Aligned_cols=102 Identities=23% Similarity=0.324 Sum_probs=82.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeeccc-CCC-CCCCCccEEEeccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-QLP-YPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~-~Lp-fpd~sFDlV~~s~~ll~~ 330 (667)
..+++||+|||||.++..|... ...++|+|+|++|++.|.++++--...++++. -++ ..+..||+|++..+ +.+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l~Y 200 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-LPY 200 (287)
T ss_pred ccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH-HHh
Confidence 3689999999999999998766 44589999999999999999875544444444 233 45678999999988 555
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.-+.+.++.-+...|+|||.|.||.-..
T Consensus 201 lG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 201 LGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 6678889999999999999999997543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.1e-09 Score=113.54 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=73.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC----CceEEeecccCCCCCCCCccEEEeccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl----~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+|||+|||+|.++..+++++ +...|+++|.|+.+++.|+++ +. .+.+...+... .+++++||+|+|+..
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 689999999999999999874 456899999999999988754 22 23444444322 234568999999866
Q ss_pred ccccc---c--CHHHHHHHHHhcccCCeEEEEEe
Q 005959 327 GVDWD---Q--KDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 327 ll~~~---~--d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+|.. . ...+++.++.++|+|||.|++..
T Consensus 308 -fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3322 1 12478999999999999999985
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.3e-09 Score=111.23 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=79.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||||||+|.++..++++. +..+++++|. +.+++.++++ ++ .+.+..+|+...++++ +|+|+++++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence 34799999999999999999884 4567899997 6888777543 43 3456777776666654 799999888
Q ss_pred ccccccCH-HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++|.++. ..+|++++++|+|||++++.+...
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 66665433 579999999999999999998744
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=101.04 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=74.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..++++. ....++++|.++.+++.|+++ ++ .+.+...+.. .+++ ++||+|++... .
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~ 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-G 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-c
Confidence 4799999999999999998874 446799999999999888653 22 3455555543 3343 58999999754 2
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.....++.++.++|+|||++++....
T Consensus 108 ---~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 108 ---GNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 23467899999999999999997653
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-09 Score=103.66 Aligned_cols=77 Identities=18% Similarity=0.103 Sum_probs=66.5
Q ss_pred EEecCCHHHHHHHHHcC--------CCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEE
Q 005959 282 ANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 282 ~gvD~S~~ml~~A~erg--------l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvi 353 (667)
+|+|+|+.|++.|+++. .++.+.++|++++|+++++||+|++.++ +++.++...+|+|++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG-LRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecch-hhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 47999999999986542 1467888999999999999999999987 66667889999999999999999999
Q ss_pred EeCCCC
Q 005959 354 TSPLTN 359 (667)
Q Consensus 354 s~p~~~ 359 (667)
.+....
T Consensus 80 ~d~~~~ 85 (160)
T PLN02232 80 LDFNKS 85 (160)
T ss_pred EECCCC
Confidence 987653
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.4e-09 Score=110.22 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------CCCceEEeecccC-CCCCCCC----ccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQ-LPYPSLS----FDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er------gl~~~~~~~da~~-Lpfpd~s----FDlV~ 322 (667)
+.+|||+|||+|..+..|++.......++++|+|++|++.++++ ++++...++|+.. ++++... ..+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 46899999999999999998743246799999999999888664 2344556778765 4444432 23344
Q ss_pred eccccccccc--CHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 323 CARCGVDWDQ--KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 323 ~s~~ll~~~~--d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+..+ +++.+ +...+|++++++|+|||.|++.......
T Consensus 144 ~gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 144 PGST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred eccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 4344 44332 2357999999999999999997765543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-09 Score=113.66 Aligned_cols=101 Identities=25% Similarity=0.347 Sum_probs=81.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCC--CCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL--PYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L--pfpd~sFDlV~~s~~ 326 (667)
...+||||||+|.++..++++. +...++|+|+++.+++.|.++ ++ ++.+..+|+..+ .+++++||.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 3689999999999999999884 557899999999998776543 44 456777787654 578899999998865
Q ss_pred ccccccCH------HHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKD------GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~------~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..|.... ..++.++.|+|+|||.+.+.+-
T Consensus 202 -dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 -VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred -CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5554322 4799999999999999999764
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.3e-09 Score=108.35 Aligned_cols=98 Identities=21% Similarity=0.264 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++.....+. +...++..+.+||+|+|+.. . +
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~--~~~~~~~~~~~fD~Vvani~-~---~ 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE--LNVYLPQGDLKADVIVANIL-A---N 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC--ceEEEccCCCCcCEEEEcCc-H---H
Confidence 3479999999999999988877643 5899999999999887652110000 00112222337999999743 1 2
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
....++.++.++|||||+++++....
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 23578999999999999999998753
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-09 Score=95.64 Aligned_cols=100 Identities=25% Similarity=0.409 Sum_probs=78.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC--CCCCCccEEEeccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCARC 326 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp--fpd~sFDlV~~s~~ 326 (667)
.+|||+|||+|.++..+++.+ ...++++|+++..++.++.+ +. ++.+.++|...+. +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 589999999999999999886 56799999999999888764 22 4677888877775 78899999999865
Q ss_pred ccccc-------cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWD-------QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~-------~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..... .....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 33221 1124789999999999999998765
|
... |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=109.56 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCceEEeecccCCCCCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~Lpfpd~sFDlV~~ 323 (667)
+.+|||||||+|.++..+++.+ ..|+++|+|+.|++.|+++. ..+.+...|...+ +++||+|+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 4799999999999999999885 36899999999999887762 1234555554433 578999999
Q ss_pred cccccccccCH-HHHHHHHHhcccCCeEEE
Q 005959 324 ARCGVDWDQKD-GILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 324 s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lv 352 (667)
..+++|+.++. ..+++.+.+ +.+||.++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 99877765433 345666664 45666644
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=102.79 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+|||+|||+|.++..+++.+. ..++++|.++.+++.++++ +.++.+...|... .+++++||+|+++.....
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 37999999999999999988742 4789999999999877653 4555666666544 356679999999843121
Q ss_pred ccc--------------------CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WDQ--------------------KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~~--------------------d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
... ....++.++.++|||||.+++....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 111 0245788999999999999986543
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.5e-09 Score=105.62 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCceEEeecccC----CCCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQ----LPYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~----Lpfpd~sFDlV~~s~~ 326 (667)
..+|||+|||+|.++..+++.. ....|+++|.++.|++.+.++ ..++.+..+|+.. .+++ ++||+|++...
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~ 150 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVA 150 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCC
Confidence 4799999999999999998863 234799999999998754332 1245566666543 1233 46999997532
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. ......++.++.|+|||||.++++.+
T Consensus 151 -~--p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 151 -Q--PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred -C--hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1 11224578999999999999999533
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-08 Score=105.95 Aligned_cols=131 Identities=20% Similarity=0.279 Sum_probs=92.9
Q ss_pred cccccccccccc--cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH
Q 005959 216 EQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293 (667)
Q Consensus 216 ~~~~F~~~~~~y--d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~ 293 (667)
..+.|.....+| +..+.--+.+.+.++...+ .+|||+|||.|.++..|++.. +...++.+|.+...++.
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~--------~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ 197 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLETLPPDLG--------GKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVES 197 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHHHHHHhCCccCC--------CcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHH
Confidence 334566666666 3444445566777665444 489999999999999999985 46789999999999998
Q ss_pred HHHc----CCCceEEeecccCCCCCCCCccEEEecccccccccCH----HHHHHHHHhcccCCeEEEEEeC
Q 005959 294 TLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 294 A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~----~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|++. ++....+..+....+..+ +||+|+|+--++.-..-. .+++.+..+.|++||.|++...
T Consensus 198 ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 198 ARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 8754 344322222333445555 999999997633222222 3789999999999999999876
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=102.80 Aligned_cols=94 Identities=23% Similarity=0.284 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||||||+|.++..|++.+ ..++++|.|+.|++.|+++ +. .+.+..++ ++..+++||+|++..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 34799999999999999999875 3489999999999988765 22 34555555 4555789999999988
Q ss_pred cccccc-CHHHHHHHHHhcccCCeEEE
Q 005959 327 GVDWDQ-KDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 327 ll~~~~-d~~~~L~Ei~RvLKPGG~Lv 352 (667)
++|+.+ +...+++++.+.+++++.+.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 656542 33568888888776544433
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=86.83 Aligned_cols=96 Identities=26% Similarity=0.346 Sum_probs=74.9
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C--CCceEEeecccCCCC-CCCCccEEEecccccc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G--LPAMIGSFASKQLPY-PSLSFDMLHCARCGVD 329 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---g--l~~~~~~~da~~Lpf-pd~sFDlV~~s~~ll~ 329 (667)
+|||+|||+|.++..+++. ....++++|.++.+++.+++. + ....+...+...... ..++||+|++..+ ++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-ee
Confidence 4899999999999999883 356799999999999877621 1 234455566655543 5578999999987 44
Q ss_pred c-ccCHHHHHHHHHhcccCCeEEEEE
Q 005959 330 W-DQKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 330 ~-~~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
+ ......+++.+.+.|+|||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 556678999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.4e-09 Score=104.80 Aligned_cols=134 Identities=19% Similarity=0.255 Sum_probs=95.6
Q ss_pred ccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCC-ceeEEEEecCCHHHHHHHHHcC------C
Q 005959 227 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKEL-LTMCIANYEASGSQVQLTLERG------L 299 (667)
Q Consensus 227 yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~-~~~sV~gvD~S~~ml~~A~erg------l 299 (667)
|....-..+++-+++..... ...+|||||||.|.....+++-.. ....+.+.|.|+.+++..+++. .
T Consensus 51 fkdR~wL~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~ 124 (264)
T KOG2361|consen 51 FKDRNWLLREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRV 124 (264)
T ss_pred cchhHHHHHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhh
Confidence 33334444556666554332 234899999999999988887531 2378999999999999887653 1
Q ss_pred CceEEeecccC--CCCCCCCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEEeCCCChhhhhhh
Q 005959 300 PAMIGSFASKQ--LPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN 366 (667)
Q Consensus 300 ~~~~~~~da~~--Lpfpd~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~ 366 (667)
.+.+..++... -|.+.+++|.|++.+++....++. ..++.+++++|||||.+++.|.+...+..+|-
T Consensus 125 ~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 125 EAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred cccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 22333333333 346778999999999866655444 57999999999999999999998877665543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=100.39 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lpfpd~sFDlV~~s~ 325 (667)
...+|||+|||+|.++..++.......+++++|.++.+++.++++ ++ ++.+...++.. ++..++.||+|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 347999999999999998876522345799999999999887654 32 34556666654 333346899999864
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. ..+...++.++.++|||||++++...
T Consensus 120 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 120 G----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred C----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 2 24567899999999999999998655
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=107.21 Aligned_cols=100 Identities=22% Similarity=0.333 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCC-CCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPS-LSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd-~sFDlV~~s~~l 327 (667)
++++|||+|||+|.++...++.|. ..+.|+|+++..++.|+++ +++..........+..+. +.||+|+|+-.+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 458999999999999999999874 4689999999999888754 444211111111222333 599999999531
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+-...+..++.+.|||||++++|....
T Consensus 240 ----~vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 240 ----EVLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred ----HHHHHHHHHHHHHcCCCceEEEEeehH
Confidence 113478899999999999999998754
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.1e-08 Score=94.59 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=74.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---ceEEeecccCCCCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
..+|||+|||+|.++..+++++ ..++++|.++.+++.++++ +.. +.+...|... ++.+++||+|+++..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 4689999999999999999873 5689999999999887543 322 5555556544 355568999998754
Q ss_pred ccccc--------------------cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWD--------------------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~--------------------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
..+.. .....+++++.++|||||.+++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 22210 11245899999999999999987654
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-08 Score=103.76 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH----HHHHHHHcCCCceEEee
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----QVQLTLERGLPAMIGSF 306 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~----ml~~A~ergl~~~~~~~ 306 (667)
+.|...++..+..... .+...+..+|||+|||+|.++..+++..-..-.|+++|+++. +++.++++ .++.....
T Consensus 111 ~p~rSKlaa~i~~g~~-~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~ 188 (293)
T PTZ00146 111 NPFRSKLAAAIIGGVA-NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIE 188 (293)
T ss_pred CCcccHHHHHHHCCcc-eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEEC
Confidence 4444455544432222 122234579999999999999999987323357999999986 44555544 34555556
Q ss_pred cccC---CCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 307 ASKQ---LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 307 da~~---Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+.. ..+...+||+|++... . .++...++.++.++|||||+|++...
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva-~--pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA-Q--PDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC-C--cchHHHHHHHHHHhccCCCEEEEEEe
Confidence 6542 2223458999999853 2 23334577799999999999999643
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.6e-10 Score=111.23 Aligned_cols=199 Identities=16% Similarity=0.180 Sum_probs=127.1
Q ss_pred ccccc-ccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH
Q 005959 214 EEEQI-SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ 292 (667)
Q Consensus 214 ek~~~-~F~~~~~~yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~ 292 (667)
.+..+ .|-+.++||-...+ ++.+++..... .+. ..+.++||+|+|.|..+..++.. ...|.+.+.|..|+.
T Consensus 77 s~TdING~lgrGsMFifSe~---QF~klL~i~~p-~w~-~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~ 148 (288)
T KOG3987|consen 77 SQTDINGFLGRGSMFIFSEE---QFRKLLVIGGP-AWG-QEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRD 148 (288)
T ss_pred hhhccccccccCceEEecHH---HHHHHHhcCCC-ccC-CCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHH
Confidence 34444 88888888865544 55666655422 222 23579999999999999999865 345788999999999
Q ss_pred HHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccC-CeEEEEEeCCCChhhhhhhHHHHh
Q 005959 293 LTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKP-GGYFVWTSPLTNPQAFLRNKENQK 371 (667)
Q Consensus 293 ~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKP-GG~Lvis~p~~~~~~~lr~~e~~~ 371 (667)
..+.++-++.- +...--.+-+||+|.|.+. +.-..++.++|++++.+|+| .|..+++-..+.....-.+ ...
T Consensus 149 rL~kk~ynVl~----~~ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N--~~g 221 (288)
T KOG3987|consen 149 RLKKKNYNVLT----EIEWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETN--TSG 221 (288)
T ss_pred HHhhcCCceee----ehhhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecC--CCC
Confidence 99888755432 2222223447999999877 66667888999999999999 8999887655443111001 123
Q ss_pred hhhhhhhhhhccceEEeeccCceEEEeecccccccccCCCCCCCCcCCCCCCCCCCccccc
Q 005959 372 RWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPL 432 (667)
Q Consensus 372 ~W~~ie~l~~~~~W~ll~~~~~~~IwqK~~~~~C~~~R~~~~~p~lC~~~~d~~~~wY~~l 432 (667)
.|.+..++.+..+-....+. +-+.....+..|..-.....|++|+ +|++..+|+-.
T Consensus 222 ~~~rPdn~Le~~Gr~~ee~v---~~~~e~lr~~g~~veawTrlPYLCE--GDm~ns~Y~L~ 277 (288)
T KOG3987|consen 222 LPLRPDNLLENNGRSFEEEV---ARFMELLRNCGYRVEAWTRLPYLCE--GDMHNSFYWLI 277 (288)
T ss_pred CcCCchHHHHhcCccHHHHH---HHHHHHHHhcCchhhhhhcCCeecc--cccccceEEec
Confidence 45555555544433221111 1111111122333345566899999 88999999843
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.82 E-value=3e-08 Score=98.11 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~sFDlV~~s 324 (667)
.+.+|||+|||+|.++..++++......++++|+++.+ ....+.+.++++...+ +++++||+|++.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 34799999999999999998774344569999999865 1123456666665543 456789999986
Q ss_pred cccc---cccc-------CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 325 RCGV---DWDQ-------KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 325 ~~ll---~~~~-------d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.+.. +|.. ....++.++.++|+|||++++..+.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4311 1111 1257899999999999999997653
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.80 E-value=6e-08 Score=104.49 Aligned_cols=102 Identities=21% Similarity=0.154 Sum_probs=79.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEecccc-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG- 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~l- 327 (667)
+.+|||+|||+|.++..++..+ ..++++|.++.|++.++++ ++. +.+..+|+.++|+++++||+|+++.-.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 3789999999999988877654 4689999999999877644 433 467788999999988999999996320
Q ss_pred ----ccc--c-cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 ----VDW--D-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 ----l~~--~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
... . +....++.++.++|||||++++..+..
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 110 1 113679999999999999999987743
|
This family is found exclusively in the Archaea. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-08 Score=99.55 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..+++.. ....++++|.++.+++.+++. ++. +.+..++... ++++++||+|+|+....
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 3589999999999999999863 345799999999999888653 443 5667777654 46678999999964311
Q ss_pred c------cccC-------------------HHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 D------WDQK-------------------DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~------~~~d-------------------~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. +..+ ...++.++.++|+|||.+++...
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 1 1000 12578899999999999999753
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.7e-09 Score=103.68 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=96.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
...++|||||.|.....|..++ +..++-+|.|..|++.++.- ++.....+.|.+.|+|.+++||+|+++.. +||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-hhh
Confidence 4679999999999999999887 44688999999999988654 44555677899999999999999999977 999
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhH
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK 367 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~ 367 (667)
..+.+..+..++..|||+|.|+-+-.....+.++|-.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~s 186 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCS 186 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHH
Confidence 9999999999999999999999998888777666543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.2e-08 Score=97.09 Aligned_cols=93 Identities=19% Similarity=0.090 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..|++.. ..++++|.++.+++.++++ ++ ++.+..++......+.++||+|++..+ .
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~ 154 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-A 154 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-c
Confidence 4799999999999999888763 3689999999999888754 33 355666665433223478999999865 2
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+ .+..++.+.|+|||.+++...
T Consensus 155 ~------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 P------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred h------hhhHHHHHhcCCCcEEEEEEc
Confidence 2 234567899999999998765
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-08 Score=106.85 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
++.+|||||||+|.++...++.|. ..|+++|+++.+++.|+++ ++...+.... ......+.||+|+++-. .
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~-~ 235 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANIL-A 235 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES--H
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCC-H
Confidence 347999999999999999999874 4689999999999887654 5554443222 22334589999999854 1
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+-...++..+.++|+|||+|++|....
T Consensus 236 ---~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 236 ---DVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp ---HHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred ---HHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 123468888999999999999998754
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.9e-08 Score=95.69 Aligned_cols=98 Identities=20% Similarity=0.145 Sum_probs=71.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..+++.. ....++++|.++.+++.++++ ++ ++.+..+++.. ++.....+|.|+...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 4799999999999999988653 346799999999999888753 33 34566666543 222223467765432
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
..+...++.++.++|+|||++++..+.
T Consensus 118 ---~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 ---GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred ---CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234568999999999999999999764
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=96.11 Aligned_cols=100 Identities=15% Similarity=-0.017 Sum_probs=81.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH-----------------cCCCceEEeecccCCCCC--
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-----------------RGLPAMIGSFASKQLPYP-- 314 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e-----------------rgl~~~~~~~da~~Lpfp-- 314 (667)
..+||+.|||.|.-+.+|+++|+. |+|+|+|+..++.+.+ ++..+.+.++|...++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 479999999999999999999864 8999999999988654 234567788888888642
Q ss_pred -CCCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEEeC
Q 005959 315 -SLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 315 -d~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+.||+|+=..+++++.++. .+..+.+.++|+|||.+++...
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 25899998776766665544 5799999999999999988765
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-07 Score=99.15 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..++++. ....++++|+|+.+++.|+++ ++ .+.+..+|+.. ++++++||+|+|+--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 4689999999999999999863 345799999999999888754 44 35566667533 3455689999997211
Q ss_pred c------------cccc------------CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 V------------DWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l------------~~~~------------d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. ++.+ ....++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 0000 114578899999999999998765
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=105.90 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCC--CCCCCccEEEecc-
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCAR- 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lp--fpd~sFDlV~~s~- 325 (667)
++.+|||+|||+|..+..+++... ...|+++|.++.+++.++++ ++.+.+..+|+..++ ++.++||.|++..
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 347999999999999999998742 25799999999999877654 555667777877654 3467899999532
Q ss_pred ---cc-c------ccccC----------HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 326 ---CG-V------DWDQK----------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 326 ---~l-l------~~~~d----------~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.. + .|... ...+|.++.++|||||++++++....
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 10 1 11111 13689999999999999999986543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.1e-08 Score=93.64 Aligned_cols=103 Identities=22% Similarity=0.307 Sum_probs=79.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||.|.+...|++.+++. ..+|+|.|+.+++.|+ .++.+ +.|.++|+..-.+..+.||+|+--..+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 3499999999999999999998763 3899999999997764 34554 678888988777888899999854331
Q ss_pred --cccccC-----HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 --VDWDQK-----DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 --l~~~~d-----~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+...++ +..++..+.+.|+|||+|+|..-+
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 111111 134788899999999999998764
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-07 Score=103.96 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceE--EeecccCCCC--CCCCccEEEec-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLPY--PSLSFDMLHCA- 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~--~~~da~~Lpf--pd~sFDlV~~s- 324 (667)
+.+|||+|||+|..+..+++.. ....++++|.++.+++.++++ |+.+.+ ..++....++ ++++||.|++.
T Consensus 239 g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 4799999999999999998863 245799999999999877544 555333 4455544443 56789999952
Q ss_pred ---c-cccccccC----------------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 325 ---R-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 325 ---~-~ll~~~~d----------------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
. ..++..++ ...+|.++.++|||||+|++++.....
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2 22222222 246899999999999999999876543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=100.46 Aligned_cols=96 Identities=17% Similarity=0.067 Sum_probs=71.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..+++.......|+++|.++.+++.|+++ +. ++.+..+|....+...++||+|++... .
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g-~ 159 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG-V 159 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc-h
Confidence 37999999999999999987632223589999999999887653 43 355667776666555578999998754 2
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. .....+.+.|+|||.+++...
T Consensus 160 ~------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 160 D------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred H------HhHHHHHHhcCCCCEEEEEeC
Confidence 1 223457789999999988653
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=91.98 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
..+|||||||+|.++..+++++ ..++++|.++.+++.++++. .++.+..+|+..+++++.+||.|+++.- ++.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~ 89 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNI 89 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCC-ccc
Confidence 3689999999999999999883 46899999999999887763 2466788899999888878999999854 443
Q ss_pred ccCHHHHHHHHHhc--ccCCeEEEEEe
Q 005959 331 DQKDGILLLEVDRV--LKPGGYFVWTS 355 (667)
Q Consensus 331 ~~d~~~~L~Ei~Rv--LKPGG~Lvis~ 355 (667)
. ...+..+... +.++|.+++..
T Consensus 90 ~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 90 S---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred H---HHHHHHHHhcCCCcceEEEEEEH
Confidence 2 2333333322 45888888864
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.1e-07 Score=96.86 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----CCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..++... ....++++|+++.+++.|+++. .++.+...|... ++++++||+|+++.-..
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcC
Confidence 4689999999999999998874 3467999999999999887652 245566666532 33457999999963211
Q ss_pred cc------c-------------------cCHHHHHHHHHhcccCCeEEEEEe
Q 005959 329 DW------D-------------------QKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 329 ~~------~-------------------~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.. . .....++.++.++|+|||++++..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 10 0 112457888899999999999954
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.9e-08 Score=102.99 Aligned_cols=103 Identities=26% Similarity=0.297 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------------CCceEEeecccC------C
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQ------L 311 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------------l~~~~~~~da~~------L 311 (667)
...+|||||||.|.-..-....+ +..++|+|++...|+.|++|. ..+.+..+|... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 45799999999888766666664 557999999999999998774 123345554432 2
Q ss_pred CCCCCCccEEEecccccccccCH---HHHHHHHHhcccCCeEEEEEeCC
Q 005959 312 PYPSLSFDMLHCARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 312 pfpd~sFDlV~~s~~ll~~~~d~---~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.....||+|-|-+++++..... ..+|..+...|+|||+|+.+.|.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 22235999999999955555544 35999999999999999999884
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-07 Score=93.33 Aligned_cols=142 Identities=21% Similarity=0.337 Sum_probs=92.5
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH----HHHHcCCC----ceEEeecccCCCC------CCCCccEE
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ----LTLERGLP----AMIGSFASKQLPY------PSLSFDML 321 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~----~A~ergl~----~~~~~~da~~Lpf------pd~sFDlV 321 (667)
+|||||||||..+.+++++ ++.....+.|..+..+. ...+.+.+ .....+.....|. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999987 56677888888877642 22333332 1222222222333 35699999
Q ss_pred EecccccccccC--HHHHHHHHHhcccCCeEEEEEeCCCCh-----------hhhhhhHH---HHhhhhhhhhhhhccce
Q 005959 322 HCARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNP-----------QAFLRNKE---NQKRWNFVRDFVENLCW 385 (667)
Q Consensus 322 ~~s~~ll~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~~~-----------~~~lr~~e---~~~~W~~ie~l~~~~~W 385 (667)
+|.++ +|..+- .+.+|+.+.++|+|||.|++..|.... ..+++... ...+.+.+..++...++
T Consensus 107 ~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 99998 665533 357999999999999999999886532 11222111 11223567777888887
Q ss_pred EEeecc-----CceEEEee
Q 005959 386 ELVSQQ-----DETVVWKK 399 (667)
Q Consensus 386 ~ll~~~-----~~~~IwqK 399 (667)
++.... ..+.||+|
T Consensus 186 ~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCcccccCCCCeEEEEeC
Confidence 766542 34566664
|
The function of this family is unknown. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-07 Score=103.15 Aligned_cols=108 Identities=23% Similarity=0.182 Sum_probs=79.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC----CCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP----YPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp----fpd~sFDlV~~ 323 (667)
++.+|||+|||+|..+..+++..-....|+++|.++.+++.++++ |+ ++.+..+|+..++ +..++||.|++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 347999999999999999988632345799999999999877643 44 3567777877766 45678999996
Q ss_pred c----c-cccccccC----------------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 A----R-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 s----~-~ll~~~~d----------------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
. . ..++..++ ...+|.++.++|||||+++.++.....
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 3 1 11222222 246899999999999999999865543
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=97.65 Aligned_cols=102 Identities=18% Similarity=0.095 Sum_probs=75.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCceEEeecccC-CCCCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQ-LPYPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~-Lpfpd~sFDlV 321 (667)
.+.+||+||||+|.++..++++. ...+|+++|+++.+++.|++.- .++.+...|+.. +...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45799999999999999998762 3457999999999999987641 234555666543 23346789999
Q ss_pred EecccccccccC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 322 ~~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++... -++.+. ...+++.+.+.|+|||.+++...
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 98643 232222 14688999999999999998644
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=93.71 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=70.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
...|-|+|||.+.++..+.+ + ..|...|.-.. +..+..+|+.++|+++++.|++++..+++ ..+
T Consensus 73 ~~viaD~GCGdA~la~~~~~-~---~~V~SfDLva~----------n~~Vtacdia~vPL~~~svDv~VfcLSLM--GTn 136 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN-K---HKVHSFDLVAP----------NPRVTACDIANVPLEDESVDVAVFCLSLM--GTN 136 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-------EEEEESS-S----------STTEEES-TTS-S--TT-EEEEEEES-----SS-
T ss_pred CEEEEECCCchHHHHHhccc-C---ceEEEeeccCC----------CCCEEEecCccCcCCCCceeEEEEEhhhh--CCC
Confidence 46899999999999977642 2 34566676431 23466679999999999999999876643 467
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeecc
Q 005959 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~~ 391 (667)
...++.|..|+|||||.|.|++..... ..-.......+.++++...+.
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf----------~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRF----------ENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-----------S-HHHHHHHHHCTTEEEEEEE
T ss_pred cHHHHHHHHheeccCcEEEEEEecccC----------cCHHHHHHHHHHCCCeEEecc
Confidence 889999999999999999999874322 111233445677888888764
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.6e-07 Score=98.81 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=72.9
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCC-CCCccEEEecccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYP-SLSFDMLHCARCGVD 329 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfp-d~sFDlV~~s~~ll~ 329 (667)
.+|||+|||+|.++..++... ....++++|.|+.|++.|+++ +.++.+.++|.....++ .++||+|+|+.-.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 589999999999999988652 346799999999999888754 44566777776543332 458999999753211
Q ss_pred cc--------------------cC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 330 WD--------------------QK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 330 ~~--------------------~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-. ++ ...++.++.+.|+|||.+++...
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 00 01 12567777889999999987654
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-07 Score=96.07 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=76.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
..+|||+|||+|.++..++.+. ....|+++|+++.|++.++++...+.+.+.|+..+.. +++||+|+++....+....
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 3689999999999999887752 2357999999999999998875567778888877653 4689999998764442211
Q ss_pred -------------------HHHHHHHHHhcccCCeEEEEE
Q 005959 334 -------------------DGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 334 -------------------~~~~L~Ei~RvLKPGG~Lvis 354 (667)
...++....++|+|+|.+.+.
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 135677888999999987766
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=95.89 Aligned_cols=111 Identities=18% Similarity=0.140 Sum_probs=77.4
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 305 (667)
......+.+.+...++ .+|||||||+|.+++.|+...-....|+++|..+..++.|+++ +. ++.+..
T Consensus 58 P~~~a~~l~~L~l~pg--------~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--------DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC-TT---------EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhcCCC--------CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 5556667777776665 8999999999999999997633445689999999999888765 44 566777
Q ss_pred ecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+|....--....||.|++..+ .. .-+ ..+.+.|++||++++-.-
T Consensus 130 gdg~~g~~~~apfD~I~v~~a-~~--~ip----~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA-VP--EIP----EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB-BS--S------HHHHHTEEEEEEEEEEES
T ss_pred cchhhccccCCCcCEEEEeec-cc--hHH----HHHHHhcCCCcEEEEEEc
Confidence 775443334568999999866 32 112 357778999999998654
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=96.86 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=73.9
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc-
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG- 327 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l- 327 (667)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++. +.+..+|... ++++++||+|+++.-.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 589999999999999999863 346799999999999888754 343 5666666543 3455589999997211
Q ss_pred -----------ccccc------------CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 -----------VDWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 -----------l~~~~------------d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..+.+ ....++.++.+.|+|||++++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11111 234688899999999999988765
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-07 Score=98.31 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=73.4
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++ .+.+..+|+.. ++++++||+|+|+--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 689999999999999998763 446799999999999888754 43 35667677533 23456899999973111
Q ss_pred ------------cccc------------CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 ------------DWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ------------~~~~------------d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++.+ ....++.++.++|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 114678999999999999998644
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-07 Score=103.33 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEe----
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHC---- 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~---- 323 (667)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ |+. +.+.+.|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 347999999999999988887522234799999999999877643 543 566777777665 5578999995
Q ss_pred cccc-c------cccc----------CHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 ARCG-V------DWDQ----------KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 s~~l-l------~~~~----------d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+... + .|.. ....+|.++.++|||||++++++.....
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2211 1 0111 1235899999999999999999876643
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-07 Score=95.34 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecccC-CCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQ-LPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~-Lpfpd~sFDlV~~s~ 325 (667)
.+.+|||||||+|.++..+++.. +...++++|+++++++.|++.. .++.+..+|+.. +.-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35789999999999999998763 5678999999999999998752 234556666533 222236899999863
Q ss_pred cc-ccccc--CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CG-VDWDQ--KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~l-l~~~~--d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.- ..... ....+++++.++|+|||.+++...
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 10 11111 125799999999999999999654
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-07 Score=95.05 Aligned_cols=103 Identities=20% Similarity=0.256 Sum_probs=78.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCceEEeecccCCC--CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLP--YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~Lp--fpd~sFDlV~~s~ 325 (667)
..+|||+|||+|..+..++++- ....++++|..+.+.+.|++. + ..+.+.++|+..+. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 5899999999999999999883 337899999999999998764 1 23556777776665 3345799999985
Q ss_pred cccccc-----------------cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWD-----------------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~-----------------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
-.+.-. -+.+.+++-..++|||||++.+.-+.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 322211 12346788899999999999998763
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.1e-07 Score=100.29 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=78.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCC-CCCCCccEEEecc--
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCAR-- 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lp-fpd~sFDlV~~s~-- 325 (667)
+.+|||+|||+|..|.++++..-....|+++|.++.+++.++++ |+. +.+...|+..++ +.+++||.|++.-
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 47899999999999999987632345799999999999877644 443 456777877776 5567899999631
Q ss_pred --c-cccccc----------------CHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 326 --C-GVDWDQ----------------KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 326 --~-ll~~~~----------------d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
. .+...+ ...++|.++.+.|||||++++++.....
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 1 111111 1245789999999999999999876543
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.2e-07 Score=92.54 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=81.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||+|.|.++..++++. +...++..|. +..++.+++ ...+.+..+|.. -++|. +|+++..+++++|.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d 173 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD 173 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-H
T ss_pred CccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcch
Confidence 45789999999999999999884 5678889998 778888877 557778888876 66776 999999999888875
Q ss_pred CH-HHHHHHHHhcccCC--eEEEEEeCCCCh
Q 005959 333 KD-GILLLEVDRVLKPG--GYFVWTSPLTNP 360 (667)
Q Consensus 333 d~-~~~L~Ei~RvLKPG--G~Lvis~p~~~~ 360 (667)
+. ..+|+++++.|+|| |.++|.++....
T Consensus 174 ~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 174 EDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp HHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 44 57999999999999 999999876543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.9e-07 Score=96.98 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=74.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------------CCCceEEeecccC-CCCCCCCcc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQ-LPYPSLSFD 319 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er------------gl~~~~~~~da~~-Lpfpd~sFD 319 (667)
.+.+||+||||+|..+..+++.. ....|+.+|+++++++.|++. ...+.+...|+.. +.-.++.||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45799999999999999888763 456799999999999999861 1244555566544 344456899
Q ss_pred EEEeccccccccc---C--HHHHHHHHHhcccCCeEEEEEeC
Q 005959 320 MLHCARCGVDWDQ---K--DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 320 lV~~s~~ll~~~~---d--~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+|++... -.... . ...+++.+.+.|+|||++++...
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9998742 11110 0 14589999999999999988754
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.3e-07 Score=92.52 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecc--
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCAR-- 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~-- 325 (667)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ ++ ++.+...|+..++...++||+|++.-
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 347899999999999999887632234699999999999877643 43 34566677766665566799999631
Q ss_pred --c-ccc--------ccc--------CHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 326 --C-GVD--------WDQ--------KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 326 --~-ll~--------~~~--------d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
. .+. +.+ ....+|.++.+.|||||+++.++.....
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 111 110 1235899999999999999999875543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=87.98 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 305 (667)
......+.+.+...++ .+|||||||+|..++.|++.. .+|+.+|..++..+.|+++ |. ++.+.+
T Consensus 58 P~~vA~m~~~L~~~~g--------~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~ 126 (209)
T COG2518 58 PHMVARMLQLLELKPG--------DRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRH 126 (209)
T ss_pred cHHHHHHHHHhCCCCC--------CeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE
Confidence 4455667777776665 899999999999999999873 3788999999999888764 44 566666
Q ss_pred ecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+|...---+...||.|+...++-. . |. .+.+.|||||++++-.-
T Consensus 127 gDG~~G~~~~aPyD~I~Vtaaa~~-v--P~----~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 127 GDGSKGWPEEAPYDRIIVTAAAPE-V--PE----ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcccCCCCCCCcCEEEEeeccCC-C--CH----HHHHhcccCCEEEEEEc
Confidence 664332223478999999866222 2 22 45678999999998654
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.7e-08 Score=84.50 Aligned_cols=91 Identities=25% Similarity=0.353 Sum_probs=59.3
Q ss_pred Eeccccchhhhhhhhhc-CCCeEEEEeecCCCCCchhhHhcccccc---cccccccCCCCCCCccccccccCccccccCC
Q 005959 520 LDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 520 lDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~~~l~~~~~RGlig---~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
||+|||.|-++..|.+. ...|+.+.+.+ ..+..+-++.--. ..+.=-+.+|.-+.+||+|++..+|..+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~-- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE-- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--
Confidence 79999999999999985 33344443332 3444444433211 22221233444359999999999988762
Q ss_pred CCCCCcchhheeccccccCCcEEEE
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
....++-|+-|+|||||+++|
T Consensus 75 ----~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 ----DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEE
T ss_pred ----CHHHHHHHHHHHcCcCeEEeC
Confidence 456799999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=90.32 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=77.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
...|.|+|||.+.++..- . ..|...|..+ ++-.+..+|+.++|++|+|.|++++..+ -+..+
T Consensus 181 ~~vIaD~GCGEakiA~~~--~----~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV~CLS--LMgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSE--R----HKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAVFCLS--LMGTN 242 (325)
T ss_pred ceEEEecccchhhhhhcc--c----cceeeeeeec----------CCCceeeccccCCcCccCcccEEEeeHh--hhccc
Confidence 468999999999887622 1 2355566532 2345667799999999999999997654 34577
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeecc
Q 005959 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~~ 391 (667)
...++.|++|+|+|||.++|++.-... ..-..+..-...++|......
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf----------~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRF----------SDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhc----------ccHHHHHHHHHHcCCeeeehh
Confidence 889999999999999999999874322 111113334567788776553
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=98.71 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=75.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--fpd~sFDlV~~s~~ 326 (667)
+.+|||+|||+|..+..+++.......|+++|.++.+++.++++ |+ ++.+..+|+..++ ++ ++||+|++..-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 47899999999999999988632345799999999999877653 43 3566777776653 33 68999997521
Q ss_pred -----cccccc---------C-------HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 -----GVDWDQ---------K-------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 -----ll~~~~---------d-------~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.+...+ + ...+|.++.++|||||.+++++....
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 011001 0 13579999999999999998876543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=90.63 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+++||+||||+|.++..++++. ...+++.+|+++.+++.+++.- ..+.+...|... +...+++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 45799999999999999888764 3457999999999999887641 123344444322 222246899999
Q ss_pred ecccccccccC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 323 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+... ....+. ...+++.+.+.|+|||.+++...
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 8754 222221 24688999999999999998744
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=92.88 Aligned_cols=103 Identities=22% Similarity=0.356 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----------CCceEEeecc------cCCCCCC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------LPAMIGSFAS------KQLPYPS 315 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----------l~~~~~~~da------~~Lpfpd 315 (667)
....++|+|||.|.-+...-+.|+. .++++|+++..|+.|++|. .++.+..+|. ..+++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 3478999999999887777677644 5899999999999998762 2345665653 3356677
Q ss_pred CCccEEEecccccccc-cCH---HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 316 LSFDMLHCARCGVDWD-QKD---GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~-~d~---~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+||+|-|-+| +|+. ... ..+|+++.+.|||||+|+-+.|..
T Consensus 195 p~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 67999999998 5543 332 469999999999999999988843
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=88.86 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC--ceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKEL--LTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~--~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
..+|||+|||+|.++..++++.. ....|+++|+++.+++.|++....+.+...|+...++ +++||+|+++--.....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 36999999999999998876421 2357999999999999999776567788888776655 46899999985422111
Q ss_pred -c---------C-HHHHHHHHHhcccCCeE
Q 005959 332 -Q---------K-DGILLLEVDRVLKPGGY 350 (667)
Q Consensus 332 -~---------d-~~~~L~Ei~RvLKPGG~ 350 (667)
. . ...++....+++++|+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 1 23578888887777775
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.8e-06 Score=83.14 Aligned_cols=99 Identities=19% Similarity=0.115 Sum_probs=74.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCC-CCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-PYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L-pfpd~sFDlV~~s~~ 326 (667)
+..+++|||||+|+.+..++.. .+...++++|-++++++..+++ ++ ++.++.+++... +-. .+||.|+....
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGGg 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGGG 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-CCCCEEEECCC
Confidence 4489999999999999999944 4667899999999988665433 43 345555555432 212 27999998876
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
...+.+|+.+...|||||.+++.....
T Consensus 112 -----~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 112 -----GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred -----CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 345789999999999999999977643
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=89.38 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=70.7
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccC-CCC-CCCCccEEEeccccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQ-LPY-PSLSFDMLHCARCGVDW 330 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~-Lpf-pd~sFDlV~~s~~ll~~ 330 (667)
.+|||+|||+|.++..+++.. ....++++|.++.+++.|+++- ....+.++|... ++- ..++||+|+++--.+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 589999999999999998752 3357899999999999887541 123566666543 221 13579999998432110
Q ss_pred ------c---------------cC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 331 ------D---------------QK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 331 ------~---------------~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. .+ ...++..+.++|+|||.+++...
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 01 13577788899999999998765
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-06 Score=88.51 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=84.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC-----ceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~-----~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
...++||.|||.|..|..++-.- ...|..+|..+..++.|++.-.. ..+.+...+.+..+.++||+|++-.|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 45799999999999999887664 34688899999999999854222 345555666665556799999999998
Q ss_pred cccccCH-HHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHH---hhhhhhhhhhhccceEEeec
Q 005959 328 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ---KRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 328 l~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~---~~W~~ie~l~~~~~W~ll~~ 390 (667)
.|..++. -.+|+.+...|+|+|.+++-+..........+.+.. ..-..+..+-+.-+.+++.+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 8876443 579999999999999999977654332111122211 11233445555556665544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-06 Score=97.40 Aligned_cols=103 Identities=15% Similarity=0.046 Sum_probs=76.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------------CCceEEeecccC-CCCCCCCcc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------------LPAMIGSFASKQ-LPYPSLSFD 319 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------------l~~~~~~~da~~-Lpfpd~sFD 319 (667)
.+++|||||||+|..+..++++. ...+++.+|+++++++.+++.. ..+.+...|... +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45799999999999999998763 2368999999999999998731 234556666554 223356899
Q ss_pred EEEecccccccccCH-----HHHHHHHHhcccCCeEEEEEeCC
Q 005959 320 MLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 320 lV~~s~~ll~~~~d~-----~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+|++... ....+.. ..+++.+.+.|||||.+++....
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 9999844 3222211 35889999999999999987643
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-06 Score=86.78 Aligned_cols=98 Identities=19% Similarity=0.160 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CceEEeecccCCCCCC-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYPS- 315 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl----------------~~~~~~~da~~Lpfpd- 315 (667)
..+||..|||.|.-...|+++|+ .|+|+|+|+..++.+. +++. .+.+.++|.-.++-..
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 36999999999999999999974 5899999999999874 3332 1245667777766443
Q ss_pred CCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEE
Q 005959 316 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis 354 (667)
++||+|+=..+++...++. .+..+.+.++|+|||.+++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4799999765544444443 67999999999999994433
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.6e-06 Score=86.67 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=72.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC-C-----CCCCCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-p-----fpd~sFDlV 321 (667)
+++|||||||+|..+..++..-.....++++|.++.+++.|++. ++ .+.+..+++... + .++++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 57999999999998888876532345799999999999888654 44 345566665432 1 124689999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++... .+....++.++.+.|||||.+++...
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 87632 23345789999999999999887543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.7e-06 Score=90.04 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=74.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccCC-C-CCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-P-YPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~L-p-fpd~sFDlV 321 (667)
.+.+||+||||.|.++..++++ .....|+.+|+++.+++.|++.- ..+.+..+|+... . .+++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4689999999999999999887 34567999999999999987642 2345566664322 1 235689999
Q ss_pred EecccccccccC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 322 ~~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++... -.+.+. ...+++.+.+.|+|||.++....
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 98643 222221 13689999999999999987543
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=86.67 Aligned_cols=100 Identities=29% Similarity=0.426 Sum_probs=73.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CceEEeecccC-CC--CCCCCccEEEeccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQ-LP--YPSLSFDMLHCARC 326 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~-Lp--fpd~sFDlV~~s~~ 326 (667)
..+||||||.|.+...+|+.. +...+.|+|.....+..+.+ .++ ++.+.++|+.. +. ++++++|.|+..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 389999999999999999885 56789999999988765543 354 55677777766 32 56789999998876
Q ss_pred ccccccCH--------HHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-.|.... ..++.++.++|+|||.+.+.+-
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 4454211 4699999999999999999765
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-06 Score=88.66 Aligned_cols=101 Identities=24% Similarity=0.259 Sum_probs=81.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCC-CceEEeecccCCC---CCCCCccEEEeccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGL-PAMIGSFASKQLP---YPSLSFDMLHCARC 326 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl-~~~~~~~da~~Lp---fpd~sFDlV~~s~~ 326 (667)
..+||||||.|.+...+|++. +...+.|+|+....+..| .+.++ ++.+.+.|+..+- +++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 479999999999999999986 556899999998776544 45688 8888888876543 45669999999887
Q ss_pred ccccccCH--------HHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
-.|.... ..+++.+.++|+|||.|.+.+-.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 6665322 36999999999999999998653
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.2e-06 Score=84.21 Aligned_cols=110 Identities=22% Similarity=0.224 Sum_probs=86.1
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeeccc
Q 005959 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 309 (667)
Q Consensus 236 ~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~ 309 (667)
.+...+.+.++ .+|||.|.|+|.++.+|+..-.....|+.+|..+...+.|+++ ++ .+.+...|+.
T Consensus 85 ~I~~~~gi~pg--------~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 85 YIVARLGISPG--------SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR 156 (256)
T ss_pred HHHHHcCCCCC--------CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence 45555666555 8999999999999999996533556799999999999999765 22 2455566776
Q ss_pred CCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 310 QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 310 ~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
..-+++ .||+|+.- .+++-.++..++.+|+|||.+++..|+.+.
T Consensus 157 ~~~~~~-~vDav~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 157 EGIDEE-DVDAVFLD------LPDPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred cccccc-ccCEEEEc------CCChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 666665 89999855 267778999999999999999999887543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.2e-06 Score=71.37 Aligned_cols=101 Identities=27% Similarity=0.332 Sum_probs=72.5
Q ss_pred EEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--C---ceEEeecccC--CCCCC-CCccEEEeccccc
Q 005959 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P---AMIGSFASKQ--LPYPS-LSFDMLHCARCGV 328 (667)
Q Consensus 257 VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~---~~~~~~da~~--Lpfpd-~sFDlV~~s~~ll 328 (667)
++|+|||+|..+ .+.........++++|.+..++..+..... . +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 333322111357789999999987554431 1 3455556554 78887 489999 666656
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
++.. ....+.++.++|+|+|.+++.......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 6555 678999999999999999999876543
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.3e-06 Score=91.52 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC----CCCCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----Lpfpd~sFDlV~~s 324 (667)
..+|||+|||+|.++..|++.+ ..++++|.|+.|++.|+++ ++ ++.+..+|+.. +++.+++||+|++.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 4789999999999999999874 4799999999999888754 33 46677777643 34556789999987
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
--.. . ....+..+.+ ++|++.++++..
T Consensus 375 PPr~---g-~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 375 PPRA---G-AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred cCCc---C-hHHHHHHHHh-cCCCeEEEEEeC
Confidence 4311 1 2345555555 699999999864
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.3e-06 Score=82.37 Aligned_cols=103 Identities=22% Similarity=0.309 Sum_probs=65.1
Q ss_pred CCCEEEEeCCCCch----HHHHHhh--c--CCceeEEEEecCCHHHHHHHHHc--------CC-----------------
Q 005959 253 GVRTILDIGCGYGS----FGAHLFS--K--ELLTMCIANYEASGSQVQLTLER--------GL----------------- 299 (667)
Q Consensus 253 ~~~~VLDIGCGtG~----~t~~La~--~--g~~~~sV~gvD~S~~ml~~A~er--------gl----------------- 299 (667)
..-+|+..||++|. ++..|.+ . ......|.|.|+|+.+++.|++- ++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999994 4444444 1 11257899999999999998742 11
Q ss_pred --------CceEEeecccCCCCCCCCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEEe
Q 005959 300 --------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 300 --------~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.+.|...+....+.+.+.||+|+|-++++++.+.. .+++..+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 13355556555334557899999999977776443 579999999999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.5e-06 Score=84.62 Aligned_cols=101 Identities=18% Similarity=0.286 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---------C-----------------------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---------P----------------------- 300 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---------~----------------------- 300 (667)
.+..+|||||..|.++..+++. +....+.|+|+++..|+.|++..- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3578999999999999999987 344569999999999999986420 0
Q ss_pred --------ce-----EEeecccCCCCCCCCccEEEeccc----ccccccCH-HHHHHHHHhcccCCeEEEEE
Q 005959 301 --------AM-----IGSFASKQLPYPSLSFDMLHCARC----GVDWDQKD-GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 301 --------~~-----~~~~da~~Lpfpd~sFDlV~~s~~----ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis 354 (667)
+. ++.-..+-+.+....||+|.|..+ -++|.++. ..+|+.+.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 000001112234567999999743 23444444 57999999999999999884
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.8e-06 Score=98.52 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=74.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCC-CCCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-PYPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~L-pfpd~sFDlV~~s~ 325 (667)
+.+|||+|||+|.++..++..|. .+|+++|.|+.+++.|+++ ++ .+.+..+|+... .-..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47999999999999999998763 3699999999999988754 34 356677775432 11146899999963
Q ss_pred cccc----------cccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CGVD----------WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~ll~----------~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-.+. ...+...++..+.++|+|||.++++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2111 112234678889999999999988764
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.8e-06 Score=86.11 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=68.6
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
+|||||||+|..+..++.+. ....|+++|+|+..++.|+++ ++ +..+...+ -+.--.++||+|+|+--.+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d--lf~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSD--LFEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee--cccccCCceeEEEeCCCCCCC
Confidence 79999999999999999884 446899999999999888654 43 12223222 122122489999998432211
Q ss_pred c-----c-----C--------------HHHHHHHHHhcccCCeEEEEEeC
Q 005959 331 D-----Q-----K--------------DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 331 ~-----~-----d--------------~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. + + ...++.++.+.|+|||.+++..-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1 0 1 12578889999999999998754
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-05 Score=76.99 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=88.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC-----CCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-----YPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp-----fpd~sFDlV~~s~~l 327 (667)
++.-|||+|.|||-+|..++++|+...++++++.++.......++...+.+..+|+..+. +.+..||.|+|.--+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 446899999999999999999999999999999999999988888777777777877665 677889999998665
Q ss_pred cccccCH-HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+.+.... -++|+++...|++||.++--...+
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 5554333 368999999999999999876653
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1e-05 Score=89.60 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCCC--C--CCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLP--Y--PSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~Lp--f--pd~sFDlV~ 322 (667)
+.+|||+|||+|.++..++..+ ...|+++|.++.+++.|++. ++ .+.+..+|+...- + ..++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4789999999999998776554 34799999999999888654 44 3456777765431 1 346899999
Q ss_pred ecccccccc--------cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 323 CARCGVDWD--------QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll~~~--------~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.--.+.-. .....++....++|+|||.|+....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 984422111 1123455667899999999998654
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.4e-05 Score=83.04 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=72.0
Q ss_pred CEEEEeCCCCch----HHHHHhhcC---CceeEEEEecCCHHHHHHHHHc--------CC--------------------
Q 005959 255 RTILDIGCGYGS----FGAHLFSKE---LLTMCIANYEASGSQVQLTLER--------GL-------------------- 299 (667)
Q Consensus 255 ~~VLDIGCGtG~----~t~~La~~g---~~~~sV~gvD~S~~ml~~A~er--------gl-------------------- 299 (667)
-+|+..||.||. ++..+.+.. .....|+|+|+|+.+++.|++- ++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 689999999994 444444431 1146799999999999988742 11
Q ss_pred --------CceEEeecccCCCCC-CCCccEEEecccccccccC-HHHHHHHHHhcccCCeEEEEEe
Q 005959 300 --------PAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 300 --------~~~~~~~da~~Lpfp-d~sFDlV~~s~~ll~~~~d-~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.+.|...+....+++ .+.||+|+|-++++|+.+. ..+++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 112444555444443 5789999999987776533 3579999999999999988853
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=84.96 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=63.7
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeeccc
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASK 309 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~ 309 (667)
...+.+.+.+.... ..+|||||||+|.++..+++++. .++++|.++.|++.++++. .++.+..+|+.
T Consensus 29 ~i~~~i~~~l~~~~--------~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~ 97 (272)
T PRK00274 29 NILDKIVDAAGPQP--------GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDAL 97 (272)
T ss_pred HHHHHHHHhcCCCC--------cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhh
Confidence 34445555554333 37899999999999999999852 6899999999999987753 35677888988
Q ss_pred CCCCCCCCccEEEeccc
Q 005959 310 QLPYPSLSFDMLHCARC 326 (667)
Q Consensus 310 ~Lpfpd~sFDlV~~s~~ 326 (667)
.+++++-.+|.|+++.-
T Consensus 98 ~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 98 KVDLSELQPLKVVANLP 114 (272)
T ss_pred cCCHHHcCcceEEEeCC
Confidence 88876533688888844
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=84.33 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCC-CCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpf-pd~sFDlV~~s~~l 327 (667)
+.+|||+|||+|.++..+++.+ ..|+++|.++.+++.|++. ++ ++.+.++|+..+.. ..++||+|++.--.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 3789999999999999999874 4689999999999887643 44 36778888776543 34579999987431
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
- .....+.++...++|++.++++.-..
T Consensus 251 ~----G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 251 R----GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred C----CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 1 11123334444478888888876543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-06 Score=82.30 Aligned_cols=93 Identities=25% Similarity=0.413 Sum_probs=64.1
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccC-CCCCCCccccccccCcccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEA-FPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~-f~typ~tyDl~H~~~~~~~~~ 593 (667)
-.+|||+|||.|.|+..|.+ .+. +|+-+|-. ..+.. +-.....++-.++ ++ +++||+|+|..+|.+..
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~--~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~~--~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAK--RGF---EVTGVDISPQMIEK---RNVVFDNFDAQDPPFP--DGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHH--TTS---EEEEEESSHHHHHH---TTSEEEEEECHTHHCH--SSSEEEEEEESSGGGSS
T ss_pred CCEEEEEcCCCCHHHHHHHH--hCC---EEEEEECCHHHHhh---hhhhhhhhhhhhhhcc--ccchhhHhhHHHHhhcc
Confidence 45999999999999999977 333 45544544 22222 2222222211121 22 38999999999998775
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
+...+|-+|=|+|+|||++++.+..
T Consensus 93 ------d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ------DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ------HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ------cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 3668999999999999999998653
|
... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.9e-05 Score=81.21 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=62.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCce-EEeecccCC-----CCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM-IGSFASKQL-----PYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~-~~~~da~~L-----pfpd~sFDlV~~s~~ 326 (667)
...+|||+|||||.|+..+++.| ...|+++|.++.|+....+....+. +...++..+ +..-..||+++++.+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 45789999999999999999986 3569999999988876444443322 222233322 212236787777644
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
..|..+.+.|+| |.+++-.
T Consensus 153 ---------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 153 ---------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------hHHHHHHHHhCc-CeEEEEc
Confidence 247789999999 7777654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.3e-05 Score=81.84 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeec
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA 307 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~d 307 (667)
....+.+.+.+.... ..+|||||||+|.++..+++++ ..++++|.++.|++.++++. .++.+..+|
T Consensus 15 ~~~~~~iv~~~~~~~--------~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D 83 (258)
T PRK14896 15 DRVVDRIVEYAEDTD--------GDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGD 83 (258)
T ss_pred HHHHHHHHHhcCCCC--------cCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEec
Confidence 344455555554333 3789999999999999999884 36899999999999887653 246678888
Q ss_pred ccCCCCCCCCccEEEeccc
Q 005959 308 SKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 308 a~~Lpfpd~sFDlV~~s~~ 326 (667)
+..++++ .||.|+++..
T Consensus 84 ~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 84 ALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred cccCCch--hceEEEEcCC
Confidence 8888776 4899999865
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.3e-05 Score=86.34 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC----CCCCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----Lpfpd~sFDlV~~s 324 (667)
..+|||+|||+|.++..|++.. ..|+++|.++.+++.|+++ ++ ++.+..+|+.. +++.+++||+|++.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 3789999999999999999863 4689999999999888754 33 45677777654 23445689999976
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-... .-...++..+.+ ++|++.++++..
T Consensus 370 PPr~---G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 370 PPRK---GCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred cCCC---CCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 4311 112456666554 899998888743
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.3e-05 Score=75.93 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=62.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C-----CCceEEeecccC-C--C-CCCCCccE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G-----LPAMIGSFASKQ-L--P-YPSLSFDM 320 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---g-----l~~~~~~~da~~-L--p-fpd~sFDl 320 (667)
.+.+|||||||+|..+..++... ....|+..|..+ .++..+.. + ..+.+..++=.. . . ....+||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45899999999999999988872 355788899888 66554432 1 122333222111 1 0 23468999
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+++.+++ .....+.++.-+.++|+|+|.++++..
T Consensus 123 IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999944 456667899999999999999888765
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=73.95 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=68.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..++.++ ...|+++|.++.+++.+++. ++ ++.+...|+.. ++...++||+|++.--
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP- 130 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP- 130 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC-
Confidence 3689999999999998766665 35799999999998877643 33 35566666544 3223457999999854
Q ss_pred cccccCHHHHHHHHHh--cccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDR--VLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~R--vLKPGG~Lvis~p 356 (667)
+. ..-...++..+.. +|+|+|.+++...
T Consensus 131 y~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 FR-KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC-CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 22 1122345555554 4899999998865
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.9e-05 Score=77.47 Aligned_cols=130 Identities=19% Similarity=0.249 Sum_probs=86.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cchhh----Hhcccc--cccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~----~~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
..|||+|||+|.++.+|... .+- ..|+-+|.. ..+.. +-+.|+ +-+++.-.+.++. ..+||+|-+..+
T Consensus 47 ~~VLDiGcGtG~~al~la~~-~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIA-RPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHH-CCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc-
Confidence 46999999999988877642 221 245555554 33322 223444 3444444445554 579999998531
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEee---eccC-CCccEEEEEcc
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIE---IESN-SDERLLICQKP 660 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~---~~~~-~~~~~li~~K~ 660 (667)
..+.+++-++-|+|||||.+++-+......++.++++.+-|.+..+- .+.- ++..+.|.+|+
T Consensus 122 ---------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 122 ---------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred ---------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence 23457888999999999999999888888899999999999965442 1211 13446666663
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.2e-05 Score=76.91 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=54.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCcc---EEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFD---MLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFD---lV~~s~~ 326 (667)
..+|||||||+|.++..|++++ ..++++|.++.+++.++++. .++.+..+|+..++++ +|| +|+++..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence 4799999999999999999985 24899999999999887652 3466778888888876 477 7777744
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.9e-05 Score=76.39 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CC-----CCCCCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-----YPSLSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lp-----fpd~sFDlV 321 (667)
+++|||||+++|..+..|++.-.....++.+|.++...+.|++. |+ .+.+..+++.. ++ .+.++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 58999999999999999997633456899999999999888642 43 34556565533 12 123589999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.-.. ..+...++..+.+.|+|||.+++....
T Consensus 126 FiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 126 FIDAD----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEST----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEccc----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 97632 345567899999999999999987653
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.5e-06 Score=81.18 Aligned_cols=94 Identities=16% Similarity=0.251 Sum_probs=61.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhh----Hhcccc---cccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~----~~~RGl---ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
-+|||+|||.|.++..|.+.+..|..+-+.| ..+.. +-++|+ -....|..+ ++ ++.+||+|-|..+|
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~----~~i~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~I~~~~~~ 105 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNP----MSIANLERIKAAENLDNLHTAVVDLNN-LT-FDGEYDFILSTVVL 105 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHHcCCCcceEEecChhh-CC-cCCCcCEEEEecch
Confidence 4799999999999999987443444443322 32222 223444 223344432 22 35789999998887
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
.... ......++-+|-|.|+|||++++
T Consensus 106 ~~~~----~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 106 MFLE----AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhCC----HHHHHHHHHHHHHHcCCCcEEEE
Confidence 5432 23456789999999999999654
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=77.27 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccC-CC-C----CCCCccE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LP-Y----PSLSFDM 320 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~-Lp-f----pd~sFDl 320 (667)
++++|||||+++|..+..++..-.....++.+|.+++..+.|++. |+. +.+..+++.. |+ + .+++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 358999999999999999987422234689999999998888643 543 4555555433 22 1 2368999
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+.-.- ..+...++..+.++|+|||.+++...
T Consensus 198 VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 198 AFVDAD----KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 987632 33446789999999999999988644
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.6e-05 Score=77.23 Aligned_cols=110 Identities=21% Similarity=0.238 Sum_probs=79.4
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeeccc
Q 005959 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 309 (667)
Q Consensus 236 ~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~ 309 (667)
.|...+.+.+| .+|||.|.|+|.++..|+..-.+...|...|.++...+.|++. ++ .+.+...|+.
T Consensus 31 ~I~~~l~i~pG--------~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 31 YILMRLDIRPG--------SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHTT--TT---------EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred HHHHHcCCCCC--------CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 45566666666 8999999999999999997644556799999999999888754 44 3566677775
Q ss_pred CCCCC---CCCccEEEecccccccccCHHHHHHHHHhcc-cCCeEEEEEeCCCC
Q 005959 310 QLPYP---SLSFDMLHCARCGVDWDQKDGILLLEVDRVL-KPGGYFVWTSPLTN 359 (667)
Q Consensus 310 ~Lpfp---d~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvL-KPGG~Lvis~p~~~ 359 (667)
.-.|+ ++.||.|+.-. +++-.++..+.++| ||||++++-.|+..
T Consensus 103 ~~g~~~~~~~~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp CG--STT-TTSEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred cccccccccCcccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 54443 36799998552 45667999999999 99999999998754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.5e-05 Score=77.75 Aligned_cols=103 Identities=20% Similarity=0.259 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCc----hHHHHHhhcCC----ceeEEEEecCCHHHHHHHHH---------cCCC---------------
Q 005959 253 GVRTILDIGCGYG----SFGAHLFSKEL----LTMCIANYEASGSQVQLTLE---------RGLP--------------- 300 (667)
Q Consensus 253 ~~~~VLDIGCGtG----~~t~~La~~g~----~~~sV~gvD~S~~ml~~A~e---------rgl~--------------- 300 (667)
..-+|.-.||+|| +++..|.+... ..+.|.|.|++..+++.|++ ++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3568999999999 45555555542 25889999999999998863 2221
Q ss_pred ----------ceEEeecccCCCCCCCCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEEe
Q 005959 301 ----------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 301 ----------~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+.|...+...-++..+.||+|+|-++++.+.... .+++..++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1122233322232446799999999977766443 579999999999999999963
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.3e-05 Score=84.84 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=72.2
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cchhh----Hhcccc--cccccccccCCCCCCCccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~----~~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
+|||+|||.|.++.+|.+.+. .|+-+|.. .-+.. +-+.|+ --...|.-+ .+ .+..||+|-+..+|.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~-----~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF-----DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLM 195 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhh
Confidence 799999999999999987433 34444543 33332 334555 111122222 11 268999999988876
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEE---cCH-----------HHHHHHHHHHhhCCCeeEEee
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR---DTA-----------RLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~---d~~-----------~~~~~~~~~~~~~~W~~~~~~ 645 (667)
... +-.+..++-+|-|+|+|||++++- ++. -.-++++.+.+. |++...+
T Consensus 196 ~l~----~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 196 FLN----RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred hCC----HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 543 245668999999999999996552 111 113455565554 9887763
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.6e-05 Score=84.41 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=66.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHH----HHcC--CCceEEeecccCCCCCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLT----LERG--LPAMIGSFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g---~~~~sV~gvD~S~~ml~~A----~erg--l~~~~~~~da~~Lpfpd~sFDlV~~s 324 (667)
...|||||||+|.+....++.+ .....|++++-++.++... ++.+ -.+.++..+++.+..+. .+|+|++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 4689999999999987666543 1356899999998766443 2333 35778889999988775 89999997
Q ss_pred ccccccc--cCHHHHHHHHHhcccCCeEEE
Q 005959 325 RCGVDWD--QKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 325 ~~ll~~~--~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
... .+. +-....|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 432 122 223467889999999999987
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.5e-05 Score=79.65 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=60.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hcccc--cccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.+|||+|||.|.++..|.+.+. .|+-+|-. ..+..+ -+.|+ -....|.. .++ ++.+||+|.+..+|
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-----~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~ 104 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-----DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVF 104 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccc
Confidence 4799999999999999987433 34445543 333322 23343 12222322 222 35689999998888
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
.... .-....++-++.|.|+|||++++
T Consensus 105 ~~~~----~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 105 MFLQ----AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ccCC----HHHHHHHHHHHHHHhCCCcEEEE
Confidence 6543 23556899999999999999554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=77.51 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=63.3
Q ss_pred chhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C--CCc--
Q 005959 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G--LPA-- 301 (667)
Q Consensus 229 ~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---g--l~~-- 301 (667)
....|+..+++++..............+|||||||+|.+...|+.+. ....++++|+++.+++.|++. + +..
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 35778888888875432112222345799999999998887777652 246799999999999888753 2 322
Q ss_pred eEE-eecccCCC----CCCCCccEEEeccc
Q 005959 302 MIG-SFASKQLP----YPSLSFDMLHCARC 326 (667)
Q Consensus 302 ~~~-~~da~~Lp----fpd~sFDlV~~s~~ 326 (667)
.+. +.+...+. .+++.||+|+|+--
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCC
Confidence 222 12222221 24678999999966
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.9e-05 Score=86.12 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=77.6
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCC-CceEEeecccCCC--CCCCCccEEEec
Q 005959 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL-PAMIGSFASKQLP--YPSLSFDMLHCA 324 (667)
Q Consensus 252 ~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl-~~~~~~~da~~Lp--fpd~sFDlV~~s 324 (667)
.....+||||||.|.++..+|+.. +...+.|+|.+...+..+. +.++ ++.+...++..+. |+++++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 345789999999999999999884 5578999999988765543 3354 3344444543332 788999999998
Q ss_pred ccccccccCH--------HHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+. -.|.... ..++..+.++|||||.+.+.+-
T Consensus 425 FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 425 FP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 77 6664221 3699999999999999998754
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.2e-05 Score=87.12 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=60.9
Q ss_pred eeEEEeccccchhhhhhhhhc-CCCeEEEEeecCCCCCchhhH----hcccccc----ccccccc-CCCCCCCccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMI----LDRGFVG----VLHDWCE-AFPTYPRTYDLVHA 585 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~~~l~~~----~~RGlig----~~~~~c~-~f~typ~tyDl~H~ 585 (667)
-..|||+|||.|+++..|.+. +..|..+.+.| .++..+ -++|+.. +..|..+ +|+ +.+||+|.+
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~--~~~FD~V~s 192 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADALNQPFE--DGQFDLVWS 192 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCcccCCCC--CCCccEEEE
Confidence 457999999999999999862 12333333222 333322 2345421 1223322 343 389999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
...+.++. +...+|-||-|+|||||.++|.+
T Consensus 193 ~~~~~h~~------d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 193 MESGEHMP------DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCchhccC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 77766554 23468999999999999999853
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=69.34 Aligned_cols=92 Identities=12% Similarity=0.125 Sum_probs=64.2
Q ss_pred CCEEEEeCCCCch-HHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCC-CCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~-~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfp-d~sFDlV~~s~~ll~~~ 331 (667)
..+|||||||+|. ++..|++.|. .|+++|.++..++.+++.+..+.. .|..+-++. -+.+|+|.+... .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~--dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFV--DDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEE--CcCCCCCHHHHhcCCEEEEeCC----C
Confidence 4789999999996 8889988764 589999999999999988764443 454443332 356999999865 3
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++....+.++.+.+ |.-++|...
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEcC
Confidence 33445555665544 344555443
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.7e-05 Score=82.90 Aligned_cols=99 Identities=21% Similarity=0.192 Sum_probs=77.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
...++|+|||.|.++..- +...+.+.|.+...+..++..+.. ....+|+..+|+.+.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~~-----p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN-----PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCC-----CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 478999999999765321 345688999999988888877653 45557899999999999999999885555422
Q ss_pred --HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 334 --DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 334 --~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
...+++|+.|+|||||...+.....
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 2479999999999999988876543
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=73.90 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCce--EEe-ecccC-CC-CCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IGS-FASKQ-LP-YPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~--~~~-~da~~-Lp-fpd~sFDlV~~ 323 (667)
++.+|||||.+.|..+..|+..-.....++.+|.++++.+.|++. |+... ... +++.. +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 358999999999999999997633256799999999999998764 44332 232 23221 22 45689999986
Q ss_pred cccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-. ...+...+|..+.++|+|||.+++...
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 52 234556899999999999999998754
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.9e-05 Score=92.07 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C-----------------CceEEeecccCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L-----------------PAMIGSFASKQLP 312 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l-----------------~~~~~~~da~~Lp 312 (667)
+.+|||+|||+|.++..+++.. ....++++|+|+.+++.|+++. + ++.+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-
Confidence 3589999999999999999874 3357999999999998885431 1 245666665443
Q ss_pred CCC--CCccEEEecccccc-------------cc--------------------cCH----HHHHHHHHhcccCCeEEEE
Q 005959 313 YPS--LSFDMLHCARCGVD-------------WD--------------------QKD----GILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 313 fpd--~sFDlV~~s~~ll~-------------~~--------------------~d~----~~~L~Ei~RvLKPGG~Lvi 353 (667)
+.+ ..||+|+|+--.+. +. ++. .+++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 36999999743110 00 111 3578888999999999887
Q ss_pred EeC
Q 005959 354 TSP 356 (667)
Q Consensus 354 s~p 356 (667)
-.-
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 654
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=80.00 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=68.3
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCC-CCCCccEEEeccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCGV 328 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpf-pd~sFDlV~~s~~ll 328 (667)
.+|||+|||+|.++..++..+ ..|+++|.++.+++.|+++ ++ ++.+..+++..... ..++||+|++.--.-
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 689999999999999999764 4699999999999887654 33 45677777655321 224699999874411
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.-...++..+. .++|++.++++..
T Consensus 312 ---G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 ---GIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---CCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 11234555554 4799999998864
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00021 Score=74.46 Aligned_cols=121 Identities=20% Similarity=0.278 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceE--E
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--G 304 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~--~ 304 (667)
+.+.+.+.+.+..... .....+||+|||+|..+..++.. .....++++|.|+.++..|.++ ++..++ .
T Consensus 131 EE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 4555555555543222 13357999999999999999865 4567899999999999887654 233222 2
Q ss_pred eec-----ccCCCCCCCCccEEEecccccccccCH--------------------------HHHHHHHHhcccCCeEEEE
Q 005959 305 SFA-----SKQLPYPSLSFDMLHCARCGVDWDQKD--------------------------GILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 305 ~~d-----a~~Lpfpd~sFDlV~~s~~ll~~~~d~--------------------------~~~L~Ei~RvLKPGG~Lvi 353 (667)
..+ ....+...+.+|+++|+--.+. .+|. -.++.-+.|.|+|||.+++
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~-~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIR-KDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ecccccccccccccccCceeEEecCCCccc-ccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 111 1223356789999999854221 1111 1345667899999999999
Q ss_pred EeCCC
Q 005959 354 TSPLT 358 (667)
Q Consensus 354 s~p~~ 358 (667)
.....
T Consensus 284 e~~~~ 288 (328)
T KOG2904|consen 284 ELVER 288 (328)
T ss_pred Eeccc
Confidence 87643
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.1e-05 Score=77.04 Aligned_cols=97 Identities=22% Similarity=0.280 Sum_probs=58.3
Q ss_pred eEEEeccccchhhhhhhhhcC---CCeEEEEeecCCCCCchhhHhc----ccc--cccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~~~l~~~~~----RGl--ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++..|.+.- ..|..+-+.| +.+..+-+ .++ +-+++.=.+.++.-+.+||+|++..
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE----NMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH----HHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 479999999999999887621 1233322221 33322222 232 2222211222331137999999877
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.+.... ....+|-|+-|+|+|||++++.+.
T Consensus 123 ~l~~~~------~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 123 GLRNVP------DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccccCC------CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 665443 234688899999999999998653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.3e-05 Score=80.77 Aligned_cols=97 Identities=22% Similarity=0.278 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCc--eEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPA--MIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~~--~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
..++|||||||+|.++..-++.| ...|.++|.|.-+ +.| +.++... .+..+.++.+.+|-...|+|++...
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 45799999999999999999998 4578999987543 444 3445433 3455566666666779999999754
Q ss_pred ccccc--cCHHHHHHHHHhcccCCeEEE
Q 005959 327 GVDWD--QKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 327 ll~~~--~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
.+-.. .-....|-.=.+.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 22221 223567777889999999987
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=2e-05 Score=82.48 Aligned_cols=98 Identities=22% Similarity=0.200 Sum_probs=64.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc-------c--cccccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-------F--VGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG-------l--ig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
..|||+|||.|.++..|.+.-.+-. +|+-+|-. +.|..+-+|. . |-....=.+.+|.=..+||+|.++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4799999999999988875211111 34555544 5565554442 1 122222234454323799999998
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
..+.... +...+|-||-|+|||||.+++.|
T Consensus 153 ~~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV------DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 8776553 34678999999999999998864
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=73.72 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=69.2
Q ss_pred CEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcC---C------------CceEEeecccCCCCCCCCc
Q 005959 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG---L------------PAMIGSFASKQLPYPSLSF 318 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~erg---l------------~~~~~~~da~~Lpfpd~sF 318 (667)
.+.||||.|+|.++.-++.. +.+....+|+|..++.++.++++- + ...++.+|....--+...|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 78999999999999888743 333334489999999998876541 1 2345667766666667899
Q ss_pred cEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 319 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 319 DlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
|.|||... .....+++...|+|||.+++-.
T Consensus 164 DaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 164 DAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 99999843 2345667888899999998854
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.3e-05 Score=79.21 Aligned_cols=96 Identities=23% Similarity=0.394 Sum_probs=62.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccc---cc-cccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VL-HDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig---~~-~~~c~~f~typ~tyDl~H~~~ 587 (667)
+.|||+|||.|+++..+.+....+ +|+-+|-. +++..+-+ .|+-+ ++ .|..+ . .+|.+||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHH
Confidence 369999999999999887631122 23333333 44443333 35422 22 22211 1 2357899999988
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
+|.+.. +...++-++.|+|+|||++++.+.
T Consensus 76 ~l~~~~------~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 76 VIHHIK------DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHhCC------CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 887654 245789999999999999998753
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=1.1e-05 Score=72.09 Aligned_cols=97 Identities=27% Similarity=0.417 Sum_probs=59.0
Q ss_pred EEEeccccchhhhhhhhh--cCCCeEEEEeecCCCCCchhhHhc----ccccc----cccccccCCCCCCCccccccccC
Q 005959 518 NVLDMNAHFGGFNSALLE--KGKSVWVMNVVPTIGTNHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~--~~~~vwvmnv~p~~~~~~l~~~~~----RGlig----~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.|||+|||.|.++.+|.+ ....|..+=..| ..+..+-+ .+.-. +..|+ ..-...+..||+|.+..
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGVDISP----EMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEEESSH----HHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 689999999999999987 444433332222 33333222 23322 22333 22244455699999999
Q ss_pred -ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 -LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 -~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.+..+. +......+|=++-+.|+|||++++.+
T Consensus 79 ~~~~~~~---~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLL---PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCC---HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Ccccccc---chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 333232 11223356778999999999999975
|
... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00029 Score=76.50 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+++||.||+|.|..+..+++.. ....++.+|+++.+++.|++.. ..+.+...|+.. +...+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45799999999999999888763 3457999999999999998642 233445555433 233457899999
Q ss_pred ecccccccccC------HHHHHH-HHHhcccCCeEEEEEe
Q 005959 323 CARCGVDWDQK------DGILLL-EVDRVLKPGGYFVWTS 355 (667)
Q Consensus 323 ~s~~ll~~~~d------~~~~L~-Ei~RvLKPGG~Lvis~ 355 (667)
+-.. -.+... ...+++ .+.+.|+|||++++..
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 8732 111100 135777 8999999999998764
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00014 Score=77.67 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=62.7
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCceEEe
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGS 305 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~ 305 (667)
...+.+.+.+.... ..+|||||||+|.+|..+++.+ ..++++|+++.|++.++++ + .++.+..
T Consensus 23 ~i~~~Iv~~~~~~~--------~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~ 91 (294)
T PTZ00338 23 LVLDKIVEKAAIKP--------TDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE 91 (294)
T ss_pred HHHHHHHHhcCCCC--------cCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 34445555544333 3789999999999999999874 4589999999999988764 2 2466777
Q ss_pred ecccCCCCCCCCccEEEecccccccc
Q 005959 306 FASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
+|+...+++ .||+|+++.- +++.
T Consensus 92 ~Dal~~~~~--~~d~VvaNlP-Y~Is 114 (294)
T PTZ00338 92 GDALKTEFP--YFDVCVANVP-YQIS 114 (294)
T ss_pred CCHhhhccc--ccCEEEecCC-cccC
Confidence 887766654 6899998854 4443
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.7e-05 Score=81.60 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=80.7
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..++|+|||.|....+++.. ....++++|.++..+..+... ++ ...++..+....||++++||.+.+..+ .
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~-~ 188 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV-V 188 (364)
T ss_pred ccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee-c
Confidence 47999999999999998765 345688999998887665433 22 223466788899999999999999988 4
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.+.++...+++|++|+++|||+++..+..
T Consensus 189 ~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 189 CHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred ccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 45678899999999999999999987654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.6e-05 Score=78.63 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=61.9
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-cc-cccccccCCCCCCCccccccccCccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig-~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
..+|||+|||.|.++..|.+....| +-.|-. ..+..+-+++- +. +..|. +.++..+.+||+|-++..+. |
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v-----~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~-~ 115 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQV-----TALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQ-W 115 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeE-----EEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhh-h
Confidence 4579999999999999887633333 333332 44444544431 11 12232 34444447999999876654 2
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
. -+...+|-||-|+|+|||++++.
T Consensus 116 ~-----~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 116 C-----GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred c-----CCHHHHHHHHHHHcCCCeEEEEE
Confidence 2 23567899999999999999986
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00044 Score=72.75 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=93.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH---HHHHc----C-------------------------CC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ---LTLER----G-------------------------LP 300 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~---~A~er----g-------------------------l~ 300 (667)
...+||-=|||.|.++..++.+|+. +.+.|.|--|+- +.... + ++
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~---~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYA---VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccce---EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 4468999999999999999999764 799999999962 22211 0 00
Q ss_pred -------------ceEEeecccCCCCCC---CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhh
Q 005959 301 -------------AMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 364 (667)
Q Consensus 301 -------------~~~~~~da~~Lpfpd---~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~l 364 (667)
.....+|...+..++ ++||+|++.+- +....+.-..|..|.++|||||+++=..|...+....
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF-IDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF-IDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE-eechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 001122222222233 69999998854 6656677789999999999999888877766543221
Q ss_pred --hh-HHHHhhhhhhhhhhhccceEEeeccC
Q 005959 365 --RN-KENQKRWNFVRDFVENLCWELVSQQD 392 (667)
Q Consensus 365 --r~-~e~~~~W~~ie~l~~~~~W~ll~~~~ 392 (667)
.+ ....-.|+++..+.+..+|+.+.+..
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 11 11345689999999999999986543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0001 Score=72.34 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=80.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc-cc-cccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl-ig-~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
..|||+|||.|.++.++.+.. + .|+-+|-. ..+..+-+ .|+ +- +..|+.+.+ +.+||+|-++-.|
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~-~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG-K----CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC-C----EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCC
Confidence 459999999999999998732 2 33434432 33322221 122 11 223444432 4689999988666
Q ss_pred ccccCC---------------CCCCCcchhheeccccccCCcEEEEEcCHHH-HHHHHHHHhhCCCeeEEeeeccCCCcc
Q 005959 590 SLESGH---------------RHRCSTLDIFTEIDRILRPEGWVIIRDTARL-IESARALTTRLKWDARVIEIESNSDER 653 (667)
Q Consensus 590 ~~~~~~---------------~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~-~~~~~~~~~~~~W~~~~~~~~~~~~~~ 653 (667)
...... ..++.+..+|-++.|+|+|||.+++.+.... ..++.++++..-|+........-.-+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~ 172 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLFFEE 172 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecCceE
Confidence 433210 0122356789999999999999998765544 667777777778887777533333344
Q ss_pred EEE
Q 005959 654 LLI 656 (667)
Q Consensus 654 ~li 656 (667)
+.+
T Consensus 173 ~~~ 175 (179)
T TIGR00537 173 LFA 175 (179)
T ss_pred EEE
Confidence 433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00028 Score=70.08 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=54.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCCCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
.+++|+|+|||||.++...+-.| ...|+++|+++++++.++++. ..+.+..+|+.+. ...||.|+.+-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNP 116 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNP 116 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECC
Confidence 45789999999999998888776 346899999999999887652 3577777777665 46789998874
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=4e-05 Score=79.49 Aligned_cols=94 Identities=16% Similarity=0.225 Sum_probs=64.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCCCCccccccccCccccccCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
..|||+|||.|.++.+|.+. .|- ..|+=+|-. ..+..+-++++-=+..|- +.++ ...+||+|+++.+|....
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~-~p~--~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~-- 103 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARR-WPG--AVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWVP-- 103 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhCC--
Confidence 67999999999999999863 121 234444443 666667777742122232 2222 236899999999886553
Q ss_pred CCCCCcchhheeccccccCCcEEEEE
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+...+|-|+-|+|+|||++++.
T Consensus 104 ----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 104 ----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ----CHHHHHHHHHHhCCCCcEEEEE
Confidence 2356889999999999999986
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=3.8e-05 Score=82.81 Aligned_cols=96 Identities=24% Similarity=0.340 Sum_probs=59.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cc---cccccccccCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GF---VGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Gl---ig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
+.|||+|||.|.|+..|++.+ +-.|.-|=|.... .+...+ .+ +. |-+...=-+.+|. +.+||+|+|.+++.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~-~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAV-RKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHH-HHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 689999999999999998743 2223222221110 111111 11 10 1111111134454 78999999988876
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+. -+...+|-++-|.|+|||.+|+.
T Consensus 201 H~------~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 HR------RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred cc------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 43 34567899999999999999985
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00034 Score=75.52 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~ 305 (667)
+.+.+.+..+.....| ..|||==||||.+.....-. ...++|.|++..|++-|+.+ ++. ..+..
T Consensus 183 P~lAR~mVNLa~v~~G--------~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 183 PRLARAMVNLARVKRG--------ELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred HHHHHHHHHHhccccC--------CEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence 3444455555554444 79999999999997766544 46689999999999888754 222 22333
Q ss_pred e-cccCCCCCCCCccEEEeccc-----ccccc---cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 306 F-ASKQLPYPSLSFDMLHCARC-----GVDWD---QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 306 ~-da~~Lpfpd~sFDlV~~s~~-----ll~~~---~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+ |+..+|+++++||.|++-.- ..... +-...+|..+.++|++||++++..|
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4 99999999999999998521 01111 1125799999999999999999988
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=2.4e-05 Score=81.12 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=62.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccc---ccc-ccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VLH-DWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig---~~~-~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-+ .|+.. +.+ |..+--+..+.+||+|.|..
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~-----~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH-----QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4899999999999999987433 44444543 44444433 34421 111 22211112248999999999
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
++.... +...+|-|+-|+|+|||++++-
T Consensus 121 vl~~~~------~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 121 VLEWVA------DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhhC------CHHHHHHHHHHHcCCCeEEEEE
Confidence 887654 2246899999999999999874
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00022 Score=72.79 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C---CCceE
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G---LPAMI 303 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g---l~~~~ 303 (667)
+.+.+.+.+.-..++ ..+.+|||.-.|-|.++...+++|. ..|..++.++..++.|..+ + ..+.+
T Consensus 118 dP~~Dt~~Kv~~V~~------~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i 189 (287)
T COG2521 118 DPLEDTLAKVELVKV------KRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKI 189 (287)
T ss_pred CcHHHHHhhhheecc------ccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEE
Confidence 445555555543322 2568999999999999999999984 3577788888888887643 1 23456
Q ss_pred EeecccCC--CCCCCCccEEEecccccccccC--HHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhh
Q 005959 304 GSFASKQL--PYPSLSFDMLHCARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDF 379 (667)
Q Consensus 304 ~~~da~~L--pfpd~sFDlV~~s~~ll~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l 379 (667)
..+|+.++ .|+|.+||+|+-----+..... -+.+..|++|+|||||.++-.+-.+.....-. .....+.+.
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~-----d~~~gVa~R 264 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL-----DLPKGVAER 264 (287)
T ss_pred ecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC-----ChhHHHHHH
Confidence 66666554 3889999999854222222111 25799999999999999997766554321111 122334444
Q ss_pred hhccceEEeec
Q 005959 380 VENLCWELVSQ 390 (667)
Q Consensus 380 ~~~~~W~ll~~ 390 (667)
..+.+|+.+..
T Consensus 265 Lr~vGF~~v~~ 275 (287)
T COG2521 265 LRRVGFEVVKK 275 (287)
T ss_pred HHhcCceeeee
Confidence 55667765433
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00056 Score=67.55 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~----A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+..+||||||+|..+..|++.-.......+.|+++.+++. |+.++..+..++.|...- ...++.|+++.+.-..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 35789999999999999999875455667899999988765 444555555555553322 2337888888764311
Q ss_pred c--------------cc--cC----HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 329 D--------------WD--QK----DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 329 ~--------------~~--~d----~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
. |. .+ ..+++..+..+|.|.|.|++.....+
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 1 11 11 13577788889999999999876544
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=97.56 E-value=5.4e-05 Score=75.04 Aligned_cols=116 Identities=12% Similarity=0.253 Sum_probs=73.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hcccc--ccccc-ccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVLH-DWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGl--ig~~~-~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..|... .+- ..|+-+|.. ..+.++ -+.|+ |-+++ |. +.++ ...+||+|-+..
T Consensus 44 ~~vLDiGcGtG~~s~~la~~-~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~-~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIA-RPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA-EDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CeEEEecCCCCccHHHHHHH-CCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch-hhcc-ccCCccEEEehh-
Confidence 58999999999888776532 111 123444443 323222 22343 22222 22 2222 247999998854
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCC-CeeEEeeec
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK-WDARVIEIE 647 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~-W~~~~~~~~ 647 (667)
+ ..+.+++-++.|+|+|||.+++........++..+.+++| |.....+..
T Consensus 118 ~---------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 118 L---------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVP 168 (181)
T ss_pred h---------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeecc
Confidence 2 2344677788999999999999988888888888888876 666665443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=3.5e-05 Score=80.68 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=60.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----ccc-cccccc-cCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVG-VLHDWC-EAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----lig-~~~~~c-~~f~typ~tyDl~H~~~~~ 589 (667)
..|||+|||+|+++..|... .. ..|+-+|-. +.+..+-+|- -|- +..|.. .+|+ +.+||+|++..++
T Consensus 54 ~~VLDiGcG~G~~a~~la~~-~~---~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~--~~~FD~V~s~~~l 127 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEK-YG---AHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFP--ENTFDMIYSRDAI 127 (263)
T ss_pred CEEEEEcCCCChhhHHHHhh-cC---CEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCC--CCCeEEEEEhhhH
Confidence 46999999999999888652 22 134444433 4444444431 111 112221 2333 2799999997665
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.+.. ......+|-|+-|+|+|||++++.|-
T Consensus 128 ~h~~----~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 128 LHLS----YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HhCC----HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5432 12455789999999999999999753
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=97.50 E-value=3.3e-05 Score=81.53 Aligned_cols=97 Identities=19% Similarity=0.369 Sum_probs=63.0
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhh----HhcccccccccccccCCCCCCCccccccccCcccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~----~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
.|||+|||.||++-++.+. ..+=|-.|.. +++|+.. |-++||-....--+.-|...+-+||-|=+-+.|-+..
T Consensus 65 ~vLDiGcGwG~~~~~~a~~-~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg 141 (273)
T PF02353_consen 65 RVLDIGCGWGGLAIYAAER-YGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVG 141 (273)
T ss_dssp EEEEES-TTSHHHHHHHHH-H--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTC
T ss_pred EEEEeCCCccHHHHHHHHH-cCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcC
Confidence 8999999999999999983 2554433332 2256554 4578875444433344444455899988888877652
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEE
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+-....++-.++|+|+|||.+++.
T Consensus 142 ----~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 142 ----RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ----GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 245567899999999999999975
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00014 Score=76.41 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=57.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-cc-cccccc-cCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-VLHDWC-EAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig-~~~~~c-~~f~typ~tyDl~H~~~~~~~~ 592 (667)
.+|||+|||.|.++..|.+.-.+.=..+|+-.|-. +.+..+-+|.- +. +..|-. .||+ +.+||+|.+. |+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~--~~sfD~I~~~--~~-- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA--DQSLDAIIRI--YA-- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCc--CCceeEEEEe--cC--
Confidence 56999999999999998762111101245555654 66666655531 11 112222 2444 3799999862 22
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
...+-|+.|+|+|||++|+..
T Consensus 161 ---------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 161 ---------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred ---------CCCHHHHHhhccCCCEEEEEe
Confidence 124579999999999999864
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00012 Score=73.45 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=61.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cccccc----cccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVL----HDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Glig~~----~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.+|||+|||.|.++..+.+.-.+- -+|+-+|.. ..+..+-++ +..... .|.. .++.-+.+||+||+..+|
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~--~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPE--GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCC--cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechh
Confidence 479999999999999887521010 133444433 555555554 111111 1221 122223789999999988
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.... +...++-++-|+|+|||++++.+
T Consensus 98 ~~~~------~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE------DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC------CHHHHHHHHHHHhcCCcEEEEEe
Confidence 7664 24568899999999999999854
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00048 Score=71.76 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CCC------CCCCccE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPY------PSLSFDM 320 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lpf------pd~sFDl 320 (667)
+++|||||+++|..+..|++.-.....++.+|.++...+.|++. |+ .+.+..+++.. |+- ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 57999999999999999987532346799999999988887643 43 34455555432 221 1368999
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
|+.-.- .......+..+.+.|+|||.+++..
T Consensus 160 iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 160 IFVDAD----KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEecCC----HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 997632 3344578888899999999988754
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0021 Score=64.23 Aligned_cols=99 Identities=15% Similarity=0.003 Sum_probs=66.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CC-C-CC-CCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y-PS-LSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lp-f-pd-~sFDlV~~ 323 (667)
..+|||++||+|.++..++.+|. ..++++|.++.+++.+++. +. .+.+...|+.. +. + .. ..||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 47899999999999999999974 3689999999998777543 33 24566666633 22 1 12 24788877
Q ss_pred cccccccccCHHHHHHHH--HhcccCCeEEEEEeC
Q 005959 324 ARCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei--~RvLKPGG~Lvis~p 356 (667)
--- +.. .....++..+ ..+|+++|.+++...
T Consensus 128 DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPP-FFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 543 221 2233444444 347899998887644
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00068 Score=67.09 Aligned_cols=100 Identities=23% Similarity=0.194 Sum_probs=66.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCcee--------EEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCcc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTM--------CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFD 319 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~--------sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFD 319 (667)
...|||-=||+|++....+..+.... .+.+.|+++.+++.|+++ ++ .+.+.+.|+..+++.++++|
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 47899999999999876654432222 388999999999887654 33 34577889999998888999
Q ss_pred EEEeccccccc-cc---CH----HHHHHHHHhcccCCeEEEEE
Q 005959 320 MLHCARCGVDW-DQ---KD----GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 320 lV~~s~~ll~~-~~---d~----~~~L~Ei~RvLKPGG~Lvis 354 (667)
+|+++.- +.. .. +. ..+++++.++|++...+++.
T Consensus 109 ~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 109 AIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999843 111 11 11 35789999999994444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00016 Score=71.39 Aligned_cols=111 Identities=17% Similarity=0.105 Sum_probs=69.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccccccccc-cCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWC-EAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig~~~~~c-~~f~typ~tyDl~H~~~~~~ 590 (667)
.+|||+|||.|.++.++.... +- .+|+-.|-. ..+..+-+ .|+-. +.-.+ .....++..||+|.+++..
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~-~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQF-PS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHC-CC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc-
Confidence 479999999999998887631 21 133333432 33333321 23211 11011 1112345789999986543
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc-CHHHHHHHHHHHhhCCCe
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWD 640 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~ 640 (667)
..+..++-++-|+|+|||++++.. ..+..+++.++++...++
T Consensus 108 --------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 108 --------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred --------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 234568888999999999999976 456678888888888885
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00016 Score=76.75 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=67.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCC-CCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAF-PTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f-~typ~tyDl~H~~~~~~ 590 (667)
.+|||+|||.|.++.++...+. -.|+-+|-. ..+..+.++ |+-..+...+... +..+..||+|.|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~----~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA----AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 5899999999998877765221 123333433 333333332 2211122222212 22246899999965543
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCeeEEe
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 644 (667)
.. ..++-++-|+|+|||+++++.- .+..+++.+..++- |+....
T Consensus 237 ~l---------~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 VI---------KELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred HH---------HHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 32 3578899999999999999754 23455666655665 766544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=68.80 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccCCCCCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~Lpfpd~sFDlV~~ 323 (667)
.+++||=||.|.|..++.++++. .+|+.+|+++.+++.+++-- ..+.+.. .. ..-..++||+|++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCCEEEE
Confidence 57899999999999999999984 38999999999999998731 1222221 11 1112368999997
Q ss_pred cccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
-.. ....+.+.++|.|+|||.++...-.+
T Consensus 146 Ds~------~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 146 LQE------PDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred cCC------CChHHHHHHHHhcCCCcEEEECCCCc
Confidence 732 23568899999999999999975443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00037 Score=72.37 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=66.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCCCccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
.+|||+|||.|..+.++...+.. .|+-+|-. ..+..+-++ |+-...+ ++.-..+||+|.|+-....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~----~v~giDis~~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK----KVLAVDIDPQAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANP 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC----eEEEEECCHHHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHH
Confidence 57999999999888877653222 13333332 333333332 3311111 1110126999998543322
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCeeEEe
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 644 (667)
+..++-++-|+|+|||++|+++- .+..+++.+.++...+++...
T Consensus 192 ---------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 192 ---------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred ---------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 23577799999999999999864 344667777778877876654
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00016 Score=72.72 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=75.3
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cc-cccccccCCCC-C-CCccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPT-Y-PRTYDLVHA 585 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig-~~~~~c~~f~t-y-p~tyDl~H~ 585 (667)
-.+|||+|||.|.++..|.+. .+- -+|+-+|-. ..+..+-+ .|+ +- +..|..+.++. + +.+||+|.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~-~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKA-NPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHH-CCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 468999999999999988752 111 123333332 33332221 232 11 22233233441 3 478999987
Q ss_pred cCccccccC---CCCCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhCCCeeEEe
Q 005959 586 EGLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 586 ~~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
.... .|.. ...+.....+|-++.|+|+|||+|++. +.......+.+.+..--|.+.+.
T Consensus 118 ~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 118 NFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred ECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 5432 1210 002233567899999999999999996 66777777777777777877643
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.001 Score=74.35 Aligned_cols=99 Identities=26% Similarity=0.381 Sum_probs=81.7
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC----CceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl----~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
++|-+|||.-.+...+.+.|+. +|+.+|.|+..++....++. ...+...++..+.|++++||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999999999998865 58899999999988877763 23567889999999999999999987755544
Q ss_pred cCH---------HHHHHHHHhcccCCeEEEEEeC
Q 005959 332 QKD---------GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 332 ~d~---------~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+. ...+.+++|+|+|||+++....
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 332 2457899999999999887766
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=9.5e-05 Score=81.62 Aligned_cols=95 Identities=18% Similarity=0.314 Sum_probs=63.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc--ccccccccccCCCCCCCccccccccCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG--lig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
..|||+|||.|+++..|.+. ..+ .|+-+|-. .++..+-+|. + . ..-.+..+...+.+||.|.+..+|.+..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~-~g~---~V~giDlS~~~l~~A~~~~~~l-~-v~~~~~D~~~l~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEH-YGV---SVVGVTISAEQQKLAQERCAGL-P-VEIRLQDYRDLNGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHH-CCC---EEEEEeCCHHHHHHHHHHhccC-e-EEEEECchhhcCCCCCEEEEeCchhhCC
Confidence 37999999999999988762 232 34444443 6666665543 2 1 1111122222357899999988876542
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEE
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.-....++-++.|+|+|||++++.
T Consensus 243 ----~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 243 ----PKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred ----hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 234557899999999999999985
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0016 Score=73.82 Aligned_cols=108 Identities=22% Similarity=0.350 Sum_probs=74.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCC-CCCCCccEEE----
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLH---- 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lp-fpd~sFDlV~---- 322 (667)
++.+|||++||+|.=|.++++.--....++++|+++.-++..+++ |+. +.+...|...++ ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 458999999999999999987632334789999998887665433 554 345556665543 2245799999
Q ss_pred eccccc---------ccccC--------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 323 CARCGV---------DWDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 323 ~s~~ll---------~~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
|+.... .|.+. ..++|....+.|||||+++.++-....
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 653211 11100 135788999999999999999876554
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=97.36 E-value=9.9e-05 Score=74.35 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=60.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc---ccccccccccCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG---FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG---lig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
..|||+|||.|.|...|.+....+ .++-+|.. ..+..+-++. +.-+..|. +.++..+.+||+|.++.++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA---EFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC---cEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc
Confidence 579999999999999998632111 12333322 2232233321 11122222 2334445899999998887644
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
. +...+|-++.|+|+|||++++..
T Consensus 112 ~------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 D------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred c------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 2 35579999999999999999863
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=97.33 E-value=9.8e-05 Score=79.71 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=66.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
..|||+|||.|.|+-.|...+. +|+-+|.. ..+.++-++ ++ |-.++.=.+.++..+.+||+|=|..+
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~-----~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA-----TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 3799999999999998876322 45555655 555555443 22 22222223445544579999999998
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.+.. +...+|-|+-|+|+|||.+++.+
T Consensus 208 LeHv~------d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 208 IEHVA------NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HHhcC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 87764 34579999999999999999874
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00059 Score=71.05 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=80.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc---cc----cccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GF----VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R---Gl----ig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++.+|... .+- ..|+-+|.. ..+..+-++ +. -=+..|+-++++ +.+||+|-++--
T Consensus 110 ~~vLDiG~GsG~~~~~la~~-~~~--~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npP 184 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKE-RPD--AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPP 184 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCC
Confidence 36999999999999999863 221 234444443 333333332 21 112235544444 378999987543
Q ss_pred cccccCC----C-------------CCCC---cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeecc
Q 005959 589 LSLESGH----R-------------HRCS---TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIES 648 (667)
Q Consensus 589 ~~~~~~~----~-------------~~c~---~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~ 648 (667)
+.....- . .... +..++-++-++|+|||++++.-....-+.++.+.+...+.......+-
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~ 264 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDL 264 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCC
Confidence 3211100 0 0000 124666777999999999996544455667777777666533333344
Q ss_pred CCCccEEEEEc
Q 005959 649 NSDERLLICQK 659 (667)
Q Consensus 649 ~~~~~~li~~K 659 (667)
.+.+++++++|
T Consensus 265 ~~~~r~~~~~~ 275 (275)
T PRK09328 265 AGRDRVVLGRR 275 (275)
T ss_pred CCCceEEEEEC
Confidence 56788888765
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00014 Score=78.32 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=59.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccccccccccccCCCCCCCccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
+.|||+|||.|.++.+|+..+ .--|.-|=|.... .+...+- ..+-+.+...=-+.++. +.+||+|-|.+++.+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhc
Confidence 689999999999998887632 2233333333221 2211110 11111111100122332 248999999998865
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.. +...+|-|+-|+|||||.+|+.
T Consensus 201 ~~------dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 RK------SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred cC------CHHHHHHHHHHhcCCCCEEEEE
Confidence 43 4568999999999999999985
|
Known examples to date are restricted to the proteobacteria. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0007 Score=71.97 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=65.1
Q ss_pred CCCCCCceeEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhcc-cccccccccccCC--CCCCCcccc
Q 005959 509 PSPPYNMVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAF--PTYPRTYDL 582 (667)
Q Consensus 509 ~~~~~~~~R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~R-Glig~~~~~c~~f--~typ~tyDl 582 (667)
..+..++ +|||+|||.|+|..+|.+. +-.|+.+-+.|.-..+.+.++-+| +++-+..|-+.+. ...+-++|+
T Consensus 128 l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred eccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence 4455553 7999999999999999873 123555554432222344455444 5777777876542 111246888
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
|-++-.. . + ....+++|+.|+|+|||+|+|.
T Consensus 206 V~~Dva~-p-----d--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVAQ-P-----D--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCCC-c-----c--hHHHHHHHHHHhccCCCEEEEE
Confidence 8664421 1 1 1224677999999999999983
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00043 Score=67.88 Aligned_cols=99 Identities=18% Similarity=0.137 Sum_probs=59.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecc------cCCC--C--CCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS------KQLP--Y--PSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da------~~Lp--f--pd~sFDlV~ 322 (667)
...+|||+||++|.|+..+++++.....|+++|..+.. ....+...++|. ..+. + ..+.||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 45899999999999999999996556789999997651 001111111111 1111 1 226899999
Q ss_pred ecccccccc----cCH-------HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGVDWD----QKD-------GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll~~~----~d~-------~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
|-.+ .... .+. ...+.-+...|+|||.+++-....
T Consensus 97 ~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 97 SDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp E--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred cccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 9752 2211 111 134555567899999999887653
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0015 Score=72.31 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=70.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEecccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
.+|||++||+|.++..++... ....|+++|.++.+++.++++ ++. ..+...|+..+....+.||+|+..--
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 589999999999999998652 234699999999999887653 343 33666666553221457999998631
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
..+..++....+.+++||++.++.
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 223567888788899999999984
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0023 Score=63.88 Aligned_cols=93 Identities=27% Similarity=0.304 Sum_probs=69.6
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCC-ceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
+++|||+|.|.-+..|+=. .+...++.+|....-+.+. .+-++. +.+....++. +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~-~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIA-RPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHh-CCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 7999999999988887754 2456799999998766543 344665 6677777777 556679999998754
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.....++.-+.+.|++||.+++.-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 345688999999999999998864
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0019 Score=68.27 Aligned_cols=105 Identities=17% Similarity=0.103 Sum_probs=66.7
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCce---EE-eecccCCCCCCCCccEEEec
Q 005959 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAM---IG-SFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 252 ~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~---~~-~~da~~Lpfpd~sFDlV~~s 324 (667)
..+++|||+|||+|..+..+.+.--....++.+|.|+.|++.++.- ..... .. ..-....++. ..|+|+++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 4568999999999986655544311345789999999999877642 11111 00 0011123333 34999999
Q ss_pred ccccccccCH-HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 325 RCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 325 ~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+++....+.. ..+++.+.+.+.+ +|+|.+++...
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 9977765421 3466666666655 99999997643
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00053 Score=67.80 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=69.2
Q ss_pred eEEEeccccchhhhhhhhhcCC---CeEEEEeecCCCCCchhhHhcccccccccccccC---------CCCCCCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGK---SVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEA---------FPTYPRTYDLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~---~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~---------f~typ~tyDl~H 584 (667)
.+|||+|||.|+++.++..... .|+..=+.|.. .+ .++--+.+|..+. ++ +.+||+|=
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~-~~i~~~~~d~~~~~~~~~l~~~~~--~~~~D~V~ 103 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PI-ENVDFIRGDFTDEEVLNKIRERVG--DDKVDVVM 103 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cC-CCceEEEeeCCChhHHHHHHHHhC--CCCccEEE
Confidence 4899999999999887765211 24444333321 00 1222222344332 22 26799988
Q ss_pred ccCccc--c-ccC--CCCCCCcchhheeccccccCCcEEEEE-cC----HHHHHHHHHHHhhCCCeeEEeeecc---CCC
Q 005959 585 AEGLLS--L-ESG--HRHRCSTLDIFTEIDRILRPEGWVIIR-DT----ARLIESARALTTRLKWDARVIEIES---NSD 651 (667)
Q Consensus 585 ~~~~~~--~-~~~--~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~----~~~~~~~~~~~~~~~W~~~~~~~~~---~~~ 651 (667)
++.... . +.- ....+.+..+|-++-|+|+|||.+++. .. .+++++++. .+ |+..+...-. .+.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~ 179 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSA 179 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccc
Confidence 754311 1 100 001123457899999999999999994 22 233333333 22 5555553222 235
Q ss_pred ccEEEEE
Q 005959 652 ERLLICQ 658 (667)
Q Consensus 652 ~~~li~~ 658 (667)
|..+||.
T Consensus 180 ~~~~~~~ 186 (188)
T TIGR00438 180 EVYIVAK 186 (188)
T ss_pred eEEEEEe
Confidence 8888874
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00049 Score=71.21 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=67.2
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----c-cccccccccCCCCCCCccccccccCcc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----l-ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
-.+|||+|||.|.++..|.+. .+- -+|+=+|-. ..+..+-++- + .+-+.+| .+ +.+||+|+++.+|
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~-~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~---~~--~~~fD~v~~~~~l 103 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVER-WPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASW---QP--PQALDLIFANASL 103 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhcc---CC--CCCccEEEEccCh
Confidence 468999999999999988763 111 123333332 3333333321 1 1222222 22 3689999999988
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcC--H--HHHHHHHHHHhhCCCee
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--A--RLIESARALTTRLKWDA 641 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--~--~~~~~~~~~~~~~~W~~ 641 (667)
.... +...+|-+|-|+|+|||.+++.-. . .....+++++....|..
T Consensus 104 ~~~~------d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 104 QWLP------DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred hhCC------CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 6543 245789999999999999998621 1 12223445555555553
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0015 Score=66.28 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=78.5
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCC---CCCCccEEEecccccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY---PSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpf---pd~sFDlV~~s~~ll~~~ 331 (667)
-++|||||=....... ..+ ...|+++|.++. ...+.+.|....|. +++.||+|.|+.+ +.+.
T Consensus 53 lrlLEVGals~~N~~s--~~~--~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG--WFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLV-LNFV 117 (219)
T ss_pred ceEEeecccCCCCccc--ccC--ceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEE-EeeC
Confidence 6899999975543222 222 345899998752 22234446666665 3679999999987 7788
Q ss_pred cCHH---HHHHHHHhcccCCeE-----EEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeecc
Q 005959 332 QKDG---ILLLEVDRVLKPGGY-----FVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (667)
Q Consensus 332 ~d~~---~~L~Ei~RvLKPGG~-----Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~~ 391 (667)
+++. ..++.+++.|+|+|. |++..|.+-..... .-.-+.+..+.+.+++..+..+
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSR-----y~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSR-----YMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccc-----ccCHHHHHHHHHhCCcEEEEEE
Confidence 7773 699999999999999 88888754221110 1122345667788888877653
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0005 Score=70.36 Aligned_cols=134 Identities=21% Similarity=0.315 Sum_probs=79.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccc--ccc-ccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGV-LHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGl--ig~-~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.|+.++.+. .+- .+|+-.|-. ..+..+- ..|+ +-+ ..|+-+.++ +.+||+|-++--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~-~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKE-RPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCC
Confidence 36999999999999999863 121 134444432 3333222 2343 112 224434443 278999998655
Q ss_pred cccccCC---CCCCC-----------------cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeecc
Q 005959 589 LSLESGH---RHRCS-----------------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIES 648 (667)
Q Consensus 589 ~~~~~~~---~~~c~-----------------~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~ 648 (667)
|...... ..... ...++-++-|+|+|||.+++.......++++++.+...++......+-
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceEEEeCC
Confidence 4431100 00000 124677889999999999998776667788888888888755444343
Q ss_pred CCCccEE
Q 005959 649 NSDERLL 655 (667)
Q Consensus 649 ~~~~~~l 655 (667)
.+..+++
T Consensus 244 ~~~~r~~ 250 (251)
T TIGR03534 244 AGKDRVV 250 (251)
T ss_pred CCCcCee
Confidence 3444443
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=70.59 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=68.3
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecc
Q 005959 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 252 ~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
...+.|||+|||.|.++...++.|. ..|.+++.| +|.+.|++. ++ .+.++.+-++++.+|+ ..|+|++.-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEP 251 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEP 251 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEecc
Confidence 3458899999999999999988874 468999876 577777643 22 2334556677777774 899999975
Q ss_pred cccccccC-HHHHHHHHHhcccCCeEEEE
Q 005959 326 CGVDWDQK-DGILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 326 ~ll~~~~d-~~~~L~Ei~RvLKPGG~Lvi 353 (667)
...-...+ .-...-..+|.|||.|..+=
T Consensus 252 MG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 252 MGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred chhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 43332211 11223346699999999873
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=69.00 Aligned_cols=104 Identities=19% Similarity=0.153 Sum_probs=65.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH--------------------cCCC------------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--------------------RGLP------------ 300 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e--------------------rgl~------------ 300 (667)
++.++||||||+-.+-..-+.. ....|+..|.++..++..++ .|..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4579999999997664333333 25578999999877653321 1100
Q ss_pred --ceEEeecccCCC-CCC-----CCccEEEecccccccccCHH---HHHHHHHhcccCCeEEEEEeCCC
Q 005959 301 --AMIGSFASKQLP-YPS-----LSFDMLHCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 301 --~~~~~~da~~Lp-fpd-----~sFDlV~~s~~ll~~~~d~~---~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
..+...|+.+.+ +.. ..||+|++.+|+.....+.+ ++++.+.++|||||.|++.....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 113445554433 332 25999999999766666664 69999999999999999987644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=70.67 Aligned_cols=102 Identities=23% Similarity=0.194 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-CCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
.....+|+|.|.|..+..+... ++. +.++++..+.+-.++... ..+..+.+|+-+- .|. -|+|++-.+++||.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp~--ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YPH--IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CCC--CceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 3578999999999999999984 443 677888877765544332 3344444443332 333 36999999999998
Q ss_pred cCH-HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 332 QKD-GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 332 ~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
++. .++|+++...|+|||.+++.+.+...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 544 68999999999999999999985543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0002 Score=62.91 Aligned_cols=90 Identities=27% Similarity=0.310 Sum_probs=46.7
Q ss_pred EeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--ccccc-ccccCCCCCC-CccccccccCccc
Q 005959 520 LDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVLH-DWCEAFPTYP-RTYDLVHAEGLLS 590 (667)
Q Consensus 520 lDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig~~~-~~c~~f~typ-~tyDl~H~~~~~~ 590 (667)
||+|||.|.+..+|++. . -...++=.|-. +-+..+-+| +. .-... +--+.+...+ .+||+|.+..+++
T Consensus 1 LdiGcG~G~~~~~l~~~-~--~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE-L--PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHH-C---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHh-C--CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999973 1 23344444443 444222222 21 11111 1112233333 5999999999998
Q ss_pred cccCCCCCCCcchhheeccccccCCcEE
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWV 618 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~ 618 (667)
+.. .+..+|-.+-++|+|||.+
T Consensus 78 ~l~------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLE------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-------HHHHHHHHTTT-TSS-EE
T ss_pred hhh------hHHHHHHHHHHHcCCCCCC
Confidence 773 4557889999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0048 Score=65.25 Aligned_cols=137 Identities=22% Similarity=0.251 Sum_probs=89.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHH----HHcCCCc--eEEeecccCC---CCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLT----LERGLPA--MIGSFASKQL---PYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~-~~sV~gvD~S~~ml~~A----~ergl~~--~~~~~da~~L---pfpd~sFDlV~ 322 (667)
.+-+||||.||.|.+.....+.... ..+|.-.|.|+..++.. +++|+.. .|.++|+.+- .--+-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4579999999999987777665322 46889999999988654 4667653 5776665432 11123568999
Q ss_pred ecccccccccCH---HHHHHHHHhcccCCeEEEEEeCCCChhhhhhhH---HHH--hhh-------hhhhhhhhccceEE
Q 005959 323 CARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK---ENQ--KRW-------NFVRDFVENLCWEL 387 (667)
Q Consensus 323 ~s~~ll~~~~d~---~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~---e~~--~~W-------~~ie~l~~~~~W~l 387 (667)
.+.. +...+|- ...|.-+.+.|.|||+++.+.-+-.++-++-.. .++ ..| .+|+.+.+.-+++.
T Consensus 215 VsGL-~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 215 VSGL-YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred Eecc-hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 8876 6666553 357999999999999999987432221110011 111 234 56777777777765
Q ss_pred eec
Q 005959 388 VSQ 390 (667)
Q Consensus 388 l~~ 390 (667)
+.+
T Consensus 294 ~~q 296 (311)
T PF12147_consen 294 IDQ 296 (311)
T ss_pred hhh
Confidence 544
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0017 Score=67.83 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc--CCC----ceEE
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GLP----AMIG 304 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er--gl~----~~~~ 304 (667)
....++|.+.....+ +..|||||.|||++|..|++.+ ..|++++.++.|+....+| |.+ .++.
T Consensus 44 p~v~~~I~~ka~~k~--------tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKP--------TDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred HHHHHHHHhccCCCC--------CCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 444555555544444 4899999999999999999985 4589999999999888776 333 3456
Q ss_pred eecccCCCCCCCCccEEEeccc
Q 005959 305 SFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 305 ~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+|....++| .||.++++.-
T Consensus 113 ~gD~lK~d~P--~fd~cVsNlP 132 (315)
T KOG0820|consen 113 HGDFLKTDLP--RFDGCVSNLP 132 (315)
T ss_pred ecccccCCCc--ccceeeccCC
Confidence 6677666666 5999999743
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0007 Score=67.61 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=59.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc-----ccccccccccCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG-----lig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.+|||+|||.|.++.++... .+. .-.++-.|.. ..+..+-++. +--+..|-.+ .+.-+.+||+|+++..+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~-~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKS-APD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHh-cCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeC
Confidence 58999999999999998863 221 0123333332 3333333332 1111122222 222236899999877664
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.. .....++-++-++|+|||++++.+
T Consensus 118 ~~------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NV------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Cc------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 345678999999999999999854
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00018 Score=72.04 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=78.1
Q ss_pred CCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcc--cccc---cccccccCCCCCCCccccccccC
Q 005959 513 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR--GFVG---VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 513 ~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~R--Glig---~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
...+++++++|||-|-|.+.|...-+.+.++-++|. -|..+-+| |+-. ...+-.+..|. .+|||||++.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~--~~FDLIV~SE 114 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHVEWIQADVPEFWPE--GRFDLIVLSE 114 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSEEEEES-TTT---S--S-EEEEEEES
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCeEEEECcCCCCCCC--CCeeEEEEeh
Confidence 468999999999999999999875455666655443 23223222 2111 11122333343 8999999999
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEE---EcCH-------HHHHHHHHHHhhCCCeeEEeeeccCC-CccEEE
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVII---RDTA-------RLIESARALTTRLKWDARVIEIESNS-DERLLI 656 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~---~d~~-------~~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~li 656 (667)
++--+. +.-.+..++-.|...|+|||.+|+ ||.. .--+.|.++...+-=++.-.+...++ .|.-|+
T Consensus 115 VlYYL~---~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T PF05401_consen 115 VLYYLD---DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLL 191 (201)
T ss_dssp -GGGSS---SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEE
T ss_pred HhHcCC---CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEe
Confidence 988776 445566678888899999999998 4322 12355556555554454444333333 355444
Q ss_pred E
Q 005959 657 C 657 (667)
Q Consensus 657 ~ 657 (667)
+
T Consensus 192 ~ 192 (201)
T PF05401_consen 192 A 192 (201)
T ss_dssp E
T ss_pred e
Confidence 4
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00094 Score=65.04 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=76.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH---------hcccccccccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---------LDRGFVGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~---------~~RGlig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
..|||+|||.|.++..|...+. +|+-.|-. ..+..+ -+||+.-+.+|+.+.++. .+||+|=++
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n 97 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK-----KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFN 97 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc-----eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEEC
Confidence 4799999999999999987433 34444433 333333 123355566778777654 589999655
Q ss_pred Ccccccc---------------CCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCeeEEee
Q 005959 587 GLLSLES---------------GHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 587 ~~~~~~~---------------~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
.-|.... +......+..++-++.|+|+|||++++--. ....+++.++....-|+.....
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 4432210 000122245688999999999999876422 2335677788888888766543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.004 Score=67.28 Aligned_cols=103 Identities=13% Similarity=-0.001 Sum_probs=69.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHHHcCC----C-ceE--EeecccC----CCC--CCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLERGL----P-AMI--GSFASKQ----LPY--PSLS 317 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g---~~~~sV~gvD~S~~ml~~A~ergl----~-~~~--~~~da~~----Lpf--pd~s 317 (667)
...++|+|||.|.=+..|++.- .....++++|+|.++++.+.++-. + +.+ .+++..+ ++- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 3589999999999877776541 123578999999999987765422 2 323 3444322 221 1235
Q ss_pred ccEEEecccccccccCH--HHHHHHHHh-cccCCeEEEEEeC
Q 005959 318 FDMLHCARCGVDWDQKD--GILLLEVDR-VLKPGGYFVWTSP 356 (667)
Q Consensus 318 FDlV~~s~~ll~~~~d~--~~~L~Ei~R-vLKPGG~Lvis~p 356 (667)
..+++.....+...+.. ..+|+++.+ .|+|||.|++..-
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 67777766545544333 368999999 9999999998753
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00052 Score=70.40 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=59.3
Q ss_pred eEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCC-CchhhHhcc----cc---c-ccccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDR----GF---V-GVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~~~~R----Gl---i-g~~~~~c~~f~typ~tyDl~H~~ 586 (667)
.+|||+|||.|.++..|.+.- .+- .+|+-+|-. .-+..+-++ +. + =+..|.++ ++. ..+|+|.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~--~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~~--~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VEI--KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCC--CCCCEEeee
Confidence 479999999999998887520 111 134444443 333333222 21 1 12223332 221 358999888
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
..+.... . -....+|-||-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~---~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLP---P-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCC---H-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7776543 1 1234789999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0027 Score=66.12 Aligned_cols=102 Identities=18% Similarity=0.150 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------CCCceEEeecccCC-CCCCC-CccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL-PYPSL-SFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---------gl~~~~~~~da~~L-pfpd~-sFDlV 321 (667)
.+++||=||-|.|..+..+++.. ...+++.+|+++.+++.|++- ..+..+...|+... .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46899999999999999998873 356799999999999998753 12445555554321 12233 89999
Q ss_pred EecccccccccC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 322 ~~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.-..- ..... -..+++.+.+.|+|||.+++...
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 986431 11111 14799999999999999998764
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0024 Score=66.81 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=64.9
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeeccc
Q 005959 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK 309 (667)
Q Consensus 233 y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~ 309 (667)
..+.+.+.....+ ..+|||||+|.|.+|..|++++ ..|+++++++.+++..+++. .+..+..+|+.
T Consensus 18 v~~kIv~~a~~~~--------~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaL 86 (259)
T COG0030 18 VIDKIVEAANISP--------GDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDAL 86 (259)
T ss_pred HHHHHHHhcCCCC--------CCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchh
Confidence 3455555554433 3899999999999999999985 34899999999998887763 45677888998
Q ss_pred CCCCCCC-CccEEEeccc
Q 005959 310 QLPYPSL-SFDMLHCARC 326 (667)
Q Consensus 310 ~Lpfpd~-sFDlV~~s~~ 326 (667)
..++++- .++.|+++.-
T Consensus 87 k~d~~~l~~~~~vVaNlP 104 (259)
T COG0030 87 KFDFPSLAQPYKVVANLP 104 (259)
T ss_pred cCcchhhcCCCEEEEcCC
Confidence 8888754 6899999854
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0037 Score=66.39 Aligned_cols=102 Identities=18% Similarity=0.082 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---------CceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---------PAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---------~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+++||-||-|.|..++.++++. ....++.+|+++..++.+++.-. .+.+...|... +.-...+||+|+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 34799999999999999999985 36789999999999999987521 12233333222 222234899999
Q ss_pred ecccccccccC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 323 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+-.. -...+. ...+++.+++.|+++|.++...-
T Consensus 155 ~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 155 VDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 8743 221111 15799999999999999999843
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00044 Score=71.56 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=68.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-cc-----cccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-----VLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig-----~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
-+|||++||+|=+|..+.+. .+ .-.|+-.|-. +-|-++-+|-- .| ..+.==|.+|.-.+|||++=++..+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~-~g--~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKS-VG--TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CEEEEecCCccHHHHHHHHh-cC--CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 47999999999999999873 22 4455666655 66666666643 12 1122224455334999999998777
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
-+.. +++..|=||-|||+|||-+++=
T Consensus 130 rnv~------d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 130 RNVT------DIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hcCC------CHHHHHHHHHHhhcCCeEEEEE
Confidence 6553 5678999999999999988764
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00038 Score=71.81 Aligned_cols=96 Identities=21% Similarity=0.233 Sum_probs=58.5
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--cccccccccCCCCCCCccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.|||++||+|-++-.|.+.-.+ .-.|+-.|-. +-|.++-+| |. |=....=.|.+|.-..|||.|=++..+.
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~--~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGP--NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred EEEEeCCChHHHHHHHHHHCCC--ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence 8999999999999888752111 1245555555 666666554 32 1111111344553238999999877766
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.. ++....|-||=|+|||||.++|=
T Consensus 128 n~------~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 128 NF------PDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp G-------SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred hh------CCHHHHHHHHHHHcCCCeEEEEe
Confidence 44 34567899999999999999974
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.012 Score=65.01 Aligned_cols=111 Identities=13% Similarity=0.107 Sum_probs=62.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cc-----ccccccccccCCCCCC-Cccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RG-----FVGVLHDWCEAFPTYP-RTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RG-----lig~~~~~c~~f~typ-~tyDl~H~ 585 (667)
..|||+|||+|-.+.+|.+. .|-. .|+-+|.. .-+..+-+ -+ -+-+++ ...++..+ .+||+|-|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~-~P~~--~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK-NPQA--KVVFVDESPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHh-CCCC--EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEE
Confidence 47999999999999998863 2221 23334433 22222211 01 122222 22233333 58999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcC--HHHHHHHHHH
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--ARLIESARAL 633 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--~~~~~~~~~~ 633 (667)
+-.|..-+.. ..-....++-+.-|+|+|||.+++--+ .+...+++++
T Consensus 305 NPPfh~~~~~-~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~ 353 (378)
T PRK15001 305 NPPFHQQHAL-TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKI 353 (378)
T ss_pred CcCcccCccC-CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHH
Confidence 8777543200 001123577889999999999998532 2334455543
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.003 Score=67.33 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhc------CCceeEEEEecCCHHHHHHHHHc----CCC
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQVQLTLER----GLP 300 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~------g~~~~sV~gvD~S~~ml~~A~er----gl~ 300 (667)
....+.+.+++... ...+|||-.||+|.|...+.+. ......+.|+|.++.++..|+.+ +..
T Consensus 32 ~~i~~l~~~~~~~~--------~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNPK--------KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhcc--------ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 34444555555433 3368999999999998887763 12356799999999998877632 322
Q ss_pred c---eEEeecccCCCCC--CCCccEEEecccccc--cc-----c------------CH-HHHHHHHHhcccCCeEEEEEe
Q 005959 301 A---MIGSFASKQLPYP--SLSFDMLHCARCGVD--WD-----Q------------KD-GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 301 ~---~~~~~da~~Lpfp--d~sFDlV~~s~~ll~--~~-----~------------d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
. .+...+.-..+.. .+.||+|+++.-.-. |. . .. -.++..+.+.|++||++++..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 2 2444554333322 478999999732111 10 0 01 247888999999999998887
Q ss_pred C
Q 005959 356 P 356 (667)
Q Consensus 356 p 356 (667)
|
T Consensus 184 p 184 (311)
T PF02384_consen 184 P 184 (311)
T ss_dssp E
T ss_pred c
Confidence 7
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0047 Score=67.82 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=63.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCC-C-CC-------------
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-YP------------- 314 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L-p-fp------------- 314 (667)
.+|||++||+|.++..+++.. ..|+++|.++.+++.|+++ ++ ++.+..+|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 479999999999999888762 4799999999999888754 44 456666666442 1 10
Q ss_pred -CCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 315 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 315 -d~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
...||+|+.---.- .-.+.++..+.+ |++.++++..
T Consensus 285 ~~~~~D~v~lDPPR~---G~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 285 KSYNFSTIFVDPPRA---GLDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred cCCCCCEEEECCCCC---CCcHHHHHHHHc---cCCEEEEEeC
Confidence 22589998764311 112345555544 7888888765
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0047 Score=67.62 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=62.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--------C---C----
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--------Y---P---- 314 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--------f---p---- 314 (667)
.+|||++||+|.++..|++.. ..|+++|.++.+++.|+++ ++ ++.+..+++..+- + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888763 3799999999999888764 33 3556666655421 1 0
Q ss_pred -CCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 315 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 315 -d~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
...||+|+.---.- .-...++..+. +|+++++++..
T Consensus 276 ~~~~~d~v~lDPPR~---G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPPRA---GLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCCCC---CCcHHHHHHHH---cCCcEEEEEcC
Confidence 11379888753211 11134555544 47888888865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0021 Score=68.02 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=83.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc----cccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF----VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl----ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|.++-+|... .+- .+|+-+|-. ..+.++-+ .|+ -=+..||.++++. ..||+|-++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~-~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYE-FPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECC
Confidence 36999999999999999863 221 234455544 44444433 233 1233678777643 4799987752
Q ss_pred ccccccC----------CCCCC---------CcchhheeccccccCCcEEEEEcCHHHHHHHHHHHh-hCCCeeEEeeec
Q 005959 588 LLSLESG----------HRHRC---------STLDIFTEIDRILRPEGWVIIRDTARLIESARALTT-RLKWDARVIEIE 647 (667)
Q Consensus 588 ~~~~~~~----------~~~~c---------~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~-~~~W~~~~~~~~ 647 (667)
=+..... ....+ .+..++-+.-++|+|||++++.-....-+.++++.. ...|.......+
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D 270 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRD 270 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecC
Confidence 2111000 00000 123577788899999999999766666667777666 456754333334
Q ss_pred cCCCccEEEEEc
Q 005959 648 SNSDERLLICQK 659 (667)
Q Consensus 648 ~~~~~~~li~~K 659 (667)
-.+.++++++++
T Consensus 271 ~~g~~R~~~~~~ 282 (284)
T TIGR00536 271 LNGKERVVLGFY 282 (284)
T ss_pred CCCCceEEEEEe
Confidence 556788888764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.003 Score=63.81 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=61.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+-||.|.|+..+++.+ ....|.++|.++..++..++ .++. +....+|+..+.. .+.||-|+++.-
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp- 178 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP- 178 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-
T ss_pred ceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-
Confidence 4799999999999999999842 24569999999998876653 3443 3456778777655 789999998743
Q ss_pred cccccCHHHHHHHHHhcccCCeEEE
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
.....+|..+.+++++||.+-
T Consensus 179 ----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHhcCCcEEE
Confidence 223358889999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.003 Score=63.98 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=54.2
Q ss_pred eEEEeccccchhhhhhhhhcC---CCeEEEEeecCCCCCchhhHhccccccccccccc---------CCCCCCCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE---------AFPTYPRTYDLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~---------~f~typ~tyDl~H 584 (667)
.+|||+|||.|+|...|.+.. ..|..+-+.|... + .|+.-+-.|... ++. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~---~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDP---I-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccC---C-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 379999999999988887631 1244444433111 1 122222233332 233 26899999
Q ss_pred ccCccccccCCCCCC--------CcchhheeccccccCCcEEEEE
Q 005959 585 AEGLLSLESGHRHRC--------STLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 585 ~~~~~~~~~~~~~~c--------~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
++....... ... ....+|-|+=|+|+|||.|++.
T Consensus 123 S~~~~~~~g---~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 123 SDMAPNMSG---TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred cCCCCccCC---ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 865322111 111 1246889999999999999995
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00083 Score=68.85 Aligned_cols=88 Identities=23% Similarity=0.202 Sum_probs=60.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCCCCccccccccCccccccCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
.+|||+|||+|-++..|.+.. . -+|+-+|-. +-|..+-+++ ...+.-.+.+|.=+.+||+|.++..+.+.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~-~---~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~--- 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF-K---YYVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHAS--- 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc-C---CEEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhcc---
Confidence 479999999999999987621 1 256666765 5566655553 11223334444334899999998776433
Q ss_pred CCCCCcchhheeccccccCCc
Q 005959 596 RHRCSTLDIFTEIDRILRPEG 616 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G 616 (667)
-+.+..|-||.|+|||.+
T Consensus 124 ---~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 ---DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---CCHHHHHHHHHHHhcCce
Confidence 346789999999999954
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0006 Score=66.14 Aligned_cols=136 Identities=16% Similarity=0.278 Sum_probs=86.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-CCC--ceEEee-------cccCCCCCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLP--AMIGSF-------ASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-gl~--~~~~~~-------da~~Lpfpd~sFDlV~~ 323 (667)
+++|||+|.|.-.++..|.....+..+|...|-++..++..++- ..+ ..+... ...+......+||.|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 37899999997666666665556778899999998888655431 111 101000 01112234468999999
Q ss_pred cccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeecc-CceEEEeecc
Q 005959 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ-DETVVWKKTS 401 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~~-~~~~IwqK~~ 401 (667)
+.| +-+.+..+.++..|++.|+|.|..++..|-... . -+....+.+..++....+. .+..|||+..
T Consensus 110 ADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~-------s----L~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 110 ADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ-------S----LQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred ccc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccc-------h----HHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 999 444555678999999999999998888774322 1 1223344555566665553 3456777643
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0025 Score=69.35 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=73.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc---cccccccccCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl---ig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
..|||+|||.|.++..+.+. .+- -+|+-+|.. +.+..+-++.- +-+++.=.+.++.-+.+||+|-+...+..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~-~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKH-VDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 47999999999998887652 111 134444543 44554444320 111221122233324799999988777665
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEcCH-----------------HHHHHHHHHHhhCCCeeEEe
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------------RLIESARALTTRLKWDARVI 644 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------------~~~~~~~~~~~~~~W~~~~~ 644 (667)
. +...+|-|+-|+|+|||.+++.+.. ...+++.+++++.-++....
T Consensus 192 ~------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 P------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred C------CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 4 2246899999999999999875321 12366777778878875544
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00083 Score=70.19 Aligned_cols=97 Identities=23% Similarity=0.284 Sum_probs=55.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccc--c-ccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG--V-LHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig--~-~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|..+..+...-.+- ..|+-+|-. ..+..+-++ |+-. . ..|. +.++.-+.+||+|++..+
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~--~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPT--GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCc
Confidence 499999999987554333210110 123333332 444444332 3210 0 1222 223322379999998877
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.+.. +...++-|+-|+|||||.+++.|
T Consensus 156 ~~~~~------d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSP------DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 65432 23568999999999999999964
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0017 Score=64.94 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=83.5
Q ss_pred ccCcccccc--chhhhHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEeccccchhhhhhhhhc-CCCeEEEE
Q 005959 468 GVHPEEFAE--DTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEK-GKSVWVMN 544 (667)
Q Consensus 468 ~~~~~~f~~--d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~~g~faa~l~~~-~~~vwvmn 544 (667)
|.....|.. +...++..++.- .+..+ .+..+ -.|||||||.|.|+..+... +.. -.
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~--~l~~l--------------~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~---~~ 67 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRAL--ALSKL--------------RLRKG--DMILDIGCGTGSVTVEASLLVGET---GK 67 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHH--HHHHc--------------CCCCc--CEEEEeCCcCCHHHHHHHHHhCCC---CE
Confidence 455556665 456888877532 12211 11112 37999999999998776431 011 12
Q ss_pred eecCCCC-CchhhHhc----ccccc----cccccccCCCCCCCccccccccCccccccCCCCCCCcchhheeccccccCC
Q 005959 545 VVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPE 615 (667)
Q Consensus 545 v~p~~~~-~~l~~~~~----RGlig----~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~ 615 (667)
|+-+|-. ..+..+-+ -|+.. +..|..+..+.++..||.|...+ ....+..++-++-|+|+||
T Consensus 68 v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---------~~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 68 VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG---------GSEKLKEIISASWEIIKKG 138 (198)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC---------CcccHHHHHHHHHHHcCCC
Confidence 3333332 23332221 13211 11233333333445788887632 1134457888999999999
Q ss_pred cEEEEE-cCHHHHHHHHHHHhhCCCeeEEee
Q 005959 616 GWVIIR-DTARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 616 G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
|.+++. -+.+.+.++...++.+.++..+.+
T Consensus 139 G~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 139 GRIVIDAILLETVNNALSALENIGFNLEITE 169 (198)
T ss_pred cEEEEEeecHHHHHHHHHHHHHcCCCeEEEE
Confidence 999983 345667788887877777665553
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00067 Score=68.34 Aligned_cols=95 Identities=14% Similarity=0.186 Sum_probs=58.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--cccc-cccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig~~-~~~c~~f~typ~tyDl~H~~~~ 588 (667)
-+|||+|||.|.++..|.+.... ++-+|.. ..+..+-++ |+ +-.. .|..+-....+.+||+|.+.++
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~-----v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGAN-----VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCe-----EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 47999999999999988763222 2223322 222222221 22 1111 1111111122578999999887
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.... +...+|-++.++|+|||++++.+
T Consensus 122 l~~~~------~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 122 LEHVP------DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHhCC------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 76543 44578899999999999999875
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0006 Score=70.60 Aligned_cols=100 Identities=9% Similarity=0.094 Sum_probs=58.5
Q ss_pred eEEEeccccchhhhhhhhhc-CCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCC-CccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYP-RTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ-~tyDl~H~~~~~ 589 (667)
..|||+|||.|.++.+|... ..+-+ .|+-+|.. .-+..+-+| |+-.-..-.|..+...| ..||+|-++.++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 46999999999998887641 01211 34444443 333333322 22111111122222222 358998887666
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.... ......++-||-|+|+|||.+++.|
T Consensus 136 ~~l~----~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 136 QFLE----PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HhCC----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6543 1234579999999999999999986
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0031 Score=63.57 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=57.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cccc-cccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig~~-~~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|.++..+.... +- .-.|+-+|-. +.+..+-++ ++ +-++ .|..+ ++.=+.+||+|.++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~-~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAV-GK-TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHc-CC-CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEec
Confidence 469999999999998887631 10 0123333322 222222221 11 1111 22221 222136899999877
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++... .....+|-++-++|+|||.+++.+
T Consensus 130 ~l~~~------~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLRNV------PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccccC------CCHHHHHHHHHHhccCCcEEEEEE
Confidence 66433 456678899999999999998753
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0021 Score=67.45 Aligned_cols=135 Identities=13% Similarity=0.158 Sum_probs=80.7
Q ss_pred CccccccchhhhHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEeccccch----hhhhhhhhcCC--CeEEE
Q 005959 470 HPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG----GFNSALLEKGK--SVWVM 543 (667)
Q Consensus 470 ~~~~f~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~~g----~faa~l~~~~~--~vwvm 543 (667)
+...|--|..+|..-.+.....+.... ..+.--.|+|+|||+| +.|-.|.+... .-|..
T Consensus 69 ~~T~FfR~~~~~~~l~~~vlp~l~~~~---------------~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~ 133 (264)
T smart00138 69 NETRFFRESKHFEALEEKVLPLLIASR---------------RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDV 133 (264)
T ss_pred CCCcccCCcHHHHHHHHHHhHHHHHhc---------------CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCe
Confidence 445688888888876655443221110 0112357999999999 46666655211 12344
Q ss_pred EeecCCCC-CchhhHhccccc-----------------------------------ccccccccCCCCCCCccccccccC
Q 005959 544 NVVPTIGT-NHLPMILDRGFV-----------------------------------GVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 544 nv~p~~~~-~~l~~~~~RGli-----------------------------------g~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.|+-+|-. .-|..+- +|+- =..||-.+.-+ -+..||+|.|..
T Consensus 134 ~I~g~Dis~~~L~~Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crn 211 (264)
T smart00138 134 KILATDIDLKALEKAR-AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRN 211 (264)
T ss_pred EEEEEECCHHHHHHHH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEech
Confidence 56666654 3343332 2210 01344444322 147899999998
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcCHH
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR 625 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~ 625 (667)
+|.... .-....++-++-|+|+|||++++-....
T Consensus 212 vl~yf~----~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 212 VLIYFD----EPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred hHHhCC----HHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 887653 1223469999999999999999976553
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0011 Score=67.56 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=61.0
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccc--cccccccCCCCCCCccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG--VLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig--~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.|||+|||.|.++..|.+.. .+++-+|.. +.+..+-++ |+-. ...++.+-....+.+||+|.++.++.
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~-----~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLG-----ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcC-----CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 58999999999999998632 244444443 344433332 3211 12223222112236899999988877
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
... +...+|-++.|+|+|||.+++..
T Consensus 126 ~~~------~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 126 HVP------DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccC------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 654 34578899999999999999874
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0057 Score=60.92 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=65.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeeccc-CCC---CCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASK-QLP---YPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~-~Lp---fpd~sFDlV~~ 323 (667)
+.++||+=||+|.++...+.+|. ..++.+|.+...++..++. +.. ..+...|+. .++ .....||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 48999999999999999999985 4689999999988766543 332 344444532 222 24679999998
Q ss_pred cccccccccCHHHHHHHHH--hcccCCeEEEEEeC
Q 005959 324 ARCGVDWDQKDGILLLEVD--RVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~--RvLKPGG~Lvis~p 356 (667)
--- +........++..+. .+|+++|.+++...
T Consensus 121 DPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 121 DPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp --S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 754 222111256777776 89999999999765
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0022 Score=70.83 Aligned_cols=119 Identities=17% Similarity=0.112 Sum_probs=72.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-----CchhhHhccccc---cccccc---ccCCCCCCCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-----NHLPMILDRGFV---GVLHDW---CEAFPTYPRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-----~~l~~~~~RGli---g~~~~~---c~~f~typ~tyDl~H~ 585 (667)
..+||+|||.|.|..+|....... |++=.+-. ....-+.++|+- -+..|- .+.|+. .++|.|++
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~---~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~--~s~D~I~l 198 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK---LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS--NSVEKIFV 198 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC---CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC--CceeEEEE
Confidence 479999999999999998642111 33333332 122334455641 122333 234553 89999997
Q ss_pred cCccccccCCCCC-CCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhC-CCee
Q 005959 586 EGLLSLESGHRHR-CSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL-KWDA 641 (667)
Q Consensus 586 ~~~~~~~~~~~~~-c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~-~W~~ 641 (667)
..- ..|...++| =-...+|-|+-|+|+|||.+.++ |..+..+.+.+..... +++.
T Consensus 199 nFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 199 HFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred eCC-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 522 445433332 11257899999999999999986 6666666665554443 5554
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00076 Score=78.37 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=62.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc-cccccccccCCCC-C-CCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVLHDWCEAFPT-Y-PRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl-ig~~~~~c~~f~t-y-p~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++.+|... .+ ..+|+-.|-. +.+..+-++ |. +-+++.=+..++. + |.+||+|.++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~-~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEE-TE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHh-CC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 47999999999998888652 22 1244444544 334433332 21 1111111223342 2 489999998877
Q ss_pred ccccc----CCCC---CCCcchhheeccccccCCcEEEEEcC
Q 005959 589 LSLES----GHRH---RCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 589 ~~~~~----~~~~---~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
+..+- ..+. .-.+..+|-|+-|+|+|||.+++.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 65431 0001 12455789999999999999999874
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00076 Score=67.67 Aligned_cols=122 Identities=15% Similarity=0.273 Sum_probs=72.9
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCC--CCCCccccccccCccccccCC
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFP--TYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~--typ~tyDl~H~~~~~~~~~~~ 595 (667)
.|||+|||-|--|-+|.+.+.+|-..-..+..-.....++-++||- ++.++--+. .+|..||+|.+..+|-...
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~-- 108 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQ-- 108 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS---
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccCC--
Confidence 7999999999999999986654443333222211223355567773 333333222 2468999999887776654
Q ss_pred CCCCCcchhheeccccccCCcEEEEE---c--------CHHHHHHHHHHHhhCC-CeeEEee
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIR---D--------TARLIESARALTTRLK-WDARVIE 645 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~---d--------~~~~~~~~~~~~~~~~-W~~~~~~ 645 (667)
+-.++.|+-.|-.-++||||+++- + +.+..-+-.+|..-.. |++...+
T Consensus 109 --~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~ 168 (192)
T PF03848_consen 109 --RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYN 168 (192)
T ss_dssp --GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEE
T ss_pred --HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEE
Confidence 456778889999999999999883 1 1233333334444443 9987654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0062 Score=67.85 Aligned_cols=139 Identities=9% Similarity=0.078 Sum_probs=84.9
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cccccccccC-CCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEA-FPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~c~~-f~typ~tyDl~H~~~~~ 589 (667)
+|||+|||+|.++.+|... .+- .+|+-+|-. ..+..+-+ .|+ .=+-.|+.+. ++. ..+||+|-|+--+
T Consensus 254 rVLDLGcGSG~IaiaLA~~-~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~-~~~FDLIVSNPPY 329 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALE-RPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPS-EGKWDIIVSNPPY 329 (423)
T ss_pred EEEEEeChhhHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccccc-CCCccEEEECCCC
Confidence 7999999999999888742 221 234444543 44443332 232 1233466543 221 2479999986644
Q ss_pred ccccCC----------------CCCCC---cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeeccCC
Q 005959 590 SLESGH----------------RHRCS---TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS 650 (667)
Q Consensus 590 ~~~~~~----------------~~~c~---~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 650 (667)
...... +..-. +..++-+.-+.|+|||++++.-..+.-++++++++...|+......+-.+
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 221100 00011 12455566788999999998656667778888888888876555556666
Q ss_pred CccEEEEEcc
Q 005959 651 DERLLICQKP 660 (667)
Q Consensus 651 ~~~~li~~K~ 660 (667)
.+++++.++.
T Consensus 410 ~dR~v~~~~~ 419 (423)
T PRK14966 410 LDRVTLGKYM 419 (423)
T ss_pred CcEEEEEEEh
Confidence 7999988753
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0041 Score=59.53 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=56.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+..++|+|||.|-+....+-. ..-.+.|+|+.++.++.+.++. +++.+.+++...+-+..+.||.++.+.-
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 4588999999999988554433 3457899999999999886553 4566788888888888899999998743
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0023 Score=63.81 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=68.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hccccccc--c-cccccCC-CCCC-Ccccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGV--L-HDWCEAF-PTYP-RTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGlig~--~-~~~c~~f-~typ-~tyDl~H~~ 586 (667)
+.|||+|||.|.|+.+|... .|- .||+-+|-. .-+..+ -..|+-.+ . .|.-+-. ..+| .++|.|+..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~-~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQ-NPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHh-CCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 57999999999999999863 221 133333332 222222 22333111 1 1111100 1134 489998865
Q ss_pred CccccccC---CCCCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhh-CCCeeE
Q 005959 587 GLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTR-LKWDAR 642 (667)
Q Consensus 587 ~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~-~~W~~~ 642 (667)
.. ..|.. ...|.....+|-|+-|+|+|||.+++. |.....+.+.+.... -+|+..
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 32 22321 113555678899999999999999986 666556665554433 335543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0055 Score=65.51 Aligned_cols=56 Identities=7% Similarity=0.115 Sum_probs=44.1
Q ss_pred HHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005959 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (667)
Q Consensus 234 ~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er 297 (667)
.+++.+.+...+ ...+||.+||.|..+..+++..-....|+|+|.++.+++.|+++
T Consensus 8 l~Evl~~L~~~p--------g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 8 LDEVVDALAIKP--------DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred HHHHHHhhCCCC--------CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 345555554333 36999999999999999998843356799999999999999875
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.011 Score=64.16 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=63.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
.+.++|||||++|.+|..|+++|. .|+++|..+ |-... .....+.....+.....-+.+.+|+|+|-.+ .
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~L-~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQSL-MDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHhh-hCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 568999999999999999999974 689999553 33222 2223455544444333222678999999854 4
Q ss_pred CHHHHHHHHHhcccCC--eEEEEEe
Q 005959 333 KDGILLLEVDRVLKPG--GYFVWTS 355 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPG--G~Lvis~ 355 (667)
.+.+.+.-+.+.|..| ..+|+.-
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEE
Confidence 5667777788888776 4555554
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0016 Score=61.88 Aligned_cols=98 Identities=18% Similarity=0.300 Sum_probs=62.6
Q ss_pred eEEEeccccchhhhhhhhh-cCCCeEEEEeecCCCC-CchhhHhc----cccc---ccccccccCCCC-CCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLE-KGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPT-YPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~-~~~~vwvmnv~p~~~~-~~l~~~~~----RGli---g~~~~~c~~f~t-yp~tyDl~H~~ 586 (667)
-+|||+|||+|-+.=.|.+ .....= ++=+|-. ..+..+-. .|+- -...|.-+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~---i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAK---IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSE---EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCE---EEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4799999999999999883 111222 3333433 44444433 3441 12233333 332 44889999999
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
.++... .....+|-+|=|.|+|+|.+++.+-.
T Consensus 81 ~~l~~~------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888433 34557888999999999999998765
|
... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0066 Score=61.61 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=63.5
Q ss_pred ccccc-hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------
Q 005959 225 LIFDG-VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------ 297 (667)
Q Consensus 225 ~~yd~-~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er------ 297 (667)
..|.. .......+.+.+...+ ....+|||||.|......+-. .......|+++.+...+.|.+.
T Consensus 21 ~~YGEi~~~~~~~il~~~~l~~--------~dvF~DlGSG~G~~v~~aal~-~~~~~~~GIEi~~~~~~~a~~~~~~~~~ 91 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNLTP--------DDVFYDLGSGVGNVVFQAALQ-TGCKKSVGIEILPELHDLAEELLEELKK 91 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT--T--------T-EEEEES-TTSHHHHHHHHH-H--SEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHHHHHHHHhCCCC--------CCEEEECCCCCCHHHHHHHHH-cCCcEEEEEEechHHHHHHHHHHHHHHH
Confidence 34533 2344444555555433 379999999999987766643 1234478999998876555321
Q ss_pred -----CC---CceEEeecccCCCCCC---CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 298 -----GL---PAMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 298 -----gl---~~~~~~~da~~Lpfpd---~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
|. ++.+..+|....++.. ..-|+|+++... +.++....|.++..-||+|-+++-..
T Consensus 92 ~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 92 RMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp HHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred HHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEECC
Confidence 22 2233444433322111 246999998653 34555677888889999988876443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0018 Score=69.12 Aligned_cols=101 Identities=15% Similarity=0.224 Sum_probs=62.7
Q ss_pred CceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhH----hcccccccccccccCC--CCCCCccccccccC
Q 005959 514 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMI----LDRGFVGVLHDWCEAF--PTYPRTYDLVHAEG 587 (667)
Q Consensus 514 ~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~----~~RGlig~~~~~c~~f--~typ~tyDl~H~~~ 587 (667)
...+.|||+|||.|.++.++.+. .|-. +++-.|-+..+..+ -+.|+-.-++-.+--| ..+| .+|++-.++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~-~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH-FPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH-CCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEh
Confidence 34679999999999999999873 3322 23333433333333 3345532222222222 1234 379988777
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++..|.. -....+|-++-|.|+|||.++|-|
T Consensus 224 ~lh~~~~----~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 224 ILYSANE----QLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhcCCh----HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7766651 122358889999999999999875
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.007 Score=62.24 Aligned_cols=91 Identities=14% Similarity=0.199 Sum_probs=50.5
Q ss_pred EEEeccccchhhhhhhhhcC--CCeEEEEeecCCCCCchh----hHhcc-cccccccccccCC--CCCCCccccccccCc
Q 005959 518 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLP----MILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGL 588 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~--~~vwvmnv~p~~~~~~l~----~~~~R-Glig~~~~~c~~f--~typ~tyDl~H~~~~ 588 (667)
.|||+|||.|++..+|.+.- ..|+.+-+-| .-+. .+-+| .+.-+..|-.++. ...+.+||.|-++..
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVA 150 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCC
Confidence 69999999999999998621 1233332222 2122 22222 2334444544431 112456887643211
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
..+ ....+|-|+-|+|+|||+++|
T Consensus 151 -~p~-------~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 151 -QPN-------QAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred -Chh-------HHHHHHHHHHHhcCCCcEEEE
Confidence 000 112346799999999999999
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.024 Score=65.24 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=46.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC-------ceeEEEEecCCHHHHHHHHHc----C-CCceEEeecccC--C---CCCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKEL-------LTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQ--L---PYPSL 316 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~-------~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~--L---pfpd~ 316 (667)
..+|||.+||+|.+...++++.. ....+.++|+++..+..++.. + ....+...+... . .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 46899999999999988876521 136789999999999877654 1 122222222111 0 11124
Q ss_pred CccEEEecc
Q 005959 317 SFDMLHCAR 325 (667)
Q Consensus 317 sFDlV~~s~ 325 (667)
.||+|+++-
T Consensus 112 ~fD~IIgNP 120 (524)
T TIGR02987 112 LFDIVITNP 120 (524)
T ss_pred cccEEEeCC
Confidence 799999984
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0035 Score=63.80 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=68.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
-.|||+|||.|.++..+... .. -+|+-+|-. ..+..+-+ .|+ .-+..|+.+.++. .+||+|.++--|
T Consensus 38 ~~vLDlGcG~G~~~~~la~~--~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~--~~fD~Vi~npPy 111 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAA--GA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEF--RPFDVVVSNPPY 111 (223)
T ss_pred CeEEEecCCHHHHHHHHHHc--CC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccC--CCeeEEEECCCC
Confidence 37999999999999888752 21 123333332 33332222 233 1223466555442 689999997543
Q ss_pred ccccC--------------CC-CCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhCCCeeEEe
Q 005959 590 SLESG--------------HR-HRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 590 ~~~~~--------------~~-~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
..-.. +. ..+.+..++-++-|+|+|||.+++- .+....+++..++++-.|++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 32110 00 0112345677899999999999983 22223445555555556654443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0031 Score=63.85 Aligned_cols=109 Identities=16% Similarity=0.169 Sum_probs=60.1
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCCCccccccccCccccccCC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
--.|=|||||-|-.|+++-. +..|.-.-++..+..-|. -|=. --|++. .+.|++=+ |+|+-.
T Consensus 73 ~~viaD~GCGdA~la~~~~~-~~~V~SfDLva~n~~Vta---cdia--------~vPL~~--~svDv~Vf--cLSLMG-- 134 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN-KHKVHSFDLVAPNPRVTA---CDIA--------NVPLED--ESVDVAVF--CLSLMG-- 134 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S----EEEEESS-SSTTEEE---S-TT--------S-S--T--T-EEEEEE--ES---S--
T ss_pred CEEEEECCCchHHHHHhccc-CceEEEeeccCCCCCEEE---ecCc--------cCcCCC--CceeEEEE--EhhhhC--
Confidence 34899999999999998853 234555555554432111 1100 023343 78888644 566533
Q ss_pred CCCCCcchhheeccccccCCcEEEEEcCHHHH---HHHHHHHhhCCCeeEEee
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLI---ESARALTTRLKWDARVIE 645 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~---~~~~~~~~~~~W~~~~~~ 645 (667)
=+..+.+.|-.|||||||.++|-+-.... +.-.+..+++-.++...|
T Consensus 135 ---Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 135 ---TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp ---S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred ---CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 35568999999999999999997655443 344456677888887765
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0051 Score=64.14 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=78.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccccccccccCCCC-CCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPT-YPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig~~~~~c~~f~t-yp~tyDl~H~~~~~~ 590 (667)
.+|+|+|||+|.++-+|... .+- .+|+-+|.. ..+..+-+ -|+--+-.|+.+.++. ....||+|=++--+.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~-~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAA-LDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 36999999999999888752 221 133444443 33333222 2321133455544432 234699998765443
Q ss_pred cccC----------CCCCCC----------cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeeccC
Q 005959 591 LESG----------HRHRCS----------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESN 649 (667)
Q Consensus 591 ~~~~----------~~~~c~----------~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~~ 649 (667)
.... ...+.. +..++-...++|+|||.+++--..+...++..++....|+..+..+++-
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 2110 000111 2367777889999999999876566677888888888888887765543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.016 Score=64.25 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=76.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCC-C---CCCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-P---YPSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~L-p---fpd~sFDlV~ 322 (667)
+++|||+=|=||.|+.+.+..|. .+|+.+|.|...++.|+++ |+ ...++++|+-.. . -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 48999999999999999998874 3689999999999998865 33 245676665332 1 2234899999
Q ss_pred ecccccc--------cccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGVD--------WDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll~--------~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.---.+. ...+...++..+.++|+|||.++++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 8532221 12333468899999999999999987644
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.026 Score=59.12 Aligned_cols=103 Identities=13% Similarity=0.063 Sum_probs=73.1
Q ss_pred hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEee
Q 005959 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSF 306 (667)
Q Consensus 230 ~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~ 306 (667)
.....+.+.+.+....+ ..|||||+|+|.+|..|++.+ ..++++|.++.+++..+++. .++.+...
T Consensus 15 ~~~~~~~Iv~~~~~~~~--------~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~ 83 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEG--------DTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVING 83 (262)
T ss_dssp HHHHHHHHHHHHTCGTT--------SEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES
T ss_pred CHHHHHHHHHhcCCCCC--------CEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeec
Confidence 35566777777765443 899999999999999999985 57899999999998888753 46677888
Q ss_pred cccCCCCCC---CCccEEEecccccccccCHHHHHHHHHhcccC
Q 005959 307 ASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKP 347 (667)
Q Consensus 307 da~~Lpfpd---~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKP 347 (667)
|+..+..++ +.-..|+++.- ++. ...++..+...-+.
T Consensus 84 D~l~~~~~~~~~~~~~~vv~NlP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGNLP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEEET-GTG---HHHHHHHHHHHGGG
T ss_pred chhccccHHhhcCCceEEEEEec-ccc---hHHHHHHHhhcccc
Confidence 888877654 45567777633 221 23566666653333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0017 Score=54.72 Aligned_cols=95 Identities=22% Similarity=0.237 Sum_probs=56.3
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh---cccc---cccc-cccccCCCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DRGF---VGVL-HDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~---~RGl---ig~~-~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
+|+|+|||.|++...+.+ .+. .++.-.|-. +.+..+. +.+. +-++ .|+...-..-+.+||++.++..+
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 489999999999999986 111 233333332 2222222 1111 1111 22222221134789999998887
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.... -....++-.+.+.|||||++++.
T Consensus 77 ~~~~-----~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLV-----EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehh-----hHHHHHHHHHHHHcCCCCEEEEE
Confidence 6521 13346788889999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0013 Score=67.47 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=67.4
Q ss_pred CCCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcc-cccccccccccCCCCCCCccccccccCccc
Q 005959 512 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 512 ~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~R-Glig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.+..+++|+|+|+|.|.|+++++.. .|=+ .++-.|-|..+..+.+. .+--+=||. |.++|. +|++...+++.
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~-~P~l--~~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vLh 169 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARA-YPNL--RATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVLH 169 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHH-STTS--EEEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSGG
T ss_pred cccCccEEEeccCcchHHHHHHHHH-CCCC--cceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehhhh
Confidence 4677899999999999999999974 4533 23444545444444431 122233333 355556 99999999999
Q ss_pred cccCCCCCCCcchhheeccccccCC--cEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPE--GWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~--G~~i~~d 622 (667)
.|.. +.|. .||--+=+.|+|| |.++|-|
T Consensus 170 ~~~d--~~~~--~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 170 DWSD--EDCV--KILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GS-H--HHHH--HHHHHHHHHSEECTTEEEEEEE
T ss_pred hcch--HHHH--HHHHHHHHHhCCCCCCeEEEEe
Confidence 9974 3343 5899999999999 9999854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0028 Score=63.86 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=52.1
Q ss_pred eEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhh----Hhcccccc---cc-cccccCCCCCCCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPM----ILDRGFVG---VL-HDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~----~~~RGlig---~~-~~~c~~f~typ~tyDl~H~ 585 (667)
..|||+|||+|.+++.|.+. +..|..+-+.| +.+.. +...|+-. ++ .|-.+.++. ..+||.|.+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~----~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~ 148 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK----ELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIV 148 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEE
Confidence 36999999999999888652 11233333332 22221 22335422 22 244444443 368999998
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
...+... .=|+-|+|+|||.+++-
T Consensus 149 ~~~~~~~------------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 149 TAAASTI------------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred ccCcchh------------hHHHHHhcCcCcEEEEE
Confidence 6554322 23566999999999984
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0028 Score=64.70 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=63.5
Q ss_pred eeEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCC-CchhhHhcccc---cccccccccCCCCCCCccccccccCccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~~~~RGl---ig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
-.+|||+|||.|.++..|.+.- +.-...+|+-+|-. +.+..+.++.- +-+...=++.++.-+.+||+|-|+.+|.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 4689999999999988876410 00112356777765 66666655421 1111111234444358999999999987
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.. +. .+..+|-||-|++| |.+++.|
T Consensus 141 h~~---d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 141 HLD---DA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cCC---hH-HHHHHHHHHHHhcC--eeEEEec
Confidence 765 21 24468999999999 5556554
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0021 Score=66.08 Aligned_cols=113 Identities=15% Similarity=0.054 Sum_probs=77.0
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccccccccccc--------ccCCCCCCCccccccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDW--------CEAFPTYPRTYDLVHA 585 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~--------c~~f~typ~tyDl~H~ 585 (667)
.-|.+.|+|||.| +||..+..- -=+|+-+|.. .+|+++- -+.--+||.- -+++..=+.+-|||-|
T Consensus 33 ~h~~a~DvG~G~G-qa~~~iae~----~k~VIatD~s~~mL~~a~-k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 33 GHRLAWDVGTGNG-QAARGIAEH----YKEVIATDVSEAMLKVAK-KHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred CcceEEEeccCCC-cchHHHHHh----hhhheeecCCHHHHHHhh-cCCCcccccCCccccccccccccCCCcceeeehh
Confidence 4679999999999 888777521 2367777876 7887543 3333333333 2444444799999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCc-EEE---EEcCHHHHHHHHHHHhhCCCe
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEG-WVI---IRDTARLIESARALTTRLKWD 640 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G-~~i---~~d~~~~~~~~~~~~~~~~W~ 640 (667)
..|+. =|+++..+-++-|||||.| .+. .+|+.-.+-++-++..+++|+
T Consensus 107 Aqa~H-------WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 107 AQAVH-------WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhHH-------hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 98874 3677889999999999999 222 355554555666666666664
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0043 Score=55.88 Aligned_cols=91 Identities=21% Similarity=0.148 Sum_probs=53.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hccccc--cc-ccc--cccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFV--GV-LHD--WCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGli--g~-~~~--~c~~f~typ~tyDl~H~~ 586 (667)
.+|||+|||.|.++..+.+. .+- .+|+-.|-. ..+..+ -..|+- -+ ..| |+.+ .-+.+||.|=+.
T Consensus 21 ~~vldlG~G~G~~~~~l~~~-~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~ 95 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARL-VPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIG 95 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHH-CCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEEC
Confidence 48999999999999999863 221 234444433 333222 112321 11 112 2222 223579988664
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
..... +..++-++-|.|+|||++++.
T Consensus 96 ~~~~~---------~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGGL---------LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred Ccchh---------HHHHHHHHHHHcCCCCEEEEE
Confidence 43322 236889999999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0015 Score=63.08 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=45.7
Q ss_pred cccCCCCCCCCccEEEecccccccccC-HHHHHHHHHhcccCCeEEEEEeCCCChh
Q 005959 307 ASKQLPYPSLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (667)
Q Consensus 307 da~~Lpfpd~sFDlV~~s~~ll~~~~d-~~~~L~Ei~RvLKPGG~Lvis~p~~~~~ 361 (667)
.....+|.++|.|+|.|.+++.|+.-+ ...++++++|+|||||+|-++.|.....
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 445678999999999999997777633 3479999999999999999999876553
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0036 Score=63.38 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=51.7
Q ss_pred eEEEeccccchhhhhhhhhcCCC---eEEEEeecCCCCCchhhH----hcccc---cccccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~---vwvmnv~p~~~~~~l~~~----~~RGl---ig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
..|||+|||+|.+++.|.+.-.+ |..+-+.| ..+..+ -+.|+ .=+..|..+.++. ...||+|+++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 37999999999999998863222 33332222 223222 22343 1123344444333 2579999985
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.... .+.-++-+.|+|||.+|+-
T Consensus 154 ~~~~------------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AAGP------------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCcc------------cccHHHHHhcCcCcEEEEE
Confidence 4432 2333566889999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.015 Score=64.11 Aligned_cols=96 Identities=8% Similarity=0.010 Sum_probs=70.9
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCC-CCCCCccEEEeccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCARCGV 328 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lp-fpd~sFDlV~~s~~ll 328 (667)
-+|||+-||+|..+..++.+......|+++|.++..++.++++ ++. +.+.+.|+..+- ...+.||+|..-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--C
Confidence 4899999999999999998721235699999999999877653 332 455556655432 1235799998753 2
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
..+..++..+.+.+++||.+.++.
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 233569999999999999999984
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.012 Score=62.62 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=68.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---ceEEeecccC-CC--CCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQ-LP--YPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~-Lp--fpd~sFDlV~~ 323 (667)
.++|||+=|=||.|+.+.+..| ..+|+.+|.|..+++.+++. ++. ..+...|+.. +. -..+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4799999999999999988876 45689999999999988765 432 3456555432 11 12468999998
Q ss_pred cccccc-----cccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 324 ARCGVD-----WDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 324 s~~ll~-----~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
---.+. ...+...++..+.++|+|||.|+++....
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 532121 12334568889999999999998877644
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0036 Score=68.26 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=60.4
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hcccccccccccccCCCCCCCccccccccCccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
.|||+|||.|.++.+|.+. .+-. .|+-+|.. .-+..+ -+.|+-+.++ +...++..+.+||+|-++-.|...
T Consensus 199 ~VLDlGCG~G~ls~~la~~-~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARH-SPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHh-CCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 5999999999999999863 2311 23333432 222211 1223322221 223344346899999998877532
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.. ...-....++-++-|.|+|||.++|-.+
T Consensus 275 ~~-~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQ-TSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cc-ccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 10 0112345788999999999999988543
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0052 Score=63.85 Aligned_cols=106 Identities=18% Similarity=0.220 Sum_probs=72.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCCCccccccccCccccccCCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 596 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~ 596 (667)
-.|-|||||-|-.|..- ..+|--|-+++++..-+.--|- + -|+. .+|-|++-+ |+|+--
T Consensus 182 ~vIaD~GCGEakiA~~~---~~kV~SfDL~a~~~~V~~cDm~---------~--vPl~--d~svDvaV~--CLSLMg--- 240 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASSE---RHKVHSFDLVAVNERVIACDMR---------N--VPLE--DESVDVAVF--CLSLMG--- 240 (325)
T ss_pred eEEEecccchhhhhhcc---ccceeeeeeecCCCceeecccc---------C--CcCc--cCcccEEEe--eHhhhc---
Confidence 36899999999888743 3689999999888763321110 0 2333 488998654 677643
Q ss_pred CCCCcchhheeccccccCCcEEEEEcCHHHHHHHHH---HHhhCCCeeEEee
Q 005959 597 HRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARA---LTTRLKWDARVIE 645 (667)
Q Consensus 597 ~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~---~~~~~~W~~~~~~ 645 (667)
-++-+.+.|.+|||+|||.++|-+-......++. -.+.|-.++...+
T Consensus 241 --tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 241 --TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred --ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 4667899999999999999999765554444443 3455677766654
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0046 Score=61.46 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=53.1
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCC-CCccccccccCccccccCC
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTY-PRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~ty-p~tyDl~H~~~~~~~~~~~ 595 (667)
+|||+|||.|.+..+|.+. ..+ ++.-+|.. ..+..+.++|+--+..|..+.++.+ +++||+|-++++|.+..
T Consensus 16 ~iLDiGcG~G~~~~~l~~~-~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDE-KQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR-- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhc-cCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc--
Confidence 7999999999999999752 222 22223333 4455555667533334443333333 37999999998886654
Q ss_pred CCCCCcchhheeccccccC
Q 005959 596 RHRCSTLDIFTEIDRILRP 614 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP 614 (667)
+...+|-||-|++++
T Consensus 90 ----d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 ----NPEEILDEMLRVGRH 104 (194)
T ss_pred ----CHHHHHHHHHHhCCe
Confidence 244566666555544
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.055 Score=55.87 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=87.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceE-EeecccCCC---CCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI-GSFASKQLP---YPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~-~~~da~~Lp---fpd~sFDlV~~s~~ll 328 (667)
..+.+||||+-||.||..++++|. ..|+++|..-.++..-.+....+.. ...++..+. +. +..|+++|--+++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFI 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFI 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehh
Confidence 468999999999999999999974 4699999999888776666554433 222333332 22 2678999875533
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCChh--------hhhhhHH-HHhhhhhhhhhhhccceEEe
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ--------AFLRNKE-NQKRWNFVRDFVENLCWELV 388 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~--------~~lr~~e-~~~~W~~ie~l~~~~~W~ll 388 (667)
. ...+|-.+..+|+|+|.++.-.-+.... +-+++++ ....-..+..++...+|...
T Consensus 156 S----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 156 S----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred h----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 2 4579999999999999988765433221 1122221 22334566677777777765
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.021 Score=58.43 Aligned_cols=95 Identities=23% Similarity=0.280 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+++|||.|.|.-+..|+=. .+...|+-+|....-+.+. ++-+++ +.+...-++.+.-....||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc--
Confidence 479999999999988887732 2445689999887655433 344666 77777777777543222999998754
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEE
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
.+...++.-+...+|+||.+++.
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhh
Confidence 34556778889999999988653
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.032 Score=56.57 Aligned_cols=100 Identities=15% Similarity=0.021 Sum_probs=65.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~sFDlV~~s 324 (667)
+..+|+|||+-+|.++..+++.......|+++|+.+--. -..+.+.++|+..-+ +....+|+|+|-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD 118 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSD 118 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------CCCceEEeeeccCccHHHHHHHHcCCCCcceEEec
Confidence 358999999999999999998744444588898864211 112555666654432 344457999975
Q ss_pred ccc---cccccCH-------HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 325 RCG---VDWDQKD-------GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 325 ~~l---l~~~~d~-------~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+- -++.-|. ..++.-...+|+|||.|++-++-.
T Consensus 119 ~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 119 MAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 321 1121121 245666778999999999988743
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.024 Score=60.20 Aligned_cols=137 Identities=19% Similarity=0.225 Sum_probs=85.5
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccccccccccccCCCCCCCccccccccCccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
+|+|||||+|--|.+|... .+. .+|+-+|-. .-|.++- .-|+.-++.--+.-|+..+.+||+|=++-=.-..
T Consensus 113 ~ilDlGTGSG~iai~la~~-~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKE-GPD--AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhh-CcC--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCC
Confidence 9999999999999999874 333 456666654 4444432 2454222222223355545589998765432111
Q ss_pred c------------------CCCCCCCcc---hhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCC-eeEEeeeccCC
Q 005959 593 S------------------GHRHRCSTL---DIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW-DARVIEIESNS 650 (667)
Q Consensus 593 ~------------------~~~~~c~~~---~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W-~~~~~~~~~~~ 650 (667)
. + ...++. .++-+..++|+|||++++.-....-++++++.....+ .......+..+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~--g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVG--GGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred cccccChhhhccCHHHHHcc--CccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecCCC
Confidence 1 1 112222 6788899999999999998777777888888888885 32222223344
Q ss_pred CccEEEEEc
Q 005959 651 DERLLICQK 659 (667)
Q Consensus 651 ~~~~li~~K 659 (667)
.+++.+.++
T Consensus 268 ~~rv~~~~~ 276 (280)
T COG2890 268 RDRVVLAKL 276 (280)
T ss_pred ceEEEEEEe
Confidence 566666654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.016 Score=60.87 Aligned_cols=138 Identities=12% Similarity=0.113 Sum_probs=73.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-cccc-------cccccccCCCCCCCcccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-GFVG-------VLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-Glig-------~~~~~c~~f~typ~tyDl~H~~ 586 (667)
-++|||+|||.|+++.+|... .|- +.|.-++-. .-+.++-+. ++.+ +..|--+-+...|.+||+|=++
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~-~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTY-LPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 468999999999999988752 231 223333332 333333332 1111 1123222234446789999765
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEE---EcCHHHHHHHHHHHhhCCCeeEEeeeccCCCccEEEEEc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII---RDTARLIESARALTTRLKWDARVIEIESNSDERLLICQK 659 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~---~d~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~li~~K 659 (667)
. |+.... ........++-++-++|+|||.+++ ..+...-+.++.+.+...-.+.+...+.. .+-++++.|
T Consensus 144 ~-~~~~~~-~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~-~N~v~~a~~ 216 (262)
T PRK04457 144 G-FDGEGI-IDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESH-GNVAVFAFK 216 (262)
T ss_pred C-CCCCCC-ccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCC-ccEEEEEEC
Confidence 2 332110 0112234788889999999999997 23333333344454444433344433222 246777766
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0058 Score=61.75 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=59.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCCCccccccccCccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
-.+|||+|||.|.|+.+|.+... .|+-+|.. +.+..+-++ |+-..++-....++.-+.+||+|.+..++.
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~-----~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA-----KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 35899999999999999986322 24444443 444444332 221112212222444457899999988886
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
++. .-.+..++-++-|++++++.+.+...
T Consensus 139 ~~~----~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 139 HYP----QEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred cCC----HHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 653 23455677788887766665554433
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.021 Score=54.09 Aligned_cols=97 Identities=18% Similarity=0.092 Sum_probs=60.1
Q ss_pred CCCEEEEeCCCCchHHHHHhh-----cCCceeEEEEecCCHHHHHHHHHcCC--C------ceEEeecccCCCCCCCCcc
Q 005959 253 GVRTILDIGCGYGSFGAHLFS-----KELLTMCIANYEASGSQVQLTLERGL--P------AMIGSFASKQLPYPSLSFD 319 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~-----~g~~~~sV~gvD~S~~ml~~A~ergl--~------~~~~~~da~~Lpfpd~sFD 319 (667)
...+|+|+|||.|.++..|+. . ....|+++|.++..++.+.++.. . ..+...+....+ .....+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 457999999999999999988 3 45679999999998877765421 1 112222211111 134566
Q ss_pred EEEecccccccccCH-HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 320 MLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 320 lV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+++.. |-..+. ..+|+-+.+ |+-.+++..|.=.
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcCCcc
Confidence 66654 334444 345665555 6666666666543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0016 Score=66.47 Aligned_cols=137 Identities=19% Similarity=0.195 Sum_probs=92.2
Q ss_pred CCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccc-cccccccCCC--CCCCccccccccCc
Q 005959 513 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVG-VLHDWCEAFP--TYPRTYDLVHAEGL 588 (667)
Q Consensus 513 ~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig-~~~~~c~~f~--typ~tyDl~H~~~~ 588 (667)
.+.+|.+||+|||+|=+|-+|.+. +=-+.=+|-+ |-|-.+.|+|+-- .+|-=-..|. .=+.-||||-+..+
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~-----a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDM-----ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred CCccceeeecccCcCcccHhHHHH-----HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 455999999999999999999872 1123344445 8899999999721 1111111244 34688999999999
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcCH----------------HHHHHHHHHHhhCCCeeEEeee-----c
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEI-----E 647 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~-----~ 647 (667)
|.-. -.++.++.=..+.|.|||.|+++-.. .--..|+.+.++---+++.++. +
T Consensus 198 l~Yl------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 198 LPYL------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred HHhh------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 9855 36778999999999999999997221 1124566677776676665432 1
Q ss_pred cCC--CccEEEEEcc
Q 005959 648 SNS--DERLLICQKP 660 (667)
Q Consensus 648 ~~~--~~~~li~~K~ 660 (667)
.+. ...+.|++|+
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 122 4566777764
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0052 Score=62.08 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=62.4
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cccccccccccCCCCCCCccccccccCccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Glig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
-..|||+|||.|-+..+|.+. .+- .+++-+|-. ..+..+-++ ++-=...|..++|+ +++||+|-+.+++.+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC
Confidence 356999999999999999762 111 234555544 555555443 22111234444554 3899999999999876
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
. .-.+..++-||-|++ +++++|.
T Consensus 119 ~----p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 119 N----PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred C----HHHHHHHHHHHHhhc--CcEEEEE
Confidence 4 235567889999998 5788874
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0052 Score=61.55 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=87.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCC-CccccccccCccccccCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYP-RTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ-~tyDl~H~~~~~~~~~~~ 595 (667)
-.|||+|||.|.+-++|.+. +.|=..-|=- .+..+.-..+||+-=+-+|.-+-++.|| .+||.|=.+.-+....
T Consensus 15 srVLDLGCGdG~LL~~L~~~-k~v~g~GvEi--d~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~-- 89 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE-KQVDGYGVEI--DPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR-- 89 (193)
T ss_pred CEEEecCCCchHHHHHHHHh-cCCeEEEEec--CHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh--
Confidence 46999999999999999984 6776655421 2356778899999888889988898888 8999999988877654
Q ss_pred CCCCCcchhheeccccccCCcEEEEE------------------------------cCH----HHHHHHHHHHhhCCCee
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIR------------------------------DTA----RLIESARALTTRLKWDA 641 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~------------------------------d~~----~~~~~~~~~~~~~~W~~ 641 (667)
.-..+|-|| ||=|.-.|++ |++ -++...+.+.+.+..++
T Consensus 90 ----~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I 162 (193)
T PF07021_consen 90 ----RPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRI 162 (193)
T ss_pred ----HHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEE
Confidence 234688888 5557788875 333 33777888888887765
Q ss_pred EEe
Q 005959 642 RVI 644 (667)
Q Consensus 642 ~~~ 644 (667)
.-.
T Consensus 163 ~~~ 165 (193)
T PF07021_consen 163 EER 165 (193)
T ss_pred EEE
Confidence 543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.016 Score=61.52 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=69.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cc-cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||+|.++.+|... .+- .+|+-+|-. ..+.++-+ .|+ |- +..|+-+.++ +.+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~-~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYA-FPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECC
Confidence 47999999999999999863 221 134445543 44443332 354 21 2344445443 25899999863
Q ss_pred cccccc------------------CCCCCCC-cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCee
Q 005959 588 LLSLES------------------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDA 641 (667)
Q Consensus 588 ~~~~~~------------------~~~~~c~-~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~ 641 (667)
=+.... ++.+... ...++-++-+.|+|||++++.-.... ++++++.....|..
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTW 269 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCce
Confidence 221100 0000001 23678888999999999998644433 67787777655443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.056 Score=55.43 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHH----HHHHHHcCCCceEEee
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ----VQLTLERGLPAMIGSF 306 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~m----l~~A~ergl~~~~~~~ 306 (667)
..+...++..+..+.. .+.-.++.+||-+|+.+|....++++---....|.+++.|+.. ++.|++|. ++.-...
T Consensus 52 ~P~RSKLaAai~~Gl~-~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~ 129 (229)
T PF01269_consen 52 NPFRSKLAAAILKGLE-NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILE 129 (229)
T ss_dssp -TTT-HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES
T ss_pred CchhhHHHHHHHcCcc-ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeec
Confidence 4444455555433222 1223355899999999999999988753234468999999854 56666664 3332333
Q ss_pred cccCCCC----CCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 307 ASKQLPY----PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 307 da~~Lpf----pd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+. .|. --+.+|+|++--+ ..+..+.++.+....||+||.++++.-
T Consensus 130 DAr-~P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 130 DAR-HPEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp -TT-SGGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC-ChHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 443 331 1237999998732 223335688889999999999999854
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.075 Score=57.90 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=80.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+.+|||+=||.|.|+..++..+.. .|.++|+++..++..++. ++. +...++|+...+..-+.||-|+++..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 479999999999999999998744 399999999999877654 333 34577888887766689999998853
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.....++....+.+++||.+.+....+..
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 23456888889999999999999887654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.069 Score=63.70 Aligned_cols=126 Identities=15% Similarity=0.168 Sum_probs=72.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc----c-cccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV----G-VLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli----g-~~~~~c~~f~typ~tyDl~H~~ 586 (667)
+.|||++||+|+|+-++...+-. .|+-+|.. .-+..+-+ -|+- = +-.|..+.+....++||+|=++
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~----~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK----STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 58999999999999999863211 34555544 33332222 2321 0 1223222222235789999876
Q ss_pred Cc-cccccCC----CCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeee
Q 005959 587 GL-LSLESGH----RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEI 646 (667)
Q Consensus 587 ~~-~~~~~~~----~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~ 646 (667)
-= |..-... ...-....++-..=|+|+|||.+++......+....+.+..-.+++.....
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEec
Confidence 33 2211000 000123356667788999999999976665555556677777888877753
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0085 Score=60.75 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=48.3
Q ss_pred eEEEeccccchhhhhhhhhcC---CCeEEEEeecCCCCCchhhHhc----ccccccccccccCCCCCC--CccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~~~l~~~~~----RGlig~~~~~c~~f~typ--~tyDl~H~~~ 587 (667)
..|||+|||+|.+++.|.+.- ..|..+-+-| ..+..+-+ -|+-.+---.+..+..++ ..||.|++..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 479999999999998876520 1233333322 22222221 132111111112222222 6799999855
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~~------------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP------------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc------------cchHHHHHhhCCCcEEEEE
Confidence 432 2333555689999999884
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.063 Score=54.68 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=77.6
Q ss_pred hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC----CceEEe
Q 005959 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PAMIGS 305 (667)
Q Consensus 230 ~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl----~~~~~~ 305 (667)
...+++..++.+.. ++++||.||-|-|.....+.++.. ..-+-++.++..++..+..|- ++.+..
T Consensus 87 EtpiMha~A~ai~t---------kggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw~ek~nViil~ 155 (271)
T KOG1709|consen 87 ETPIMHALAEAIST---------KGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGWREKENVIILE 155 (271)
T ss_pred hhHHHHHHHHHHhh---------CCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcccccccceEEEe
Confidence 35566666666652 347999999999999888877642 233568999999988877653 222222
Q ss_pred eccc-CC-CCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 306 FASK-QL-PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 306 ~da~-~L-pfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+-=+ .+ .++|+.||-|+---- -.+-++...+.+.+.|+|||+|.|-+.-
T Consensus 156 g~WeDvl~~L~d~~FDGI~yDTy-~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 156 GRWEDVLNTLPDKHFDGIYYDTY-SELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cchHhhhccccccCcceeEeech-hhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 2111 12 267889999986521 2334566678889999999999987754
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.074 Score=56.40 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=60.0
Q ss_pred CCCEEEEeCCCCchHHHHHhh-cCCceeEEEEecCCHHHHHHHHHc-------CCCceEEeecccCCCCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~-~g~~~~sV~gvD~S~~ml~~A~er-------gl~~~~~~~da~~Lpfpd~sFDlV~~s 324 (667)
.+.+|+=||||+=-+|..+.. +......|+++|.+++.++.+++- +....+..+|....+..-..||+|+.+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 346999999998766655543 323456789999999999887531 334567777877666555689999987
Q ss_pred ccccccc-cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.. .... .+-.++|..+.+.++||..+++...
T Consensus 200 al-Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 200 AL-VGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hh-cccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 43 3333 2446799999999999999998743
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0071 Score=64.07 Aligned_cols=95 Identities=21% Similarity=0.334 Sum_probs=70.6
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cchh-hHhccccc----ccccccccCCCCCCCccccccccCcccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP-MILDRGFV----GVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~-~~~~RGli----g~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
+|||+|||-|+++-++.+ ..+|=|..|.-..+. ...+ -|-++|+- -.++||...=.. ||=|=+-+.|.+
T Consensus 75 ~lLDiGCGWG~l~~~aA~-~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~----fDrIvSvgmfEh 149 (283)
T COG2230 75 TLLDIGCGWGGLAIYAAE-EYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP----FDRIVSVGMFEH 149 (283)
T ss_pred EEEEeCCChhHHHHHHHH-HcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc----cceeeehhhHHH
Confidence 799999999999999987 357766666554443 2222 36779986 447777665443 888888888877
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.. .-+..+.+-=+.++|+|||-+++.
T Consensus 150 vg----~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 150 VG----KENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred hC----cccHHHHHHHHHhhcCCCceEEEE
Confidence 63 355678888999999999999974
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0069 Score=64.77 Aligned_cols=115 Identities=18% Similarity=0.224 Sum_probs=62.6
Q ss_pred eEEEeccccchh--hhhhhhhcCCCeEEEEeecCCCCCchhhHhccccccccc-ccccCCCCCCCccccccccCcccccc
Q 005959 517 RNVLDMNAHFGG--FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 517 R~vlDm~~~~g~--faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~-~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
..|||+|||+|- .||+++-. +.|...-+=|..-.+...-+..-|+-.-+. ...+.++. ..||+|=|+=+.....
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~vL~ 239 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADVLL 239 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHHHH
T ss_pred CEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHHHH
Confidence 499999999995 56666653 445544443332222222222334322110 02233443 7899999865555444
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEEcCH-HHHHHHHHHHhhCCCeeEEe
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVI 644 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~ 644 (667)
.++=++.+.|+|||++|++.-. +..++|.+..+. -|++...
T Consensus 240 ---------~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 240 ---------ELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp ---------HHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEE
T ss_pred ---------HHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEE
Confidence 4666789999999999997321 123344444455 6665444
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.017 Score=62.00 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=67.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cc-cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++.+|... .+. .+|+-+|-. ..+..+-+ .|+ |- +..|+.+.++ +.+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~-~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA-FPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHH-CCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECC
Confidence 47999999999999999863 232 345555654 44444333 343 21 3345555554 36899999863
Q ss_pred cccccc------------------CCCCCC-CcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhC
Q 005959 588 LLSLES------------------GHRHRC-STLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRL 637 (667)
Q Consensus 588 ~~~~~~------------------~~~~~c-~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~ 637 (667)
-+.... ++.+.. ....++-+.-+.|+|||++++.-..+ .+++.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 221110 000000 11367888899999999999853333 34566665543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.068 Score=60.16 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=68.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCC---CCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfp---d~sFDlV~~s~ 325 (667)
..++||+=||.|.|+..|+++ ...|+|+|+++++++.|++. ++ ++.|..+++++..-. ...||+|+..-
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred CCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 478999999999999999976 46799999999999877654 44 467777887776533 35789998652
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
-.-- -...+++.+. .++|-.++++|..+
T Consensus 371 PR~G---~~~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 371 PRAG---ADREVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred CCCC---CCHHHHHHHH-hcCCCcEEEEeCCH
Confidence 2110 1124555544 45777888888653
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.0084 Score=60.63 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=61.7
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----ccccccccccCCCCCCCccccccccCccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----lig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
-.+|||+|||.|.|+.+|.+. .. .|+=+|-. +.+..+.+|- +..-..=.+..+...|.+||+|=+..++.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 468999999999999999863 21 34444543 4555554442 10001111122222347899998877765
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.+. ...+..++-++.|+++|++++.+...
T Consensus 131 ~~~----~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 131 HYP----ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred hCC----HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 543 23456788999999999888887543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.11 Score=53.35 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCC--ceEEeeccc-CCC-----CCCCCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMIGSFASK-QLP-----YPSLSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~--~~~~~~da~-~Lp-----fpd~sFDlV 321 (667)
+++.||||.=||..+..++..-.....|+++|+++...+.+.+ .|+. +.+..+.+. .|+ .+.++||++
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 4899999998888877777664456779999999988776643 2332 233333321 111 356899999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+.- ++.++....+.++.++||+||.+++.-
T Consensus 154 FvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 853 455556689999999999999999864
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.0045 Score=55.23 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=39.1
Q ss_pred EEeCCCCchHHHHHhhcCCce--eEEEEecCCH---HHHHHHHHcCC--CceEEeecccCC--CCCCCCccEEEeccccc
Q 005959 258 LDIGCGYGSFGAHLFSKELLT--MCIANYEASG---SQVQLTLERGL--PAMIGSFASKQL--PYPSLSFDMLHCARCGV 328 (667)
Q Consensus 258 LDIGCGtG~~t~~La~~g~~~--~sV~gvD~S~---~ml~~A~ergl--~~~~~~~da~~L--pfpd~sFDlV~~s~~ll 328 (667)
||||+..|..+..+++.--.. ..++++|..+ ...+..++.+. .+.+..++.... .+++++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689999999998888652111 3688999988 33344443333 345555554321 133578999997743
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
|-.+.....+..+.+.|+|||++++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 323444578899999999999999865
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.087 Score=57.85 Aligned_cols=108 Identities=18% Similarity=0.250 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHHH----HcCCCc-eEEeecccCCC--CC-CCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTL----ERGLPA-MIGSFASKQLP--YP-SLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~-~~sV~gvD~S~~ml~~A~----ergl~~-~~~~~da~~Lp--fp-d~sFDlV~~ 323 (667)
++.+|||+-++.|.=|.++++..-. ...|+++|.++.-++... +-|+.. .+...|...++ .+ .+.||.|..
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl 235 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL 235 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence 4589999999999999999887422 234699999987665443 336553 45555655554 22 235999985
Q ss_pred ----ccc-ccc--------cccC--------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 ----ARC-GVD--------WDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 ----s~~-ll~--------~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+.. .+. +... ...+|....++|||||.|+.++-....
T Consensus 236 DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 236 DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 211 121 1111 125789999999999999999876543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.18 Score=50.46 Aligned_cols=102 Identities=21% Similarity=0.204 Sum_probs=68.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCceEEeecccCC-CCCCC--CccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL-PYPSL--SFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~L-pfpd~--sFDlV~~ 323 (667)
.+.++||+=+|+|.++...+.+|.. .++.+|.+...++..+++ + .+..+...|+... +.... +||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 3589999999999999999999854 578899999988777654 3 2344454554422 22222 4999998
Q ss_pred cccccccc-cCHHHHHH--HHHhcccCCeEEEEEeCC
Q 005959 324 ARCGVDWD-QKDGILLL--EVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 324 s~~ll~~~-~d~~~~L~--Ei~RvLKPGG~Lvis~p~ 357 (667)
--- ++.. -+....+. +-..+|+|+|.+++....
T Consensus 121 DPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 121 DPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 754 3321 11122233 356789999999997553
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.0019 Score=57.12 Aligned_cols=93 Identities=26% Similarity=0.265 Sum_probs=56.7
Q ss_pred EEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----c-cc-cccccccCCCCCCCccccccccCc-cc
Q 005959 519 VLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VG-VLHDWCEAFPTYPRTYDLVHAEGL-LS 590 (667)
Q Consensus 519 vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----l-ig-~~~~~c~~f~typ~tyDl~H~~~~-~~ 590 (667)
|||+|||.|.+..+|.+.-+.--...+.-.|-. ..|..+.++. + += +..|. +.++..-.+||+|=|+++ |.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccC
Confidence 799999999999999863100011455555654 5666555554 2 11 12222 223433469999999777 55
Q ss_pred cccCCCCCCCcchhheeccccccCCc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEG 616 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G 616 (667)
+. ..-.+..+|=++=|+|||||
T Consensus 80 ~~----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS----SHHHHHHHHHHHHHTEEEEE
T ss_pred CC----CHHHHHHHHHHHHHHhCCCC
Confidence 53 44566789999999999998
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.0082 Score=58.61 Aligned_cols=114 Identities=20% Similarity=0.199 Sum_probs=66.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cccccccccCCCCCCCccccccccC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
-.+|||+|||+|-.+.+|... .+-.. |+-+|-. .-+..+.+ -|+ --+.+|+.++++ +..||+|=++-
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~-~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NP 106 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKR-GPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNP 106 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHT-STCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE--
T ss_pred CCeEEEecCChHHHHHHHHHh-CCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEcc
Confidence 456999999999999999873 34333 3333433 33333322 222 234567777766 48999998865
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEE--EEcCHHHHHHHHHHHh
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVI--IRDTARLIESARALTT 635 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i--~~d~~~~~~~~~~~~~ 635 (667)
=|..-. ......+..++-+-=++|+|||.++ ++.....-..++++..
T Consensus 107 P~~~~~-~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 107 PFHAGG-DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp -SBTTS-HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred chhccc-ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 432211 0011335578889999999999774 4544433333444443
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.012 Score=57.59 Aligned_cols=142 Identities=22% Similarity=0.347 Sum_probs=68.6
Q ss_pred CCCceeEEEeccccchhhhhhhhhcC---CCeEEEEeecCCCCCchhhHhccccc---ccccccccCCCCCCCccccccc
Q 005959 512 PYNMVRNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFV---GVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 512 ~~~~~R~vlDm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~~~l~~~~~RGli---g~~~~~c~~f~typ~tyDl~H~ 585 (667)
+.+.-.+|||+||+-|||..++++.. ..|+-+-+.|.+....+..+ +|=+ .....-.+.++.=...+|+|-|
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceecc
Confidence 34568999999999999999999854 33556666666433222222 2311 1111222333211157999999
Q ss_pred cCccccccC--CCCCCCcchhhee---ccccccCCcEEEEE-----cCHHHHHHHHHHHhhCCCeeEEeeecc---CCCc
Q 005959 586 EGLLSLESG--HRHRCSTLDIFTE---IDRILRPEGWVIIR-----DTARLIESARALTTRLKWDARVIEIES---NSDE 652 (667)
Q Consensus 586 ~~~~~~~~~--~~~~c~~~~~l~E---~dRiLRP~G~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~~~---~~~~ 652 (667)
+..+..-.. ..+--.+..++-+ +-..|+|||.+|+. +..+++..++..=+. +.+.+... .+.|
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~----v~~~Kp~~sr~~s~E 173 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSK----VKIVKPPSSRSESSE 173 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHH----EEEEE-TTSBTTCBE
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeE----EEEEECcCCCCCccE
Confidence 885432210 0000011112222 23559999988874 223444544442222 34443332 2457
Q ss_pred cEEEEEc
Q 005959 653 RLLICQK 659 (667)
Q Consensus 653 ~~li~~K 659 (667)
..+||.+
T Consensus 174 ~Ylv~~~ 180 (181)
T PF01728_consen 174 EYLVCRG 180 (181)
T ss_dssp EEEESEE
T ss_pred EEEEEcC
Confidence 7777753
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.047 Score=54.35 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=56.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccc--ccccc-ccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLH-DWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGl--ig~~~-~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|+|+|||+|.++..+....... .|+-+|-. ..+..+- +.|+ +=+++ |-.+.++...-.+|.++..
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~---~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~-- 116 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKG---RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE-- 116 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE--
Confidence 369999999999988776421111 22223322 2222221 1233 11111 1111111111124544431
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCC
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLK 638 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~ 638 (667)
....+..++-++-|+|+|||++++... .+.+.++.+..+.+.
T Consensus 117 --------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 117 --------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred --------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 113456889999999999999998753 344555556565553
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.029 Score=56.43 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=71.3
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC--CchhhHhcccccccccccccCCCC-----CCCccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT--NHLPMILDRGFVGVLHDWCEAFPT-----YPRTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~--~~l~~~~~RGlig~~~~~c~~f~t-----yp~tyDl~H~~~~~~ 590 (667)
.+||+|||.|.|..+|....-+.-.+-|=+.... ..+.-+..+|+-.+.--.|.+.-. -|.+.|.||-..- +
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 8999999999999999865333323222222221 344556667763333222333220 1478888776221 2
Q ss_pred cccCCC--CCCCcc-hhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhC--CCeeE
Q 005959 591 LESGHR--HRCSTL-DIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL--KWDAR 642 (667)
Q Consensus 591 ~~~~~~--~~c~~~-~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~--~W~~~ 642 (667)
.|-..+ +|.-+. ..|-++-|+|+|||.+.++ |..+..+.+.+.+... .++..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 233211 244443 7788999999999999985 6667777777776664 55544
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.23 Score=52.28 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=78.5
Q ss_pred HHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC--CceEEeec
Q 005959 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL--PAMIGSFA 307 (667)
Q Consensus 234 ~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl--~~~~~~~d 307 (667)
+..+..+|...+| .+|||-|.|.|+++..+++.-.++..+...|+++.-.+.|++ .++ ++.+..-|
T Consensus 94 ia~I~~~L~i~PG--------svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRPG--------SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCCC--------CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 3456677777776 899999999999999999886567788999998877666654 343 34455556
Q ss_pred ccCCCCC--CCCccEEEecccccccccCHHHHHHHHHhcccCCe-EEEEEeCCC
Q 005959 308 SKQLPYP--SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTSPLT 358 (667)
Q Consensus 308 a~~Lpfp--d~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG-~Lvis~p~~ 358 (667)
+....|. +..+|+|+.-. +.+-.++-.+..+||.+| +|+--.|+.
T Consensus 166 Vc~~GF~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred cccCCccccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEeccHHH
Confidence 6655554 57899998652 344456777777999876 555555554
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.12 Score=55.38 Aligned_cols=135 Identities=16% Similarity=0.131 Sum_probs=85.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH---HHHH----HcCC---------------------CceE-
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV---QLTL----ERGL---------------------PAMI- 303 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml---~~A~----ergl---------------------~~~~- 303 (667)
..-+||-=|||.|.++..|+..|+. +-|.+.|--|+ .++. ..+. ++.+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~---~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK---CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc---ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 4467999999999999999988754 56778887775 2222 2110 0000
Q ss_pred ----------------EeecccC---CCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhh
Q 005959 304 ----------------GSFASKQ---LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 364 (667)
Q Consensus 304 ----------------~~~da~~---Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~l 364 (667)
..+|..+ .+-..++||+|+..+- +.-..+.-..+..|..+|||||+++=..|...+...-
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF-IDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF-IDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE-eechHHHHHHHHHHHHhccCCcEEEeccceeeeccCC
Confidence 0011100 0111246999987754 5555566689999999999999999777765442111
Q ss_pred hh----HHHHhhhhhhhhhhhccceEEeecc
Q 005959 365 RN----KENQKRWNFVRDFVENLCWELVSQQ 391 (667)
Q Consensus 365 r~----~e~~~~W~~ie~l~~~~~W~ll~~~ 391 (667)
.. ..-....+.+..+++..+|+.+.+.
T Consensus 306 ~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 306 HGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 11 1112345677788889999988765
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.028 Score=60.06 Aligned_cols=97 Identities=25% Similarity=0.360 Sum_probs=65.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhccccccccc-ccc-----cCCCCCCCccccccccCcc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWC-----EAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~-~~c-----~~f~typ~tyDl~H~~~~~ 589 (667)
=|.|||+|||-|-|.=.|+.. .+-.|+-+=|..-. .+|+-+-+-++|.-. -.. |..|. ..+||+|-|.|++
T Consensus 116 gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf-~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLF-YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHH-HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 479999999999999888874 45556666554433 333333333333110 011 33555 6899999999998
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
-+ |-+-.+.|.++-..|||||-+|+.
T Consensus 193 YH------rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YH------RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hc------cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 74 334447888999999999999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.014 Score=62.30 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=62.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc------c--ccccccccccCCCCCCCcc----c-c
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------G--FVGVLHDWCEAFPTYPRTY----D-L 582 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R------G--lig~~~~~c~~f~typ~ty----D-l 582 (667)
.+|||+|||.|.++..|++.-.. .-+|++.|-. .-|..+.++ + +.++..|.++.++. |..+ + +
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~--~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~-~~~~~~~~~~~ 141 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ--PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL-PPEPAAGRRLG 141 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc--CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh-hcccccCCeEE
Confidence 46999999999999999863111 2468888877 666666554 2 23556676665432 2223 2 3
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+.+...|.+.. +-....+|-++=+.|+|||.|++.
T Consensus 142 ~~~gs~~~~~~----~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFT----PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCC----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 33333333332 223446899999999999999973
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.025 Score=56.98 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=48.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--cccc-cccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig~~-~~~c~~f~typ~tyDl~H~~~~ 588 (667)
..|||+|||+|.+++.|..... .|.-+|-. +.+..+-++ |+ +-+. .|.-+.++. ..+||+|.++..
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~-----~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~ 153 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR-----RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA-YAPFDRILVTAA 153 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC-----EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc-CCCcCEEEEccC
Confidence 4799999999999987765321 23333332 223322221 33 1111 121122221 168999998654
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+... .-++-+.|+|||.+++.
T Consensus 154 ~~~~------------~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 154 APEI------------PRALLEQLKEGGILVAP 174 (212)
T ss_pred chhh------------hHHHHHhcCCCcEEEEE
Confidence 4322 23455899999999985
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.11 Score=57.62 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCCCCccEEEecccccccccCHH--------------------------------------HHHHHHHhcccCCeEEEEE
Q 005959 313 YPSLSFDMLHCARCGVDWDQKDG--------------------------------------ILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 313 fpd~sFDlV~~s~~ll~~~~d~~--------------------------------------~~L~Ei~RvLKPGG~Lvis 354 (667)
||+++.+++|++.+ +||..... .+|+-=.+-|.|||.++++
T Consensus 158 fP~~Slh~~~Ss~s-lHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 158 FPARSIDVFHSAFS-LHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred cCCCceEEEEeecc-ceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 89999999999988 88874211 1333344568899999998
Q ss_pred eCCCC
Q 005959 355 SPLTN 359 (667)
Q Consensus 355 ~p~~~ 359 (667)
..+..
T Consensus 237 ~~Gr~ 241 (386)
T PLN02668 237 CLGRT 241 (386)
T ss_pred EecCC
Confidence 76653
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.023 Score=57.91 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=56.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhccccccc--------------ccccccCCCCCC----C
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGV--------------LHDWCEAFPTYP----R 578 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~--------------~~~~c~~f~typ----~ 578 (667)
..|||+|||.|-.|.+|.+.+..|..+=++|+--. .+.-+.|+-.. +.-+|--|-.++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVE---QFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHH---HHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 48999999999999999997777877777665221 01112222110 011222221111 2
Q ss_pred ccccccccCccccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 579 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 579 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
+||+|-...+|.+.. ...-..++-.|-|+|||||++++
T Consensus 113 ~fD~i~D~~~~~~l~----~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIALP----EEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccCC----HHHHHHHHHHHHHHcCCCCeEEE
Confidence 466655545554332 12223578889999999997544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.18 Score=53.22 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=58.2
Q ss_pred CCCEEEEeCCCC--chHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCC--ceEEeecccCCC----------C--
Q 005959 253 GVRTILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLP--AMIGSFASKQLP----------Y-- 313 (667)
Q Consensus 253 ~~~~VLDIGCGt--G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~--~~~~~~da~~Lp----------f-- 313 (667)
+.+..||||||- -..+-..+++-.+...|+-+|+.+-.+..++.. ... ..++.+|..+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 468999999994 334555666544667899999999888755432 233 456777654421 0
Q ss_pred CCCCccEEEeccccccccc---CHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 314 PSLSFDMLHCARCGVDWDQ---KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 314 pd~sFDlV~~s~~ll~~~~---d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.++..=+++ ..+ +|+.+ ++..++..+...|.||.+|+++.....
T Consensus 148 ~~rPVavll-~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLL-VAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEE-CT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCeeeee-eee-eccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 122333333 334 66653 456899999999999999999987654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.029 Score=58.01 Aligned_cols=95 Identities=16% Similarity=0.257 Sum_probs=67.2
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-ccccccccc----CCCCCCCccccccccCcccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCE----AFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig~~~~~c~----~f~typ~tyDl~H~~~~~~~ 591 (667)
.|||+|||-|.++-.|...+ -+|.-.|.. ..+.++-.+.+ -|+.-+|.. .+-.=--+||.|=|..+..+
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G-----a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG-----ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred eEEEecCCccHhhHHHHHCC-----CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 48999999999999999855 477788876 77777664443 223323321 11110047999999888887
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.. +...++.+..+.+||||-++++.-
T Consensus 137 v~------dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 137 VP------DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred cC------CHHHHHHHHHHHcCCCcEEEEecc
Confidence 65 344689999999999999999754
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.096 Score=52.37 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=68.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+.|+|+|+|.++...++. .-.|.+++.++.....|.++ | .+..++.+|+....| ...|+|+|...--.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 67999999999998777765 44689999999888888765 1 345677888888777 46899999753112
Q ss_pred cccC-HHHHHHHHHhcccCCeEEEE
Q 005959 330 WDQK-DGILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 330 ~~~d-~~~~L~Ei~RvLKPGG~Lvi 353 (667)
..+. .-..+..+...||-++.++=
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCcccc
Confidence 2222 23467777778888888763
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.31 Score=49.58 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=71.4
Q ss_pred EEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCC-CccEEEecccccc
Q 005959 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSL-SFDMLHCARCGVD 329 (667)
Q Consensus 257 VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~-sFDlV~~s~~ll~ 329 (667)
|.||||--|.+..+|++++. ...+++.|+++.-++.|++. ++. +.+..+|-.. +++.+ ..|.|+.+.+.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 68999999999999999974 56789999999999888754 433 3344444221 23333 3788887654111
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeec
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~ 390 (667)
-....|.+....++..-.|++.-.. ....++.+....+|.++.+
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~~--------------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPNT--------------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEESS---------------HHHHHHHHHHTTEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCCC--------------ChHHHHHHHHHCCCEEEEe
Confidence 1245777777777776777775331 2345677888888888755
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.11 Score=56.91 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=38.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ 310 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~ 310 (667)
.+|||+=||.|.++..|++. ...|+|+|.++++++.|++. ++ ++.+..+++++
T Consensus 198 ~~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 37999999999999999987 35699999999999887643 44 45666555443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.069 Score=49.83 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=34.4
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er 297 (667)
++||||||.|.++..+++.+ ....++++|+++.+.+.+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHH
Confidence 48999999999999998875 334799999999998877653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.071 Score=56.66 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCCce-EEeecccCC-C-CCCCCccEEEe--
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLPAM-IGSFASKQL-P-YPSLSFDMLHC-- 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~~~-~~~~da~~L-p-fpd~sFDlV~~-- 323 (667)
+..+|||+.++.|.=+.++++.-.....+++.|.+..-+...+ +-|+... ....|.... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 4578999999999999999887444567999999988775543 3355443 333455444 1 23346999985
Q ss_pred --ccc-ccccccC----------------HHHHHHHHHhcc----cCCeEEEEEeCC
Q 005959 324 --ARC-GVDWDQK----------------DGILLLEVDRVL----KPGGYFVWTSPL 357 (667)
Q Consensus 324 --s~~-ll~~~~d----------------~~~~L~Ei~RvL----KPGG~Lvis~p~ 357 (667)
+.. .+.-.++ ..++|....+.+ ||||+++.++-.
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 211 1111111 125788999999 999999999874
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.2 Score=50.43 Aligned_cols=136 Identities=16% Similarity=0.089 Sum_probs=71.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH----------HHHHHHHcCC-CceEEeecccCCCCCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----------QVQLTLERGL-PAMIGSFASKQLPYPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~----------ml~~A~ergl-~~~~~~~da~~Lpfpd~sFDlV 321 (667)
+..+|+|+=.|.|.+|+.|+..--....|+++-..+. +-..+++... +..........++ +.+..|++
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~ 126 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLV 126 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCccccc
Confidence 3489999999999999999876222223444322221 1222222211 1111111222233 33445555
Q ss_pred Eecccc-------cccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHH--HhhhhhhhhhhhccceEEeec
Q 005959 322 HCARCG-------VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN--QKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 322 ~~s~~l-------l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~--~~~W~~ie~l~~~~~W~ll~~ 390 (667)
+..... +| .....++..++++.|||||.+++.++....-..+++... +-.-..+....+.-+|.+..+
T Consensus 127 ~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 127 PTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred ccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 543221 22 233467999999999999999999876544222222211 111223344455666666544
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.012 Score=52.90 Aligned_cols=97 Identities=25% Similarity=0.348 Sum_probs=56.4
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cc-------ccccccccccCCCCCCCccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RG-------FVGVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RG-------lig~~~~~c~~f~typ~tyDl~H~ 585 (667)
.|||++||.|.|..++++.. .-+++=.|-. ..+.++-. .| +.|=+.+..+.++. ..||+|=+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~ 76 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG----AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVT 76 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC----TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE
T ss_pred EEEEcCcchHHHHHHHHHHC----CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEE
Confidence 69999999999999998742 2233333322 11111111 11 13333344445555 88999999
Q ss_pred cCccccccCCC--CCCCcchhheeccccccCCcEEEE
Q 005959 586 EGLLSLESGHR--HRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 586 ~~~~~~~~~~~--~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
+--|....... .+-....++-++.|+|||||.+++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 88886532100 112344778899999999999886
|
... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.15 Score=51.28 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=65.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..++|||+|.|.|..+..-+..|.. .++..|+.+..++.. +.+++.+.+...+ +-..+..||+|+.+.+++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d---~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHAD---LIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeecc---ccCCCcceeEEEeeceec
Confidence 3589999999999998888887643 467778776655443 3345455554333 223677899999998855
Q ss_pred ccccCHHHHHHHHHhcccC-CeEEEEEeCCCCh
Q 005959 329 DWDQKDGILLLEVDRVLKP-GGYFVWTSPLTNP 360 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKP-GG~Lvis~p~~~~ 360 (667)
.. +...+++. +.+.|+. |-.+++-+|.-.+
T Consensus 154 ~~-~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 NH-TEADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred Cc-hHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 54 33346666 5555555 5555555665443
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.13 Score=53.61 Aligned_cols=126 Identities=13% Similarity=0.211 Sum_probs=82.2
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEe--ecCCCC-CchhhHh----ccc--ccccccccccCCCCCCCcccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNV--VPTIGT-NHLPMIL----DRG--FVGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv--~p~~~~-~~l~~~~----~RG--lig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
...|||+|||.|.-+=+|.+...++=+.-| -+.... ++-.+.+ +|- +=+=+..|+.++.. .+||+|=|+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEEeC
Confidence 889999999999877777652122322221 111111 1111111 222 12344567777776 579999998
Q ss_pred CccccccCC------------CCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEE
Q 005959 587 GLLSLESGH------------RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARV 643 (667)
Q Consensus 587 ~~~~~~~~~------------~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~ 643 (667)
-=|-.-... ...|.+++++-=--++|+|||++.+=-.++.+.++-.++++++|+...
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 665332210 133666677777789999999999999999999999999999998654
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.071 Score=52.31 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=44.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC--CCCCC-ccEEEec
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLS-FDMLHCA 324 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp--fpd~s-FDlV~~s 324 (667)
.+|+|+-||.|..+..+++.. ..|+++|.++..++.|+.. |+ ++.+.++|...+. +..+. ||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 369999999999999999873 4589999999999888754 43 4567777765442 22222 8999986
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.15 Score=55.41 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=62.0
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH--HHcCCCc-----eEEeecccCCCCCC-CCccEEEe
Q 005959 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT--LERGLPA-----MIGSFASKQLPYPS-LSFDMLHC 323 (667)
Q Consensus 252 ~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A--~ergl~~-----~~~~~da~~Lpfpd-~sFDlV~~ 323 (667)
..+.+|||+|.|+|.-...+..--..-.+++-++.|+..-+.. .+.++.. .-......+++++. ..|++|+.
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 3567899999999976655543311122344556666543322 1222110 11112233455442 36777776
Q ss_pred cccccccccCH--HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 ARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 s~~ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
..-+++....- ...++.+..++.|||.|+|.+++...
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 65544433111 23788899999999999999987643
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.63 Score=51.40 Aligned_cols=127 Identities=14% Similarity=0.126 Sum_probs=83.9
Q ss_pred cccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCcee--------------------------
Q 005959 226 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTM-------------------------- 279 (667)
Q Consensus 226 ~yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~-------------------------- 279 (667)
.+++.+..-+.++..+-...+ +. ....++|==||+|++....+..+....
T Consensus 168 ~~~g~ApLketLAaAil~lag--w~--~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~e 243 (381)
T COG0116 168 VYDGPAPLKETLAAAILLLAG--WK--PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREE 243 (381)
T ss_pred ccCCCCCchHHHHHHHHHHcC--CC--CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHH
Confidence 344445555566655543333 22 125899999999999887776532111
Q ss_pred ------------EEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc-cccccC--H----
Q 005959 280 ------------CIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG-VDWDQK--D---- 334 (667)
Q Consensus 280 ------------sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l-l~~~~d--~---- 334 (667)
.+++.|+++.+++.|+.+ |+. +.|.++++..++-+-+.+|+|+|+--. .-.... .
T Consensus 244 a~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY 323 (381)
T COG0116 244 AEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLY 323 (381)
T ss_pred HHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHH
Confidence 277999999999988754 443 567888988887554789999998430 111111 1
Q ss_pred HHHHHHHHhcccCCeEEEEEeC
Q 005959 335 GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 335 ~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..+...+++.++--+.++|+..
T Consensus 324 ~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 324 REFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHhcCCceEEEEcc
Confidence 2355567788888889998876
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.04 Score=56.84 Aligned_cols=132 Identities=12% Similarity=0.189 Sum_probs=66.6
Q ss_pred ceeEEEeccccchh----hhhhhhhcCCCeEEEEeecCCCCCchhhHhcccc---ccc-ccccccCCCCC-----CCccc
Q 005959 515 MVRNVLDMNAHFGG----FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGF---VGV-LHDWCEAFPTY-----PRTYD 581 (667)
Q Consensus 515 ~~R~vlDm~~~~g~----faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGl---ig~-~~~~c~~f~ty-----p~tyD 581 (667)
.-++|||+|||+|. +|+++.. +-.|.++=+-|.....--..+-.-|+ |-+ ..|..+.++.. ..+||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 36789999998886 3344432 12344433333211100011122233 111 22333333221 25899
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc---------C----H----HHHHHHHHHHh----hCCCe
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD---------T----A----RLIESARALTT----RLKWD 640 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d---------~----~----~~~~~~~~~~~----~~~W~ 640 (667)
+|..+.-=..|. .++-++=|+|||||.+|+-+ . . .....++++.+ .=+|+
T Consensus 147 ~VfiDa~k~~y~---------~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~ 217 (234)
T PLN02781 147 FAFVDADKPNYV---------HFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE 217 (234)
T ss_pred EEEECCCHHHHH---------HHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence 998754333332 56666779999999999621 1 0 12344444433 33455
Q ss_pred eEEeeeccCCCccEEEEEcc
Q 005959 641 ARVIEIESNSDERLLICQKP 660 (667)
Q Consensus 641 ~~~~~~~~~~~~~~li~~K~ 660 (667)
+.+... .++++|++|.
T Consensus 218 ~~~lp~----gdG~~i~~k~ 233 (234)
T PLN02781 218 ISQISI----GDGVTLCRRL 233 (234)
T ss_pred EEEEEe----CCccEEEEEe
Confidence 555432 3678888875
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.034 Score=56.86 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=57.4
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchh-hHhcccccccc--------------cccccCCCCC---C-C
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP-MILDRGFVGVL--------------HDWCEAFPTY---P-R 578 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~-~~~~RGlig~~--------------~~~c~~f~ty---p-~ 578 (667)
.|||.|||.|-.|.+|.+.+..|..+=++|. -+. ++-++|+.... +-+|.-+..+ + .
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V~avD~s~~----Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEVLGVELSEL----AVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeEEEEccCHH----HHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 8999999999999999986665555544443 121 23456653211 1122212111 1 2
Q ss_pred ccccccccCccccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 579 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 579 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
+||+|-...+|.+.. ...-..++-.|-++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l~----~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALP----EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCC----HHHHHHHHHHHHHHcCCCCeEEE
Confidence 577777666665542 12234678899999999996443
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.11 Score=58.26 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=53.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh---cc-cccc----ccccccc-CCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DR-GFVG----VLHDWCE-AFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~---~R-Glig----~~~~~c~-~f~typ~tyDl~H~~ 586 (667)
.+||||+||.||++.+|.+.- + .-.|+-.|-. ..+..+- +| |+-- +-.|... .+..-+.+||.|.++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~-~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELA-P--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 489999999999999988631 1 0123333433 3333332 22 4310 1112211 110123689999854
Q ss_pred C------ccccccCC---CCCCC-------cchhheeccccccCCcEEEEE
Q 005959 587 G------LLSLESGH---RHRCS-------TLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 587 ~------~~~~~~~~---~~~c~-------~~~~l~E~dRiLRP~G~~i~~ 621 (667)
- ++.....- ...-. -..+|-++=|+|||||.+|++
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 22211000 00000 126888999999999999997
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.36 Score=52.78 Aligned_cols=104 Identities=15% Similarity=0.051 Sum_probs=70.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--------CCceEEeecccCC-CCCCCCcc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--------LPAMIGSFASKQL-PYPSLSFD 319 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--------l~~~~~~~da~~L-pfpd~sFD 319 (667)
..++||-+|.|.|...+.+.+. ....+|+-+|.++.|++.++.. . ..+.+...|+.++ .-..+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 4578999999999999999876 2367899999999999988732 1 1223343343222 22345899
Q ss_pred EEEecccccccccCH-----HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 320 MLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 320 lV~~s~~ll~~~~d~-----~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.|+.-.- -.-.+.. ..+..-+.|.|+++|.+++..-.+
T Consensus 368 ~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 368 VVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred EEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 9987532 1101111 246777889999999999976543
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.12 Score=55.33 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=62.7
Q ss_pred ceeEEEeccccchhhhhhhhhcC-CCeEEEEeecCCC-CCchhhHhc----ccccccccccccCCCCCC--Ccccccccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIG-TNHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVHAE 586 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~-~~~l~~~~~----RGlig~~~~~c~~f~typ--~tyDl~H~~ 586 (667)
.-+||||+|||+|-+|=|.+..+ ++|. -+|- +-.+.++.| -|+--+.+.-+-.-++.| +.||+|=|+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~-----g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN 236 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVV-----GVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN 236 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEE-----EecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh
Confidence 46899999999998876555421 2222 2222 133333333 111101111111122233 489999884
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcCHH-HHHHHHHHHhhCCCeeEEee
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR-LIESARALTTRLKWDARVIE 645 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~-~~~~~~~~~~~~~W~~~~~~ 645 (667)
=+=.... .+.=++-|.|+|||++|++.--+ ..+.+.+-..+=.|++..+.
T Consensus 237 ILA~vl~---------~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 237 ILAEVLV---------ELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred hhHHHHH---------HHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 3212111 34456789999999999986321 23445555555567766554
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.067 Score=56.03 Aligned_cols=90 Identities=23% Similarity=0.473 Sum_probs=62.2
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchh-hHhcccc--cccccccccCCCCCCCccccccccCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP-MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~-~~~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
+..++||+|||-|+--+.|... .=.|.-++...... ---+||+ +.+. +|.+. +..||+|-|-.++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-----f~~v~aTE~S~~Mr~rL~~kg~~vl~~~-~w~~~----~~~fDvIscLNvL-- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-----FKEVYATEASPPMRWRLSKKGFTVLDID-DWQQT----DFKFDVISCLNVL-- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-----cceEEeecCCHHHHHHHHhCCCeEEehh-hhhcc----CCceEEEeehhhh--
Confidence 4678999999999998888531 12344444442222 2345886 4433 47643 4679999996665
Q ss_pred ccCCCCCCCcc-hhheeccccccCCcEEEEE
Q 005959 592 ESGHRHRCSTL-DIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 592 ~~~~~~~c~~~-~~l~E~dRiLRP~G~~i~~ 621 (667)
+||.-+ .+|-+|-+-|+|+|.+|+.
T Consensus 162 -----DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 -----DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -----hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 578766 6778899999999999973
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.23 Score=50.32 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=32.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e 296 (667)
-.+.|||||.|.+...|+.. ++...+.|+++--..-+..++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~-fPdtLiLGmEIR~KVsdYVk~ 102 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPK-FPDTLILGMEIRDKVSDYVKE 102 (249)
T ss_pred ceEEeeccCccchhhhcccc-CccceeeeehhhHHHHHHHHH
Confidence 35899999999999999987 566778899887665554443
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.11 Score=54.38 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=60.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEE------EEeecCCC-CCchhhHhcccc-cccccc----c-c-----cCCCCCCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWV------MNVVPTIG-TNHLPMILDRGF-VGVLHD----W-C-----EAFPTYPR 578 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwv------mnv~p~~~-~~~l~~~~~RGl-ig~~~~----~-c-----~~f~typ~ 578 (667)
=.||||.||+|--|=.+++. |=. -+|+-.|- +.+|.+...|-. -+..-+ | | .|||+ .
T Consensus 102 m~~lDvaGGTGDiaFril~~---v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd--~ 176 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRH---VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD--D 176 (296)
T ss_pred CeEEEecCCcchhHHHHHHh---hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC--C
Confidence 68999999999888777752 222 23333443 367776655542 111222 3 2 35665 9
Q ss_pred ccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 579 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 579 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+||+.-.+.-.-.++ .++..|-|+-|+|+|||-|.+=+
T Consensus 177 s~D~yTiafGIRN~t------h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVT------HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred cceeEEEecceecCC------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999876544333322 36689999999999999988743
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.063 Score=58.09 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=61.3
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccccc--c-ccccccCCCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVG--V-LHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGlig--~-~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.|||.+||.|+|...+...+. .|+=.|.. ..+..+- .-|+-. + ..|-. .++.-+.+||+|=++--|
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~-----~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGA-----KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPY 258 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCC-----eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCC
Confidence 799999999999654433222 23333432 2222111 124322 1 12222 233223689999886443
Q ss_pred ccccCC-CC--CCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCC
Q 005959 590 SLESGH-RH--RCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW 639 (667)
Q Consensus 590 ~~~~~~-~~--~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W 639 (667)
...... .+ ......+|-|+-|+|+|||++++--... .+++++++.--|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 221100 01 1224588999999999999988753322 144456666666
|
This family is found exclusively in the Archaea. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.09 Score=54.30 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=60.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-------ccccc-ccccccCCCCCCCcccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-------GFVGV-LHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-------Glig~-~~~~c~~f~typ~tyDl~H~~ 586 (667)
=++|||+|||.|+|.-.|++. .+ =.|+-+|.. ++|.--+.. +..-+ +.+|-+-.+.++ ++|+..++
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~--ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~-~~DvsfiS 150 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK--GA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFA-TFDVSFIS 150 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc--CC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCce-eeeEEEee
Confidence 358999999999999999873 21 123333433 344321211 22111 235555433322 45544432
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEE-------------------EcCH---HHHHHHHHHHhhCCCeeEEe
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII-------------------RDTA---RLIESARALTTRLKWDARVI 644 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~-------------------~d~~---~~~~~~~~~~~~~~W~~~~~ 644 (667)
.. .+|-.|.++|+| |.+|+ +|.. .+++++...+.++-|++.-.
T Consensus 151 ~~--------------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 151 LI--------------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred hH--------------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 21 245556666666 55553 4433 56778888888888886544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.1 Score=58.84 Aligned_cols=103 Identities=19% Similarity=0.216 Sum_probs=56.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||||||.|+++.+|.+.-.+- ..|+-.|-. +.+..+-+ .|+ .=+-.|..+....++.+||+|=++--
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 579999999999998887621010 123333433 33433322 243 11224444333344578999865432
Q ss_pred cccccC---------CCCCCCc-------chhheeccccccCCcEEEEE
Q 005959 589 LSLESG---------HRHRCST-------LDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 589 ~~~~~~---------~~~~c~~-------~~~l~E~dRiLRP~G~~i~~ 621 (667)
.+.... ......+ ..+|-+.=|+|+|||.+|+.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 111000 0000111 24788889999999999975
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.18 Score=43.81 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=54.8
Q ss_pred EEeccccchh--hhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc-------cccccccccc-CCCCCC-Ccccccccc
Q 005959 519 VLDMNAHFGG--FNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-------FVGVLHDWCE-AFPTYP-RTYDLVHAE 586 (667)
Q Consensus 519 vlDm~~~~g~--faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG-------lig~~~~~c~-~f~typ-~tyDl~H~~ 586 (667)
++|+|||.|. +.+.+.. ....+.. .+.. ..+.....+. +-.+..+... .++.-. .+||++ +.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~--~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGG--RGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCC--CCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 9999999998 4555543 2223333 2322 2222222211 1233334433 133322 389999 76
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
.....+. . ...++-|+-|+|+|+|.+++.+..
T Consensus 126 ~~~~~~~---~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLL---P---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcC---C---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 6555443 2 568999999999999999987543
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.28 Score=55.13 Aligned_cols=103 Identities=21% Similarity=0.273 Sum_probs=56.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh---cc-cc-c-ccccccccCCCCC-CCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DR-GF-V-GVLHDWCEAFPTY-PRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~---~R-Gl-i-g~~~~~c~~f~ty-p~tyDl~H~~~~ 588 (667)
..|||+|||.|+++.+|.+.... -.|+-.|-. ..+..+- +| |+ + =+.+|-.+....+ +.+||.|=++--
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQ---AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 36999999999999998873221 123444443 3333332 22 32 1 1223433322222 368999985442
Q ss_pred cccc---cCC------CCCCC-------cchhheeccccccCCcEEEEEc
Q 005959 589 LSLE---SGH------RHRCS-------TLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 589 ~~~~---~~~------~~~c~-------~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++.. ... ...-. ...+|-+.=++|+|||.+++..
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2211 000 00000 1257888899999999999863
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.25 Score=51.85 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=53.0
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc---c-cc--cccc-cccccCCCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD---R-GF--VGVL-HDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~---R-Gl--ig~~-~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
+||||+||.|+++.+|.+.-.+- -.|+-.|-. .-+..+-+ | |+ |-++ +|- ..++.....||.|-++-=.
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNE--GAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCC--CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEcCCC
Confidence 59999999999998776521000 024444544 33333322 2 43 1122 222 2233333469988754322
Q ss_pred cccc---CC------CCCCCc-------chhheeccccccCCcEEEEE
Q 005959 590 SLES---GH------RHRCST-------LDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~---~~------~~~c~~-------~~~l~E~dRiLRP~G~~i~~ 621 (667)
|..- .. ...-.+ ..+|-++=++|||||++|++
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2110 00 000011 25888889999999999997
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.74 Score=50.25 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 253 ~~~~VLDIGCG-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
++.+|+=+|+| .|.++..+++.- ...|+++|.+++-.+.|++-|....+...+...+.--.+.||+|+..-
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv------ 237 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV------ 237 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC------
Confidence 34788888877 567888888741 267999999999999999988655543222222222123499998762
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. ...+....+.||+||.+++....
T Consensus 238 ~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C--hhhHHHHHHHHhcCCEEEEECCC
Confidence 1 45778889999999999998765
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.42 Score=48.56 Aligned_cols=134 Identities=22% Similarity=0.352 Sum_probs=85.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cchh----hHhcccc----cccccc-----c--ccCCCCCCCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGF----VGVLHD-----W--CEAFPTYPRTYD 581 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~----~~~~RGl----ig~~~~-----~--c~~f~typ~tyD 581 (667)
.||.+|+|+|--|+++.. ..|-+ ---|.|-. +.++ -+-+-|+ ..+.-| | ..+-+.++.+||
T Consensus 28 ~vLEiaSGtGqHa~~FA~-~lP~l--~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQ-ALPHL--TWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHH-HCCCC--EEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 799999999987777765 24432 35677765 3323 2345564 222222 2 222334678999
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEE------------------------cC---HHHHHHHHHHH
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR------------------------DT---ARLIESARALT 634 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~------------------------d~---~~~~~~~~~~~ 634 (667)
.|-|..++.--. ....+-++-+.-|+|+|||.+++- |. ..-++.|.++|
T Consensus 105 ~i~~~N~lHI~p----~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA 180 (204)
T PF06080_consen 105 AIFCINMLHISP----WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALA 180 (204)
T ss_pred eeeehhHHHhcC----HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHH
Confidence 999988864321 112346899999999999999972 11 13367888999
Q ss_pred hhCCCeeEEeeeccCCCccEEEEEc
Q 005959 635 TRLKWDARVIEIESNSDERLLICQK 659 (667)
Q Consensus 635 ~~~~W~~~~~~~~~~~~~~~li~~K 659 (667)
.+-..+.... ++=-...++|||+|
T Consensus 181 ~~~GL~l~~~-~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 181 AAHGLELEED-IDMPANNLLLVFRK 204 (204)
T ss_pred HHCCCccCcc-cccCCCCeEEEEeC
Confidence 9877775433 11122588999997
|
The function of this family is unknown. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.7 Score=45.52 Aligned_cols=128 Identities=18% Similarity=0.237 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+.+|+|||||.=-++....... ....++++|++..++++... .+.+..+...|...-+ +....|+.+..-+ +
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~-l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKT-L 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--H
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHH-H
Confidence 36899999999999988877553 34589999999999876543 3556666555544333 3457999988765 5
Q ss_pred ccccCH--HHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHH-hhhhhhhhhhhccceEE
Q 005959 329 DWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ-KRWNFVRDFVENLCWEL 387 (667)
Q Consensus 329 ~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~-~~W~~ie~l~~~~~W~l 387 (667)
+..+.. ...+.-+..+=.| .+++|.|.... +. |+.-.. ..-..++.++....|..
T Consensus 182 p~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL-~g-R~~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALRSP--HVVVSFPTRSL-GG-RNKGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSCES--EEEEEEES---------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred HHHHHHhcchHHHHHHHhCCC--eEEEecccccc-cc-CccccccCHHHHHHHhcccCCcee
Confidence 544332 1223333333222 56666664432 21 222111 22345677787878874
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.38 Score=49.72 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=71.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC--CchhhHhcccc--cccc-cccccCCCCCC--CccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT--NHLPMILDRGF--VGVL-HDWCEAFPTYP--RTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~--~~l~~~~~RGl--ig~~-~~~c~~f~typ--~tyDl~H~~~~~ 589 (667)
..+++||||.|.|-++|...+=.+-..-|=+...- .-+.-|-+.|| |-++ +|=-+-+..++ .+.|-|+- .|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--NF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--EC
Confidence 48999999999999999874323322232222221 34456677777 4444 22223333333 37887775 45
Q ss_pred -ccccCCCC--CCCc-chhheeccccccCCcEEEEE-cCHHHHHH-HHHHHhh
Q 005959 590 -SLESGHRH--RCST-LDIFTEIDRILRPEGWVIIR-DTARLIES-ARALTTR 636 (667)
Q Consensus 590 -~~~~~~~~--~c~~-~~~l~E~dRiLRP~G~~i~~-d~~~~~~~-~~~~~~~ 636 (667)
+.|...++ |--+ ...|-++-|+|+|||.+-+. |..+..+. +......
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 44654444 3333 37788899999999999996 55555555 5554444
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.21 Score=54.19 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=47.0
Q ss_pred eEEEeccccchhhhhhhhhcCCC-eEEEEeecCCCC-CchhhHh----cccc---cccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMIL----DRGF---VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~-vwvmnv~p~~~~-~~l~~~~----~RGl---ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|.+++.|.+.-.. --|+. +|-. .-+..+- ..|+ .=+..|-.+..+. ...||+|.++.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~Vvg---VDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~~fD~Ii~~~ 157 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVS---VEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FAPYDVIFVTV 157 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEE---EECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cCCccEEEECC
Confidence 37999999999999998752111 01222 2222 2222221 2233 1112232222222 24699998743
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
-.. .+.-.+-|.|+|||.+++-.
T Consensus 158 g~~------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 GVD------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred chH------------HhHHHHHHhcCCCCEEEEEe
Confidence 221 12223557899999988743
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.35 Score=54.54 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=55.2
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc---ccccccccCCC-CCCCccccccccCc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFP-TYPRTYDLVHAEGL 588 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli---g~~~~~c~~f~-typ~tyDl~H~~~~ 588 (667)
+||||+||.||.+.+|.+.-.+- -.|+-.|-. .-+..+-+ .|+- -+.+|... ++ ..+.+||.|=++--
T Consensus 240 ~VLD~cagpGgkt~~la~~~~~~--g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 240 RVLDTCAAPGGKTTAIAELMKDQ--GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVDAP 316 (431)
T ss_pred EEEEeCCCccHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEECCC
Confidence 69999999999988877521110 134444554 44444332 2441 22334432 23 12467999876432
Q ss_pred cccccCCCCC----C-----Cc-------chhheeccccccCCcEEEEE
Q 005959 589 LSLESGHRHR----C-----ST-------LDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 589 ~~~~~~~~~~----c-----~~-------~~~l~E~dRiLRP~G~~i~~ 621 (667)
-|....-+.+ . .+ ..+|-+.=+.|+|||.++++
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2211100000 0 00 25677888999999999986
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.34 Score=51.99 Aligned_cols=136 Identities=12% Similarity=0.109 Sum_probs=72.8
Q ss_pred ceeEEEeccccchhhhhhhhhcC--CCeEEEEeecCCCC-Cchh---hHh--cccccc----cccccccCCCCCCCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGT-NHLP---MIL--DRGFVG----VLHDWCEAFPTYPRTYDL 582 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~--~~vwvmnv~p~~~~-~~l~---~~~--~RGlig----~~~~~c~~f~typ~tyDl 582 (667)
.-+.|+|+|||-|++.|.++... ...-+.| +|.. ..+. -.+ +.|+=. ..+|--+..+ -...||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~g---iD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHN---FDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEE---EeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCE
Confidence 45889999999998866554310 1122222 2322 1111 111 234310 1122223221 1267999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH---HHHHHHH--HHHhhCCCeeEEeeeccCC-CccEEE
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---RLIESAR--ALTTRLKWDARVIEIESNS-DERLLI 656 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---~~~~~~~--~~~~~~~W~~~~~~~~~~~-~~~~li 656 (667)
|-+. .+..+. +-.-..+|-.+=|.|||||++++|--. ..+-.+- ...+ .|+....-+-.++ -+-++|
T Consensus 199 VF~~-ALi~~d----k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~v~Nsvi~ 271 (296)
T PLN03075 199 VFLA-ALVGMD----KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDEVINSVII 271 (296)
T ss_pred EEEe-cccccc----cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCCceeeEEE
Confidence 9998 544432 122246888899999999999999522 1111100 1111 7887666544443 467888
Q ss_pred EEccc
Q 005959 657 CQKPF 661 (667)
Q Consensus 657 ~~K~~ 661 (667)
.+|+-
T Consensus 272 ~r~~~ 276 (296)
T PLN03075 272 ARKPG 276 (296)
T ss_pred EEeec
Confidence 88864
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.47 Score=53.60 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=59.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccc---cccccccccCCCCCCCcccccccc--
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF---VGVLHDWCEAFPTYPRTYDLVHAE-- 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGl---ig~~~~~c~~f~typ~tyDl~H~~-- 586 (667)
..|||+|||.|+++.+|.+.-.+- -.|+-.|-. .-+..+- ..|+ --+.+|.....+ +.+||.|=++
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~--~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP--EEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc--CCCCCEEEEcCC
Confidence 469999999999887776410000 124444444 3333222 2343 122234333222 3679999743
Q ss_pred --Cc--ccc-----ccCCCCCCCc-------chhheeccccccCCcEEEEEc----CHHHHHHHHHHHh
Q 005959 587 --GL--LSL-----ESGHRHRCST-------LDIFTEIDRILRPEGWVIIRD----TARLIESARALTT 635 (667)
Q Consensus 587 --~~--~~~-----~~~~~~~c~~-------~~~l~E~dRiLRP~G~~i~~d----~~~~~~~~~~~~~ 635 (667)
+. +.. |.. ....+ ..+|-++=|+|||||.+++.. ..+.-+.|+.+++
T Consensus 328 csg~g~~~r~p~~~~~~--~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~ 394 (445)
T PRK14904 328 CTGTGVLGRRAELRWKL--TPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQ 394 (445)
T ss_pred CCCcchhhcCcchhhcC--CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 22 110 110 01111 157889999999999999974 2233344455544
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.76 E-value=1.5 Score=48.90 Aligned_cols=111 Identities=22% Similarity=0.330 Sum_probs=73.8
Q ss_pred cccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCceE-EeecccCCC---CCCCCcc
Q 005959 248 NFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMI-GSFASKQLP---YPSLSFD 319 (667)
Q Consensus 248 ~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~----A~ergl~~~~-~~~da~~Lp---fpd~sFD 319 (667)
.+.|.++-+|||+-+.+|.=|.+++..--....|.+.|.+..-+.. +.+.|+...+ ...|...+| |+. +||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccc
Confidence 3446677899999999998777776542234568899988776644 3444665443 455655554 555 899
Q ss_pred EEE----eccccccc-------c----------cCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 320 MLH----CARCGVDW-------D----------QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 320 lV~----~s~~ll~~-------~----------~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
-|. |+...+.. . .-..++|......+++||+|+.++-...
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 997 44311111 0 1123578888999999999999987554
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.7 Score=47.07 Aligned_cols=104 Identities=10% Similarity=-0.047 Sum_probs=53.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhc---CCceeEEEEecCCHHHHHH-HHHc---CCCceEEeecccCCCC--------CCCC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQL-TLER---GLPAMIGSFASKQLPY--------PSLS 317 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~---g~~~~sV~gvD~S~~ml~~-A~er---gl~~~~~~~da~~Lpf--------pd~s 317 (667)
+++.|+|+|.-.|..+..+++. -.....|.++|+....... +.+. ...+.+.+++...... ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 3589999999998877766542 1134679999995433322 2222 1355666666543321 1123
Q ss_pred ccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 318 FDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 318 FDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
-.+|+-- + .|..++..+.|+....++++|+|+++.|...
T Consensus 112 ~vlVilD-s-~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVILD-S-SHTHEHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp SEEEEES-S-----SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ceEEEEC-C-CccHHHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 3344433 3 5555677788888999999999999977643
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=88.93 E-value=2 Score=41.22 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=50.5
Q ss_pred EEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC-C-CCCCccEEEeccccccccc-----CH---HHHHHHHHh
Q 005959 280 CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-Y-PSLSFDMLHCARCGVDWDQ-----KD---GILLLEVDR 343 (667)
Q Consensus 280 sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp-f-pd~sFDlV~~s~~ll~~~~-----d~---~~~L~Ei~R 343 (667)
.|.+.|+-+.+++.++++ +. ++.+...+-+++. + +.+.+|+|+.+...+.-.+ .+ -.+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 378999999999877655 32 3455555544544 2 3358999999866444221 11 268999999
Q ss_pred cccCCeEEEEEeCCCCh
Q 005959 344 VLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 344 vLKPGG~Lvis~p~~~~ 360 (667)
+|+|||.+++.......
T Consensus 81 lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HEEEEEEEEEEE--STC
T ss_pred hhccCCEEEEEEeCCCC
Confidence 99999999999875443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.3 Score=50.69 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=64.3
Q ss_pred EEEeccccchhhhhhhhhcCCC--eEEEEeecCCCCCchhhHh-------cccccccccccccCC---CCCCCccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGTNHLPMIL-------DRGFVGVLHDWCEAF---PTYPRTYDLVHA 585 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~--vwvmnv~p~~~~~~l~~~~-------~RGlig~~~~~c~~f---~typ~tyDl~H~ 585 (667)
++|.+|||+|.--=-|++.+.+ +-||.. +. +++-+-+.- .|. -...+|.+.+= |.-+.+.|++-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~ac-Df-sp~Ai~~vk~~~~~~e~~~-~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYAC-DF-SPRAIELVKKSSGYDESRV-EAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEc-CC-ChHHHHHHHhccccchhhh-cccceeccchhccCCCCcCccceEEE
Confidence 8999999999876666654433 444432 00 112222111 222 23344444332 222389999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
-.++|... .-.|...+-.+-|+|+|||.+++||=
T Consensus 151 IFvLSAi~----pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 151 IFVLSAIH----PEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEEEeccC----hHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 99999986 35577899999999999999999963
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.87 Score=51.98 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=86.2
Q ss_pred ccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhh---cCCceeEEEEecCCHHHHHHHH
Q 005959 219 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS---KELLTMCIANYEASGSQVQLTL 295 (667)
Q Consensus 219 ~F~~~~~~yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~---~g~~~~sV~gvD~S~~ml~~A~ 295 (667)
.|.++.--| ..|.+.+.+.|..... .-.......|+-+|+|.|-+.....+ .-...+.+++++-+++++-..+
T Consensus 337 tFEkD~VKY---~~Yq~Ai~~AL~Drvp-d~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~ 412 (649)
T KOG0822|consen 337 TFEKDPVKY---DQYQQAILKALLDRVP-DESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ 412 (649)
T ss_pred hhhccchHH---HHHHHHHHHHHHhhCc-ccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh
Confidence 555554444 4455566555543321 01111256788999999987654433 2234678999999998876555
Q ss_pred HcC-----CCceEEeecccCCCCCCCCccEEEecccccccccCH--HHHHHHHHhcccCCeEEEEEe
Q 005959 296 ERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 296 erg-----l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.++ -.+.++..|+..++-|..+.|++++... =.+.++. ...|.-+-+.|||+|+.+=+.
T Consensus 413 ~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELL-GSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 413 NRNFECWDNRVTIISSDMRKWNAPREQADIIVSELL-GSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred hhchhhhcCeeEEEeccccccCCchhhccchHHHhh-ccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 443 3466777899999866689999998633 3333333 579999999999999877443
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.53 Score=53.55 Aligned_cols=69 Identities=26% Similarity=0.343 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 305 (667)
+-++..+.+.+.+..+ ..+||+=||||.++..+++. +..|.|+++++..+..|+.. |+ ++.|.+
T Consensus 369 evLys~i~e~~~l~~~--------k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~ 437 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPAD--------KTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIV 437 (534)
T ss_pred HHHHHHHHHHhCCCCC--------cEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeee
Confidence 3344455555554433 78999999999999999876 56799999999999887654 33 445666
Q ss_pred ecccC
Q 005959 306 FASKQ 310 (667)
Q Consensus 306 ~da~~ 310 (667)
+-+++
T Consensus 438 gqaE~ 442 (534)
T KOG2187|consen 438 GQAED 442 (534)
T ss_pred cchhh
Confidence 63333
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=88.67 E-value=0.21 Score=48.28 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=35.2
Q ss_pred ccCCCCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 570 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 570 c~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++.+|.-+.+||+|=+..++..+. +....|-||-|+|+|||.+++-|
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNVV------DRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcCC------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 344554347999998876665543 33478999999999999999865
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.57 E-value=2.4 Score=46.56 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC-----C-CC-CCCCccEEEecc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----L-PY-PSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-----L-pf-pd~sFDlV~~s~ 325 (667)
..+||.+|||. |..+..+++.. ....+++++.++++++.+++.+ ...+....... + .+ ....+|+|+-.-
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 47899999987 88888888762 1234888999999999998873 12222111110 1 12 233699998752
Q ss_pred cc--------------cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CG--------------VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~l--------------l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.. ++-..+....+.++.+.|+|+|.+++...
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 10 00112335688999999999999998754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.85 Score=45.68 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=67.4
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC----CchhhHh-cccccc----cccccccCCCCCCCccccccccCc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLPMIL-DRGFVG----VLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~----~~l~~~~-~RGlig----~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
+|||.|||-|.+--.|.+..-+- -++=+|=. ...+-|. .+|+-- .-.|--.| ...+.-||+||--+-
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~---~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS---KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC---CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCc
Confidence 89999999999998888632111 01112211 1122233 345421 11122222 233477999999888
Q ss_pred cccccC--CCCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCC
Q 005959 589 LSLESG--HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK 638 (667)
Q Consensus 589 ~~~~~~--~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~ 638 (667)
|+...- ....-....++==++++|+|||.|+|..=.-+.+++.+....-.
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFN 197 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCC
Confidence 877541 00112223455568899999999999877666666665544443
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.32 Score=51.15 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=52.1
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-----c-c----cccc-cccccCCCCCCCccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----G-F----VGVL-HDWCEAFPTYPRTYDLV 583 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-----G-l----ig~~-~~~c~~f~typ~tyDl~ 583 (667)
-++||++|||.|+++..++.. .++ .+|+-++-. +.+..+-+. | + +-+. .|-.+-....+++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~-~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKH-KSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhC-CCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 458999999999999888762 222 223333322 222222110 0 0 1111 12111112335789999
Q ss_pred cccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 584 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
=.+... .... ...--....+-.+-|+|+|||.+++.
T Consensus 150 i~D~~~-~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTD-PVGP-AETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCC-CCCc-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 765432 1110 00011224455778999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.8 Score=50.55 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=55.5
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc--------cc-c-----cccccccccCCCCCCCc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD--------RG-F-----VGVLHDWCEAFPTYPRT 579 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~--------RG-l-----ig~~~~~c~~f~typ~t 579 (667)
.-++||++|||.|+.+..+++. .++- +|+-++-. .-+.++-+ +| + --++.|-.+-...-++.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~--~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVL--HVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCC--eEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 3579999999999998888862 2222 23333322 22322222 11 1 00122222212222467
Q ss_pred cccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 580 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 580 yDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
||+|=++- .........+---...+-.+-|.|+|||.++.+..
T Consensus 227 YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99998862 22211000011112466788999999999998754
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.7 Score=46.08 Aligned_cols=138 Identities=17% Similarity=0.224 Sum_probs=76.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc-------ccccccccc--cccCCCCCC---Ccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD-------RGFVGVLHD--WCEAFPTYP---RTYDLVH 584 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~-------RGlig~~~~--~c~~f~typ---~tyDl~H 584 (667)
.++|+|||.|.-+-+|+. +.+ ---|..+|-. .-+.++-| -|-|++.|. --+.|-+|| .+||++=
T Consensus 151 ~ildlgtGSGaIslsll~-~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLH-GLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred eEEEecCCccHHHHHHHh-cCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 799999999999999986 233 1112222322 33333333 466888876 445566666 7899887
Q ss_pred ccCcc--cccc----------------CCCCCCC--cchhheeccccccCCcEEEEE-----cCHHHHHHHHHHHhhCC-
Q 005959 585 AEGLL--SLES----------------GHRHRCS--TLDIFTEIDRILRPEGWVIIR-----DTARLIESARALTTRLK- 638 (667)
Q Consensus 585 ~~~~~--~~~~----------------~~~~~c~--~~~~l~E~dRiLRP~G~~i~~-----d~~~~~~~~~~~~~~~~- 638 (667)
++-=. +.-. .++..|. +..+..=.-|.|+|||++++. +....+..+.....--+
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~ 307 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSN 307 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhcc
Confidence 76432 2110 0001111 114445567999999999985 33445555444333333
Q ss_pred CeeEEeeeccCCCccEEEEEc
Q 005959 639 WDARVIEIESNSDERLLICQK 659 (667)
Q Consensus 639 W~~~~~~~~~~~~~~~li~~K 659 (667)
|.+.+. .+-...+++++..+
T Consensus 308 ~~~~v~-~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 308 GKAAVV-SDFAGRPRFVIIHR 327 (328)
T ss_pred chhhee-ecccCCcceEEEEe
Confidence 555544 23334566666543
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=87.66 E-value=2 Score=46.25 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=48.2
Q ss_pred chhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCC--c
Q 005959 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP--A 301 (667)
Q Consensus 229 ~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~--~ 301 (667)
....|+..+++++...... ....-++||||+|....=..|..+- ...+++|.|+++..++.|++. ++. +
T Consensus 81 ~R~nYi~~i~DlL~~~~~~---~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I 156 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPG---IPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRI 156 (299)
T ss_dssp HHHHHHHHHHHHHT--TCG---CS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTE
T ss_pred hhHHHHHHHHHHhhccccc---cccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccce
Confidence 3468888888888754430 1124689999999874433333221 246799999999999988743 232 2
Q ss_pred eEEeec-c----cCCCCCCCCccEEEeccccc
Q 005959 302 MIGSFA-S----KQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 302 ~~~~~d-a----~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+.... . ..+..+++.||+.+|+--++
T Consensus 157 ~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 157 ELRKQKNPDNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp EEEE--ST-SSTTTSTT--S-EEEEEE-----
T ss_pred EEEEcCCccccchhhhcccceeeEEecCCccc
Confidence 222111 1 11223346899999996633
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.60 E-value=4.9 Score=42.15 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH--HHHHHc--------CCCceEEeec---ccCCCCCCCC-cc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV--QLTLER--------GLPAMIGSFA---SKQLPYPSLS-FD 319 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml--~~A~er--------gl~~~~~~~d---a~~Lpfpd~s-FD 319 (667)
..+||++|+|+|..+..++... ...+.-.|...... +..... |..+.+..++ .....+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh--cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4679999999998777777642 23455556654332 222111 1122222111 1111111122 99
Q ss_pred EEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 320 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 320 lV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+|+++.|.++ ....+.++.-+...|-.+|.+++..+..
T Consensus 165 lilasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 9999999544 4556778889999999999777776643
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=87.56 E-value=0.36 Score=47.26 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=34.5
Q ss_pred CCCccEEEecccccccc----c---CH---HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 315 SLSFDMLHCARCGVDWD----Q---KD---GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 315 d~sFDlV~~s~~ll~~~----~---d~---~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.++||.+.|..++.|.. - |+ .+++.++.++|||||.|+++.|...
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 36899998887654532 1 11 3789999999999999999999764
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=0.84 Score=51.42 Aligned_cols=117 Identities=16% Similarity=0.232 Sum_probs=59.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc--c-cccccccCC---CCCCCcccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV--G-VLHDWCEAF---PTYPRTYDLVHAE 586 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli--g-~~~~~c~~f---~typ~tyDl~H~~ 586 (667)
.||||+||.|+++.+|.+.-.+- -.|+-.|-. .-+..+-+ -|+- - +-.|-.... +..+.+||.|=++
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQ--GEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 69999999999998887621110 023444443 33333322 2331 1 112221111 1223689988753
Q ss_pred ----Ccccccc--CC---CCCCC-------cchhheeccccccCCcEEEEEc----CHHHHHHHHHHHhh
Q 005959 587 ----GLLSLES--GH---RHRCS-------TLDIFTEIDRILRPEGWVIIRD----TARLIESARALTTR 636 (667)
Q Consensus 587 ----~~~~~~~--~~---~~~c~-------~~~~l~E~dRiLRP~G~~i~~d----~~~~~~~~~~~~~~ 636 (667)
+.-..-+ .. ..... -..+|-++=|+|||||.+|+.. ..+..+.|+.+++.
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 2211100 00 00011 1367889999999999999863 22444555555544
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.49 E-value=5.4 Score=40.73 Aligned_cols=99 Identities=18% Similarity=0.118 Sum_probs=65.3
Q ss_pred cccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH----HHHHHcCCCceEEeecccCCCC----CCCCccEE
Q 005959 250 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLERGLPAMIGSFASKQLPY----PSLSFDML 321 (667)
Q Consensus 250 ~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml----~~A~ergl~~~~~~~da~~Lpf----pd~sFDlV 321 (667)
+-..+.+||=+|+.+|....+++.-- ....+.+++.|+.+. ..|.+|. ++.-...|+ +.|. -=+..|+|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA-~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKRP-NIIPILEDA-RKPEKYRHLVEKVDVI 149 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhCC-Cceeeeccc-CCcHHhhhhcccccEE
Confidence 33456899999999999999888752 234589999997664 4555553 221122233 2331 12358999
Q ss_pred EecccccccccCH-HHHHHHHHhcccCCeEEEEEe
Q 005959 322 HCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 322 ~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
++--+ .++. +.+..++...||+||+++++.
T Consensus 150 y~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 150 YQDVA----QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEecC----CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 87633 2333 457888999999999888764
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.98 E-value=2.9 Score=44.95 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=60.7
Q ss_pred CCEEEEeCCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEe--ecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGS--FASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~--~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+||=+||| .|.++..+++. |. ..|+++|.+++.++.+++.|....+.. .+...+....+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGA--AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--cEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 4788889986 36666666665 32 247788999999999988775433211 011111111235899886522
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+....+.|++||.+++...
T Consensus 245 ----~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ----HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12467788899999999998764
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=86.60 E-value=0.82 Score=49.48 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=52.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-c------cccccc-ccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-V------GVLHDW-CEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-i------g~~~~~-c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++..|.+.+. +|+-.|-. +-|.++-+|.- . +.-.++ +..+...+.+||+|=|..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-----~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-----IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3799999999999999987432 45555554 55555555421 0 011111 112233358899999988
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEE
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVI 619 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i 619 (667)
++.++. . -.+..++-.+-++ .+||.+|
T Consensus 221 vL~H~p---~-~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYP---Q-DKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecC---H-HHHHHHHHHHHhh-cCCEEEE
Confidence 876654 1 1122344444443 4555544
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=86.53 E-value=3.9 Score=43.02 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=61.7
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----CCCCCCccEEEecccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----pfpd~sFDlV~~s~~l 327 (667)
..+||..|+| .|..+..+++.. ...++.++.++...+.+++.+....+.. ..... ....+.+|+|+....
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNS-LDDSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcC-CCcCHHHHHHHhcCCCceEEEECCC-
Confidence 4688888876 477777777752 2347888999999988877665332221 10000 123457999885422
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.++.+.|+++|.++....
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 ------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13578889999999999998654
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=86.42 E-value=0.37 Score=44.25 Aligned_cols=37 Identities=19% Similarity=0.608 Sum_probs=27.5
Q ss_pred CccEEEecccccccc-----cCH-HHHHHHHHhcccCCeEEEEE
Q 005959 317 SFDMLHCARCGVDWD-----QKD-GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 317 sFDlV~~s~~ll~~~-----~d~-~~~L~Ei~RvLKPGG~Lvis 354 (667)
.||+|.|..+ .-|+ ++. ..+++.+++.|+|||.|++.
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4899999865 3332 222 46999999999999999985
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.95 E-value=0.51 Score=50.16 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=53.6
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc------cc-----cc-cccccccCCCCCCCccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF-----VG-VLHDWCEAFPTYPRTYD 581 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R------Gl-----ig-~~~~~c~~f~typ~tyD 581 (667)
.-++|||+|||.|+++..+++. .++- +|+-++-. ..+.++-+. |+ +- +..|-.+-..+-+.+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 3578999999999999998862 2332 23333322 222222110 11 00 11121111222247899
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+|=++. +..+.. ...---...+-++-|+|+|||.+++.
T Consensus 153 vIi~D~-~dp~~~-~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDS-TDPVGP-AEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECC-CCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 997642 222210 00000124566889999999999986
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.95 E-value=1.2 Score=45.84 Aligned_cols=140 Identities=17% Similarity=0.167 Sum_probs=92.6
Q ss_pred CCCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-----cccccccccCCCCCCCccccccc
Q 005959 512 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-----VGVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 512 ~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-----ig~~~~~c~~f~typ~tyDl~H~ 585 (667)
+....|+|-|+|||.|---+.|.. .-|.=+ |.=.|+. +-|--+.+|+. .|=+++||-.-+ .||+.+
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~-RwP~A~--i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~-----~dllfa 98 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLAR-RWPDAV--ITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQP-----TDLLFA 98 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHH-hCCCCe--EeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCc-----cchhhh
Confidence 446799999999999988777775 234322 2334544 66777777874 688999998766 599999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEE--cCH--HHHHHHHHHHhhCCCeeEEeeec----c---------
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTA--RLIESARALTTRLKWDARVIEIE----S--------- 648 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--d~~--~~~~~~~~~~~~~~W~~~~~~~~----~--------- 648 (667)
+-+|.-... +--.+..++ --|+|||++-++ |+. ..-.-|++.|++.-|.....+.- .
T Consensus 99 NAvlqWlpd--H~~ll~rL~----~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~ 172 (257)
T COG4106 99 NAVLQWLPD--HPELLPRLV----SQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYE 172 (257)
T ss_pred hhhhhhccc--cHHHHHHHH----HhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHH
Confidence 999865542 222232333 358999999997 322 23445677777777776554311 0
Q ss_pred ---CCCccEEEEEccccccc
Q 005959 649 ---NSDERLLICQKPFFKRQ 665 (667)
Q Consensus 649 ---~~~~~~li~~K~~~~~~ 665 (667)
.-..+|=||.+.|-++-
T Consensus 173 lLa~~~~rvDiW~T~Y~h~l 192 (257)
T COG4106 173 LLAPLACRVDIWHTTYYHQL 192 (257)
T ss_pred HhCcccceeeeeeeeccccC
Confidence 11467888888886653
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=85.95 E-value=4.5 Score=46.70 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeeccc---------CCC---------
Q 005959 253 GVRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---------QLP--------- 312 (667)
Q Consensus 253 ~~~~VLDIGCGt-G~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~---------~Lp--------- 312 (667)
.+.+|+=+|||. |..+...++. | ..|+++|.+++-++.+++.|........... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 468999999996 5666666654 4 3589999999999999887654221111000 010
Q ss_pred -CCC--CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 313 -YPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 313 -fpd--~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.+ +.+|+|+..-. ..-.+.+..+.++..+.+||||.++....
T Consensus 241 ~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 36999998743 22222333345999999999999887654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=85.48 E-value=0.68 Score=45.52 Aligned_cols=96 Identities=25% Similarity=0.336 Sum_probs=52.4
Q ss_pred ceeEEEeccccch--hhhhhhhhcCCCeEEEEeecCCCCCchh---hHhcc------c-ccccccccccCC--CC-CCCc
Q 005959 515 MVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGTNHLP---MILDR------G-FVGVLHDWCEAF--PT-YPRT 579 (667)
Q Consensus 515 ~~R~vlDm~~~~g--~faa~l~~~~~~vwvmnv~p~~~~~~l~---~~~~R------G-lig~~~~~c~~f--~t-yp~t 579 (667)
.-++||++|||.| |.+++.+. -...|+-+|.+..++ .-.++ + +--.-.+|.++. .. -++.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-----~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-----GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT------T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred CCceEEEECCccchhHHHHHhcc-----CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 4579999999888 77777761 112444455443332 22222 2 234556898754 11 1368
Q ss_pred cccccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 580 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 580 yDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
||+|-|+.|+-... ..+.++-=++++|.|+|-+++.
T Consensus 120 ~D~IlasDv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 120 FDVILASDVLYDEE------LFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp BSEEEEES--S-GG------GHHHHHHHHHHHBTT-TTEEEE
T ss_pred CCEEEEecccchHH------HHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999865432 2345666689999999998874
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=85.41 E-value=1.9 Score=47.07 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=55.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhc---------------CCceeEEEEecCCHH---HH----HHH---HHcCCCceEEe--
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGS---QV----QLT---LERGLPAMIGS-- 305 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~---------------g~~~~sV~gvD~S~~---ml----~~A---~ergl~~~~~~-- 305 (667)
+.-+|+|+||..|..+..+... ..+...|.-.|.-.+ .+ ... ... .+..+..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~gv 94 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVSGV 94 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEEec
Confidence 4568999999999988776543 112345666665322 11 000 011 1223322
Q ss_pred -ecccCCCCCCCCccEEEecccccccccCH------------------------H---------------HHHHHHHhcc
Q 005959 306 -FASKQLPYPSLSFDMLHCARCGVDWDQKD------------------------G---------------ILLLEVDRVL 345 (667)
Q Consensus 306 -~da~~Lpfpd~sFDlV~~s~~ll~~~~d~------------------------~---------------~~L~Ei~RvL 345 (667)
+....--||++|.|+++++.+ +||.... . .+|+-=.+-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEech-hhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 233333489999999999987 8875211 0 1233344568
Q ss_pred cCCeEEEEEeCCCCh
Q 005959 346 KPGGYFVWTSPLTNP 360 (667)
Q Consensus 346 KPGG~Lvis~p~~~~ 360 (667)
+|||++++..++...
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999999876543
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.62 E-value=0.42 Score=50.63 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=58.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCce------------EEeeccc---CCC--CCC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM------------IGSFASK---QLP--YPS 315 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~------------~~~~da~---~Lp--fpd 315 (667)
...+|||+|||.|.-+......+. .++...|.+...++.-.-..+.+. +...... .+- +..
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 468999999999998888877752 567778888776632111110000 0000000 111 111
Q ss_pred -CCccEEEecccccccccCHHHH-HHHHHhcccCCeEEEEEe
Q 005959 316 -LSFDMLHCARCGVDWDQKDGIL-LLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 316 -~sFDlV~~s~~ll~~~~d~~~~-L~Ei~RvLKPGG~Lvis~ 355 (667)
..||+|.++...+. .+....+ .......++++|.++++.
T Consensus 194 ~~~ydlIlsSetiy~-~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYS-IDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhC-cchhhhhHhhhhhhcCCccchhhhhh
Confidence 27899988877444 2333333 667778888899887753
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=84.59 E-value=1.9 Score=43.09 Aligned_cols=136 Identities=20% Similarity=0.315 Sum_probs=79.9
Q ss_pred cchhhhHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEeccccch--hhhhhhhhcCCCeEEEEeecCCCC--
Q 005959 476 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGT-- 551 (667)
Q Consensus 476 ~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~~g--~faa~l~~~~~~vwvmnv~p~~~~-- 551 (667)
...+.|.+.+-+-...+. .+. .... +++|||+|-| |.--|++-++. +|+-.|+.
T Consensus 26 ~~~~~~~~Hi~DSL~~~~-~~~---------------~~~~-~~lDiGSGaGfPGipLaI~~p~~-----~~~LvEs~~K 83 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLP-FLP---------------DFGK-KVLDIGSGAGFPGIPLAIARPDL-----QVTLVESVGK 83 (184)
T ss_dssp SHHHHHHHHHHHHHGGGG-CS----------------CCCS-EEEEETSTTTTTHHHHHHH-TTS-----EEEEEESSHH
T ss_pred CHHHHHHHHHHHHHHhhh-hhc---------------cCCc-eEEecCCCCCChhHHHHHhCCCC-----cEEEEeCCch
Confidence 445678777766654443 221 1111 6999999866 33333332221 23444442
Q ss_pred --Cchh-hHhcccc--cccccccccCCCCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc---C
Q 005959 552 --NHLP-MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD---T 623 (667)
Q Consensus 552 --~~l~-~~~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d---~ 623 (667)
+=|. ++-+=|| +=++|...|. +.++..||+|=|- .-+.+..++--+-+.|+|||.++.-. .
T Consensus 84 K~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR----------Av~~l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 84 KVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTAR----------AVAPLDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp HHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEE----------SSSSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred HHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEee----------hhcCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 2222 4555666 6688888888 7788999999872 44555566666788999999998853 3
Q ss_pred HHHHHHHHHHHhhCCCeeEEe
Q 005959 624 ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 624 ~~~~~~~~~~~~~~~W~~~~~ 644 (667)
.+.++++++-.+.+.++....
T Consensus 153 ~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 153 EEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp HHHHHTHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhHHHHhCCEEeee
Confidence 455666666666666665554
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=83.86 E-value=4.4 Score=43.76 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=44.0
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er 297 (667)
-+.+++.+.+...+ +..++|.=+|.|..+..+++.- ....|+++|.++.+++.++++
T Consensus 7 Vll~Evl~~L~~~~--------ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 7 VLLDEVVEGLNIKP--------DGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred hhHHHHHHhcCcCC--------CCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHH
Confidence 34455555555433 3689999999999999999873 236799999999999999875
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.85 E-value=7.8 Score=44.55 Aligned_cols=120 Identities=21% Similarity=0.204 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHHHc----CCC--c
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLER----GLP--A 301 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g---~~~~sV~gvD~S~~ml~~A~er----gl~--~ 301 (667)
....+.+.+++... ...+|.|-.||+|.+.....+.- .....+.|.+....+...|+.. +++ +
T Consensus 172 ~~v~~liv~~l~~~--------~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~ 243 (489)
T COG0286 172 REVSELIVELLDPE--------PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDA 243 (489)
T ss_pred HHHHHHHHHHcCCC--------CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 33444555555432 33599999999998866655431 1136789999999998887643 444 2
Q ss_pred eEEeecccCCCC-----CCCCccEEEecccc--cccc---------------------cCH-HHHHHHHHhcccCCeEEE
Q 005959 302 MIGSFASKQLPY-----PSLSFDMLHCARCG--VDWD---------------------QKD-GILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 302 ~~~~~da~~Lpf-----pd~sFDlV~~s~~l--l~~~---------------------~d~-~~~L~Ei~RvLKPGG~Lv 352 (667)
.+..++...-|. ..+.||.|+++.-. -.|. ... ..+++.+...|+|||+..
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 344444433332 33679999886321 1111 011 368999999999999777
Q ss_pred EEeCCC
Q 005959 353 WTSPLT 358 (667)
Q Consensus 353 is~p~~ 358 (667)
+..+..
T Consensus 324 ivl~~g 329 (489)
T COG0286 324 IVLPDG 329 (489)
T ss_pred EEecCC
Confidence 666543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=83.79 E-value=1.5 Score=47.37 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=52.4
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC------CchhhHhcccc----cc-cccccccCCCCC-CCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT------NHLPMILDRGF----VG-VLHDWCEAFPTY-PRTYDL 582 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~------~~l~~~~~RGl----ig-~~~~~c~~f~ty-p~tyDl 582 (667)
.-++|||+|||.|+.+..+++. .++..+-+|=.|.. ..++.+ ..|+ +- +..|=-+-.... .+.||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3678999999999999999862 23332222222210 111111 0111 11 111210111122 368999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
|-++. ++.... ...---..++-.+-|.|+|||.++.+
T Consensus 169 Ii~D~-~dp~~~-~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDS-SDPVGP-AQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcC-CCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98753 332210 00000124567789999999999875
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=83.63 E-value=0.42 Score=52.11 Aligned_cols=58 Identities=19% Similarity=0.409 Sum_probs=35.7
Q ss_pred CCCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEE--cCHHHHHHHHH
Q 005959 573 FPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTARLIESARA 632 (667)
Q Consensus 573 f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--d~~~~~~~~~~ 632 (667)
|+.-.+.||+|=|-..+.---. ..-....+|--+-.-|||||+||.. |...+++++++
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fe--se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFE--SEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGS--SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred ccccCCCcceeehHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 3432369999988655432211 2233446788899999999999976 65666566655
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.11 E-value=1.1 Score=49.93 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=66.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc-c----cccccccCCCCC---CCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV-G----VLHDWCEAFPTY---PRTYDLV 583 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli-g----~~~~~c~~f~ty---p~tyDl~ 583 (667)
++|||++||+|+|+-+.+..+. -.|+-+|.. .-+..+-+ -|+- . +..|..+....+ ..+||+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga----~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC----SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC----CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 5799999999999865443211 123344443 33322211 1331 0 112322222222 2579999
Q ss_pred cccCcc-ccccCC--CCCCCcchhheeccccccCCcEEEEEcC------HHHHHHHHHHHhhCCCeeEEee
Q 005959 584 HAEGLL-SLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 584 H~~~~~-~~~~~~--~~~c~~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
=++--+ +..+.. .......+++.-.-++|+|||+++.-.. .+..+.+.+-+..-..++++.+
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 887443 211100 0012344555566789999999998432 3456666666666666666654
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=82.35 E-value=3.6 Score=43.51 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=49.3
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCC--CCCccEEEecc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP--SLSFDMLHCAR 325 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfp--d~sFDlV~~s~ 325 (667)
+++|+-||.|.++..+.+.|+. .+.++|.++..++..+.+... .+...|+..+... ...+|+|+.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999999999888754 478999999998877665322 2444565555432 35699999864
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.20 E-value=7.3 Score=42.58 Aligned_cols=96 Identities=20% Similarity=0.195 Sum_probs=64.8
Q ss_pred CEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC-----CCCCC-CCccEEEecccc
Q 005959 255 RTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----LPYPS-LSFDMLHCARCG 327 (667)
Q Consensus 255 ~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-----Lpfpd-~sFDlV~~s~~l 327 (667)
.+|+=+|||+ |.++..+++. .....|+.+|.++.-++.|++.+....+.....+. +.... ..||+|+=.-.
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 4899999996 8777777665 23456888999999999998854222221111100 11122 36999985422
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
...++..+.+++||||.+++.....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 2358999999999999999887643
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.00 E-value=1.4 Score=46.99 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=56.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cccccccccccCCCCCCCccccccccCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Glig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
..|||+|||.|.|+.+++..... .+|+-+|-. ..+..+-++ ..--+..|-.+... +++||+|=++--|....
T Consensus 66 grVLDLGcGsGilsl~la~r~~~---~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~--~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP---EKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES--NEKFDVVISNPPFGKIN 140 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc--cCCCcEEEEcCCccccC
Confidence 46999999999999888652111 234444543 444444332 11111122222111 36899999987776532
Q ss_pred C--CCC--C---------C-CcchhheeccccccCCcEEEE
Q 005959 594 G--HRH--R---------C-STLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 594 ~--~~~--~---------c-~~~~~l~E~dRiLRP~G~~i~ 620 (667)
. ++. + | .+...+-..-++|.|+|.+++
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 1 001 1 1 135677888999999998775
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.99 E-value=3.6 Score=44.16 Aligned_cols=103 Identities=13% Similarity=0.020 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------CCCceEEeecccCC--CCCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---------gl~~~~~~~da~~L--pfpd~sFDlV 321 (667)
.+++||-||-|.|.+.+..+++ -.+-.+.-+|+....++..++- +..+.+..+|...+ ..+.++||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 5689999999999999888887 3556678888888877766542 22333333332111 1346899999
Q ss_pred EecccccccccCH----HHHHHHHHhcccCCeEEEEEeCC
Q 005959 322 HCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 322 ~~s~~ll~~~~d~----~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.-.. -...+.. +.++..+.+.||+||+++...-.
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 97643 2222221 34778899999999999987643
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.01 E-value=5.7 Score=44.99 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=65.3
Q ss_pred CCCEEEEeCCCCch--HHHHHhhcCCceeEEEEecCCHHHHHHHHH--cC-C---CceE--EeecccCCCCCC-CCccEE
Q 005959 253 GVRTILDIGCGYGS--FGAHLFSKELLTMCIANYEASGSQVQLTLE--RG-L---PAMI--GSFASKQLPYPS-LSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~--~t~~La~~g~~~~sV~gvD~S~~ml~~A~e--rg-l---~~~~--~~~da~~Lpfpd-~sFDlV 321 (667)
.++.++|+|.|.|. .+.....++ ..-.++.+|.+.+|...... |+ - ...+ .+.--..+|... +.||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 45778889888664 344443332 23457889999999876542 22 0 1111 122234566544 459999
Q ss_pred EecccccccccCHH---HHHHHHHhcccCCeEEEEEeCCCC
Q 005959 322 HCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 322 ~~s~~ll~~~~d~~---~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+|++.+++...... ..-.-+.+..++||++++......
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99998666542221 233446778999999999987654
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=80.81 E-value=1.4 Score=40.48 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=25.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEAS 287 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S 287 (667)
......|||||.|.+.-.|.+.|+.. .|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G---~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPG---WGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCc---cccccc
Confidence 45679999999999999999988765 566653
|
; GO: 0008168 methyltransferase activity |
| >cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator | Back alignment and domain information |
|---|
Probab=80.54 E-value=0.065 Score=48.30 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=40.2
Q ss_pred ccccccchhhHhHHHHhhhhhccCCCCcCCcccCccCCCCccccCCchhhhhcccccccccccCCCC
Q 005959 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQ 161 (667)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~~~~~~~pC~d~~~~~~~~~~~~~~~er~c~~ 161 (667)
.+|||.|++.++.++..|+.+..-|. +++++.. |++......+..++.+++++.+..
T Consensus 33 ~~g~R~Y~~~~l~~l~~I~~l~~~G~---~l~ei~~-------~l~~~~~~~~l~~~~~~l~~~i~~ 89 (102)
T cd04789 33 ANGYRLYPDSDLQRLLLIQQLQAGGL---SLKECLA-------CLQGKLTRSLLLERLSSLAEQIAR 89 (102)
T ss_pred CCCCeeCCHHHHHHHHHHHHHHHCCC---CHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999988778 6666665 443333334445565666655544
|
Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.40 E-value=2.7 Score=48.61 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=60.2
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc---------cc----ccc-ccccccCCCCCCCcc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---------GF----VGV-LHDWCEAFPTYPRTY 580 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R---------Gl----ig~-~~~~c~~f~typ~ty 580 (667)
-++|||+|||.|+.+..+++. .++= .|+-+|-. .-+..+-+. ++ +-+ ..|=-+-....+++|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~-~~v~--~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY-PDVE--QVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCcC--eEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 468999999999999888762 2221 12222221 122222110 00 001 111111122345789
Q ss_pred ccccccCccccccCCCCCCCc--chhheeccccccCCcEEEEEc-----CHHHHHHHHHHHhhCCCe
Q 005959 581 DLVHAEGLLSLESGHRHRCST--LDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWD 640 (667)
Q Consensus 581 Dl~H~~~~~~~~~~~~~~c~~--~~~l~E~dRiLRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~ 640 (667)
|+|-++- .+.... ....+ ..++-++-|+|+|||.+++.. ..+...++.+..++....
T Consensus 375 DvIi~D~-~~~~~~--~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 375 DVIIVDL-PDPSNP--ALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred CEEEEeC-CCCCCc--chhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 9998862 222210 00000 134556789999999999953 244455555555555343
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=80.27 E-value=1.7 Score=46.24 Aligned_cols=133 Identities=13% Similarity=0.102 Sum_probs=69.0
Q ss_pred ceeEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhccccc---c-cccccccCCCCC-----CCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFV---G-VLHDWCEAFPTY-----PRTYDL 582 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~RGli---g-~~~~~c~~f~ty-----p~tyDl 582 (667)
+-++||++|+++|..+.+|... +-.|.++=.-|....-.-..+-+-|+- = +..|-.+-++.+ ..+||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 3679999999999999888752 112333333221111111122223431 0 011222222222 357999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC------------HHHHHHHHH----HHhhCCCeeEEeee
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARA----LTTRLKWDARVIEI 646 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~~----~~~~~~W~~~~~~~ 646 (667)
|..+.==. ....++-+.=++|||||.+|+-+. ......+++ ++..=+++..+.-.
T Consensus 198 VFIDa~K~---------~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 198 AFVDADKR---------MYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred EEECCCHH---------HHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 88754322 233555555689999999987311 111223443 44444576665532
Q ss_pred ccCCCccEEEEEcc
Q 005959 647 ESNSDERLLICQKP 660 (667)
Q Consensus 647 ~~~~~~~~li~~K~ 660 (667)
.++++|++|.
T Consensus 269 ----gDGl~i~~K~ 278 (278)
T PLN02476 269 ----GDGMTICRKR 278 (278)
T ss_pred ----CCeeEEEEEC
Confidence 3678888774
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=80.07 E-value=7 Score=37.16 Aligned_cols=69 Identities=16% Similarity=0.039 Sum_probs=47.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEE--eecccCCCCCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG--SFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~--~~da~~Lpfpd~sFDlV~~ 323 (667)
..++|+|||++.|..+.+++-+|. ..|++++.++...+..++.-....+. ......++-.-+.||+...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 458999999999999999998874 46899999999988887631111111 0112234434456887764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 667 | |||
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 5e-09 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 1e-08 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 4e-08 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 5e-08 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 1e-07 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 4e-07 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 1e-06 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 2e-06 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 3e-06 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 3e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 5e-06 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 5e-06 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 6e-06 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 6e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 1e-05 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 1e-05 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 1e-05 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 2e-05 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 2e-05 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 2e-05 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 2e-05 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 3e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 4e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 6e-05 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 6e-05 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 7e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 8e-05 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 1e-04 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 1e-04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 1e-04 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 2e-04 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 2e-04 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 2e-04 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 2e-04 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 3e-04 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 3e-04 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 4e-04 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 7e-04 |
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 5e-09
Identities = 32/176 (18%), Positives = 53/176 (30%), Gaps = 41/176 (23%)
Query: 215 EEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK 274
+S A+ + + ++ ++ +R +G R +LD+GCG G L
Sbjct: 37 GADVSVDDAT------DRLTDEMIALLDVR-------SGDR-VLDVGCGIGKPAVRL--- 79
Query: 275 ELLTMCIANYEA-------SGSQV----QLTLERGLPAMI----GSFASKQLPYPSLSFD 319
+ S QV GL + LP+ SFD
Sbjct: 80 ------ATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM--DLPFEDASFD 131
Query: 320 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNF 375
+ + L E+ RVL+PGG + KE +
Sbjct: 132 AVWALESLHHMPDRGR-ALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRA 186
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 1e-08
Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 25/132 (18%)
Query: 257 ILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGS 305
+LD+ CG G F L S++++ A A + + G A
Sbjct: 42 VLDLACGVGGFSFLLEDYGFEVVGVDISEDMIR--KAREYAKSRESNVEFIVG-DAR--- 95
Query: 306 FASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFV---WTSPLTNPQ 361
+L + +FD + V ++ + + EV RVLKP G F+ P+
Sbjct: 96 ----KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR 151
Query: 362 AFLRNKENQKRW 373
QK W
Sbjct: 152 LKESLVVGQKYW 163
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 4e-08
Identities = 27/115 (23%), Positives = 38/115 (33%), Gaps = 34/115 (29%)
Query: 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV--------------QLTLERGLPA 301
I DIGCG G TM +A QV + + GL
Sbjct: 49 LIADIGCGTGG----------QTMVLA--GHVTGQVTGLDFLSGFIDIFNRNARQSGLQN 96
Query: 302 MI----GSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 352
+ GS LP+ + D++ + + G L E + LK GGY
Sbjct: 97 RVTGIVGSMD--DLPFRNEELDLIWSEGAIYNIGFERG--LNEWRKYLKKGGYLA 147
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 5e-08
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 23/127 (18%)
Query: 255 RTILDIGCGYGSFGAHLF------------SKELLTMCIANYEASGSQVQLTLERGLPAM 302
+T+LD G G +F S L + ++ +
Sbjct: 25 KTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNI--------S 76
Query: 303 IGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL-EVDRVLKPGGYFVWTSPLTNPQ 361
G +LP+ S ++ + D + E+ RVLKPGG T +
Sbjct: 77 KGDIR--KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDE 134
Query: 362 AFLRNKE 368
+ + ++
Sbjct: 135 RYNKGEK 141
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 41/163 (25%)
Query: 212 MLEEEQISFRSASLIFD---------GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGC 262
M E ++ + + D + I G+ T +DIG
Sbjct: 2 MSENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAG---------TCIDIGS 52
Query: 263 GYGSFGAHL------------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ 310
G G+ L FSK + + + N + ++ + +G
Sbjct: 53 GPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQG-DVH-------N 104
Query: 311 LPYPSLSFDMLHCARCGV-DWDQKDGILLLEVDRVLKPGGYFV 352
+P D++ R V W+ E+ R+LK GG
Sbjct: 105 IPIEDNYADLIVS-RGSVFFWEDVAT-AFREIYRILKSGGKTY 145
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 22/109 (20%)
Query: 256 TILDIGCGYGS--------FGAHL----FSKELLTMCIANYEASGSQVQLTLERGLPAMI 303
I DIGCG G + + + + N + ++ G
Sbjct: 49 KIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITG-SMD- 106
Query: 304 GSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 352
LP+ + D++ + + G + E + LK GG+
Sbjct: 107 ------NLPFQNEELDLIWSEGAIYNIGFERG--MNEWSKYLKKGGFIA 147
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 1e-06
Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 26/158 (16%)
Query: 239 EMIGLRNESNFI--------LAGVRTILDIGCGYGSFGAHL------------FSKELLT 278
+ I +RN +NFI ++LD+GCG G ++ +
Sbjct: 42 KTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIN 101
Query: 279 MCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILL 338
+ ++ K+ S F + + I
Sbjct: 102 DARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYA----FSTSESLDIAQ 157
Query: 339 LEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFV 376
+ R L+PGGYF+ T P + L + + N
Sbjct: 158 RNIARHLRPGGYFIMTVP--SRDVILERYKQGRMSNDF 193
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 24/108 (22%)
Query: 256 TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 304
+LD+GCG G L S+ ++ E L+ +G
Sbjct: 56 EVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPD----LSFIKG-DLS-- 108
Query: 305 SFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 352
LP+ + F+ + ++ L E+ RVLK GY
Sbjct: 109 -----SLPFENEQFEAIMAINSLEWTEEPLRALN-EIKRVLKSDGYAC 150
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 3e-06
Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 38/115 (33%)
Query: 256 TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 304
ILD+G G G + HL + L+ + + + G
Sbjct: 44 VILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHP------------SVTFHHG 91
Query: 305 SFASKQLPYPSLSFD-------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 352
+ L + ++H + D L+ + ++ GG +
Sbjct: 92 TIT--DLSDSPKRWAGLLAWYSLIHMGP----GELPD--ALVALRMAVEDGGGLL 138
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 32/158 (20%)
Query: 212 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGV---RTILDIGCGYGSFG 268
M ++++ + + + + + + A + E+ I A ILD GCG G G
Sbjct: 2 MTTWKELTDNNPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIG 61
Query: 269 AHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLS 317
+L L+ ++ ++G +
Sbjct: 62 GYLSKQGHDVLGTDLDPILIDYAKQDFP------------EARWVVGDLSV--DQISETD 107
Query: 318 FDMLHCARCGVDW---DQKDGILLLEVDRVLKPGGYFV 352
FD++ + V + L + R L G V
Sbjct: 108 FDLI-VSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 14/122 (11%)
Query: 248 NFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFA 307
I + +LDIGC G+ GA + I EA + E+ ++G
Sbjct: 27 KHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGI---EAFPEAAEQAKEKLDHVVLGDIE 83
Query: 308 SKQLPYPSLSFDMLHCARCGVDWD----QKD-GILLLEVDRVLKPGGYFVWTSPLTNPQA 362
+ +PY FD + D D ++ +V +K G + + P + +
Sbjct: 84 TMDMPYEEEQFDCVIF------GDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHIS 137
Query: 363 FL 364
L
Sbjct: 138 VL 139
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 23/110 (20%)
Query: 256 TILDIGCGYGSFGAHL-------------FSKELLTMCIANYEASGSQVQLTLERGLPAM 302
+L+ GCG G+ L S E L N E +G + + +
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQA-NIF 97
Query: 303 IGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 352
LP+ SFD + + L + +VLKPGG
Sbjct: 98 -------SLPFEDSSFDHIFVCFVLEHLQSPEEA-LKSLKKVLKPGGTIT 139
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 34/161 (21%)
Query: 255 RTILDIGCGYGSFGAHL------------FSKELLTMCIANYEASGSQ-VQLTLERGLPA 301
I+D+GCG+G F S+++L A +G + L++
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDK---- 100
Query: 302 MIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV--WTSPLTN 359
L P SFD+ + + + L V + L PGG+FV P+
Sbjct: 101 ---------LHLPQDSFDLAYSSLALHYVEDVAR-LFRTVHQALSPGGHFVFSTEHPIYM 150
Query: 360 P---QAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVW 397
+ + E ++ W R VE + VV
Sbjct: 151 APARPGWAIDAEGRRTWPIDRYLVEG--PRKTDWLAKGVVK 189
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 6e-06
Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 28/158 (17%)
Query: 231 EDYSHQIAEMIG--LRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG 288
E+ E++ LR + R +LDIGCG G F + + ++ + + +
Sbjct: 18 EEKFRGSRELVKARLRRYIPYFKGC-RRVLDIGCGRGEFLELCKEEGIESIGV---DINE 73
Query: 289 SQVQLTLERGLPAMIGSFASKQLPYPSLSFDML-------HCARCGVDWDQKDGILLLEV 341
++ E + P D + H ++ LL
Sbjct: 74 DMIKF-CEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL------DPERLFELLSLC 126
Query: 342 DRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDF 379
+K Y V SP NP + NF D
Sbjct: 127 YSKMKYSSYIVIESP--NPTSLY------SLINFYIDP 156
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPY 313
I DIG G G + L ++ L + E S Q + + G + L
Sbjct: 36 SVIADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQAVVHPQVEWFTGYAEN--LAL 90
Query: 314 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRW 373
P S D + + + E+ R+++ G + T + Q W
Sbjct: 91 PDKSVDGVISILAIHHFSHLEKSFQ-EMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLW 149
Query: 374 NFVRDFV 380
F+
Sbjct: 150 EDALRFL 156
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 27/192 (14%), Positives = 63/192 (32%), Gaps = 30/192 (15%)
Query: 225 LIFDGVEDYSHQIAEMIGLRNESNFI---LAGVRTILDIGCGYGSFGAHL---------- 271
+ ++ ++ + + ++ + + I DIGCG G+ L
Sbjct: 2 MAYEQFAYVYDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVD 61
Query: 272 FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFD---MLHCARCGV 328
S+E+L + + V + +LP P D +L + +
Sbjct: 62 LSEEMLEIAQEKAMETNRHVDFWV--------QDMRELELPEP---VDAITILCDSLNYL 110
Query: 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 388
+ R+L GG ++ + +P + N K + + + +
Sbjct: 111 QTEADVKQTFDSAARLLTDGGKLLFD--VHSP-YKMETLFNGKTYATHAEQSSYIWFADP 167
Query: 389 SQQDETVVWKKT 400
++ +VV + T
Sbjct: 168 GEEPLSVVHELT 179
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 31/168 (18%)
Query: 225 LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL-----------FS 273
+ DY +I E+N LD+ CG G+ +L S
Sbjct: 12 KLIRADVDYKKWSDFIIEKCVENN---LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLS 68
Query: 274 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV---DW 330
+E+L+ + + G + +L ++ + FD++ C
Sbjct: 69 QEMLSEAENKFRSQGLKPRLAC--------QDISNLNINRK---FDLITCCLDSTNYIID 117
Query: 331 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRD 378
V LK GG F++ + + + N +N+ D
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIFD--INSYYKLSQVLGNN-DFNYDDD 162
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 26/162 (16%), Positives = 46/162 (28%), Gaps = 33/162 (20%)
Query: 216 EQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL---- 271
++++ S E+ S + R +L+ GCG+G A
Sbjct: 12 DRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQTR-VLEAGCGHGPDAARFGPQA 70
Query: 272 -------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLS-FDMLHC 323
FS ELL + AN + LP + F ++
Sbjct: 71 ARWAAYDFSPELLKLARANAPHADVYEWNGKGE-------------LPAGLGAPFGLIVS 117
Query: 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 365
R +L + + P +F++ P N
Sbjct: 118 RRGPTSV-------ILRLPELAAPDAHFLYVGPRLNVPEVPE 152
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 47/158 (29%)
Query: 226 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGS--------FGAHLFSKELL 277
I + +A + + + + LD+G GYG FG +
Sbjct: 59 IREASLRTDEWLASELAMTGV---LQRQAK-GLDLGAGYGGAARFLVRKFGVSI------ 108
Query: 278 TMCIANYEASGSQV----QLTLERGLPAMI----GSFASKQLPYPSLSFD-------MLH 322
C+ + Q + + GL I GSF ++P S+D LH
Sbjct: 109 -DCLNI---APVQNKRNEEYNNQAGLADNITVKYGSFL--EIPCEDNSYDFIWSQDAFLH 162
Query: 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360
D + + E RVLKP G T P+
Sbjct: 163 SP----DKLK----VFQECARVLKPRGVMAITDPMKED 192
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 42/276 (15%), Positives = 77/276 (27%), Gaps = 45/276 (16%)
Query: 225 LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL-----------FS 273
I D + A ++GL + G +LD+ CG G L S
Sbjct: 34 YIGDTRSRTAEYKAWLLGLLRQ-----HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDAS 88
Query: 274 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV----- 328
++L A E + + ++ + + FD + C
Sbjct: 89 DKMLK--YALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPD 146
Query: 329 -DWDQKDGILLL-EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 386
DQ + L L + +++PGG V N L N + ++ +
Sbjct: 147 SKGDQSEHRLALKNIASMVRPGGLLVID--HRNYDYILSTGCAPPGKNI---YYKSDLTK 201
Query: 387 LVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIP 446
++ TV K Y+ + PG+G + Y
Sbjct: 202 DITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSY--------------YPHC 247
Query: 447 IEERRNWPSRANLNKNELAVYG-VHPEEFAEDTENW 481
+ A + + +V G P +
Sbjct: 248 LASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPC 283
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 25/161 (15%)
Query: 219 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGV-RTILDIGCGYGSFGAHL------ 271
+ A+ +D + + ++A I S G L++G G G L
Sbjct: 4 ALLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYR 63
Query: 272 -----FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 326
+L + +VQ+ +P P S +
Sbjct: 64 YIALDADAAMLEVFRQKIAGVDRKVQVVQ--------ADAR--AIPLPDESVHGVIVVH- 112
Query: 327 GVDWDQKDGILLLEVDRVLKPGGYFV--WTSPLTNPQAFLR 365
+L E RVLKPGG + W +P+ L+
Sbjct: 113 LWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQ 153
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 244 RNESNFILAGVR---TILDIGCGYGSFGAHLFSKELLTMCIANYEASG---SQVQLTL-- 295
R +F+ ++ +LD+G G G + + + +E S+ L +
Sbjct: 42 RLIGSFLEEYLKNPCRVLDLGGGTGKW-SLFLQE-------RGFEVVLVDPSKEMLEVAR 93
Query: 296 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV-----DWDQKDGILLLEVDRVLKPGGY 350
E+G+ ++ + A LP+PS +F+ + A V + D+ E+ RVL P G
Sbjct: 94 EKGVKNVVEAKAED-LPFPSGAFEAV-LALGDVLSYVENKDK----AFSEIRRVLVPDGL 147
Query: 351 FVWTSPLTNPQAFLRNKENQKRWNFVRDFVE 381
+ T N FL+ + W+ + F++
Sbjct: 148 LIATVD--NFYTFLQQMIEKDAWDQITRFLK 176
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYP 314
IL++GCG G + + + S R G P F QL
Sbjct: 46 KILELGCGAGYQAEAMLAAGFDVDAT---DGSPELAAEASRRLGRPVRTMLFH--QLDAI 100
Query: 315 SLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFV 352
++D + C + + + +L + R LKPGG F
Sbjct: 101 D-AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFY 138
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 46/341 (13%), Positives = 94/341 (27%), Gaps = 111/341 (32%)
Query: 375 FVRDFVENL-CWELVSQQDET-VVWKKTSKASCYSSRKPGSGP-----SICSKGNDVESP 427
F FV+N C ++ QD + K S+ SG ++ SK ++
Sbjct: 25 FEDAFVDNFDCKDV---QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--- 78
Query: 428 YYR----PLQPCIGGTRNRRWI--PIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENW 481
+ L+ N +++ PI+ + PS T +
Sbjct: 79 VQKFVEEVLRI------NYKFLMSPIKTEQRQPSM--------------------MTRMY 112
Query: 482 KTAVGNFWSLLSPLIFSDHP-KRPGDEDPSPPYNMVRNVLD------------MNAHFGG 528
++ +F+ + R PY +R L + G
Sbjct: 113 IEQRDRLYN--DNQVFAKYNVSRL------QPYLKLRQALLELRPAKNVLIDGV----LG 160
Query: 529 FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGL 588
GK+ ++V + + + + W ++ E L
Sbjct: 161 S-------GKTWVALDVCLSYK------VQCKMDFKIF--WLN-LKNCNSPETVL--EML 202
Query: 589 LSL------------ESGHRHRCSTLDIFTEIDRILR----PEGWVIIRD--TARLIE-- 628
L + + I E+ R+L+ +++ + A+
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 629 --SARAL-TTRLKWDARVIEIESNSDERLLICQKPFFKRQA 666
S + L TTR K + + + L +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 6e-05
Identities = 14/102 (13%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK--QLP 312
+T+LD+GCG+G + E + + S + + ++ +
Sbjct: 46 KTVLDLGCGFGWHCIYA--AEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIA 103
Query: 313 YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 354
+++++ + + + + +V LK G F+++
Sbjct: 104 IEPDAYNVV-LSSLALHYIASFDDICKKVYINLKSSGSFIFS 144
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 315
++IG G G F L K + + E S ++ +RG+ + G+ + LP
Sbjct: 50 RGVEIGVGTGRFAVPLKIK----IGV---EPSERMAEIARKRGVFVLKGTA--ENLPLKD 100
Query: 316 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNF 375
SFD + + L E R+LK GGY + ++N+++ F
Sbjct: 101 ESFDFALM-VTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVF 159
Query: 376 VRD 378
++
Sbjct: 160 YKN 162
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 32/158 (20%)
Query: 243 LRNESNFILAGVRTILDIGCGYGSFGAHL--------------FSKELLTMCIANYEASG 288
L N I V I+D GCGYG G L + LL +
Sbjct: 13 LVNTVWKITKPVH-IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP 71
Query: 289 SQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPG 348
+ + G ++ +D+ C + +L ++ +K G
Sbjct: 72 YDSEF--------LEGDAT--EIELND-KYDIAIC-HAFLLHMTTPETMLQKMIHSVKKG 119
Query: 349 GYFV-----WTSPLTNPQAFLRNKENQKRWNFVRDFVE 381
G + W S + + + + ++ E
Sbjct: 120 GKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFE 157
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 8e-05
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 41/114 (35%)
Query: 256 TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 304
I+D GCG G + +L + L ++ ++I
Sbjct: 20 VIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKE---------------VKEKFDSVIT 64
Query: 305 SFASKQLPYPSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 352
S P S D H D D K ++ EV R+LK G +
Sbjct: 65 L--SDPKEIPDNSVDFILFANSFH------DMDDKQH-VISEVKRILKDDGRVI 109
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 34/160 (21%)
Query: 226 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYE 285
I G + + +I I L S +LDIG G G ++ Y
Sbjct: 36 ISSGGLEATKKILSDIELNENS--------KVLDIGSGLGGGCMYI---------NEKYG 78
Query: 286 A-------SGSQVQLTLER-GLPAMI----GSFASKQLPYPSLSFDMLHC--ARCGVDWD 331
A + V + ER I +P +FD+++ A + +
Sbjct: 79 AHTHGIDICSNIVNMANERVSGNNKIIFEANDIL--TKEFPENNFDLIYSRDAILALSLE 136
Query: 332 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQK 371
K+ L + + LKP G + T + ++ +
Sbjct: 137 NKNK-LFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEY 175
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 6/119 (5%)
Query: 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---QL 311
LD G G G +L +K T + E ++ +G F
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDL--LEPVKHMLEEAKRELAGMPVGKFILASMETA 152
Query: 312 PYPSLSFDMLHCARCGVDWDQKDGILLL-EVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 369
P ++D++ + D + + L P GY + + FL +KE+
Sbjct: 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKED 211
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 18/152 (11%)
Query: 216 EQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE 275
E + R A L + I + R + +LDIGCG G +
Sbjct: 53 EMMQARRAFLDAGHYQPLRDAIVAQLRER-----LDDKATAVLDIGCGEGYYTHAFADAL 107
Query: 276 LLTMCIANYEASGSQVQLTLER--GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
+ S ++ +R + + S +LP+ S D + + K
Sbjct: 108 PEITTFG-LDVSKVAIKAAAKRYPQVTFCVASSH--RLPFSDTSMDAIIR----IYAPCK 160
Query: 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 365
E+ RV+KPGG+ + +P L+
Sbjct: 161 ----AEELARVVKPGGWVITATPGPRHLMELK 188
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 34/189 (17%), Positives = 59/189 (31%), Gaps = 49/189 (25%)
Query: 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP 312
+ D GCG A + +A+ + + + Q+P
Sbjct: 67 ASLVVADFGCGDCRL-ASSIRNPVHCFDLASLDPRVTVCDMA---------------QVP 110
Query: 313 YPSLSFDMLHC--ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ 370
S D+ + G + L E +RVLKPGG E
Sbjct: 111 LEDESVDVAVFCLSLMGTNIRD----FLEEANRVLKPGGLLKVA-------------EVS 153
Query: 371 KRWNFVRDFVENLC---WELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESP 427
R+ VR F+ + +++VS+ + + +K GP + +
Sbjct: 154 SRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFL------FDFQKT--GPPLVGPKAQLSGL 205
Query: 428 YYRPLQPCI 436
LQPC+
Sbjct: 206 ---QLQPCL 211
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 30/148 (20%)
Query: 251 LAGVR---TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLE 296
A R +LDIG G G +KE++ + + + G + + +
Sbjct: 16 TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE-NVRFQ 74
Query: 297 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGV-DWDQKDGILLLEVDRVLKPGGYFV--- 352
+G A LP+P SFD++ C R + + EV RVLK G F+
Sbjct: 75 QG-TAE-------SLPFPDDSFDIITC-RYAAHHFSDVRKAVR-EVARVLKQDGRFLLVD 124
Query: 353 -WTSPLTNPQAFLRNKENQKRWNFVRDF 379
+ F+ + + + VR+
Sbjct: 125 HYAPEDPVLDEFVNHLNRLRDPSHVRES 152
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 25/113 (22%)
Query: 256 TILDIGCGYGSFGAHL--------------FSKELLTMCIANYEASGSQVQLTLERGLPA 301
+ + CG+ S L + E L Q+TL R A
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ-DA 179
Query: 302 MIGSFASKQLPYPSLSFDMLHCARCG--VDWDQKDGILLLEVDRVLKPGGYFV 352
+L +D+L D + L + LKPGG V
Sbjct: 180 W-------KLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 22/156 (14%), Positives = 41/156 (26%), Gaps = 36/156 (23%)
Query: 255 RTILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMI 303
+L+ G G G+ L S+E+ +
Sbjct: 47 GNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPK-----------EFSITE 95
Query: 304 GSFASKQLPYPSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357
G F S P+ S D H D + + + + ++L GG V+ +
Sbjct: 96 GDFLS--FEVPT-SIDTIVSTYAFHHLT-----DDEKNVAIAKYSQLLNKGGKIVFADTI 147
Query: 358 TNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDE 393
Q + +L E ++
Sbjct: 148 FADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPV 183
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 30/175 (17%)
Query: 225 LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL-----------FS 273
+ +E +I + + E VR +LD+ CG G L
Sbjct: 15 IYRRRIERVKAEIDFVEEIFKEDA--KREVRRVLDLACGTGIPTLELAERGYEVVGLDLH 72
Query: 274 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD-WDQ 332
+E+L + + +++ + ++ + + FD + + +D+
Sbjct: 73 EEMLRVARRKAKERNLKIEFLQGD----V------LEIAFKN-EFDAVTMFFSTIMYFDE 121
Query: 333 KDGILLL-EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 386
+D L +V LKPGG F+ P F ++ WN + + + +
Sbjct: 122 EDLRKLFSKVAEALKPGGVFI----TDFPCWFYGGRDGPVVWNEQKGEEKLVIMD 172
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 34/147 (23%)
Query: 229 GVEDYSHQIAEM--------IGLRNESNFILAGVR---TILDIGCGYGSFGAHL------ 271
G + H M G +A ++ +LD+ G G
Sbjct: 2 GSDKIHHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK 61
Query: 272 -----FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 326
++++L + A E +G Q Q+ +G A Q+P+ F ++ C R
Sbjct: 62 VVAFDLTEDILKVARAFIEGNGHQ-QVEYVQG-DAE-------QMPFTDERFHIVTC-RI 111
Query: 327 GV-DWDQKDGILLLEVDRVLKPGGYFV 352
+ + E RVLK GG +
Sbjct: 112 AAHHFPNPASFVS-EAYRVLKKGGQLL 137
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 21/150 (14%), Positives = 39/150 (26%), Gaps = 38/150 (25%)
Query: 255 RTILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMI 303
+LD+GCG G L + L+ A
Sbjct: 54 ERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQ-------- 105
Query: 304 GSFASKQLPYPSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV--WTS 355
++ +D L D + LL + +L PGG V
Sbjct: 106 ---LAEAKVPVGKDYDLICANFALL----HQDIIE----LLSAMRTLLVPGGALVIQTLH 154
Query: 356 PLTNPQAFLRNKENQKRWNFVRDFVENLCW 385
P + ++ ++ + + + W
Sbjct: 155 PWSVADGDYQDGWREESFAGFAGDWQPMPW 184
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 7e-04
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 19/128 (14%)
Query: 250 ILAGVRTILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERG 298
+ ++D CG G+ L SK L IA E + + + L G
Sbjct: 53 LFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALE--IAAKENTAANISYRLLDG 110
Query: 299 L-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357
L P S+ H + ++++ L + +L G
Sbjct: 111 LVPEQAAQIHSEIGDANIYMRTGFHH----IPVEKREL-LGQSLRILLGKQGAMYLIELG 165
Query: 358 TNPQAFLR 365
T F
Sbjct: 166 TGCIDFFN 173
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 667 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.67 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.59 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.57 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.56 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.55 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.54 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.54 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.54 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.53 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.53 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.52 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.51 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.51 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.51 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.51 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.5 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.5 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.5 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.49 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.49 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.49 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.49 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.48 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.48 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.48 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.47 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.47 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.47 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.47 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.47 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.47 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.47 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.46 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.46 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.46 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.45 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.45 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.45 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.45 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.45 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.44 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.43 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.43 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.43 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.43 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.43 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.42 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.42 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.42 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.42 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.42 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.42 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.42 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.42 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.41 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.41 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.41 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.4 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.39 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.39 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.39 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.39 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.38 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.38 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.37 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.37 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.36 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.36 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.36 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.35 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.34 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.34 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.33 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.33 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.33 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.33 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.33 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.33 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.32 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.32 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.31 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.31 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.3 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.29 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.28 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.28 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.28 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.27 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.27 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.27 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.26 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.25 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.25 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.25 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.24 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.24 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.23 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.23 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.23 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.22 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.22 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.22 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.21 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.21 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.2 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.2 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.19 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.19 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.19 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.19 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.18 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.17 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.17 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.17 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.16 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.16 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.15 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.15 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.15 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.15 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.15 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.15 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.14 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.14 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.14 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.13 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.13 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.12 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.12 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.12 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.12 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.12 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.12 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.11 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.11 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.11 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.11 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.11 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.11 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.1 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.1 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.09 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.09 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.09 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.09 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.09 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.09 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.08 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.08 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.08 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.07 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.07 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.07 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.07 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.06 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.06 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.05 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.05 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.05 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.05 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.04 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.03 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.02 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.02 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.02 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.02 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.02 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.02 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.02 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.01 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.01 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.01 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.0 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.0 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.0 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.99 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.99 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.98 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.98 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.98 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.98 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.97 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.97 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.97 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.96 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.96 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.96 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.95 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.94 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.93 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.92 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.9 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.9 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.9 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.89 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.89 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.89 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.89 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.89 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.89 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.88 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.88 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.88 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.87 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.87 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.87 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.87 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.86 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.86 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.85 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.85 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.82 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.81 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.81 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.81 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.81 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.79 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.79 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.79 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.78 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.78 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.77 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.77 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.76 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.75 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.73 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.72 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.68 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.68 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.67 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.62 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.61 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.61 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.61 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.6 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.6 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.58 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.58 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.55 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.55 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.55 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.54 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.53 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.52 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.51 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.49 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.45 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.45 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.4 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.31 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.3 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.3 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.27 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.27 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.23 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.23 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.21 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.21 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.2 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.18 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.17 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.16 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.15 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.15 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.15 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.15 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.14 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.13 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.13 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.13 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.11 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.1 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.09 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.08 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.08 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.07 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.06 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.06 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.05 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.05 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.04 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.02 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.02 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.02 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.01 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.0 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 97.99 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 97.99 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 97.99 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 97.99 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 97.98 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 97.98 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 97.98 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.98 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 97.97 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 97.96 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.96 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 97.96 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 97.95 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 97.95 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 97.95 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.93 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 97.92 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 97.92 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 97.92 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 97.91 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 97.9 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 97.9 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 97.89 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 97.89 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 97.89 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 97.89 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 97.88 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 97.88 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 97.87 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 97.87 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 97.87 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 97.87 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 97.87 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 97.86 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 97.86 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 97.86 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.86 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 97.85 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 97.85 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.84 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 97.83 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 97.83 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 97.82 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.82 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 97.81 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 97.81 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 97.81 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 97.78 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 97.78 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 97.78 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 97.76 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 97.76 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 97.76 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 97.75 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.75 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 97.75 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 97.74 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 97.74 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 97.72 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 97.72 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 97.71 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 97.71 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.71 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 97.71 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.7 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 97.69 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.69 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.69 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 97.69 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.68 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 97.67 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 97.67 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 97.66 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 97.65 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 97.65 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 97.65 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 97.65 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 97.64 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 97.64 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 97.64 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.63 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 97.6 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 97.59 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 97.59 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 97.57 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 97.56 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 97.55 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.54 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 97.54 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 97.53 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 97.52 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 97.52 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 97.51 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.51 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 97.51 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.5 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 97.5 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 97.49 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 97.48 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 97.47 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 97.47 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 97.46 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 97.46 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 97.46 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 97.46 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 97.46 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 97.45 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 97.45 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 97.45 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 97.45 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 97.44 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.44 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.43 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.43 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 97.43 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.42 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 97.41 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.41 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 97.41 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 97.4 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.39 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.39 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 97.38 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 97.37 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 97.37 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 97.37 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.35 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 97.35 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 97.3 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 97.29 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 97.28 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.28 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 97.28 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 97.26 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 97.25 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 97.25 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 97.24 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 97.22 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.22 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 97.21 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 97.2 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 97.2 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 97.2 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.19 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 97.18 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 97.18 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 97.17 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 97.17 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.16 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 97.15 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 97.15 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.12 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 97.12 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 97.11 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 97.1 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 97.07 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 97.07 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 97.07 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 97.07 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 97.06 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 97.06 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.05 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 97.03 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 96.99 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.97 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 96.93 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 96.92 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 96.9 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 96.89 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 96.88 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 96.87 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.87 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.86 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.82 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 96.82 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 96.77 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 96.77 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 96.77 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 96.74 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.7 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 96.66 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 96.65 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 96.64 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 96.61 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 96.6 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 96.59 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 96.54 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 96.54 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 96.51 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.51 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 96.49 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 96.45 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 96.4 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 96.38 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 96.37 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 96.36 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 96.33 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 96.25 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.19 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 96.19 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 96.17 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 96.12 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.1 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 96.09 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 96.0 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 95.97 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 95.97 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 95.96 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.96 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 95.94 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.67 E-value=8e-17 Score=165.67 Aligned_cols=128 Identities=18% Similarity=0.254 Sum_probs=95.6
Q ss_pred ccccccccccch-hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005959 219 SFRSASLIFDGV-EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (667)
Q Consensus 219 ~F~~~~~~yd~~-~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er 297 (667)
.|.+.+..|+.. ..|...+.+.+....+ ...+|||||||+|.++..|++++ ..|+++|+|+.|++.|+++
T Consensus 10 ~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~------~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~~ 80 (257)
T 4hg2_A 10 HFTPVADAYRAFRPRYPRALFRWLGEVAP------ARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALRH 80 (257)
T ss_dssp ----------CCCCCCCHHHHHHHHHHSS------CSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhcC------CCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhhc
Confidence 466666677543 4455555555543222 34689999999999999999885 4689999999999988653
Q ss_pred CCCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 298 GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 298 gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.++.+.+++++.+|+++++||+|+|..+ +||. +.+++++|+.|+|||||.|++.....
T Consensus 81 -~~v~~~~~~~e~~~~~~~sfD~v~~~~~-~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 81 -PRVTYAVAPAEDTGLPPASVDVAIAAQA-MHWF-DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp -TTEEEEECCTTCCCCCSSCEEEEEECSC-CTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred -CCceeehhhhhhhcccCCcccEEEEeee-hhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 4678889999999999999999999988 6776 46789999999999999999987654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=140.92 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=88.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
..+|||||||+|.++..+++.+ ..++++|+++.+++.++++.. ++.+..+++..++++ ++||+|+|..+ +++.+
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~-l~~~~ 120 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYA-FHHLT 120 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESC-GGGSC
T ss_pred CCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcc-hhcCC
Confidence 3799999999999999999884 468999999999999988765 677888899999988 89999999988 55556
Q ss_pred CHHH--HHHHHHhcccCCeEEEEEeCCCCh
Q 005959 333 KDGI--LLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 333 d~~~--~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+... +|+++.++|||||++++.++....
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 150 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNKGGKIVFADTIFAD 150 (220)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECBSS
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeccccC
Confidence 6655 999999999999999999876543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.7e-15 Score=147.84 Aligned_cols=112 Identities=15% Similarity=0.269 Sum_probs=92.7
Q ss_pred HHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeeccc
Q 005959 235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASK 309 (667)
Q Consensus 235 ~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~ 309 (667)
+.+.+.+...+ ..+|||||||+|.++..+++.+. .++++|+|+.|++.|+++ ++ ++.+..+|+.
T Consensus 27 ~~l~~~l~~~~--------~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~ 95 (260)
T 1vl5_A 27 AKLMQIAALKG--------NEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE 95 (260)
T ss_dssp HHHHHHHTCCS--------CCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-
T ss_pred HHHHHHhCCCC--------CCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHH
Confidence 44555555433 47999999999999999998852 799999999999988765 33 4678889999
Q ss_pred CCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 310 QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 310 ~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+|+++++||+|+|..+ +++.+++..+|.++.|+|||||+|++.++..
T Consensus 96 ~l~~~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (260)
T 1vl5_A 96 QMPFTDERFHIVTCRIA-AHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 143 (260)
T ss_dssp CCCSCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred hCCCCCCCEEEEEEhhh-hHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence 99999999999999988 5566788899999999999999999987643
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-15 Score=145.05 Aligned_cols=99 Identities=9% Similarity=-0.065 Sum_probs=81.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----------------CCCceEEeecccCCCCCC-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------------GLPAMIGSFASKQLPYPS- 315 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-----------------gl~~~~~~~da~~Lpfpd- 315 (667)
..+|||+|||+|.++..|+++|. .|+|+|+|+.|++.|+++ ..++.+.++|+..+++++
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 47999999999999999999864 699999999999999876 235778899999999876
Q ss_pred CCccEEEeccccccccc-CHHHHHHHHHhcccCCeEEEEEe
Q 005959 316 LSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~~-d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
++||+|++..+++++.+ +...+++++.|+|||||++++..
T Consensus 100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 89999999877554432 23569999999999999844443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=141.93 Aligned_cols=135 Identities=19% Similarity=0.107 Sum_probs=102.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..+++.+.....++++|.++.+++.++++ ++ ++.+..+++..+++++++||+|++..+ +
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l 116 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFT-F 116 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESC-G
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehh-h
Confidence 37999999999999999998853346799999999999888765 33 477888899999999999999999988 5
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEee
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~ 389 (667)
++.++...+++++.++|||||++++.++................-..+..+.+..+|+.+.
T Consensus 117 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 177 (219)
T 3dh0_A 117 HELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGR 177 (219)
T ss_dssp GGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEE
T ss_pred hhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEE
Confidence 5557888999999999999999999986543311111111111234556666777777654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=147.43 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=85.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC-CceeEEEEecCCHHHHHHHHHc----C--CCceEEeecccCCCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g-~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
++.+|||||||+|.++..|+++. .....|+|+|+|+.|++.|+++ + .++.+.++|+..+|++ .||+|+++.
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~ 147 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 147 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeee
Confidence 45799999999999999998762 2346799999999999999875 2 3567888999988875 599999998
Q ss_pred cccccccCH--HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 326 CGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 326 ~ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+ +|+.++. ..+|++++|+|||||.|++++.....
T Consensus 148 ~-l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~ 183 (261)
T 4gek_A 148 T-LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 183 (261)
T ss_dssp C-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCS
T ss_pred e-eeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCC
Confidence 8 5555433 46899999999999999999876543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.9e-14 Score=139.73 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=102.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc--CCCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er--gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
..+|||||||+|.++..+++.+. .++++|+++.+++.++++ ..++.+..+++..+++++++||+|+|..+ +++.
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~ 129 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINS-LEWT 129 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESC-TTSS
T ss_pred CCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcCh-Hhhc
Confidence 47999999999999999999853 689999999999999887 34667888999999999999999999988 5556
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHH---------hhhhhhhhhhhccceEEee
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ---------KRWNFVRDFVENLCWELVS 389 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~---------~~W~~ie~l~~~~~W~ll~ 389 (667)
+++..++.++.++|||||+++++++.............. ..-..+..+.+..+|+.+.
T Consensus 130 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 130 EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 788899999999999999999998765432211110000 0112456667777777764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.7e-14 Score=135.51 Aligned_cols=103 Identities=21% Similarity=0.242 Sum_probs=89.5
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+|||||||+|.++..+++. ....++++|+++.+++.|+++ ++ ++.+..+++..+++++++||+|+|..+ +
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-l 121 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGS-V 121 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESC-G
T ss_pred CEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECch-H
Confidence 39999999999999999987 356899999999999988766 33 567888999999999999999999988 5
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
++.++...+++++.++|||||++++.++....
T Consensus 122 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 153 (219)
T 3dlc_A 122 FFWEDVATAFREIYRILKSGGKTYIGGGFGNK 153 (219)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH
T ss_pred hhccCHHHHHHHHHHhCCCCCEEEEEeccCcH
Confidence 55588889999999999999999999866543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=140.51 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=88.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
+.+|||||||+|.++..+++.+. .++++|+|+.|++.|+++.. ++.+..+++..+ +++++||+|+|..+ +++.+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~-l~~~~ 117 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHV-LEHID 117 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESC-GGGCS
T ss_pred CCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhH-HHhhc
Confidence 46899999999999999998864 58999999999999998755 677888888887 57789999999988 55567
Q ss_pred CHHHHHHHHH-hcccCCeEEEEEeCCCCh
Q 005959 333 KDGILLLEVD-RVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 333 d~~~~L~Ei~-RvLKPGG~Lvis~p~~~~ 360 (667)
++..+|+++. |+|||||+++++++....
T Consensus 118 ~~~~~l~~~~~~~LkpgG~l~i~~~~~~~ 146 (250)
T 2p7i_A 118 DPVALLKRINDDWLAEGGRLFLVCPNANA 146 (250)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEcCChHH
Confidence 8899999999 999999999999986543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=138.99 Aligned_cols=134 Identities=15% Similarity=0.086 Sum_probs=104.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc-c
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD-Q 332 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~-~ 332 (667)
..+|||||||+|.++..|++.+. .++++|+++.|++.++++..++.+..+++..+++++++||+|+|..++.|+. +
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence 37899999999999999999854 5899999999999999987788899999999999999999999998855554 3
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHH---HHhhhhhhhhhhhccceEEeec
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE---NQKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e---~~~~W~~ie~l~~~~~W~ll~~ 390 (667)
+...+|+++.++|||||+++++++.......+.... ....-..+..+.+..+|+.+..
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 179 (203)
T 3h2b_A 119 ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS 179 (203)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEE
Confidence 678999999999999999999987654311111000 0011244566666777776643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=134.57 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=87.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
..+|||||||+|.++..+++.+ ..++++|.++.+++.++++..++.+...+ +++++++||+|++..+ +++.++
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~-l~~~~~ 90 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANS-FHDMDD 90 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESC-STTCSC
T ss_pred CCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccc-hhcccC
Confidence 4799999999999999999885 37999999999999999886677777766 7888999999999988 555578
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 334 DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
...+++++.++|||||++++.++...
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWRKE 116 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence 88999999999999999999987654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=144.53 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=94.6
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL 311 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L 311 (667)
.+.+.+.+.+... ...+|||||||+|.++..+++.+ ..|+++|+|+.|++.++++. ++.+..+|++.+
T Consensus 21 ~~~~~l~~~~~~~--------~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~ 88 (261)
T 3ege_A 21 RIVNAIINLLNLP--------KGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVHP-QVEWFTGYAENL 88 (261)
T ss_dssp HHHHHHHHHHCCC--------TTCEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCCCT-TEEEECCCTTSC
T ss_pred HHHHHHHHHhCCC--------CCCEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHhcc-CCEEEECchhhC
Confidence 4445555555433 34899999999999999999864 56999999999999887765 788889999999
Q ss_pred CCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 312 PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 312 pfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
|+++++||+|+|..+ +++.++...+++++.|+|| ||++++.++..
T Consensus 89 ~~~~~~fD~v~~~~~-l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 89 ALPDKSVDGVISILA-IHHFSHLEKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp CSCTTCBSEEEEESC-GGGCSSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred CCCCCCEeEEEEcch-HhhccCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence 999999999999988 5555888999999999999 99998888754
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-14 Score=142.14 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEE
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIG 304 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~ 304 (667)
....+.+.+.+...+ ..+|||||||+|.++..+++.. ...++++|+|+.|++.|+++ ++ ++.+.
T Consensus 22 ~~~~~~l~~~~~~~~--------~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~ 91 (256)
T 1nkv_A 22 EEKYATLGRVLRMKP--------GTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFI 91 (256)
T ss_dssp HHHHHHHHHHTCCCT--------TCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHhcCCCC--------CCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE
Confidence 444555555554433 3799999999999999999873 34689999999999888754 43 47788
Q ss_pred eecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 305 SFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 305 ~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.+++..+++ +++||+|+|..+ +++.++...+|+++.|+|||||++++.++.
T Consensus 92 ~~d~~~~~~-~~~fD~V~~~~~-~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 92 HNDAAGYVA-NEKCDVAACVGA-TWIAGGFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp ESCCTTCCC-SSCEEEEEEESC-GGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred ECChHhCCc-CCCCCEEEECCC-hHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence 899999988 789999999888 455567889999999999999999998763
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=135.20 Aligned_cols=101 Identities=25% Similarity=0.317 Sum_probs=88.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
+..+|||||||+|.++..+ +. ..++++|+++.|++.++++...+.+..+++..+|+++++||+|++..+ +++.+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~~ 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTT-LEFVE 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESC-TTTCS
T ss_pred CCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcCh-hhhcC
Confidence 4579999999999999888 32 268999999999999998866678888899999999999999999988 55667
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
++..+++++.++|||||.++++++...
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 110 DVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 888999999999999999999998654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-14 Score=141.54 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=90.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
...+|||||||+|.++..+++.+.. .++++|+++.+++.|+++. ..+.+..+++..+++++++||+|+|..+ +++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~ 120 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA-LHY 120 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESC-GGG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchh-hhh
Confidence 4589999999999999999998642 7999999999999998874 4677888999999999999999999987 555
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.++...+|+++.++|||||.++++++.+
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 148 (253)
T 3g5l_A 121 IASFDDICKKVYINLKSSGSFIFSVEHP 148 (253)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred hhhHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 6888999999999999999999987753
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-14 Score=142.64 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=90.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
+..+|||||||+|.++..+++.. ...++++|+|+.+++.|+++. .++.+..+|+..+|+++++||+|++..+++|
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 132 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILA 132 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHh
Confidence 45799999999999999999872 357999999999999999875 4577888999999999999999999988444
Q ss_pred cc-cCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 330 WD-QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 330 ~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+. ++...+|+++.++|||||++++.++...
T Consensus 133 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (266)
T 3ujc_A 133 LSLENKNKLFQKCYKWLKPTGTLLITDYCAT 163 (266)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred cChHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 32 6677899999999999999999987543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-14 Score=141.57 Aligned_cols=103 Identities=26% Similarity=0.416 Sum_probs=88.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..+++.. ...++++|+|+.+++.++++ ++ .+.+..+++..+|+++++||+|++..+
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALES 138 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEech
Confidence 34799999999999999998863 35799999999999888765 43 467888899999999999999999988
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++.++...+|+++.++|||||++++.++..
T Consensus 139 -l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 139 -LHHMPDRGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp -TTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred -hhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 5556778899999999999999999998653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=139.40 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=90.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..+++.. +...++++|+|+.|++.++++..++.+..+|+..++ ++++||+|+|..+ +++.+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 109 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAV-FQWVP 109 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESC-GGGST
T ss_pred CCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCc-hhhCC
Confidence 45789999999999999998872 234689999999999999988767888889999988 7889999999988 66778
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+...+|+++.++|||||+++++++..
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 110 DHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp THHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 88999999999999999999998754
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=141.05 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=87.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
++.+|||||||+|.++..+++.+ ...++++|+|+.+++.|+++ ++ .+.+..+|+..+|+++++||+|+|..+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHV--TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTC--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 45799999999999999999883 45799999999999988765 43 377888999999999999999999988
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.+. +...+++++.++|||||++++.++.
T Consensus 124 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 124 IYNI--GFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp GGGT--CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred ceec--CHHHHHHHHHHHcCCCCEEEEEEee
Confidence 5554 6789999999999999999999864
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=138.32 Aligned_cols=101 Identities=24% Similarity=0.335 Sum_probs=87.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..+++.+ ..++++|+++.|++.++++ ++ ++.+..++++.+|+++++||+|+|..+ +
T Consensus 22 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-l 97 (239)
T 1xxl_A 22 EHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA-A 97 (239)
T ss_dssp TCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC-G
T ss_pred CCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCc-h
Confidence 4799999999999999999885 3699999999999888754 33 467888899999999999999999988 4
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++.+++..++.++.++|||||++++.++..
T Consensus 98 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 98 HHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 455788899999999999999999988654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.3e-14 Score=143.33 Aligned_cols=103 Identities=24% Similarity=0.306 Sum_probs=88.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..+++.. ...++++|+|+.|++.|+++ ++ .+.+..+++..+|+++++||+|++..+
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 159 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence 34799999999999999999872 23799999999999888764 33 467888999999999999999999988
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+. +.+++..+|+++.|+|||||++++.++..
T Consensus 160 l~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 160 FL-HSPDKLKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp GG-GCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hh-hcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 44 45678899999999999999999998754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=138.45 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=87.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
...+|||||||+|.++..+++.+ ..++++|+|+.|++.++++ ..++.+..+++..+++++++||+|++..+ +
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l 114 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHL-W 114 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESC-G
T ss_pred CCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCc-h
Confidence 45799999999999999999874 4699999999999999877 34677888999999999999999999988 6
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEE
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
|+.++...++.++.++|||||++++.
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 67778889999999999999999988
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=141.31 Aligned_cols=101 Identities=15% Similarity=0.265 Sum_probs=89.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
..+|||||||+|.++..+++.+ ..++++|+|+.|++.++++..++.+..+|+..+|+ +++||+|++..+ +++.++
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~-l~~~~d 132 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAM-LHWVKE 132 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESC-GGGCSC
T ss_pred CCEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcch-hhhCcC
Confidence 4799999999999999999853 57999999999999999886677788889999998 579999999988 666788
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 334 DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+..+|+++.|+|||||++++..+...
T Consensus 133 ~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 133 PEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 89999999999999999999987653
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=139.92 Aligned_cols=102 Identities=21% Similarity=0.346 Sum_probs=89.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++... .+..+++..+++++++||+|++..+++|+.+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence 34799999999999999999885 3689999999999999988653 3777899999999999999999887788877
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++..+|+++.++|||||.+++.++..
T Consensus 130 ~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 130 NKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred cHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 88899999999999999999998753
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=138.71 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=86.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC--CCCCCCccEEEeccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL--PYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L--pfpd~sFDlV~~s~~ll~~ 330 (667)
+..+|||||||+|.++..+++.+. .++++|+|+.|++.++++ +.+..+++..+ |+++++||+|+|..++.|
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~- 113 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEH- 113 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGG-
T ss_pred CCCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhh-
Confidence 347999999999999999998854 489999999999999887 66777777765 888999999999988444
Q ss_pred ccC--HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 331 DQK--DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 331 ~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.++ ...+++++.++|||||++++.++....
T Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 145 (240)
T 3dli_A 114 LDPERLFELLSLCYSKMKYSSYIVIESPNPTS 145 (240)
T ss_dssp SCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred CCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence 453 378999999999999999999987654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-14 Score=142.88 Aligned_cols=115 Identities=17% Similarity=0.303 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCc
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPA 301 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~ 301 (667)
..+.+.+.+.+.... ..+|||||||+|.++..|++.+. .++++|+|+.|++.|+++. ..+
T Consensus 43 ~~~~~~l~~~l~~~~--------~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~ 111 (293)
T 3thr_A 43 AEYKAWLLGLLRQHG--------CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKW 111 (293)
T ss_dssp HHHHHHHHHHHHHTT--------CCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTC
T ss_pred HHHHHHHHHHhcccC--------CCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhccccccccee
Confidence 444455555555333 37999999999999999999864 6899999999999987642 245
Q ss_pred eEEeecccCCC---CCCCCccEEEec-ccccccccC-------HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 302 MIGSFASKQLP---YPSLSFDMLHCA-RCGVDWDQK-------DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 302 ~~~~~da~~Lp---fpd~sFDlV~~s-~~ll~~~~d-------~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.+..++...++ +++++||+|+|. .+ +++..+ ...+++++.++|||||+|++..+.
T Consensus 112 ~~~~~d~~~~~~~~~~~~~fD~V~~~g~~-l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 112 VIEEANWLTLDKDVPAGDGFDAVICLGNS-FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEECCGGGHHHHSCCTTCEEEEEECTTC-GGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eEeecChhhCccccccCCCeEEEEEcChH-HhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 57778888888 888999999998 66 555556 678999999999999999999875
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=133.16 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=86.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CceEEeecccCCCCCCCCccEEEecccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
...+|||||||+|.++..+++.+ ..++++|+++.|++.|+++.. ++.+.++|+..++ ++++||+|+|+.+ ++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~ 125 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEV-LY 125 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESC-GG
T ss_pred CCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccH-HH
Confidence 34799999999999999999884 579999999999999987642 4678888998888 6789999999988 55
Q ss_pred cccCH---HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 330 WDQKD---GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 330 ~~~d~---~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+.+++ ..++.++.++|||||+++++++..
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 55555 468999999999999999988754
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=133.40 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=86.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-CCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
..+|||||||+|.++..+++.+ ..++++|+++.+++.+++.+ .++.+..+|+..+ +++++||+|+|+.+ +++.+
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~-l~~~~ 121 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHW-LAHVP 121 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESC-GGGSC
T ss_pred CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEech-hhcCC
Confidence 3699999999999999999884 46899999999999998877 4677888898888 78899999999988 44455
Q ss_pred CH--HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 333 KD--GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 333 d~--~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++ ..+|+++.++|||||.+++.++..
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 54 689999999999999999998765
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=137.74 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=87.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||||||+|.++..+++.+. ..++++|+|+.+++.|+++ ++. +.+..+|+..+|+++++||+|+|..+
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence 347999999999999999998853 3799999999999988765 443 67888999999999999999999988
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.|. +...+++++.++|||||+++++++.
T Consensus 124 l~~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 124 IYNI--GFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp SCCC--CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred Hhhc--CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 5554 6789999999999999999999864
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=140.27 Aligned_cols=99 Identities=10% Similarity=-0.016 Sum_probs=82.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------------------CCceEEeecccCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------------------LPAMIGSFASKQL 311 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------------------l~~~~~~~da~~L 311 (667)
..+|||+|||+|..+..|+++|. .|+|+|+|+.|++.|+++. .++.+.++|+..+
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 47999999999999999999875 5899999999999987543 3567889999999
Q ss_pred CCCC-CCccEEEeccccccccc-CHHHHHHHHHhcccCCeEEEEEe
Q 005959 312 PYPS-LSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 312 pfpd-~sFDlV~~s~~ll~~~~-d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
++++ ++||+|++..++.+..+ +...+++++.|+|||||+|++.+
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 9875 89999999877555433 34579999999999999997654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=133.64 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=83.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C------CceEEeecccCCCCCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L------PAMIGSFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l------~~~~~~~da~~Lpfpd~sFDlV~~ 323 (667)
..+|||||||+|.++..+++.+ ....++++|+++.+++.|+++. + ++.+.++++..+++++++||+|+|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 4799999999999999999874 3357999999999999998762 2 567888888888888889999999
Q ss_pred cccccccccCH--HHHHHHHHhcccCCeEEEEEeC
Q 005959 324 ARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..++.| .+++ ..+++++.++|||||+++++..
T Consensus 109 ~~~l~~-~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 109 IEVIEH-LDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp ESCGGG-CCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 988554 4544 6899999999999997776654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-14 Score=139.10 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=88.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
...+|||||||+|.++..+++.+ ...++++|+++.|++.|+++. ..+.+..+++..+++++++||+|+|..++.|
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 170 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhh
Confidence 45799999999999999999875 346899999999999998875 2467788899999999999999999998555
Q ss_pred cc-cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WD-QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+. ++...+|+++.++|||||++++.++.
T Consensus 171 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 199 (254)
T 1xtp_A 171 LTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 43 34678999999999999999999864
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=134.71 Aligned_cols=101 Identities=22% Similarity=0.348 Sum_probs=88.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--CceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
..+|||||||+|.++..+++.+. ..++++|+++.|++.|+++.. ++.+..+++..+++++++||+|++..+ +++.
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~ 120 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLA-LHYV 120 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESC-GGGC
T ss_pred CCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecc-cccc
Confidence 47999999999999999998853 268999999999999988753 467788899899998899999999987 5556
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++...+|+++.++|||||+++++++.
T Consensus 121 ~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 121 EDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 78889999999999999999999864
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=148.40 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=90.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------C----CCceEEeecccCC------CC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------G----LPAMIGSFASKQL------PY 313 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---------g----l~~~~~~~da~~L------pf 313 (667)
++.+|||||||+|.++..+++.......|+++|+|+.|++.|+++ | .++.+..+++..+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 457999999999999999988632345799999999999999876 4 4678888898887 99
Q ss_pred CCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 314 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 314 pd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++++||+|+++.+ +++.++...+|+++.|+|||||+|+++++..
T Consensus 163 ~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 163 PDSSVDIVISNCV-CNLSTNKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCCCEEEEEEccc-hhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 9999999999987 6667788999999999999999999987654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=137.37 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=88.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CceEEeecccCCCCCCCCccEEEecccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
+..+|||||||+|.++..+++.. +...++++|+|+.+++.|+++.. ++.+..+|+..++++ ++||+|+|..++.|
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHH 121 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGG
T ss_pred CCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCcccc
Confidence 45899999999999999999873 34679999999999999987733 577888999999988 89999999988444
Q ss_pred cccCHH--HHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 330 WDQKDG--ILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 330 ~~~d~~--~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.++.. .+++++.|+|||||+++++++....
T Consensus 122 -~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 122 -LEDEDKKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp -SCHHHHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred -CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 45544 5999999999999999999876544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=132.61 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=83.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C------CceEEeecccCCCCCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L------PAMIGSFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l------~~~~~~~da~~Lpfpd~sFDlV~~ 323 (667)
..+|||||||+|.++..+++.+ ....++++|+|+.+++.|+++. + .+.+..+|+..+++++++||+|+|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 108 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV 108 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred CCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence 4799999999999999999875 3367999999999999998762 1 567888888888888899999999
Q ss_pred cccccccccCH--HHHHHHHHhcccCCeEEEEEeC
Q 005959 324 ARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..++.| .+++ ..+++++.++|||||+++....
T Consensus 109 ~~~l~~-~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 109 IEVIEH-LDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp ESCGGG-CCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred HHHHHh-CCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 988554 4544 6899999999999996665543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=139.95 Aligned_cols=101 Identities=16% Similarity=0.225 Sum_probs=87.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC-CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp-fpd~sFDlV~~s~~ 326 (667)
+.+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++ ++ .+.+..+++..++ +++++||+|+|..+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 5799999999999999999885 4689999999999998765 33 4667888998888 78899999999988
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++.+++..+|+++.++|||||++++.++..
T Consensus 146 -l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (285)
T 4htf_A 146 -LEWVADPRSVLQTLWSVLRPGGVLSLMFYNA 176 (285)
T ss_dssp -GGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred -hhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence 5556788899999999999999999998753
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-13 Score=136.45 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=85.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecc-cccccc-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCAR-CGVDWD- 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~-~ll~~~- 331 (667)
..+|||||||+|.++..+++.+. .++++|+|+.|++.|+++...+.+..+|+..+++ +++||+|+|.. + +++.
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~-l~~~~ 125 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSS-IGHLA 125 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTG-GGGSC
T ss_pred CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCch-hhhcC
Confidence 47999999999999999998853 6899999999999999987788899999999988 68999999997 6 5544
Q ss_pred --cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 332 --QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 332 --~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++...+|+++.++|||||+|++.+.
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 3456799999999999999999854
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=142.67 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=86.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-------CCCceEEeecccCCCCCC------CCcc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPS------LSFD 319 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-------gl~~~~~~~da~~Lpfpd------~sFD 319 (667)
+..+|||||||+|.++..|++.......++++|+|+.|++.|+++ ..++.+.++++..+++++ ++||
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 458999999999999999996311356799999999999998875 446788899999999887 8999
Q ss_pred EEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 320 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 320 lV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+|+|..+ +|+. +...++.++.++|||||.|++.+
T Consensus 116 ~V~~~~~-l~~~-~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 116 MITAVEC-AHWF-DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp EEEEESC-GGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeHhhH-HHHh-CHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999988 5555 88999999999999999999844
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-14 Score=144.12 Aligned_cols=104 Identities=15% Similarity=0.090 Sum_probs=78.6
Q ss_pred CCCEEEEeCCCCchHHHHH----hhcCCcee--EEEEecCCHHHHHHHHHc-----CCC-c--eEEeecccCCC------
Q 005959 253 GVRTILDIGCGYGSFGAHL----FSKELLTM--CIANYEASGSQVQLTLER-----GLP-A--MIGSFASKQLP------ 312 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~L----a~~g~~~~--sV~gvD~S~~ml~~A~er-----gl~-~--~~~~~da~~Lp------ 312 (667)
+..+|||||||+|.++..+ +.+. ... .++++|+|+.|++.|+++ ++. + .+..++++.++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4579999999999876543 3322 223 359999999999988765 222 2 33455555443
Q ss_pred CCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 313 YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 313 fpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++++||+|+|..+ +||.+++..+|++++|+|||||+|++..+..
T Consensus 131 ~~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 131 KELQKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp TCCCCEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cCCCceeEEEEeee-eeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 67899999999988 7777899999999999999999999987643
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-13 Score=130.06 Aligned_cols=103 Identities=27% Similarity=0.343 Sum_probs=87.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C------CceEEeecccCCCCCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L------PAMIGSFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l------~~~~~~~da~~Lpfpd~sFDlV~~ 323 (667)
..+|||||||+|.++..+++.+ ..++++|+++.+++.++++. + .+.+...++..+++++++||+|++
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 4799999999999999999985 36899999999999998753 2 246788899999999999999999
Q ss_pred cccccccccCHH---HHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 ARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 s~~ll~~~~d~~---~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
..+ +++.+++. .+++++.++|||||++++.++....
T Consensus 108 ~~~-l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (235)
T 3sm3_A 108 QAF-LTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNW 146 (235)
T ss_dssp ESC-GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCT
T ss_pred cch-hhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcch
Confidence 988 55555665 8999999999999999999876543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-13 Score=128.53 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=85.5
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccccc-
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW- 330 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~- 330 (667)
+|||||||+|.++..+++.+. .++++|.++.+++.|+++ +.++.+..+++..+++++++||+|+|+.. |+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC--HLP 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC--CCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhh--cCC
Confidence 899999999999999998853 699999999999988765 55778888899999998899999999643 33
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.++...++.++.++|||||++++.++....
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 245678999999999999999999886644
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=133.98 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=84.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc-c
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD-Q 332 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~-~ 332 (667)
..+|||||||+|.++..+++.+ ..++++|+|+.+++.++++. .+.+..+++..++ ++++||+|+|..++.|+. +
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHH
T ss_pred CCcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcCHH
Confidence 4799999999999999999885 36899999999999998873 3445567888888 788999999998855543 2
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+...+|+++.++|||||+++++.+...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~ 145 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGE 145 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence 557899999999999999999976543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-13 Score=137.19 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=88.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
++.+|||||||+|.++..+++.......++++|+|+.+++.|+++ +.++.+.++|+..++++ ++||+|+|..+ +
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~-l 99 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAF-L 99 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESC-G
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECCh-h
Confidence 458999999999999999998732236799999999999988765 33567888999999985 69999999988 5
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++.++...+++++.++|||||++++.++.
T Consensus 100 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 56678889999999999999999999986
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-13 Score=130.71 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=85.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+|||||||+|.++..+++.+. .++++|+++.+++.|+++ +.++.+..+|+..+++++++||+|+|+.++.+
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 57999999999999999998864 799999999999988765 35678888999999988899999999976322
Q ss_pred c-ccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 W-DQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~-~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+ .++...+++++.++|||||.+++.++.
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 2 245678999999999999999998874
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.5e-14 Score=151.22 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=86.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCce---EEeecccCCCCCCCCccEEEecccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM---IGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~---~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
...+|||||||+|.++..|++++. .++++|+|+.|++.|++++++.. +...+...+|+++++||+|++..+ ++
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~v-l~ 182 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANT-LC 182 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESC-GG
T ss_pred CCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECCh-HH
Confidence 347999999999999999999864 68999999999999999876543 233455667788899999999998 55
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+.+++..+|+++.++|||||++++.++..
T Consensus 183 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 211 (416)
T 4e2x_A 183 HIPYVQSVLEGVDALLAPDGVFVFEDPYL 211 (416)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred hcCCHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 55789999999999999999999998753
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-13 Score=130.02 Aligned_cols=103 Identities=20% Similarity=0.159 Sum_probs=84.8
Q ss_pred CCEEEEeCCCCchH-HHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSF-GAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~-t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.+ ...+++.+ ..++++|.|+.|++.|+++ +.++.+..+++..+++++++||+|+|..+++
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDG---YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTT---CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 47999999999998 44555544 4699999999999888754 4567788889999999999999999998755
Q ss_pred ccc-cCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 329 DWD-QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 329 ~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
|+. ++...+++++.++|||||++++.++...
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 543 5567899999999999999999987543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-13 Score=130.34 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=84.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC---CCCC-CCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---PYPS-LSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L---pfpd-~sFDlV~~s~~ll~ 329 (667)
+.+|||||||+|.++..+++.+. .++++|+++.+++.|+++ ....+...+...+ ++.. ++||+|+|..+ ++
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~-l~ 127 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFA-LL 127 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESC-CC
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECch-hh
Confidence 47999999999999999998853 689999999999999988 3555666666655 5544 45999999988 44
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
..+...+++++.++|||||++++.++....
T Consensus 128 -~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 157 (227)
T 3e8s_A 128 -HQDIIELLSAMRTLLVPGGALVIQTLHPWS 157 (227)
T ss_dssp -SSCCHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred -hhhHHHHHHHHHHHhCCCeEEEEEecCccc
Confidence 677889999999999999999999986643
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-13 Score=131.38 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=86.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc-
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD- 331 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~- 331 (667)
+..+|||||||+|.++..+++.+. .++++|.|+.|++.|+++..++.+..+++..+++ +++||+|+|....+++.
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~ 115 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLK 115 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCC
T ss_pred CCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcC
Confidence 347999999999999999998853 6899999999999999887678888889988887 67999999766335555
Q ss_pred --cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 332 --QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 332 --~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++...+|+++.++|||||.+++.++..
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 116 TTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 344689999999999999999987644
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.7e-13 Score=131.45 Aligned_cols=129 Identities=15% Similarity=0.028 Sum_probs=94.7
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC------CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL------PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl------~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+|||||||+|.++..|++.+ ..++++|+|+.+++.|+++.. ++.+..+|+..++ ++++||+|+|..++.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 599999999999999998864 569999999999999987643 2678888988877 456999999998844
Q ss_pred cccc-CHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEee
Q 005959 329 DWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (667)
Q Consensus 329 ~~~~-d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~ 389 (667)
++.+ +...+++++.++|||||++++.+.......... .....-..+..+.+..+|+.+.
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP--PYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCS--SCCCCHHHHHHHHGGGTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCC--CccCCHHHHHHHHHHcCCeEEE
Confidence 4432 667899999999999999999877543211000 0001123455666667776653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.7e-13 Score=137.82 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=88.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||||||+|.++..++++. ...|+++|+++.+++.|+++ ++ ++.+..+|+..+|+++++||+|++..+
T Consensus 117 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES 194 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred CCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence 45799999999999999999872 24689999999999988764 44 477888999999999999999999988
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+.|+ +...+|+++.++|||||++++.++...
T Consensus 195 l~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 225 (312)
T 3vc1_A 195 TMYV--DLHDLFSEHSRFLKVGGRYVTITGCWN 225 (312)
T ss_dssp GGGS--CHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred hhhC--CHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence 5554 488999999999999999999986544
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=123.49 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=87.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc-
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD- 331 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~- 331 (667)
+..+|||||||+|.++..+++.+ ..++++|.++.+++.++++..++.+...++..+++++++||+|++....+++.
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred CCCeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 34799999999999999999885 36899999999999999887678888889988888889999999983335544
Q ss_pred -cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 332 -QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 332 -~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++...++.++.++|+|||.+++..+..
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 334689999999999999999987654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=134.65 Aligned_cols=103 Identities=14% Similarity=0.087 Sum_probs=86.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-----CceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-----~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
...+|||||||+|.++..+++.+ ...++++|+++.|++.|+++.. .+.+..+++..+++++++||+|+|..++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 35799999999999999999875 3579999999999999987642 3567788888999988899999999884
Q ss_pred cccccCH--HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKD--GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.| .++. ..+|+++.++|||||++++.++..
T Consensus 157 ~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 188 (241)
T 2ex4_A 157 GH-LTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188 (241)
T ss_dssp GG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred hh-CCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence 44 4443 489999999999999999988644
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-13 Score=129.01 Aligned_cols=104 Identities=24% Similarity=0.289 Sum_probs=87.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
...+|||||||+|.++..+++.+.. .++++|+++.+++.++++. ..+.+..+|+..+++++++||+|++..++.+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 3478999999999999999988643 6899999999999998764 3567888899889999899999999876433
Q ss_pred cc--------------cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 330 WD--------------QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 330 ~~--------------~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.. .+...+++++.++|||||.+++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 22 244689999999999999999999865
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=126.18 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=83.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..+++.+ ..++++|.++.+++.++++ ++ ++.+..+|+..+++ +++||+|++..++.
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANG---YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGG
T ss_pred CCeEEEEcCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhh
Confidence 3799999999999999999885 3689999999999888754 44 57788889988888 78999999998855
Q ss_pred ccc-cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWD-QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
|+. ++...+++++.++|||||++++.++.
T Consensus 109 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (199)
T 2xvm_A 109 FLEAKTIPGLIANMQRCTKPGGYNLIVAAM 138 (199)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEee
Confidence 443 25678999999999999998887643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-13 Score=136.12 Aligned_cols=104 Identities=22% Similarity=0.283 Sum_probs=89.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+..+|||||||+|.++..+++.+ +...++++|+++.+++.|+++ ++ ++.+...|+..+++++++||+|++..+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~- 114 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV- 114 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC-
T ss_pred CCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech-
Confidence 45799999999999999999873 346799999999999988765 33 567888899999999999999999988
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++.+++..+++++.++|||||++++.++..
T Consensus 115 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (276)
T 3mgg_A 115 LEHLQSPEEALKSLKKVLKPGGTITVIEGDH 145 (276)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred hhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 6666788899999999999999999988643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=124.18 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=96.2
Q ss_pred cccccccccccccch--hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH
Q 005959 216 EQISFRSASLIFDGV--EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293 (667)
Q Consensus 216 ~~~~F~~~~~~yd~~--~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~ 293 (667)
..+.|......|... ....+.+.+.+... ...+|||+|||+|.++..+++. ...++++|.++.+++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~ 89 (194)
T 1dus_A 21 KKLKFKTDSGVFSYGKVDKGTKILVENVVVD--------KDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKL 89 (194)
T ss_dssp EEEEEEEETTSTTTTSCCHHHHHHHHHCCCC--------TTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHH
T ss_pred CceEEEeCCCcCCccccchHHHHHHHHcccC--------CCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHH
Confidence 334454444455222 24445555555433 3479999999999999999987 3579999999999988
Q ss_pred HHHc----CCC---ceEEeecccCCCCCCCCccEEEeccccccc-ccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 294 TLER----GLP---AMIGSFASKQLPYPSLSFDMLHCARCGVDW-DQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 294 A~er----gl~---~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~-~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
++++ ++. +.+...++.. ++++++||+|+++.. +++ ..+...+++++.++|+|||.+++.++...
T Consensus 90 a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 90 AKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP-IRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp HHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC-STTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred HHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCC-cccchhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 8765 443 6777777766 455779999999876 444 34557899999999999999999988653
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-13 Score=131.28 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=85.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecc-cc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCAR-CG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~-~l 327 (667)
+..+|||||||+|.++..+++.+ ..++++|.++.|++.|+++ +..+.+..+++..++++ ++||+|+|.. ++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l 112 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDST 112 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccc
Confidence 34799999999999999999885 3689999999999988765 34678888899998887 7999999998 74
Q ss_pred cccc--cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 VDWD--QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~--~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.|+. ++...+|+++.++|||||++++..+.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 4442 45678999999999999999998774
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=134.23 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=84.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||||||+|.++..+++.. ...++++|+|+.+++.|+++ ++ .+.+..+|+..+| ++||+|+|..+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~ 138 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA 138 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCc
Confidence 34799999999999999999542 23799999999999998775 32 4667778887766 78999999998
Q ss_pred ccccc-cCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 GVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+.|+. ++...+|+++.++|||||.+++.++...
T Consensus 139 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 139 FEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred hhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 55554 5678899999999999999999987654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=128.56 Aligned_cols=96 Identities=24% Similarity=0.297 Sum_probs=84.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
..+|||||||+|.++..+++. +++|.++.+++.++++ .+.+..+++..+++++++||+|++..+ +++.++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTT-ICFVDD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESC-GGGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcch-HhhccC
Confidence 478999999999999998765 8999999999999987 566777888889999899999999988 555678
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 334 DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+..+|+++.++|+|||+++++++...
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~ 143 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRE 143 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence 88999999999999999999987654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-13 Score=133.38 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=81.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCC--CCCCCCccEEEe-ccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQL--PYPSLSFDMLHC-ARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~L--pfpd~sFDlV~~-s~~ 326 (667)
..+|||||||+|.++..+++.+ ...++++|.|+.|++.|+++. .++.+..+++..+ ++++++||+|++ .+.
T Consensus 61 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 61 GGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp CEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 4799999999999999998764 347999999999999998753 4567788888888 899999999999 544
Q ss_pred c-ccc--ccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 G-VDW--DQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 l-l~~--~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. .+. ..+...+++++.|+|||||+|++.+.
T Consensus 139 ~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred cchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 2 111 12234679999999999999998765
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=124.07 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=77.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC-CCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp-fpd~sFDlV~~s~~ 326 (667)
...+|||+|||+|.++..|++. ...|+++|.|+.|++.|+++ ++ ++.+...+...++ +.+++||+|+++..
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 3479999999999999999987 35699999999999988765 43 4566666666654 55789999998743
Q ss_pred cccc--------ccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~--------~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.++. ..+...++.++.++|||||++++.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 2322 1233578999999999999999987643
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.9e-13 Score=136.98 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=86.5
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--------CCceEEeecccCCCCCCCCccEEEeccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--------l~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+|||||||+|.++..|++.+ ..|+++|+|+.|++.|+++. .++.+.++|+..+++ +++||+|+|...
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~ 159 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSG 159 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHH
T ss_pred CcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCc
Confidence 589999999999999999985 35899999999999988652 357788999999988 679999998766
Q ss_pred ccccccC--HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 327 GVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 327 ll~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.+++.+. ...+|+++.++|||||+|++.++....
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 5776643 468999999999999999999986543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=134.28 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=83.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
+..+|||||||+|.++..+++. + ..|+++|+|+.|++.|+++ ++ .+.+..+|+..+ +++||+|++..
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~ 145 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLG 145 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEES
T ss_pred CcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcc
Confidence 3479999999999999999987 4 5699999999999988765 44 366777887766 68999999998
Q ss_pred cccccccCH---------HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 326 CGVDWDQKD---------GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 326 ~ll~~~~d~---------~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
++.|+ +++ ..+++++.++|||||++++.++....
T Consensus 146 ~~~~~-~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 146 AFEHF-ADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 188 (302)
T ss_dssp CGGGT-TCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred hHHhc-CccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 85554 333 68999999999999999999886543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-13 Score=138.98 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-------ceEEeecc------cCC--CCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-------AMIGSFAS------KQL--PYP 314 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-------~~~~~~da------~~L--pfp 314 (667)
..+|||||||+|..+..++..+ ...|+|+|+|+.|++.|+++ +.. +.+.+.++ ..+ +++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 5799999999998666666554 34699999999999999875 221 23545554 333 467
Q ss_pred CCCccEEEecccccccc---cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 315 SLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 315 d~sFDlV~~s~~ll~~~---~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+++||+|+|.++ +|+. ++...+|+++.|+|||||+|+++++.
T Consensus 127 ~~~FD~V~~~~~-lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFA-IHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESC-GGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECch-HHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 789999999987 5442 34578999999999999999999875
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=126.82 Aligned_cols=101 Identities=19% Similarity=0.256 Sum_probs=86.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC--CCCCCCCccEEEeccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ--LPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~--Lpfpd~sFDlV~~s~~ll~~ 330 (667)
+..+|||||||+|.++..+++.+ ..++++|+++.+++.++++.. .+..+++.. +++++++||+|++..+ +++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~-l~~ 105 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDV-LEH 105 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESC-GGG
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECCh-hhh
Confidence 45799999999999999999884 579999999999999987653 556667665 6788899999999988 555
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.+++..++.++.++|+|||+++++++...
T Consensus 106 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 106 LFDPWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp SSCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 67788999999999999999999987653
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.4e-13 Score=132.80 Aligned_cols=113 Identities=15% Similarity=0.118 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEee
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSF 306 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~ 306 (667)
..+.+.+++.+.. .+.+|||||||+|..+..+++.. ..+++++|+|+.|++.|+++ +..+.+..+
T Consensus 47 ~~~m~~~a~~~~~---------~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (236)
T 3orh_A 47 TPYMHALAAAASS---------KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG 115 (236)
T ss_dssp HHHHHHHHHHHTT---------TCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES
T ss_pred HHHHHHHHHhhcc---------CCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEee
Confidence 3455555555431 34799999999999999998874 45789999999999999865 344556666
Q ss_pred cccCC--CCCCCCccEEEec-----ccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 307 ASKQL--PYPSLSFDMLHCA-----RCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 307 da~~L--pfpd~sFDlV~~s-----~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+++.+ ++++++||.|++- .. .++..+...++.++.|+|||||+|++..
T Consensus 116 ~a~~~~~~~~~~~FD~i~~D~~~~~~~-~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 116 LWEDVAPTLPDGHFDGILYDTYPLSEE-TWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBGG-GTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred hHHhhcccccccCCceEEEeeeecccc-hhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 65543 5888999999752 22 3334567789999999999999998854
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=135.36 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=85.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CC--ceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LP--AMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~--~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||||||+|.++..++........++++|+++.+++.|+++. +. +.+.++|+..++++ ++||+|+|+.+
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 196 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGL 196 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECCh
Confidence 3579999999999999999644345568999999999999998763 22 67888999999988 89999999987
Q ss_pred ccccccCHH---HHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~---~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++| .+++. .+++++.++|||||++++++...
T Consensus 197 ~~~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 197 NIY-EPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp GGG-CCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred hhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 444 44554 37999999999999999998654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.2e-13 Score=135.88 Aligned_cols=104 Identities=16% Similarity=0.056 Sum_probs=79.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------C---------------------------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------L--------------------------- 299 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l--------------------------- 299 (667)
++.+|||||||+|.++..++..++ .+|+++|+|+.|++.|+++. .
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 457899999999998888777753 47999999999999887531 0
Q ss_pred -Cc-eEEeecccC-CCCC---CCCccEEEecccccccc---cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 300 -PA-MIGSFASKQ-LPYP---SLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 300 -~~-~~~~~da~~-Lpfp---d~sFDlV~~s~~ll~~~---~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+ .+..+|+.. .|++ .++||+|+|+++++|.. ++...+++++.|+|||||+|++++...
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~ 200 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 200 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 01 156677766 3443 57999999999955543 344689999999999999999997543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=127.45 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=82.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecc-ccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCAR-CGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~-~ll 328 (667)
..+|||||||+|.++..+++. ..++++|.|+.|++.|+++ +.++.+..+++..++++ ++||+|+|.. + +
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~-~ 107 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDS-L 107 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTG-G
T ss_pred CCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCc-h
Confidence 379999999999999999876 4689999999999988765 45677888898888887 7999999986 5 4
Q ss_pred ccc---cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWD---QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~---~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++. ++...+++++.++|||||.+++..+.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 444 34467999999999999999998764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=134.99 Aligned_cols=102 Identities=20% Similarity=0.118 Sum_probs=75.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC--------------------------------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-------------------------------- 300 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~-------------------------------- 300 (667)
.+.+|||||||+|.++..++... ...|+++|+|+.|++.|+++...
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 34799999999999554444432 34799999999999988763110
Q ss_pred ---ceEEeecccC-CCC-----CCCCccEEEeccccccc---ccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 301 ---AMIGSFASKQ-LPY-----PSLSFDMLHCARCGVDW---DQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 301 ---~~~~~~da~~-Lpf-----pd~sFDlV~~s~~ll~~---~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..+..+|+.. +|+ ++++||+|+|+.++.+. .++...+|+++.|+|||||+|++...
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~ 216 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 2344557766 664 45679999999884442 34577899999999999999999853
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-12 Score=126.62 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=83.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
+..+|||||||+|.++..+++.+. .++++|+|+.|++.|+++ +.++.+.++|+..++++ ++||+|+|....+
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTI 116 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCch
Confidence 347999999999999999998853 689999999999988754 55778888899888876 6899999875444
Q ss_pred ccc--cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWD--QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~--~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++. ++...+++++.++|||||.+++..+.
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 443 34568999999999999999987764
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-12 Score=132.11 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=85.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
+..+|||||||+|.++..+++. + ..|+++|+|+.+++.|+++ ++ .+.+..+|+..+| ++||+|++..
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~ 163 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIE 163 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred CcCEEEEEcccchHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeC
Confidence 4479999999999999999987 4 3799999999999998865 33 3667778887775 7899999998
Q ss_pred cccccc-cCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 326 CGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 326 ~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
++.|+. ++...+++++.++|||||.+++.++....
T Consensus 164 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 164 AFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred hHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 855544 56788999999999999999999987654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-12 Score=129.09 Aligned_cols=100 Identities=13% Similarity=0.229 Sum_probs=83.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+|||||||+|.++..|++.+. .|+++|+++.+++.|+++ ++++.+..+|+..+++ +++||+|+|+.+++|
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence 47999999999999999999853 689999999999887654 5577888889988887 789999999988554
Q ss_pred cc-cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WD-QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.. ++...+++++.++|||||++++....
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAM 225 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 43 33458999999999999998876543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=131.03 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=85.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCC-CCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPY-PSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpf-pd~sFDlV~~s~ 325 (667)
+..+|||||||+|.++..+++.+ ...++++|+++.|++.|+++ +. ++.+..+|+..+++ ++++||+|+|..
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 34799999999999999998875 34799999999999988765 22 35678889988888 688999999998
Q ss_pred ccccc---ccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDW---DQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~---~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++++. .++...+|+++.++|||||++++.++.
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 84331 345578999999999999999999875
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=130.20 Aligned_cols=104 Identities=17% Similarity=0.137 Sum_probs=83.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--C------------------------------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P------------------------------ 300 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~------------------------------ 300 (667)
.+.+|||||||+|.++..+++.+. ..|+++|+|+.|++.|+++.. +
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 457899999999999999988753 579999999999998876521 1
Q ss_pred --c-eEEeecccCCC-CCC---CCccEEEeccccccc---ccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 301 --A-MIGSFASKQLP-YPS---LSFDMLHCARCGVDW---DQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 301 --~-~~~~~da~~Lp-fpd---~sFDlV~~s~~ll~~---~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+ .+..+++..++ +++ ++||+|+|..++.+. .++...++.++.++|||||+|++.++..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 201 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALK 201 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence 4 67778877764 355 899999999885432 3356789999999999999999998543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-11 Score=117.76 Aligned_cols=99 Identities=15% Similarity=0.009 Sum_probs=80.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..+++.+ ....++++|.++.+++.|+++ ++ ++.+..+++.......++||+|++... .
T Consensus 41 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~-~ 118 (204)
T 3e05_A 41 DLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS-G 118 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC-T
T ss_pred CCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC-C
Confidence 4799999999999999999884 346799999999999988764 43 466777777554444468999999876 3
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+ +...++.++.++|||||++++..+.
T Consensus 119 ~---~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 119 G---MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp T---CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred c---CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 2 6778999999999999999998764
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=131.37 Aligned_cols=100 Identities=11% Similarity=0.014 Sum_probs=78.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCC-----CCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY-----PSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpf-----pd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..|++++ ..|+++|.|+.|++.|+++.... +...+...++. .+++||+|+|+.+++
T Consensus 46 g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~ 121 (261)
T 3iv6_A 46 GSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKELAGHFDFVLNDRLIN 121 (261)
T ss_dssp TCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEESCGG
T ss_pred cCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhc-cceeeeeecccccccccCCCccEEEEhhhhH
Confidence 4799999999999999999986 36899999999999998875332 23334444433 257899999998866
Q ss_pred ccc-cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 329 DWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 329 ~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
|+. ++...++.++.++| |||.++++....
T Consensus 122 ~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 122 RFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp GSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred hCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 654 34467999999999 999999998654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=129.47 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=85.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--CceEEeecccCCCCCC-----CCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLPYPS-----LSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~~~~~~~da~~Lpfpd-----~sFDlV~~s~ 325 (667)
...+|||||||+|.++..|++.+. .|+++|+|+.|++.|+++.. ++.+.++|+..+++.. .+||+|++..
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 347899999999999999999864 68999999999999988743 5677888887765432 3499999998
Q ss_pred ccccccc--CHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 326 CGVDWDQ--KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 326 ~ll~~~~--d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+ +|+.+ +...+++++.++|||||++++.++....
T Consensus 133 ~-~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 168 (245)
T 3ggd_A 133 G-FHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC 168 (245)
T ss_dssp S-STTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred h-hhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence 7 55555 5678999999999999999999886544
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-12 Score=129.09 Aligned_cols=99 Identities=22% Similarity=0.347 Sum_probs=85.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..+++.. ....++++|+++.|++.|++++..+.+..+++..+|+++++||+|++..+ .
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-~---- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-P---- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-C----
T ss_pred CCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC-h----
Confidence 34799999999999999999872 23479999999999999999887788888999999999999999998754 1
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.++.++.++|||||.+++.++....
T Consensus 159 ---~~l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 159 ---CKAEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp ---CCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred ---hhHHHHHHhcCCCcEEEEEEcCHHH
Confidence 3589999999999999999986543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-12 Score=133.27 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=83.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------------CCceEEeecccCCC----CC--
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------------LPAMIGSFASKQLP----YP-- 314 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------------l~~~~~~~da~~Lp----fp-- 314 (667)
...+|||||||+|.++..+++.+ ...++++|+|+.|++.|+++. .++.+.++|+..++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 34799999999999999998763 457999999999999887652 14567888888876 64
Q ss_pred CCCccEEEecccccccc-cC---HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 315 SLSFDMLHCARCGVDWD-QK---DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 315 d~sFDlV~~s~~ll~~~-~d---~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+++||+|+|..+ +||. .+ ...+|.++.++|||||+|+++.+.
T Consensus 112 ~~~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFV-CHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETC-GGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEecc-hhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 459999999987 6665 33 458999999999999999999885
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=132.33 Aligned_cols=102 Identities=16% Similarity=0.240 Sum_probs=81.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------------------------------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------------------------- 298 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------------------------------- 298 (667)
...+|||||||+|.++..++++. ....|+++|+++.|++.|+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 45799999999999999999872 3457999999999999998752
Q ss_pred -----------------------------CCceEEeecccCCC-----CCCCCccEEEecccccccc------cCHHHHH
Q 005959 299 -----------------------------LPAMIGSFASKQLP-----YPSLSFDMLHCARCGVDWD------QKDGILL 338 (667)
Q Consensus 299 -----------------------------l~~~~~~~da~~Lp-----fpd~sFDlV~~s~~ll~~~------~d~~~~L 338 (667)
.++.+.++|....+ +.+++||+|+|..+ ++|. ++...+|
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~v-l~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSL-TKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESC-HHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChH-HHHhhhcCCHHHHHHHH
Confidence 13556666665443 57789999999987 4333 2456899
Q ss_pred HHHHhcccCCeEEEEEeC
Q 005959 339 LEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 339 ~Ei~RvLKPGG~Lvis~p 356 (667)
+++.++|||||+|++...
T Consensus 204 ~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHHEEEEEEEEEECC
T ss_pred HHHHHHhCCCcEEEEecC
Confidence 999999999999999754
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.5e-12 Score=120.14 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=83.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--CCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--fpd~sFDlV~~s~ 325 (667)
...+|||+|||+|.++..+++.+ ...|+++|.++.|++.|+++ ++ ++.+.++|+..++ +++++||+|+++.
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRG--AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT--CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCEEEEeCCCcCHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 34799999999999999888875 34699999999999988764 43 5678888877664 4578999999987
Q ss_pred cccccc-cCHHHHHHHHHh--cccCCeEEEEEeCCC
Q 005959 326 CGVDWD-QKDGILLLEVDR--VLKPGGYFVWTSPLT 358 (667)
Q Consensus 326 ~ll~~~-~d~~~~L~Ei~R--vLKPGG~Lvis~p~~ 358 (667)
. +++. ++...++.++.+ +|+|||++++.....
T Consensus 122 p-~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 P-YNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp C-TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred C-CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 6 4443 566789999999 999999999987643
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=128.86 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=83.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH------HHHHHHHc----CC--CceEEeec---ccCCCCCCCCc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS------QVQLTLER----GL--PAMIGSFA---SKQLPYPSLSF 318 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~------ml~~A~er----gl--~~~~~~~d---a~~Lpfpd~sF 318 (667)
..+|||||||+|.++..++++......++++|+|+. |++.|+++ ++ ++.+..+| ...+|+++++|
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f 123 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHF 123 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCE
Confidence 479999999999999999987312357999999987 88887665 22 45677776 56678888999
Q ss_pred cEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 319 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 319 DlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
|+|+|..+ +++.+++..+++.+.++++|||++++.+....
T Consensus 124 D~v~~~~~-l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 124 DRVVLAHS-LWYFASANALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp SEEEEESC-GGGSSCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred EEEEEccc-hhhCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 99999988 45556777777777778888999999987653
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-12 Score=126.75 Aligned_cols=89 Identities=19% Similarity=0.320 Sum_probs=79.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecc-cCCCCC-CCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQLPYP-SLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da-~~Lpfp-d~sFDlV~~s~~ll~~~ 331 (667)
..+|||||||+|.++..+++.+ ..|+++|+|+.|++.++++..++.+.++|+ +.+|++ +++||+|+|+
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------- 118 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------- 118 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------
T ss_pred CCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------
Confidence 4799999999999999999985 469999999999999999877788888888 678988 8999999987
Q ss_pred cCHHHHHHHHHhcccCCeEEE
Q 005959 332 QKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
.+...+++++.++|||||.++
T Consensus 119 ~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp SCCSGGGGGHHHHEEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCcEEE
Confidence 245578999999999999999
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=9e-12 Score=122.20 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=85.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
..+|||||||+|.++..++ ..++++|+++. .+.+..+++..+|+++++||+|+|..++ |+ .+
T Consensus 68 ~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~~ 129 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR------NPVHCFDLASL----------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG-TN 129 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-SC
T ss_pred CCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------CceEEEeccccCCCCCCCEeEEEEehhc-cc-cC
Confidence 4789999999999998884 34899999976 4557778888899999999999999884 54 77
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeec
Q 005959 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~ 390 (667)
...++.++.++|+|||++++.++.... ..-..+..+.+..+|+.+..
T Consensus 130 ~~~~l~~~~~~L~~gG~l~i~~~~~~~----------~~~~~~~~~l~~~Gf~~~~~ 176 (215)
T 2zfu_A 130 IRDFLEEANRVLKPGGLLKVAEVSSRF----------EDVRTFLRAVTKLGFKIVSK 176 (215)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECGGGC----------SCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEcCCCC----------CCHHHHHHHHHHCCCEEEEE
Confidence 889999999999999999999864321 01233455566667766543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=115.30 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=76.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecc-cCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFAS-KQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da-~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||||||+|.++..+++.. ....++++|.++.+++.|+++ +.. ..+...+. +.++..+++||+|++..+
T Consensus 26 ~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~- 103 (178)
T 3hm2_A 26 HETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGG- 103 (178)
T ss_dssp TEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC--
T ss_pred CCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCc-
Confidence 4799999999999999998873 456799999999999998865 443 12555554 333433379999999987
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++ ..+++++.++|||||++++.++..
T Consensus 104 ~~~----~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 104 LTA----PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp TTC----TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred ccH----HHHHHHHHHhcCCCCEEEEEeecc
Confidence 333 569999999999999999988753
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=128.68 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
++.+|||||||+|.++..++.+- ....|+++|.+++|++.|+++ ++ ++.+.++|+..+| +++||+|++...
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~- 197 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL- 197 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT-
T ss_pred CcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC-
Confidence 45899999999998775544331 346799999999999998865 54 5678888888775 789999998643
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.++..++++++.|+|||||+|++...
T Consensus 198 ---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 ---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 46778999999999999999999874
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=141.82 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=86.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----------C-CCceEEeecccCCCCCCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------G-LPAMIGSFASKQLPYPSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----------g-l~~~~~~~da~~Lpfpd~sFDlV~ 322 (667)
+.+|||||||+|.++..|++.+.....|+++|+++.|++.|+++ + .++.+.++|+..+++++++||+|+
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 47999999999999999998863346799999999999999762 2 246788999999999999999999
Q ss_pred ecccccccccCHH--HHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGVDWDQKDG--ILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll~~~~d~~--~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
|..++.| .+++. .+++++.|+|||| .++++++..
T Consensus 802 ~~eVLeH-L~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 802 CLEVIEH-MEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EESCGGG-SCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EeCchhh-CChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 9988554 44443 5899999999999 888888754
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=118.02 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=82.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC-CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp-fpd~sFDlV~~s~~ 326 (667)
..+|||+|||+|.++..+++..-....++++|.++.+++.|+++ ++ ++.+..+|+..++ +.+++||+|++...
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 47999999999999999998721234799999999999988765 33 5678888888776 66789999999865
Q ss_pred cccc--------ccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~--------~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+.. ..+...++.++.++|||||++++..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 3221 1133579999999999999999988643
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-11 Score=113.11 Aligned_cols=108 Identities=12% Similarity=0.182 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 305 (667)
......+.+.+.... ..+|||+|||+|.++..+++. ...++++|.++.+++.++++ ++ ++.+..
T Consensus 21 ~~~~~~~~~~~~~~~--------~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 89 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNK--------DDVVVDVGCGSGGMTVEIAKR---CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIK 89 (183)
T ss_dssp HHHHHHHHHHHCCCT--------TCEEEEESCCCSHHHHHHHTT---SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHcCCCC--------CCEEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 334445555554333 379999999999999999883 45799999999999988765 33 466777
Q ss_pred ecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++... ++++++||+|++..+ .+...++.++.++ |||.+++.++.
T Consensus 90 ~d~~~-~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 90 GRAED-VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp SCHHH-HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred CCccc-cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEecc
Confidence 78776 777789999999876 5567899999999 99999999874
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=131.33 Aligned_cols=102 Identities=20% Similarity=0.186 Sum_probs=85.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
...+|||+|||+|.++..+++.+ ..|+++|+++.+++.|+++ ++.+.+...|+...+.++++||+|+|+.. +
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp-~ 308 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPP-F 308 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCC-C
T ss_pred CCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCc-h
Confidence 34799999999999999999985 3799999999999888754 55678888899888887789999999977 4
Q ss_pred cc-----ccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 329 DW-----DQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 329 ~~-----~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
|+ .++...++.++.++|||||.++++....
T Consensus 309 ~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 309 HVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp CTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred hhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 54 3445689999999999999999987643
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-11 Score=119.64 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=82.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--fpd~sFDlV~~s~~ 326 (667)
..+|||||||+|.++..+++.. +...++++|+++.+++.|+++ ++ ++.+..+|+..++ +++++||+|+++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 4689999999999999999873 346799999999999888754 43 5678888888887 78889999999865
Q ss_pred cccccc--------CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~--------d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..|.. ....++.++.++|+|||.+++...
T Consensus 121 -~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 121 -DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred -CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 33322 125799999999999999999865
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=121.30 Aligned_cols=101 Identities=13% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--fpd~sFDlV~~s~~ 326 (667)
..+|||||||+|.++..|++.. +...++|+|+|+.|++.|+++ ++ ++.+..+|+..++ +++++||.|++.+.
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 3689999999999999999873 346799999999999888764 44 5678888888876 78889999998754
Q ss_pred ccccccC--------HHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQK--------DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..|... ...++.++.++|||||.|++.+.
T Consensus 118 -~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 118 -DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred -CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 333321 25799999999999999999875
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=117.35 Aligned_cols=93 Identities=10% Similarity=0.022 Sum_probs=76.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
..+|||+|||+|.++..+++++ .++++|+++.|++. ..++.+.++|+.. ++++++||+|+|+.. +++.++
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~-~~~~~~ 93 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPP-YVPDTD 93 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCC-CBTTCC
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCC-CccCCc
Confidence 4699999999999999999885 79999999999987 3456677888776 677789999999876 444322
Q ss_pred ---------HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 334 ---------DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 334 ---------~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
...++.++.+.| |||.+++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 246889999999 99999998764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=123.83 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=81.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCC-C--CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P--YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L-p--fpd~sFDlV~~s~ 325 (667)
..+|||||||+|.++..+++.. +...|+|+|+|+.|++.|+++ ++ ++.+..+|+..+ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 4689999999999999999874 346799999999999887654 44 567888887774 4 7889999999986
Q ss_pred cccccccCH--------HHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. ..|.... ..++.++.|+|||||+|++++..
T Consensus 114 ~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 114 P-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp C-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred C-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence 5 4443222 25999999999999999998763
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-11 Score=124.46 Aligned_cols=104 Identities=11% Similarity=0.035 Sum_probs=81.5
Q ss_pred CCEEEEeCCCC---chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCC-----------CCCC
Q 005959 254 VRTILDIGCGY---GSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLP-----------YPSL 316 (667)
Q Consensus 254 ~~~VLDIGCGt---G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lp-----------fpd~ 316 (667)
..+|||||||+ |.++..+.+.. +...|+++|+|+.|++.|+++. ..+.+..+|+...+ ++..
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 47999999999 99887766542 3467999999999999998762 35677888875421 3334
Q ss_pred CccEEEecccccccccC--HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 317 SFDMLHCARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 317 sFDlV~~s~~ll~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+||+|+++.+ +|+.++ ...+|+++.++|||||+|++++....
T Consensus 157 ~~d~v~~~~v-lh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 157 RPAAIMLVGM-LHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp SCCEEEETTT-GGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred CCEEEEEech-hhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 8999999988 555544 67899999999999999999987653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=118.88 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=79.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
...+|||||||+|.++..+++.+ ...++++|.++.+++.|+++ +.. +.+..+|+.. +.+++||+|+++..
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~- 134 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLG--AKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANIL- 134 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESC-
T ss_pred CCCEEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCc-
Confidence 34799999999999999998874 34799999999999988765 443 6777777654 45689999999866
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.++ ...+++++.++|||||+++++++..
T Consensus 135 ~~~---~~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 135 AEI---LLDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp HHH---HHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred HHH---HHHHHHHHHHhcCCCCEEEEEecCc
Confidence 332 4679999999999999999987643
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-11 Score=120.12 Aligned_cols=98 Identities=20% Similarity=0.124 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH----HHHHcCCCceEEeecccC----CCCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ----LTLERGLPAMIGSFASKQ----LPYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~----~A~ergl~~~~~~~da~~----Lpfpd~sFDlV~~s 324 (667)
++.+|||||||+|.++..+++... ...|+++|+|+.|++ .|+++ .++.+..+|+.. .+++ ++||+|+|.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 457999999999999999988732 357999999998654 34433 355666667665 3555 799999998
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.. . ......++.++.|+|||||+|+++..
T Consensus 134 ~~-~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 134 IA-Q--KNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp CC-S--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-C--hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 32 2 22234569999999999999999853
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-11 Score=116.24 Aligned_cols=96 Identities=15% Similarity=0.038 Sum_probs=78.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||||||+|.++..+++. ...|+++|.++.|++.|+++ +++ +.+..+|+........+||+|++...
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~- 131 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG- 131 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC-
T ss_pred CCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc-
Confidence 479999999999999999988 35689999999999988765 443 67788887773333357999998764
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
. +.. ++.++.++|||||++++.....
T Consensus 132 ~----~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 132 G----SQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp C----CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred c----cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 2 455 9999999999999999998753
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-11 Score=118.40 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=80.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCCCC--CCCC-ccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLPY--PSLS-FDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~Lpf--pd~s-FDlV~~ 323 (667)
..+|||+|||+|.++..++.++. ..|+++|.|+.|++.|+++ ++ ++.+..+|+..+.. ++++ ||+|++
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 37899999999999998877753 4699999999999988764 43 56778888766432 3678 999999
Q ss_pred cccccccccCHHHHHHHH--HhcccCCeEEEEEeCCC
Q 005959 324 ARCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei--~RvLKPGG~Lvis~p~~ 358 (667)
... ++ ..+...++.++ .++|||||.++++....
T Consensus 132 ~~~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPP-FH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCC-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCC-CC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 876 44 34556788888 77899999999987643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-11 Score=122.42 Aligned_cols=103 Identities=20% Similarity=0.209 Sum_probs=79.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----------CC-CceEEeecccC-CC--CCCCCc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------GL-PAMIGSFASKQ-LP--YPSLSF 318 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----------gl-~~~~~~~da~~-Lp--fpd~sF 318 (667)
...+|||||||+|.++..|++.. ....++|+|+|+.|++.|+++ +. ++.+..+|+.. ++ +++++|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 34689999999999999999873 446799999999999887642 22 56788888876 77 888999
Q ss_pred cEEEecccccccccC--------HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 319 DMLHCARCGVDWDQK--------DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 319 DlV~~s~~ll~~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
|.|++.+. ..|... ...+++++.++|||||.|++....
T Consensus 125 D~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 125 TKMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eEEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 99998754 333211 146999999999999999998764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=110.38 Aligned_cols=96 Identities=20% Similarity=0.263 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCC-CCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPS-LSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd-~sFDlV~~s~~ 326 (667)
..+|||+|||+|.++..+++.+ ..++++|.++.+++.++++ +. .+.+..++... ++++ ++||+|++..+
T Consensus 34 ~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 109 (192)
T 1l3i_A 34 NDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGS 109 (192)
T ss_dssp TCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCC
T ss_pred CCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCc
Confidence 4799999999999999999885 5799999999999988764 33 45666667655 3333 58999999866
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. .+...++.++.++|+|||.+++..+.
T Consensus 110 ~----~~~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 110 G----GELQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp T----TCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred h----HHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 2 24578999999999999999998874
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-11 Score=133.09 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=92.0
Q ss_pred hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----------C
Q 005959 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------G 298 (667)
Q Consensus 230 ~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-----------g 298 (667)
....+..+.+.+...++ .+|||||||+|.++..++... ....++|+|+++.+++.|++. +
T Consensus 158 ~~~~i~~il~~l~l~~g--------d~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G 228 (438)
T 3uwp_A 158 SFDLVAQMIDEIKMTDD--------DLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYG 228 (438)
T ss_dssp HHHHHHHHHHHHCCCTT--------CEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCCCC--------CEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 35555566666655444 899999999999999998652 233599999999998877642 3
Q ss_pred ---CCceEEeecccCCCCCC--CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 299 ---LPAMIGSFASKQLPYPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 299 ---l~~~~~~~da~~Lpfpd--~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.++.+.++|+..+|+++ ..||+|+++.. + +.++....|.++.|+|||||.|++.++...
T Consensus 229 l~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~-~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 229 KKHAEYTLERGDFLSEEWRERIANTSVIFVNNF-A-FGPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp BCCCEEEEEECCTTSHHHHHHHHTCSEEEECCT-T-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred CCCCCeEEEECcccCCccccccCCccEEEEccc-c-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 35678899999988864 47999999865 3 346677899999999999999999877554
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-11 Score=120.16 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=80.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCC---CCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfp---d~sFDlV~~s 324 (667)
...+|||||||+|.++..++... ....|+++|.++.|++.|+++ ++ ++.+..+++..++++ +++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 45799999999999999998642 245799999999999888653 44 477888888888764 6799999997
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.. .+...++.++.++|||||++++...
T Consensus 149 ~~-----~~~~~~l~~~~~~LkpgG~l~~~~g 175 (240)
T 1xdz_A 149 AV-----ARLSVLSELCLPLVKKNGLFVALKA 175 (240)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred cc-----CCHHHHHHHHHHhcCCCCEEEEEeC
Confidence 53 5578899999999999999998753
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.5e-11 Score=116.82 Aligned_cols=102 Identities=17% Similarity=0.067 Sum_probs=79.9
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCC-CCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQL-PYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCG-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~L-pfpd~sFDlV~~s~~ 326 (667)
+..+|||+||| +|.++..+++.. ...|+++|.++.+++.|+++ ++++.+..+|+..+ ++++++||+|+++..
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 35799999999 999999999873 45799999999999888754 55677888886433 466789999999855
Q ss_pred ccccccC-------------------HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQK-------------------DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d-------------------~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++...+ ...++.++.++|||||++++..+.
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 133 -YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp -CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred -CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 322211 367999999999999999998664
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.7e-11 Score=115.57 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=78.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..+++.+ ..++++|.++.+++.|+++ +. ++.+..+|....+.++++||+|++..++.
T Consensus 78 ~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~ 154 (210)
T 3lbf_A 78 QSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPP 154 (210)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCS
T ss_pred CCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchh
Confidence 4799999999999999999883 5689999999999988765 33 46778888877777778999999997744
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+ ..+ ++.++|||||++++..+.
T Consensus 155 ~-~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 155 E-IPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp S-CCT------HHHHTEEEEEEEEEEECS
T ss_pred h-hhH------HHHHhcccCcEEEEEEcC
Confidence 4 433 689999999999999875
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-11 Score=127.58 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=81.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..+++.+ ...|+++|.| +|++.|+++ ++. +.+..+++..+++++++||+|++..+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g--~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTT--CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred CCCEEEEEeccchHHHHHHHHCC--CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 34799999999999999999985 3479999999 588877653 443 67889999999999999999999653
Q ss_pred c--cccccCHHHHHHHHHhcccCCeEEEEE
Q 005959 327 G--VDWDQKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 327 l--l~~~~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
. ++...+...++.++.|+|||||++++.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 2 333466788999999999999999743
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-11 Score=118.56 Aligned_cols=101 Identities=19% Similarity=0.182 Sum_probs=79.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HH----cCC-CceEEeecccCCCCCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LE----RGL-PAMIGSFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~e----rgl-~~~~~~~da~~Lpfpd~sFDlV~~s 324 (667)
..+|||||||+|.++..|++.. +...|+++|+|+.|++.+ ++ .+. ++.+.++|+..+|+++++ |.|+..
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 4789999999999999999873 346799999999988753 21 233 567889999999998877 887744
Q ss_pred ccc--c--ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCG--V--DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~l--l--~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
... . |+.+++..+++++.|+|||||.++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 321 1 2445667899999999999999999753
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.6e-11 Score=120.66 Aligned_cols=104 Identities=14% Similarity=0.032 Sum_probs=80.4
Q ss_pred cccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecc---cCCCCCCCCccEEEe
Q 005959 250 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFAS---KQLPYPSLSFDMLHC 323 (667)
Q Consensus 250 ~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da---~~Lpfpd~sFDlV~~ 323 (667)
...++.+|||+|||+|.++..+++.-.+...|+++|+++.|++.++++. .++..+.++. ...++..++||+|++
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~ 153 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYA 153 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEE
Confidence 3446689999999999999999987334567999999999998887653 2344444443 345677789999997
Q ss_pred cccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.. .+.++...++.++.++|||||+++++..
T Consensus 154 d~---~~~~~~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 154 DV---AQPEQAAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp CC---CCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ec---cCChhHHHHHHHHHHhccCCCEEEEEEe
Confidence 63 3345667899999999999999999864
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.5e-11 Score=116.91 Aligned_cols=94 Identities=13% Similarity=0.027 Sum_probs=76.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
..+|||||||+|.++..+++.+ ..++++|.++.+++.++++.. ++.+..+|+.....++++||+|++..++.+.
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 147 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTL 147 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred CCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHHH
Confidence 4799999999999999999885 579999999999999987632 5677777876633346799999999874443
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. .++.++|||||++++..+.
T Consensus 148 ~-------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 148 L-------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp C-------HHHHHTEEEEEEEEEEECS
T ss_pred H-------HHHHHHcCCCcEEEEEEcC
Confidence 2 3789999999999999764
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.7e-11 Score=127.15 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=79.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||||||+|.++..+++.+ ...|+++|.++ |++.|+++ +. .+.+..+++..+++++++||+|++..+.
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~g--~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 141 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 141 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred CCEEEEeeccCcHHHHHHHHcC--CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence 4799999999999999999885 34799999996 88887654 33 5678888999999998899999997631
Q ss_pred --cccccCHHHHHHHHHhcccCCeEEE
Q 005959 328 --VDWDQKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 328 --l~~~~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
+.+..+...++.++.++|||||.++
T Consensus 142 ~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 142 YFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 3334456789999999999999998
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=122.52 Aligned_cols=130 Identities=12% Similarity=0.147 Sum_probs=86.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceE-EeecccCCC---CCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI-GSFASKQLP---YPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~-~~~da~~Lp---fpd~sFDlV~~s~~ll 328 (667)
...+|||||||||.++..|++++ ...|+++|+++.|++.+.++...+.. ...++..++ ++..+||+|+|..+++
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~g--a~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNG--AKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI 162 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS
T ss_pred cccEEEecCCCccHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh
Confidence 34799999999999999999885 34699999999999886654433322 122333333 3445699999986633
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCChh--------hhhhhHH-HHhhhhhhhhhhhccceEEe
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ--------AFLRNKE-NQKRWNFVRDFVENLCWELV 388 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~--------~~lr~~e-~~~~W~~ie~l~~~~~W~ll 388 (667)
+ ...+|.++.|+|||||.|++...+.... +..++.. ....-+.+..+....+|...
T Consensus 163 s----l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~ 227 (291)
T 3hp7_A 163 S----LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVK 227 (291)
T ss_dssp C----GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred h----HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 2 3679999999999999999974221110 1111111 12233555666677777654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-11 Score=126.90 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=80.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
.+|||||||+|.++..+++.+ ....++++|.|+.|++.++++ ++...+...|... +.+++||+|+|+.. +|+
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~--~~~~~fD~Iv~~~~-~~~ 273 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS--EVKGRFDMIISNPP-FHD 273 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT--TCCSCEEEEEECCC-CCS
T ss_pred CeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc--cccCCeeEEEECCC-ccc
Confidence 689999999999999999875 234789999999999888764 5566676666654 34679999999987 443
Q ss_pred -----ccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 331 -----DQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 331 -----~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
..+...+++++.++|||||.+++..+..
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 2344689999999999999999987643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=114.20 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=79.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..+++++. ..|+++|.++.|++.|+++ ++ ++.+.++|+.. ++..+++||+|++...
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 37999999999999998887763 3799999999999988754 33 56788888766 5667789999999865
Q ss_pred cccccCHHHHHHHHHh--cccCCeEEEEEeCC
Q 005959 328 VDWDQKDGILLLEVDR--VLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~R--vLKPGG~Lvis~p~ 357 (667)
++ ......++.++.+ +|+|||+++++...
T Consensus 132 ~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 132 FR-RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CC-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 44 3455678888865 69999999998763
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.2e-11 Score=125.59 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=85.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC--CCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL--PYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L--pfpd~sFDlV~~s 324 (667)
...+|||||||+|.++..++++. +...++++|. +.+++.|+++ ++ .+.+..+|+... |++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 35799999999999999999873 4467999999 9999988865 32 467788887775 576 789999999
Q ss_pred ccccccccCH-HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 325 RCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 325 ~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.++++|.++. ..+|++++++|||||++++.++....
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR 292 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence 9866665332 57899999999999999999876543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=122.10 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=84.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||||||+|.++..+++.. +...++++|.+ .+++.|+++ ++ .+.+..+|+...+++++ ||+|++..+
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF 241 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence 34799999999999999999873 34579999999 999888765 33 36778888887777764 999999988
Q ss_pred ccccc-cCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 GVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
++++. ++...+|+++.++|+|||++++.++...
T Consensus 242 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 242 LHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred hccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 66654 2336899999999999999999987654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-11 Score=112.17 Aligned_cols=100 Identities=23% Similarity=0.223 Sum_probs=77.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccC-CCC---CCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQ-LPY---PSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~-Lpf---pd~sFDlV~~s~ 325 (667)
..+|||+|||+|.++..+++.+.. ++++|.++.+++.|+++ ++++.+..+|+.. ++. .+++||+|++..
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 378999999999999999998643 89999999999888764 4467777777665 221 134899999986
Q ss_pred cccccccCHHHHHHHHH--hcccCCeEEEEEeCCCC
Q 005959 326 CGVDWDQKDGILLLEVD--RVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~--RvLKPGG~Lvis~p~~~ 359 (667)
. ++ .+...++..+. ++|||||.++++.+...
T Consensus 119 ~-~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 P-YA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp C-TT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred C-Cc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 6 33 34456777777 99999999999887543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=8.9e-11 Score=111.86 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=85.9
Q ss_pred hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceE
Q 005959 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMI 303 (667)
Q Consensus 230 ~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~ 303 (667)
...+.+.+.+.+... ....+|||+|||+|.++..+++.+ ...++++|.++.+++.|+++ ++ ++.+
T Consensus 28 ~~~~~~~~~~~l~~~-------~~~~~vLD~GcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 98 (187)
T 2fhp_A 28 TDKVKESIFNMIGPY-------FDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEV 98 (187)
T ss_dssp CHHHHHHHHHHHCSC-------CSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred HHHHHHHHHHHHHhh-------cCCCCEEEeCCccCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcceEE
Confidence 344555555555311 134799999999999999988864 35799999999999888754 33 3667
Q ss_pred EeecccCC----CCCCCCccEEEecccccccccCHHHHHHHH--HhcccCCeEEEEEeCCC
Q 005959 304 GSFASKQL----PYPSLSFDMLHCARCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 304 ~~~da~~L----pfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei--~RvLKPGG~Lvis~p~~ 358 (667)
..+|+... ++++++||+|++... ++ .......+..+ .++|+|||++++..+..
T Consensus 99 ~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 99 RKMDANRALEQFYEEKLQFDLVLLDPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EECcHHHHHHHHHhcCCCCCEEEECCC-CC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 77776552 233679999999866 33 24456677777 99999999999987754
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=122.18 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=83.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..+++.. +...++++|. +.+++.|+++ ++ .+.+..+|+. .+++. +||+|++..+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 45799999999999999999863 4467899999 9999888764 33 4677778875 46665 8999999999
Q ss_pred ccccccC-HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 327 GVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 327 ll~~~~d-~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+++|.++ ..++|++++++|||||++++.++....
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD 279 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence 6666533 368999999999999999999876543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=125.26 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=78.5
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC----CceEEeecccCCCCCCCCccEEEeccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl----~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+|||+|||+|.++..+++.+ +...|+++|.++.|++.|+++ ++ ++.+...|... ++++++||+|+|+..
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~npp 301 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 301 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCC
T ss_pred CeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCC
Confidence 799999999999999999884 346799999999999888754 32 35567777665 577789999999977
Q ss_pred ccccc----cC-HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWD----QK-DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~----~d-~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+|.. .. ...++.++.++|||||.++++...
T Consensus 302 -fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 302 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp -C-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred -cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 4422 12 136899999999999999998653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=119.38 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCch----HHHHHhhc-CC-c-eeEEEEecCCHHHHHHHHHcC----------------------------
Q 005959 254 VRTILDIGCGYGS----FGAHLFSK-EL-L-TMCIANYEASGSQVQLTLERG---------------------------- 298 (667)
Q Consensus 254 ~~~VLDIGCGtG~----~t~~La~~-g~-~-~~sV~gvD~S~~ml~~A~erg---------------------------- 298 (667)
..+|||+|||+|. ++..|++. +. . ...|+|+|+|+.|++.|++..
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 3689999999998 55556654 21 1 257999999999999998641
Q ss_pred --------CCceEEeecccCCCCC-CCCccEEEecccccccccCH--HHHHHHHHhcccCCeEEEEE
Q 005959 299 --------LPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 299 --------l~~~~~~~da~~Lpfp-d~sFDlV~~s~~ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis 354 (667)
..+.|.+.|....|++ .++||+|+|.++++++. +. .+++.+++++|+|||+|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1355677787776665 57899999998855553 33 67999999999999999984
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-11 Score=118.06 Aligned_cols=102 Identities=9% Similarity=0.005 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCCCCCC-----CCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPS-----LSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~Lpfpd-----~sFDlV~~ 323 (667)
...+|||+|||+|.++..+++.+ ....++++|+++.+++.|+++. .++.+.++|+.. ++++ ++||+|+|
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS 107 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred CCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence 34799999999999999999884 3467999999999999887652 245566667665 5665 89999999
Q ss_pred cccccccc------cC-------------------HHHHHHHHHhcccCCeEEEEEeC
Q 005959 324 ARCGVDWD------QK-------------------DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~------~d-------------------~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+...+... +. ...+++++.++|||||++++.+.
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 74422111 00 05688999999999999444443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-11 Score=111.37 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=78.4
Q ss_pred CCEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~sFDlV~~s 324 (667)
..+|||+|||+|.++..+++. + ....++++|.++ +++. .++.+..+|+...+ +++++||+|++.
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~-~~~~v~~~D~~~-~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIG-GKGRIIACDLLP-MDPI-----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHC-TTCEEEEEESSC-CCCC-----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeCCCCCHHHHHHHHHhC-CCCeEEEEECcc-cccc-----CcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 479999999999999999887 3 235799999998 7543 35667777887776 778899999998
Q ss_pred ccccccccCH-----------HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 325 RCGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 325 ~~ll~~~~d~-----------~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.. +++..+. ..++.++.++|+|||.+++.++...
T Consensus 96 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 96 MA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp CC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred CC-ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 66 4444443 5799999999999999999887554
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=111.92 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=78.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..+++.. ....++++|.++.+++.++++ ++ ++.+..+++..++ ++++||+|++...
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 4799999999999999998762 345799999999999888754 44 3677778877766 4578999998642
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+...++.++.++|+|||++++...
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 4567899999999999999999865
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=117.47 Aligned_cols=98 Identities=19% Similarity=0.104 Sum_probs=80.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCC---CCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfp---d~sFDlV~~s 324 (667)
...+|||||||+|..+..++... ....|+++|.++.+++.|+++ ++ ++.+..++++.++.. +++||+|+|.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 45799999999999999998763 346799999999999888754 54 477888888887753 4799999997
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+ .+...++.++.++|||||+|++...
T Consensus 159 a~-----~~~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 159 AV-----APLCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp SS-----CCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred Cc-----CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 43 3467899999999999999998664
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=8.8e-11 Score=111.61 Aligned_cols=101 Identities=11% Similarity=0.066 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CCCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lpfpd~sFDlV~~s~~ 326 (667)
..+|||+|||+|.++..+++.+ ...++++|.++.+++.|+++ ++ .+.+..+|+.. ++..+++||+|++...
T Consensus 32 ~~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 109 (177)
T ss_dssp SCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence 4799999999999999999874 35799999999999988764 33 35677777665 4444567999999855
Q ss_pred ccccccCHHHHHHHHH--hcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVD--RVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~--RvLKPGG~Lvis~p~~ 358 (667)
++. .....++..+. ++|+|||++++.....
T Consensus 110 -~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 110 -YAK-ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp -SHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred -CCc-chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 322 23456777776 9999999999988754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.1e-11 Score=119.07 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCC-HHHHHHH---HHc----CC-CceEEeecccCCCCC-CCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEAS-GSQVQLT---LER----GL-PAMIGSFASKQLPYP-SLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S-~~ml~~A---~er----gl-~~~~~~~da~~Lpfp-d~sFDlV~~ 323 (667)
..+|||||||+|.++..|+++. ....|+|+|+| +.|++.| +++ ++ ++.+..+++..+|.. .+.||.|++
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 4789999999999999998653 35679999999 7777776 432 43 467888888888632 134555544
Q ss_pred cccc----cccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 324 ARCG----VDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 324 s~~l----l~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
++.. .+...+...+|.++.|+|||||+|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 4320 1111233568999999999999999944
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=115.07 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CCCC-----CCCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYP-----SLSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lpfp-----d~sFDlV 321 (667)
+.+|||||||+|..+..+++.-.....|+++|.++.+++.|+++ ++ .+.+..+|+.. ++.. .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 47999999999999999998522246799999999999988764 44 36677777644 3322 2689999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++... .+...+...++.++ ++|||||++++.+...
T Consensus 139 ~~d~~-~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 139 FLDHW-KDRYLPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EECSC-GGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEcCC-cccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 99865 33333344577777 9999999999987653
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=115.31 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=81.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----C-CCceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----G-LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-----g-l~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..+++.-.+...++++|.++.+++.|+++ + .++.+..+|+...++++++||+|++.
T Consensus 97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~--- 173 (258)
T 2pwy_A 97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD--- 173 (258)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE---
T ss_pred CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC---
Confidence 47999999999999999998711235799999999999988765 4 34677888888888888899999984
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+++..++.++.++|+|||++++.++..
T Consensus 174 ---~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 174 ---LMEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp ---SSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred ---CcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 2455679999999999999999998753
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=117.59 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=81.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----C---CCceEEeecccCCCCCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----G---LPAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-----g---l~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
..+|||+|||+|.++..+++.......++++|.++.+++.|+++ + .++.+..+|+...++++++||+|++..
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 179 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM 179 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES
T ss_pred CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEECC
Confidence 37999999999999999998521235799999999999888765 3 356778888888888888999999842
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++..++.++.++|+|||++++..+..
T Consensus 180 ------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 180 ------LAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp ------SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ------cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 345579999999999999999998853
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=126.17 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=80.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..+++++. ..|+++|.| .|++.|+++ ++. +.+..+++..++++ ++||+|+|...
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~ 138 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWM 138 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcCh
Confidence 457999999999999999999863 379999999 999887654 443 67888999999888 79999999654
Q ss_pred cccc--ccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDW--DQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~--~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+.. ......++.++.++|||||+++++..
T Consensus 139 ~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 139 GYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp BTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred hhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 2222 24567899999999999999986543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.3e-11 Score=117.32 Aligned_cols=100 Identities=10% Similarity=0.229 Sum_probs=77.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+.+|||||||+|.++..++.... ...++++|+++.|++.++++ |+...+...+.... .+.++||+|.+..+ +
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~-L 125 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKM-L 125 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETC-H
T ss_pred CCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhH-H
Confidence 357999999999999999977643 34899999999999988754 55534444454333 45678999999988 5
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
|+.++.+..+.++.+.|+|||+||-..
T Consensus 126 HlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 126 PVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred HhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 555666677779999999999988655
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=121.06 Aligned_cols=110 Identities=15% Similarity=0.064 Sum_probs=84.5
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEee
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF 306 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~ 306 (667)
.....+.+.+...+ +.+|||||||+|.++..+++.+.....|+++|.++.+++.|+++ ++ ++.+..+
T Consensus 62 ~~~~~l~~~l~~~~--------~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~ 133 (317)
T 1dl5_A 62 SLMALFMEWVGLDK--------GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG 133 (317)
T ss_dssp HHHHHHHHHTTCCT--------TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHhcCCCC--------cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 34445555555433 37999999999999999998753335699999999999988765 43 3677788
Q ss_pred cccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 307 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 307 da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|....+.++++||+|++..++.+. . .++.++|||||++++...
T Consensus 134 d~~~~~~~~~~fD~Iv~~~~~~~~-~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 134 DGYYGVPEFSPYDVIFVTVGVDEV-P------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSCC-C------HHHHHHEEEEEEEEEEBC
T ss_pred ChhhccccCCCeEEEEEcCCHHHH-H------HHHHHhcCCCcEEEEEEC
Confidence 887766566899999999874443 2 578899999999999864
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=120.76 Aligned_cols=112 Identities=19% Similarity=0.280 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEE
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIG 304 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~ 304 (667)
..|.+.+.+.+.... ..+|||||||+|.++..+++.+ ...|+++|.+ .|++.|+++ ++ .+.+.
T Consensus 24 ~~y~~ai~~~~~~~~--------~~~VLDiGcGtG~ls~~la~~g--~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~ 92 (328)
T 1g6q_1 24 LSYRNAIIQNKDLFK--------DKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMS-SIIEMAKELVELNGFSDKITLL 92 (328)
T ss_dssp HHHHHHHHHHHHHHT--------TCEEEEETCTTSHHHHHHHHTC--CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHhhHhhcC--------CCEEEEecCccHHHHHHHHHCC--CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEE
Confidence 344455544444333 3799999999999999999875 3479999999 588877654 43 36778
Q ss_pred eecccCCCCCCCCccEEEecccc--cccccCHHHHHHHHHhcccCCeEEEE
Q 005959 305 SFASKQLPYPSLSFDMLHCARCG--VDWDQKDGILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 305 ~~da~~Lpfpd~sFDlV~~s~~l--l~~~~d~~~~L~Ei~RvLKPGG~Lvi 353 (667)
.+++..+++++++||+|+|.... +........++.++.++|||||.++.
T Consensus 93 ~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 93 RGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp ESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 88999999888899999998532 22335567899999999999999984
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=117.23 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=80.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CC-CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||+|||+|.++..+++.-.....++++|.++.+++.|+++ +. ++.+..+|+.. ++++++||+|++.
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~-- 186 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD-- 186 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC--
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEEc--
Confidence 347999999999999999998611235799999999999988765 33 46777788776 6777899999983
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.+++..++.++.++|||||++++.++.
T Consensus 187 ----~~~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 187 ----IPDPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp ----CSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred ----CcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 245668999999999999999999874
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-10 Score=116.01 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=79.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC--CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp--fpd~sFDlV~~s~ 325 (667)
..+|||+|||+|.++..+++++. ..|+++|+++.+++.|+++ ++ .+.+..+|+..++ +++++||+|+|+.
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 47999999999999999998853 2799999999999988764 44 3678888887776 5678999999974
Q ss_pred ccccc----c---------------cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDW----D---------------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~----~---------------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
..+.. . .+...++.++.++|||||+|++..+.
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 42221 0 12356999999999999999997653
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=111.82 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..+++.+.....++++|.++.+++.++++ +. ++.+..++.......+++||+|++..++.
T Consensus 78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~ 157 (215)
T 2yxe_A 78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGP 157 (215)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCchH
Confidence 47999999999999999998742225799999999999988765 33 35666667643222367899999998744
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.. .++.++|||||.+++..+.
T Consensus 158 ~~~-------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 158 KIP-------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SCC-------HHHHHTEEEEEEEEEEESS
T ss_pred HHH-------HHHHHHcCCCcEEEEEECC
Confidence 432 4889999999999998764
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=113.64 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=75.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccC----CCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQ----LPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~----Lpfpd~sFDlV~~s~ 325 (667)
+..+|||||||+|.++..+++... ...|+++|.++.|++.++++. .++.+..+|+.. ++++ ++||+|++.
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~- 150 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYED- 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEEC-
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEEe-
Confidence 457999999999999999998721 357999999999998887652 346677778877 7777 789999933
Q ss_pred cccccccCH---HHHHHHHHhcccCCeEEEEE
Q 005959 326 CGVDWDQKD---GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 326 ~ll~~~~d~---~~~L~Ei~RvLKPGG~Lvis 354 (667)
.+++ ..++.++.++|||||+++++
T Consensus 151 -----~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 151 -----VAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp -----CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 2233 67899999999999999997
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.8e-11 Score=118.62 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=79.4
Q ss_pred CCEEEEeCCCCchHHHHHhhc---CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC---CCCC-CCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---PYPS-LSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~---g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L---pfpd-~sFDlV~~s~~ 326 (667)
+.+|||||||+|..+..|++. ......|+++|.++.|++.|+....++.+.++|+..+ ++.+ .+||+|++...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 379999999999999999886 1234679999999999988764445677888888774 5544 47999998754
Q ss_pred ccccccCHHHHHHHHHh-cccCCeEEEEEeC
Q 005959 327 GVDWDQKDGILLLEVDR-VLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~R-vLKPGG~Lvis~p 356 (667)
| .+...+|.++.| +|||||+|++.+.
T Consensus 162 --~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 162 --H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp --C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred --h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 2 356789999998 9999999999876
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.1e-12 Score=124.52 Aligned_cols=96 Identities=13% Similarity=0.171 Sum_probs=79.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..+++.+ ..|+++|+++.|++.|+++ ++ ++.+.++|+..++ ++++||+|+++..
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~- 153 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPP- 153 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCC-
T ss_pred CCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCC-
Confidence 4799999999999999999985 5689999999999888754 44 5678888888777 6679999999977
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEE
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
+++..+....+.++.++|+|||++++.
T Consensus 154 ~~~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 154 WGGPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp CSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred cCCcchhhhHHHHHHhhcCCcceeHHH
Confidence 555555555788999999999997764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.6e-11 Score=121.56 Aligned_cols=96 Identities=13% Similarity=0.161 Sum_probs=65.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEE-eecccCCC---CCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG-SFASKQLP---YPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~-~~da~~Lp---fpd~sFDlV~~s~~ll~ 329 (667)
..+|||||||+|.++..|++++. ..|+++|+|+.|++.|+++....... ..+...+. ++...||.+.+..++.+
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 46999999999999999999853 37999999999999987765432211 01111111 11112444444333222
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
. ..+|.++.|+|||||.|++..
T Consensus 116 l----~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 116 L----DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp G----GGTHHHHHHHSCTTCEEEEEE
T ss_pred H----HHHHHHHHHhccCCCEEEEEE
Confidence 1 579999999999999999974
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.8e-10 Score=120.28 Aligned_cols=102 Identities=24% Similarity=0.246 Sum_probs=83.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..++++. +...++++|. +.+++.|+++ ++ .+.+..+|+. .+++. .||+|++..+
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 277 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHV 277 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESC
T ss_pred cCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhh
Confidence 45899999999999999999873 4567899999 9999888764 33 4677888876 56776 8999999999
Q ss_pred ccccccCHH--HHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 GVDWDQKDG--ILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 ll~~~~d~~--~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+++|. +.. ++|+++.++|||||++++.++...
T Consensus 278 lh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 278 LHDWD-DDDVVRILRRIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp GGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred hccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 65554 443 799999999999999999886554
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=115.13 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=79.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+.+|||+|||+|.++..+++.-.+...++++|.++.+++.|+++ ++. +.+..+|+... +++++||+|++..
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~~-- 170 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVILDL-- 170 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEECS--
T ss_pred CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEECC--
Confidence 47999999999999999998711346799999999999988765 443 67777787654 7788999999852
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++..++.++.++|+|||++++..+..
T Consensus 171 ----~~~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 171 ----PQPERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp ----SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ----CCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence 355679999999999999999988753
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-11 Score=130.41 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=80.4
Q ss_pred CCCEEEEeCCC------CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCC------CCCccE
Q 005959 253 GVRTILDIGCG------YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP------SLSFDM 320 (667)
Q Consensus 253 ~~~~VLDIGCG------tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfp------d~sFDl 320 (667)
.+.+||||||| +|..+..+++..++...|+++|+|+.|. ....++.+.++|+..+||. +++||+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH----VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG----GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh----hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 35799999999 7777777776533456899999999984 2345678899999999887 789999
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
|+|..+ |+..+...+|+++.|+|||||+|++.+..
T Consensus 292 Visdgs--H~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDDGS--HINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EEECSC--CCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EEECCc--ccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999743 44566788999999999999999999865
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5.6e-11 Score=113.24 Aligned_cols=87 Identities=20% Similarity=0.174 Sum_probs=73.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CceEEeecccCCCC---CCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPY---PSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~Lpf---pd~sFDlV~~s~~ll 328 (667)
++.+|||||||. +.+|.|+.|++.|+++.. .+.+.++++..+++ ++++||+|+|+.+ +
T Consensus 12 ~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~-l 73 (176)
T 2ld4_A 12 AGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLV-P 73 (176)
T ss_dssp TTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCS-T
T ss_pred CCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECCh-h
Confidence 458999999996 128999999999988742 47788889999887 8899999999987 5
Q ss_pred ccc-cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWD-QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
|+. ++...+|++++|+|||||+|++..+.
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 103 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEPV 103 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEccc
Confidence 555 77889999999999999999997653
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=118.26 Aligned_cols=122 Identities=7% Similarity=0.115 Sum_probs=90.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..+++.+.. .|+++|.++.+++.|+++ ++. +.+.++|+..++. +++||+|++...
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p- 201 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV- 201 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-
T ss_pred CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc-
Confidence 479999999999999999998643 699999999999888754 443 5688889888877 679999998643
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEee
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~ 389 (667)
.....++.++.++|||||++++.+....... .....+.+....+..+|+...
T Consensus 202 ----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------TTTTHHHHHHHHHHTTCEEEE
T ss_pred ----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc------cccHHHHHHHHHHHcCCeeEE
Confidence 2335789999999999999999887532110 012233445556666666543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=113.97 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=75.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH----HHHHcCCCceEEeecccC---CCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ----LTLERGLPAMIGSFASKQ---LPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~----~A~ergl~~~~~~~da~~---Lpfpd~sFDlV~~s~ 325 (667)
...+|||+|||+|.++..|++.......++++|.++.|++ .|+++ .++.+..+|+.. +++.+++||+|++..
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 3579999999999999999987212357899999987654 44443 466777788776 556678999999964
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. ..+....++.++.++|||||+++++..
T Consensus 156 ~---~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 156 A---QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp C---CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C---CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 3 122224568899999999999999754
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=5e-10 Score=113.50 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=78.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CCCC--CCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYP--SLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lpfp--d~sFDlV~~s 324 (667)
+.+|||||||+|..+..+++.......|+++|.++.+++.|+++ ++ ++.+..+|+.. ++.. .++||+|++.
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 47999999999999999998732246799999999999988765 44 36677777655 4432 3489999986
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.. ..+...++.++.++|||||++++.+..
T Consensus 144 ~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 144 AD----KPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp SC----GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred Cc----hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 42 344567999999999999999998764
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=122.21 Aligned_cols=113 Identities=20% Similarity=0.178 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEE
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIG 304 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~ 304 (667)
..|.+.+.+.+... +..+|||||||+|.++..+++.+ ...|+++|.++ |++.|+++ ++ .+.+.
T Consensus 36 ~~y~~~i~~~l~~~--------~~~~VLDiGcGtG~ls~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~ 104 (348)
T 2y1w_A 36 GTYQRAILQNHTDF--------KDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVI 104 (348)
T ss_dssp HHHHHHHHHTGGGT--------TTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHhccccC--------CcCEEEEcCCCccHHHHHHHhCC--CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEE
Confidence 34445555544433 34799999999999999999875 34799999996 88777653 43 46778
Q ss_pred eecccCCCCCCCCccEEEecccccccc-cCHHHHHHHHHhcccCCeEEEEEe
Q 005959 305 SFASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 305 ~~da~~Lpfpd~sFDlV~~s~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.+++..++++ ++||+|++....+|+. +.....+.++.++|||||.+++..
T Consensus 105 ~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 105 PGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp ESCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred EcchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 8888888876 5899999997756655 344678889999999999999654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-10 Score=113.01 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=79.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC-C-CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-p-fpd~sFDlV~~s~ 325 (667)
..+|||||||+|.++..|++.. ....|+++|.++.+++.|+++ ++ ++.+..+++... + ..+++||+|++..
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 4799999999999999999842 356799999999999988764 43 467787887553 3 3368999999764
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. ..+...++.++.++|||||+|++.+..
T Consensus 151 ~----~~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 151 A----KAQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp T----SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred c----HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 3 345678999999999999999986653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.5e-10 Score=110.42 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=77.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C------CCceEEeecccCCCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G------LPAMIGSFASKQLPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g------l~~~~~~~da~~Lpfpd~sFDlV~ 322 (667)
+..+|||||||+|.++..+++..-....|+++|.++.+++.++++ + .++.+..+|....+.++++||+|+
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 347999999999999999987621235799999999999888654 2 256677778776666677899999
Q ss_pred ecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.....+ ++.++.++|||||+++++...
T Consensus 157 ~~~~~~~-------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 157 VGAAAPV-------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp ECSBBSS-------CCHHHHHTEEEEEEEEEEESC
T ss_pred ECCchHH-------HHHHHHHhcCCCcEEEEEEec
Confidence 9876333 346889999999999998764
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.2e-10 Score=119.98 Aligned_cols=100 Identities=23% Similarity=0.336 Sum_probs=80.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..+++.. ....++++|+ +.+++.|+++ ++ .+.+..+|+.. +++. .||+|++..+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 257 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV 257 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence 35799999999999999999874 3467899999 9999988764 33 46777778754 4554 4999999998
Q ss_pred ccccccCH-HHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++++.+.. ..+|+++.++|||||++++.++
T Consensus 258 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 258 LLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 66654322 4799999999999999999987
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-10 Score=114.79 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=79.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC---------ceEEeecccCC-------CCCCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP---------AMIGSFASKQL-------PYPSLS 317 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~---------~~~~~~da~~L-------pfpd~s 317 (667)
..+|||+|||+|.++..++++. ....|+++|+++.+++.|+++-.. +.+..+|+..+ ++++++
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 4799999999999999999874 346899999999999999875322 56778888776 366789
Q ss_pred ccEEEecccccc----------------c-ccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 318 FDMLHCARCGVD----------------W-DQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 318 FDlV~~s~~ll~----------------~-~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
||+|+|+..... . ......++.++.++|||||+|++..+
T Consensus 116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 999999833111 1 12356789999999999999999765
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.07 E-value=4e-10 Score=114.32 Aligned_cols=100 Identities=14% Similarity=-0.000 Sum_probs=73.2
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH----HHHHHcCCCceEEeecccCCC---CCCCCccEEEec
Q 005959 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLERGLPAMIGSFASKQLP---YPSLSFDMLHCA 324 (667)
Q Consensus 252 ~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml----~~A~ergl~~~~~~~da~~Lp---fpd~sFDlV~~s 324 (667)
.++.+|||+|||+|.++..+++.......|+++|.++.|+ +.++++ .++.+..+|+.... ...++||+|++.
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccchhhhccccceEEEEec
Confidence 3568999999999999999988632345799999999885 344444 46677777876532 124689999998
Q ss_pred ccccccccCHHH-HHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGI-LLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~-~L~Ei~RvLKPGG~Lvis~p 356 (667)
.. . ++... ++..+.++|||||+|+++..
T Consensus 154 ~a-~---~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 154 IA-Q---PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp CC-C---TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CC-C---hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 54 2 34444 45566779999999999854
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-10 Score=113.55 Aligned_cols=102 Identities=23% Similarity=0.230 Sum_probs=78.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------------CC-CceEEeecccC-CC--CCCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GL-PAMIGSFASKQ-LP--YPSLS 317 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er------------gl-~~~~~~~da~~-Lp--fpd~s 317 (667)
..+|||||||+|.++..+++.+ ....++++|+|+.+++.|+++ ++ ++.+..+|+.. ++ +++++
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 4689999999999999999875 345799999999999887643 43 56778888776 66 77889
Q ss_pred ccEEEecccccccccC--------HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 318 FDMLHCARCGVDWDQK--------DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 318 FDlV~~s~~ll~~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
||.|+.... -.|... ...++.++.++|+|||+|++.+..
T Consensus 129 ~d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 129 LSKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp EEEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 999986543 122100 047999999999999999997653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-10 Score=118.50 Aligned_cols=102 Identities=17% Similarity=0.249 Sum_probs=83.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..++++. +...++++|. +.+++.|+++ ++ .+.+..+|+...++++. |+|++..+
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~v 265 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRI 265 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESC
T ss_pred CCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEech
Confidence 34799999999999999999873 3467899999 9999888764 43 36788888888877754 99999998
Q ss_pred ccccccC-HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d-~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++|.++ ...+|+++.++|||||++++.++..
T Consensus 266 lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 266 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 6666532 5689999999999999999988654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-10 Score=112.81 Aligned_cols=99 Identities=11% Similarity=0.083 Sum_probs=77.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---ceEEeecccCC-C-CCCCCccEEEecc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQL-P-YPSLSFDMLHCAR 325 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~L-p-fpd~sFDlV~~s~ 325 (667)
.+|||||||+|..+..|++.-.....|+++|.++.+++.|+++ ++. +.+..+++..+ + +++++||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4899999999999999998622346799999999999888754 443 56777776543 2 4468999999864
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. ..+...++.++.++|||||++++.+..
T Consensus 138 ~----~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 138 S----PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp C----TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred c----HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 3 344567999999999999999996553
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-10 Score=118.52 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=77.8
Q ss_pred CCCEEEEeCCCC--chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-----CceEEeecccCCC----CC--CCCcc
Q 005959 253 GVRTILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----PAMIGSFASKQLP----YP--SLSFD 319 (667)
Q Consensus 253 ~~~~VLDIGCGt--G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-----~~~~~~~da~~Lp----fp--d~sFD 319 (667)
+.++|||||||+ +.++..++++-.+...|+++|.|+.|++.|+++-. .+.+.++|+..++ .+ .++||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 357999999997 33444554442345689999999999998877521 3568888887752 11 35566
Q ss_pred -----EEEecccccccccC---HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 320 -----MLHCARCGVDWDQK---DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 320 -----lV~~s~~ll~~~~d---~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.|+++.+ +||.++ +..+++++.++|+|||+|++++....
T Consensus 158 ~~~p~av~~~av-LH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 158 LTRPVALTVIAI-VHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TTSCCEEEEESC-GGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cCCcchHHhhhh-HhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 5777665 777766 45799999999999999999987654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-10 Score=110.56 Aligned_cols=97 Identities=18% Similarity=0.115 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC----ceeEEEEecCCHHHHHHHHHc----C------CCceEEeecccCCC----CCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKEL----LTMCIANYEASGSQVQLTLER----G------LPAMIGSFASKQLP----YPS 315 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~----~~~sV~gvD~S~~ml~~A~er----g------l~~~~~~~da~~Lp----fpd 315 (667)
..+|||||||+|.++..+++... ....|+++|.++.+++.|+++ + .++.+..+|..... ..+
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 160 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKEL 160 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccC
Confidence 47999999999999999998743 335799999999999988765 3 25677778877765 556
Q ss_pred CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 316 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++||+|++.....+ ++.++.++|||||++++..+.
T Consensus 161 ~~fD~I~~~~~~~~-------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 161 GLFDAIHVGASASE-------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CCEEEEEECSBBSS-------CCHHHHHHEEEEEEEEEEEEE
T ss_pred CCcCEEEECCchHH-------HHHHHHHhcCCCcEEEEEEcc
Confidence 78999999876332 347889999999999998763
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=116.18 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ ++.+.+..++... ++++++||+|+++.. .+
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~-~~ 195 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLY-AE 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECC-HH
T ss_pred CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCc-HH
Confidence 47999999999999999998864 799999999999888764 4446666666554 245678999999754 22
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
....++.++.++|||||+++++...
T Consensus 196 ---~~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 196 ---LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHcCCCCEEEEEeec
Confidence 2467999999999999999998764
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.8e-10 Score=108.51 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------------------
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-------------------- 312 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~-~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp-------------------- 312 (667)
..+|||||||+|.++..++++... ...|+++|.++.+ ....+.+.++|+...+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~ 96 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDY 96 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------CCTTCEEEECCTTTTSSCCC-----------CHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------CCCCceEEEccccchhhhhhccccccccccchhhHH
Confidence 478999999999999999987321 4679999999831 1124567778887776
Q ss_pred -----CCCCCccEEEecccccccc----cCH-------HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 313 -----YPSLSFDMLHCARCGVDWD----QKD-------GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 313 -----fpd~sFDlV~~s~~ll~~~----~d~-------~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++++||+|+|..+ .++. .+. ..++.++.++|||||.|++..+..
T Consensus 97 ~~~~~~~~~~fD~v~~~~~-~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 97 KLKEILQDKKIDIILSDAA-VPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp HHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred HHHhhcCCCcccEEEeCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 56789999999865 4442 122 137899999999999999977643
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.8e-10 Score=110.56 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC-CCC--CCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-PYP--SLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-pfp--d~sFDlV~~s 324 (667)
..+|||||||+|.++..+++.. ....|+++|.++.+++.|+++ ++ .+.+..+++... +.. +++||+|++.
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 4799999999999999999873 246799999999999988765 44 366777776653 433 5789999987
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.. . .+...++.++.++|||||++++.+.
T Consensus 134 ~~-~---~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 134 AA-K---GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GG-G---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CC-H---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 55 2 3567899999999999999999865
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-10 Score=121.02 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=80.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..++++. ....++++|. +.+++.|++. ..+.+..+|+.. ++++ ||+|++..++++| +
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~-~ 281 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNW-S 281 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGGGS-C
T ss_pred CCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccccC-C
Confidence 35799999999999999999885 3467889999 8999877653 346778888776 6765 9999999985555 4
Q ss_pred CHH--HHHHHHHhcccCCeEEEEEeCC
Q 005959 333 KDG--ILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 333 d~~--~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.. .+|++++++|||||++++.++.
T Consensus 282 d~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 282 DEKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 555 8999999999999999998754
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.6e-10 Score=117.49 Aligned_cols=101 Identities=23% Similarity=0.339 Sum_probs=80.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..+++.. ....++++|. +.+++.|+++ ++ .+.+..+|+.. +++. .||+|++..+
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 258 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV 258 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred cCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence 34799999999999999999874 3467899999 8899888754 34 46777777654 4554 4999999998
Q ss_pred ccccccCH-HHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++++.+.. ..+++++.++|||||++++.++.
T Consensus 259 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 259 LLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 66654322 47999999999999999999886
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.4e-10 Score=117.41 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=81.5
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+|||||||+|.++..++++. +...++++|. +.+++.|+++- ..+.+..+|... +++ ++||+|++..+++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGG
T ss_pred CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhcc
Confidence 799999999999999999873 3457899999 99998887652 246777788766 666 6899999999866
Q ss_pred ccccCH-HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 329 DWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 329 ~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+|.++. ..+++++.++|+|||++++.++..
T Consensus 245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 245 DLDEAASLRLLGNCREAMAGDGRVVVIERTI 275 (334)
T ss_dssp GCCHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 664322 489999999999999999998754
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.3e-10 Score=122.41 Aligned_cols=102 Identities=16% Similarity=0.046 Sum_probs=76.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH-------HHc----C---CCceEEeecccCC--CC--CC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT-------LER----G---LPAMIGSFASKQL--PY--PS 315 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A-------~er----g---l~~~~~~~da~~L--pf--pd 315 (667)
..+|||||||+|.++..+++.. ....|+|+|.++.+++.| +++ | .++.+..++.... ++ ..
T Consensus 243 g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~ 321 (433)
T 1u2z_A 243 GDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI 321 (433)
T ss_dssp TCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred CCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccccc
Confidence 4799999999999999999862 234699999999998877 443 4 2455655543322 22 24
Q ss_pred CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 316 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++||+|+++..+ +.++...+|.++.++|||||.+++.++..
T Consensus 322 ~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 322 PQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp GGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred CCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence 689999997653 34667788999999999999999987543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-09 Score=113.62 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=80.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccc--
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC-- 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~-- 326 (667)
+.+|||+|||+|..+..+++.......|+++|.++.+++.++++ ++ ++.+.++|+..++..+++||+|++...
T Consensus 119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcs 198 (315)
T 1ixk_A 119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT 198 (315)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCC
Confidence 47999999999999999998632346799999999999887654 55 567788888887765678999998421
Q ss_pred ---ccccccC----------------HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 ---GVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 ---ll~~~~d----------------~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.++..++ ...+|.++.++|||||++++++....
T Consensus 199 g~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~ 250 (315)
T 1ixk_A 199 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 250 (315)
T ss_dssp STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred CcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 1221111 14789999999999999999887544
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=108.73 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..+++. ...++++|.++.+++.|+++ ++ ++.+...++....+++++||+|++..
T Consensus 92 ~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-- 166 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV-- 166 (248)
T ss_dssp TCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS--
T ss_pred CCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC--
Confidence 379999999999999999987 35799999999999988765 33 45677777766543667899999842
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+++..++.++.++|+|||.+++..+.
T Consensus 167 ----~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 167 ----REPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp ----SCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ----cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 35567899999999999999999885
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.1e-10 Score=116.25 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=79.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccCCCC--CCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPY--PSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~Lpf--pd~sFDlV 321 (667)
.+.+|||||||+|.++..+++.. ....++++|+++.+++.|+++. ..+.+..+|+..++. ++++||+|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 45799999999999999999762 3467999999999999988653 346677778766554 47899999
Q ss_pred EecccccccccCH----HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 322 HCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 322 ~~s~~ll~~~~d~----~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++... .++.+.. ..+++++.++|||||++++....+
T Consensus 174 i~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 213 (304)
T 3bwc_A 174 IIDTT-DPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI 213 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred EECCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence 99754 3332222 579999999999999999987643
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.01 E-value=5.5e-10 Score=110.19 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCC-C-CC----CCCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQL-P-YP----SLSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~L-p-fp----d~sFDlV 321 (667)
+.+|||||||+|.++..+++.-.....|+++|.++.+++.|+++ ++. +.+..+++... + +. .++||+|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 47999999999999999998622246799999999999888765 443 66777776432 2 11 1789999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++... ..+...++.++.++|||||++++.+..
T Consensus 145 ~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 145 YIDAD----KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EECSC----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 97542 345678999999999999999998765
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.8e-10 Score=119.75 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=82.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..++++. +...++++|. +.+++.+++. ..+.+..+|+.. |++++ |+|++..++++|.+
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSD 276 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGBCH
T ss_pred CCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcCCH
Confidence 45799999999999999999874 4567899999 8888877654 367788888776 77764 99999999666754
Q ss_pred CH-HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 333 KD-GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 333 d~-~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+. .++|++++++|||||++++.+....
T Consensus 277 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 277 EHCLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 32 4799999999999999999987643
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.4e-10 Score=118.86 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=82.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..++++. +...++++|. +.+++.|++. ..+.+..+|+.. |++++ |+|++..++++|.+
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d 274 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWSD 274 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSCH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCCH
Confidence 45799999999999999999873 4567899999 8888777654 467788888877 78764 99999999667753
Q ss_pred C-HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 333 K-DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 333 d-~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+ ...+|++++++|||||++++.+....
T Consensus 275 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 275 QHCATLLKNCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 3 35799999999999999999987643
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.8e-10 Score=107.68 Aligned_cols=98 Identities=11% Similarity=0.052 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CCCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lpfpd~sFDlV~~s~~ 326 (667)
..+|||||||+|..+..+++.......++++|.++.+++.|+++ ++ .+.+..+++.. ++..++ ||+|++...
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~ 135 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD 135 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence 47999999999999999988632246799999999999988754 33 35667777654 355456 999998732
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..+...++.++.++|||||++++.+.
T Consensus 136 ----~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 136 ----VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp ----TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred ----hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 34567899999999999999999764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.00 E-value=8e-10 Score=111.50 Aligned_cols=104 Identities=15% Similarity=0.017 Sum_probs=76.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC-CceeEEEEecCCHHHHHHHHHc---C----C--C----------------------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER---G----L--P---------------------- 300 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g-~~~~sV~gvD~S~~ml~~A~er---g----l--~---------------------- 300 (667)
...+|||+|||+|.++..+++.. .....|+++|+++.+++.|+++ . + .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 34789999999999999998761 1356799999999999988743 1 1 1
Q ss_pred ---ce-------------EEeecccCCCC-----CCCCccEEEecccccccc--------cCHHHHHHHHHhcccCCeEE
Q 005959 301 ---AM-------------IGSFASKQLPY-----PSLSFDMLHCARCGVDWD--------QKDGILLLEVDRVLKPGGYF 351 (667)
Q Consensus 301 ---~~-------------~~~~da~~Lpf-----pd~sFDlV~~s~~ll~~~--------~d~~~~L~Ei~RvLKPGG~L 351 (667)
+. +.++|+..... ..++||+|+|+...++.. +....++.++.++|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 33 77777655321 345899999986533322 12347999999999999999
Q ss_pred EEEeC
Q 005959 352 VWTSP 356 (667)
Q Consensus 352 vis~p 356 (667)
+++..
T Consensus 211 ~~~~~ 215 (250)
T 1o9g_A 211 AVTDR 215 (250)
T ss_dssp EEEES
T ss_pred EEeCc
Confidence 99554
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.5e-10 Score=118.73 Aligned_cols=100 Identities=12% Similarity=0.133 Sum_probs=80.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..++++. +...++++|. +.|++.|++.. .+.+..+|+.. ++++ ||+|++..++++| +
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~-~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~-~ 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGSN-NLTYVGGDMFT-SIPN--ADAVLLKYILHNW-T 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCBT-TEEEEECCTTT-CCCC--CSEEEEESCGGGS-C
T ss_pred cCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccCC-CcEEEeccccC-CCCC--ccEEEeehhhccC-C
Confidence 45799999999999999999873 3457999999 99998876542 46777788755 6663 9999999986666 4
Q ss_pred CHH--HHHHHHHhcccC---CeEEEEEeCCCC
Q 005959 333 KDG--ILLLEVDRVLKP---GGYFVWTSPLTN 359 (667)
Q Consensus 333 d~~--~~L~Ei~RvLKP---GG~Lvis~p~~~ 359 (667)
+.. .+|+++.++||| ||++++.++...
T Consensus 261 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 292 (352)
T 1fp2_A 261 DKDCLRILKKCKEAVTNDGKRGKVTIIDMVID 292 (352)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence 444 899999999999 999999987543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.9e-10 Score=117.46 Aligned_cols=104 Identities=14% Similarity=0.213 Sum_probs=82.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC-CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp-fpd~sFDlV~~s~~ 326 (667)
..+|||||||+|.++..++++. +...++++|. +.+++.++++ ++ .+.+..+|....+ +..+.||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 5899999999999999999873 3467899999 7788877654 33 3667778877765 23457999999998
Q ss_pred ccccccC-HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 GVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 ll~~~~d-~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+++|.++ ...+|+++.++|||||++++.++...
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (352)
T 3mcz_A 258 LHYFDAREAREVIGHAAGLVKPGGALLILTMTMN 291 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 6666432 36899999999999999999986543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=116.04 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=76.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH--cC--CCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--RG--LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e--rg--l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
...+|||||||+|.++..++++. +...++++|.+ .++..++. .+ ..+.+..+|+. .++| +||+|++..+++
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh 258 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRILH 258 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCGG
T ss_pred CCceEEEECCccCHHHHHHHHHC-CCCEEEEecCH-HHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhcc
Confidence 35799999999999999999874 45678999994 44441110 12 23667777875 4555 899999999866
Q ss_pred ccccCH-HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 329 DWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 329 ~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+|.+.. ..+|++++++|||||+|++.+....
T Consensus 259 ~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 290 (348)
T 3lst_A 259 NWGDEDSVRILTNCRRVMPAHGRVLVIDAVVP 290 (348)
T ss_dssp GSCHHHHHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 664322 5899999999999999999987543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.9e-10 Score=110.15 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=80.6
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEee
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF 306 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~ 306 (667)
.....+.+.+...+ ..+|||||||+|.++..+++.+. ..++++|.++.+++.|+++ ++ ++.+..+
T Consensus 78 ~~~~~~~~~l~~~~--------~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~ 147 (235)
T 1jg1_A 78 HMVAIMLEIANLKP--------GMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILG 147 (235)
T ss_dssp HHHHHHHHHHTCCT--------TCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHhcCCCC--------CCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEC
Confidence 34445555554433 37899999999999999998742 5689999999999988764 33 4566666
Q ss_pred cccCCCCCCC-CccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 307 ASKQLPYPSL-SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 307 da~~Lpfpd~-sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+. ..+++++ .||+|++..++.++. .++.++|||||.+++..+..
T Consensus 148 d~-~~~~~~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 148 DG-SKGFPPKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp CG-GGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEECSS
T ss_pred Cc-ccCCCCCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEecC
Confidence 75 4556554 499999997744332 37899999999999998743
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-09 Score=107.34 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC-C-CC---CCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-YP---SLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-p-fp---d~sFDlV~ 322 (667)
+.+|||||||+|.++..+++.......++++|.++.+++.|+++ ++ .+.+..+++... + ++ .++||+|+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 47999999999999999998732245799999999999888754 44 356777776442 1 11 25799999
Q ss_pred ecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+... ......++.++.++|||||++++.+..
T Consensus 139 ~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 139 IDAD----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp ECSC----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EcCC----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 8744 234568999999999999999988764
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-09 Score=108.83 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..+++.. ....++++|+|+.+++.|+++ ++ ++.+..+|... ++++++||+|+++...+
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred CCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCCC
Confidence 4689999999999999998652 345799999999999988765 44 46677777655 34467899999984311
Q ss_pred c------------cc------------cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 D------------WD------------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~------------~~------------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. +. .....++.++.++|||||++++....
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~ 240 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW 240 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1 11 12357899999999999999998653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=111.10 Aligned_cols=97 Identities=22% Similarity=0.179 Sum_probs=79.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..+++.-.+...++++|.++.+++.|+++ ++ .+.+...|+... +++++||+|++..
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~~-- 189 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLDV-- 189 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEECC--
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEECC--
Confidence 37999999999999999998722345799999999999988765 43 456777777666 6778999999852
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+++..++.++.++|+|||.+++.++.
T Consensus 190 ----~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 190 ----PDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp ----SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred ----cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 45567999999999999999999874
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=115.80 Aligned_cols=98 Identities=17% Similarity=0.073 Sum_probs=74.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------------CCceEEeecccCC--CCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------------LPAMIGSFASKQL--PYPS 315 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------------l~~~~~~~da~~L--pfpd 315 (667)
+.+|||+|||+|.++..+++.......++++|.++.+++.|+++. .++.+..+|+..+ ++++
T Consensus 106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS 185 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCC
Confidence 379999999999999999987212357999999999999887641 2466777888776 5677
Q ss_pred CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 316 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++||+|++... ++..++.++.++|||||.|++..+.
T Consensus 186 ~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 186 LTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp --EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 88999998632 2334899999999999999998874
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=107.26 Aligned_cols=99 Identities=15% Similarity=0.055 Sum_probs=73.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCceEEeecccCCC---CCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLP---YPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~Lp---fpd~sFDlV~~s~~ 326 (667)
...+|||+|||+|.++..+++.......++++|.++.|++.++++ ..++.+..+|+.... ...++||+|++...
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 152 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence 457999999999999999997621224789999999998777543 235667777776632 12358999998744
Q ss_pred ccccccCH-HHHHHHHHhcccCCeEEEEEe
Q 005959 327 GVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 327 ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.++. ..++.++.++|||||++++..
T Consensus 153 ----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 153 ----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp ----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2333 345999999999999999983
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-09 Score=110.37 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecC-CHHHHHHHHHcC---------C------CceEEeecccCCC--C-
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA-SGSQVQLTLERG---------L------PAMIGSFASKQLP--Y- 313 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~-S~~ml~~A~erg---------l------~~~~~~~da~~Lp--f- 313 (667)
...+|||||||+|.++..+++.+. ..|+++|. ++.+++.|+++. + ++.+..++..... +
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 347999999999999999998753 36999999 899998886542 1 2334433322211 1
Q ss_pred ---CCCCccEEEecccccccccCHHHHHHHHHhccc---C--CeEEEEEeC
Q 005959 314 ---PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLK---P--GGYFVWTSP 356 (667)
Q Consensus 314 ---pd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLK---P--GG~Lvis~p 356 (667)
++++||+|+++.+ +++.++...++.++.++|+ | ||.+++...
T Consensus 157 ~~~~~~~fD~Ii~~dv-l~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADL-LSFHQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp HHHSCSSBSEEEEESC-CSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred hhccCCCCCEEEEeCc-ccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 3578999999888 4446677889999999999 9 998877543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-10 Score=118.09 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-------CceEE--eecccCCCCCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------PAMIG--SFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-------~~~~~--~~da~~Lpfpd~sFDlV~~ 323 (667)
+..+|||||||+|.++..++++ ..|+++|+++ |+..++++.. ++.+. ++|+..+| +++||+|+|
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC 154 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence 3479999999999999999987 3589999998 6544433322 45677 78888776 679999999
Q ss_pred cccccccccC----HH---HHHHHHHhcccCCe--EEEEEeCCC
Q 005959 324 ARCGVDWDQK----DG---ILLLEVDRVLKPGG--YFVWTSPLT 358 (667)
Q Consensus 324 s~~ll~~~~d----~~---~~L~Ei~RvLKPGG--~Lvis~p~~ 358 (667)
..+ ++..+ .. .+|.++.++||||| .|++.++.+
T Consensus 155 d~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~ 196 (276)
T 2wa2_A 155 DIG--ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNP 196 (276)
T ss_dssp CCC--CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred CCC--cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCC
Confidence 865 22211 11 37899999999999 999987763
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=107.82 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=74.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCc-----eeEEEEecCCHHHHHHHHHcC----------CCceEEeecccCCCCCC-CC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELL-----TMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPS-LS 317 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~-----~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~Lpfpd-~s 317 (667)
..+|||||||+|.++..+++..-. ...|+++|.++.+++.|+++. .++.+..+|... ++++ ++
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~ 163 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAP 163 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCS
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCC
Confidence 479999999999999999875211 137999999999998887641 256677777766 5554 78
Q ss_pred ccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 318 FDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 318 FDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
||+|++...+.+ . +.++.++|||||++++....
T Consensus 164 fD~I~~~~~~~~-~------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 164 YNAIHVGAAAPD-T------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEEEECSCBSS-C------CHHHHHTEEEEEEEEEEESC
T ss_pred ccEEEECCchHH-H------HHHHHHHhcCCCEEEEEEec
Confidence 999999977433 2 26889999999999998764
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-09 Score=114.55 Aligned_cols=103 Identities=17% Similarity=0.027 Sum_probs=82.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..++..+.....++++|+++.|++.|+++ ++ .+.+.++|+..++.+.++||+|+++.. +
T Consensus 204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npP-y 282 (354)
T 3tma_A 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPP-H 282 (354)
T ss_dssp TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCC-S
T ss_pred CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCC-C
Confidence 47899999999999999998642235689999999999988764 44 578889999999888888999999744 2
Q ss_pred cc-c-------cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DW-D-------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~-~-------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.. . .....++.++.++|||||.+++.++.
T Consensus 283 g~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 283 GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp CC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred cCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 21 1 11257899999999999999998873
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.5e-10 Score=115.92 Aligned_cols=96 Identities=17% Similarity=0.099 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-------CceEE--eecccCCCCCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------PAMIG--SFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-------~~~~~--~~da~~Lpfpd~sFDlV~~ 323 (667)
+..+|||||||+|.++..++++ ..|+++|+++ |+..++++.. ++.+. ++|+..++ +++||+|+|
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~s 146 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMC 146 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEE
Confidence 3479999999999999999987 3589999998 6433322222 45667 78887766 679999999
Q ss_pred cccccccccCH----H---HHHHHHHhcccCCe--EEEEEeCC
Q 005959 324 ARCGVDWDQKD----G---ILLLEVDRVLKPGG--YFVWTSPL 357 (667)
Q Consensus 324 s~~ll~~~~d~----~---~~L~Ei~RvLKPGG--~Lvis~p~ 357 (667)
..+ ++..+. . .+|.++.++||||| .|++.++.
T Consensus 147 d~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 147 DVG--ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCC--CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred eCc--ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 855 222111 1 37899999999999 99998876
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5.8e-10 Score=126.68 Aligned_cols=102 Identities=15% Similarity=0.038 Sum_probs=80.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCceEEeecccCC--CCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQL--PYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~L--pfpd~sFDlV~~s~ 325 (667)
.+.+|||||||.|.++..|+++|. .|+|+|.++.+|+.|+.+ + +++.+.+++++++ ++++++||+|+|..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga---~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA---TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC---EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 346999999999999999999974 589999999999888643 3 5678888898887 57788999999999
Q ss_pred cccccccCHH--HHHHHHHhcccCCeEEEEEeCCC
Q 005959 326 CGVDWDQKDG--ILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 326 ~ll~~~~d~~--~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++.| .+++. ..+..+.+.|+++|..++.....
T Consensus 143 ~~eh-v~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 143 VFHH-IVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp CHHH-HHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred chhc-CCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 8555 44553 34556778888888777665443
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.9e-09 Score=111.67 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=78.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccCC-C-CCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-P-YPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~L-p-fpd~sFDlV 321 (667)
.+.+|||||||+|.++..++++. ....|+++|+++.+++.|+++. ..+.+..+|+... + +++++||+|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 45799999999999999999872 3568999999999999988642 2466777776543 2 346799999
Q ss_pred Eecccccccc--cC--HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 322 HCARCGVDWD--QK--DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 322 ~~s~~ll~~~--~d--~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++... .++. .. ...+++++.++|+|||+|++....
T Consensus 199 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 199 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99643 2221 11 257999999999999999997543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-09 Score=107.23 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=76.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccC-CC--------------
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LP-------------- 312 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~-Lp-------------- 312 (667)
..+|||||||+|.++..+++.......++++|.++.+++.|+++ +.. +.+..+++.. ++
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 47999999999999999998732245799999999999988765 432 5566666533 12
Q ss_pred CCC--CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 313 YPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 313 fpd--~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|++ ++||+|++... .++...++.++.++|||||++++.+.
T Consensus 141 f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred ccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 333 78999998744 24456899999999999999999864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.3e-09 Score=100.13 Aligned_cols=95 Identities=8% Similarity=0.041 Sum_probs=72.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||+|||+|.++..+++.+ ...++++|+++.+++.|+++..++.+.++|+..++ ++||+|+++..+.++..
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 34799999999999999999874 34699999999999999887556788888888875 68999999977444332
Q ss_pred C-HHHHHHHHHhcccCCeEEEEE
Q 005959 333 K-DGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 333 d-~~~~L~Ei~RvLKPGG~Lvis 354 (667)
. ...+++++.++| |+.+++.
T Consensus 126 ~~~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 126 HSDRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp --CHHHHHHHHHHE--EEEEEEE
T ss_pred chhHHHHHHHHHhc--CcEEEEE
Confidence 1 246899999998 5544444
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-09 Score=120.68 Aligned_cols=98 Identities=21% Similarity=0.213 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..+++.+ ...|+++|.++ |++.|+++ ++ .+.+..+++..++++ ++||+|+|+..
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~--~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~ 233 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 233 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTT--CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred CCCEEEEecCcccHHHHHHHHcC--CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCc
Confidence 34799999999999999998864 45799999998 88777653 44 467888888888776 48999999866
Q ss_pred ccccc-cCHHHHHHHHHhcccCCeEEEEE
Q 005959 327 GVDWD-QKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 327 ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
.+++. ++....+.++.++|||||++++.
T Consensus 234 ~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 234 GYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred hHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 45544 33356778999999999999853
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.2e-10 Score=113.39 Aligned_cols=100 Identities=7% Similarity=-0.037 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC-CCC-----CCCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-PYP-----SLSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-pfp-----d~sFDlV 321 (667)
+.+|||||||+|..+..|++.......|+++|.++.+++.|+++ ++ .+.+..+++... +.. +++||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 47999999999999999998632246799999999988665543 44 466777776543 221 4789999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++... ..+...++.++.++|||||++++.+..
T Consensus 141 ~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 141 FIDAD----KTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEESC----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEcCC----hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 98743 345567999999999999999997654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-09 Score=102.44 Aligned_cols=99 Identities=16% Similarity=0.067 Sum_probs=70.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCce--------eEEEEecCCHHHHHHHHHcCCCceEE-eecccCCC--------CCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLT--------MCIANYEASGSQVQLTLERGLPAMIG-SFASKQLP--------YPSL 316 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~--------~sV~gvD~S~~ml~~A~ergl~~~~~-~~da~~Lp--------fpd~ 316 (667)
..+|||||||+|.++..++++.... ..|+++|.++.+ ....+.+. .+|+...+ ++++
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTDPRTSQRILEVLPGR 96 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTSHHHHHHHHHHSGGG
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCCHHHHHHHHHhcCCC
Confidence 4799999999999999999872111 579999999732 01234566 66655433 3456
Q ss_pred CccEEEecccc---cccccCH-------HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 317 SFDMLHCARCG---VDWDQKD-------GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 317 sFDlV~~s~~l---l~~~~d~-------~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+||+|+|..+. .++..+. ..++.++.++|||||.|++.++..
T Consensus 97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 89999996531 1222222 378999999999999999987743
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-09 Score=106.05 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeeccc----CCCCCC--CCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK----QLPYPS--LSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~----~Lpfpd--~sFDlV 321 (667)
+.+|||||||+|..+..+++.......++++|.++.+++.|+++ ++ .+.+..+++. .++..+ ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 47999999999999999998632245799999999999988754 44 3556666643 233444 789999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++... ..+...++.++.++|+|||++++.+..
T Consensus 153 ~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 153 FIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EECSC----GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 98743 345578999999999999999998654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.2e-09 Score=111.80 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=79.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCceEEeecccC-CCCCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQ-LPYPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~-Lpfpd~sFDlV 321 (667)
.+.+|||||||+|.++..++++. ....++++|+++.+++.|+++- ..+.+..+|+.. ++..+++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 35799999999999999999862 3467999999999999987642 245677777655 34456799999
Q ss_pred Eeccccccc---cc--C--HHHHHHHHHhcccCCeEEEEEeC
Q 005959 322 HCARCGVDW---DQ--K--DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 322 ~~s~~ll~~---~~--d--~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++... .++ .+ . ...+++++.++|||||.+++...
T Consensus 156 i~d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99855 444 21 1 25799999999999999999753
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-09 Score=112.48 Aligned_cols=102 Identities=11% Similarity=0.022 Sum_probs=78.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---ceEEeecccCCCC----CCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPY----PSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~Lpf----pd~sFDlV~ 322 (667)
..+|||+|||+|.++..+++.+. .|+++|.|+.+++.|+++ ++. +.+.++|+..+.. .+++||+|+
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 36999999999999999998863 699999999999988764 443 6777777765432 156899999
Q ss_pred ecccc---------cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCG---------VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~l---------l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+..-. .++..+...++.++.++|+|||+|++.....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 95321 1223445689999999999999988876543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.89 E-value=4e-09 Score=111.60 Aligned_cols=100 Identities=15% Similarity=0.075 Sum_probs=77.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----CCceEEeecccCC--CCCCCCccEEEecccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQL--PYPSLSFDMLHCARCG 327 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----l~~~~~~~da~~L--pfpd~sFDlV~~s~~l 327 (667)
.+|||||||+|.++..++++. ....++++|+++.+++.|++.. ..+.+..+|+... .+++++||+|++...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~- 168 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF- 168 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS-
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC-
Confidence 499999999999999999852 3447999999999999998763 2456777776554 345689999999643
Q ss_pred cccc-cC---HHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWD-QK---DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~-~d---~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+.. +. ...++++++++|+|||+|++...
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 2221 11 15799999999999999998765
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.89 E-value=8.5e-09 Score=106.62 Aligned_cols=103 Identities=11% Similarity=0.078 Sum_probs=78.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+.+|||||||+|.++..++++ .....++++|+++.+++.|++.. ..+.+..+|+.. ++..+++||+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhC-CCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3579999999999999999987 23467999999999999998642 245677777554 344467999999
Q ss_pred ecccccccccC----HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 323 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 323 ~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+... .++.+. ...+++++.++|+|||.+++....
T Consensus 154 ~d~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 154 VDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp ESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred ECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 9744 332221 257999999999999999998643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.3e-09 Score=110.10 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=78.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+.+|||||||+|.++..++++. ....++++|+++.+++.|+++. .++.+..+|+.. ++..+++||+|+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 34799999999999999999762 3567999999999999998753 235566676544 333457899999
Q ss_pred eccccccccc--CH--HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGVDWDQ--KD--GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll~~~~--d~--~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+... .++.+ .. ..+++++.++|+|||++++.....
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 233 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 233 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 8743 22221 11 579999999999999999986543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.9e-09 Score=110.11 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=75.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+.+|||||||+|.++..++++. ....++++|+++.+++.|+++- ..+.+..+|+.. ++..+++||+|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 34799999999999999999873 4568999999999999998753 235566666654 334567899999
Q ss_pred ecccccccccCH----HHHHHHHHhcccCCeEEEEEeC
Q 005959 323 CARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll~~~~d~----~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+... .++.+.. ..+++++.++|+|||.+++...
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 8753 3332221 5789999999999999999863
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.1e-09 Score=107.86 Aligned_cols=103 Identities=15% Similarity=0.034 Sum_probs=77.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+.+|||||||+|.++..++++. ....++++|+++.+++.|+++. .++.+..+|+.. ++..+++||+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 34799999999999999999872 3467999999999999887652 245677777544 344567899999
Q ss_pred eccccccccc-----CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 323 CARCGVDWDQ-----KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 323 ~s~~ll~~~~-----d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+... .++.. ....+++++.++|+|||.+++....
T Consensus 169 ~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 169 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 8633 22111 1257999999999999999998654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.2e-09 Score=107.11 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=79.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+.+|||||||+|.++..+++.. ....++++|+++.+++.|++.- .++.+..+|+.. ++..+++||+|+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 45799999999999999999773 3568999999999999998752 235667677654 233367899999
Q ss_pred ecccccccccCH----HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll~~~~d~----~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+... .++.+.. ..+++++.++|+|||.+++....+
T Consensus 157 ~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~ 195 (283)
T 2i7c_A 157 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 195 (283)
T ss_dssp EECC-CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 9643 3332221 579999999999999999986543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.2e-09 Score=110.65 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------CCCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---------gl~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+.+|||||||+|.++..++++. ....++++|+++.+++.|+++ ..++.+..+|+.. ++..+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 45799999999999999999873 356799999999999998864 2345667777654 445567999999
Q ss_pred ecccccccccC----HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 323 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 323 ~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+... .++.+. ...+++++.++|+|||.+++....
T Consensus 174 ~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 174 TDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ECCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 9644 332211 236899999999999999998743
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.1e-09 Score=107.97 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CCC------CCCCccE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPY------PSLSFDM 320 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lpf------pd~sFDl 320 (667)
+.+|||||||+|..+..+++.......++++|.++.+++.|+++ ++ .+.+..+++.. ++. ++++||+
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 47999999999999999998632246799999999999888754 44 35566677644 232 2578999
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|++... ..+...++.++.++|||||++++.+.
T Consensus 160 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 160 IFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp EEECSC----STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred EEEcCc----hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 998743 34567899999999999999998764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.6e-09 Score=108.15 Aligned_cols=106 Identities=18% Similarity=0.112 Sum_probs=80.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCC----CCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY----PSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpf----pd~sFDlV~~s 324 (667)
+.+|||+|||+|..+..+++.......|+++|.++.+++.++++ ++ ++.+..+|+..++. .+++||+|++.
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d 163 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLD 163 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEc
Confidence 47999999999999999998522235799999999999887654 44 56677778777654 36789999986
Q ss_pred ccc-----cc------------cccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 325 RCG-----VD------------WDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 325 ~~l-----l~------------~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
... ++ .......++.++.++|||||++++++....
T Consensus 164 ~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 164 APCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp ECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred CCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 210 11 113446799999999999999999987554
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-09 Score=113.69 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=79.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..++++. +...++++|. +.+++.+++. ..+.+..+|+.. +++ +||+|++..++++| +
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~-~ 265 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHDW-N 265 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGGS-C
T ss_pred CCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccCC-C
Confidence 34799999999999999999874 3457899999 7888776542 246777778766 666 49999999985555 4
Q ss_pred CHH--HHHHHHHhcccC---CeEEEEEeCCC
Q 005959 333 KDG--ILLLEVDRVLKP---GGYFVWTSPLT 358 (667)
Q Consensus 333 d~~--~~L~Ei~RvLKP---GG~Lvis~p~~ 358 (667)
+.. .+|+++.++||| ||++++.++..
T Consensus 266 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 266 DEQSLKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp HHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 544 899999999999 99999988754
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=112.77 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=81.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--CCCCCccEEEec--
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCA-- 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--fpd~sFDlV~~s-- 324 (667)
+.+|||+|||+|..+..+++.......|+++|.++.+++.++++ |+ ++.+..+|+..++ +++++||+|++.
T Consensus 260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~P 339 (450)
T 2yxl_A 260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAP 339 (450)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECC
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCC
Confidence 47999999999999999998632235799999999999887655 55 5677788887776 666789999962
Q ss_pred ---ccccccccCH----------------HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 325 ---RCGVDWDQKD----------------GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 325 ---~~ll~~~~d~----------------~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
...++..++. ..+|.++.++|||||++++++.....
T Consensus 340 csg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~ 394 (450)
T 2yxl_A 340 CTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK 394 (450)
T ss_dssp CCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred CCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2223322222 46899999999999999999876543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.9e-09 Score=113.43 Aligned_cols=96 Identities=22% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC--CceEEeecccCCCCCCCCccEEEeccc-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL--PAMIGSFASKQLPYPSLSFDMLHCARC- 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl--~~~~~~~da~~Lpfpd~sFDlV~~s~~- 326 (667)
..+|||||||+|.++..+++.|. ..|+++|.|+ |++.|++ .++ .+.+..++++.+.++ +.||+|+|...
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~ 159 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA--RRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMG 159 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCB
T ss_pred CCEEEEeCCCccHHHHHHHHhCC--CEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccc
Confidence 47899999999999999888874 4689999985 6666653 354 366788888888887 58999999532
Q ss_pred -ccccccCHHHHHHHHHhcccCCeEEEE
Q 005959 327 -GVDWDQKDGILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 327 -ll~~~~d~~~~L~Ei~RvLKPGG~Lvi 353 (667)
.+.+......++....|.|||||.++.
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccchhhhHHHHHHhhCCCCceECC
Confidence 123334567889999999999999873
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-09 Score=104.28 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=76.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC-C-CCC----CCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-YPS----LSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-p-fpd----~sFDlV 321 (667)
..+|||||||+|.++..+++.......++++|.++.+++.|+++ ++ .+.+..+++... + +++ ++||+|
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 47999999999999999998632246799999999999888764 43 456666665432 1 211 689999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++... ..+...++.++.++|+|||++++.+..
T Consensus 150 ~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 150 VVDAD----KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp EECSC----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 98743 344568999999999999999997653
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.8e-09 Score=105.75 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=80.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
...+|||+|||+|.++..+++.+ ....|+++|.++.+++.|+++ ++ ++.+..+|+..++. +++||+|++....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 34799999999999999999873 245799999999999888753 43 45678888887744 6789999988652
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
....++.++.++|+|||.+++++...
T Consensus 197 -----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 -----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp -----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred -----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 45678999999999999999988754
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.85 E-value=8.1e-10 Score=111.46 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCC---CCC---CCCccE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQL---PYP---SLSFDM 320 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~L---pfp---d~sFDl 320 (667)
...+|||+|||+|.++..++++. ....++++|+++.|++.|+++ ++. +.+..+|+... +++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 35799999999999999988762 235799999999999988754 443 67777776652 455 368999
Q ss_pred EEecccccccc--------------cCHHHHHHHHHhcccCCeEEEEEe
Q 005959 321 LHCARCGVDWD--------------QKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 321 V~~s~~ll~~~--------------~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
|+|+...++.. .....++.++.|+|||||.+.+..
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~ 192 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK 192 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence 99985533221 011245778999999999887653
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=106.05 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=74.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCc---cEEEecc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSF---DMLHCAR 325 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sF---DlV~~s~ 325 (667)
.+|||+|||+|.++..+++. ....|+++|+|+.+++.|+++ ++. +.+.++|... +++ ++| |+|+++.
T Consensus 125 ~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnP 200 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNP 200 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECC
T ss_pred CEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcC
Confidence 68999999999999999987 456799999999999988764 443 6777777665 233 479 9999972
Q ss_pred cccc----------cc--------cCHHHHHHHHH-hcccCCeEEEEEeC
Q 005959 326 CGVD----------WD--------QKDGILLLEVD-RVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~ll~----------~~--------~d~~~~L~Ei~-RvLKPGG~Lvis~p 356 (667)
-.+. +. .+...+++++. +.|+|||++++...
T Consensus 201 Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 201 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 2110 11 11226899999 99999999998654
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8e-09 Score=106.99 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=75.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------------CCceEEeecccC-CCCCCC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQ-LPYPSL 316 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------------l~~~~~~~da~~-Lpfpd~ 316 (667)
.+.+|||||||+|.++..++++ ....++++|+++.+++.|++.- ..+.+..+|+.. ++. ++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 3479999999999999999987 3568999999999999988652 234566666543 222 57
Q ss_pred CccEEEeccccccccc--C--HHHHHHHHHhcccCCeEEEEEeC
Q 005959 317 SFDMLHCARCGVDWDQ--K--DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 317 sFDlV~~s~~ll~~~~--d--~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+||+|++... .++.+ . ...+++++.++|+|||.+++...
T Consensus 152 ~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 152 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 8999998754 33221 1 25689999999999999999754
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=104.90 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccCCCCCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~Lpfpd~sFDlV~~ 323 (667)
.+.+|||||||+|.++..++++ . ..++++|+++.+++.|++.- ..+.+..+|+.... ++||+|++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEE
Confidence 3579999999999999999987 3 68999999999999887542 23566667766554 78999998
Q ss_pred cccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.. .++..+++++.++|+|||.+++...
T Consensus 146 d~------~dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 146 LQ------EPDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp SS------CCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CC------CChHHHHHHHHHhcCCCcEEEEEcC
Confidence 72 2345699999999999999999754
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-09 Score=113.79 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecC----CHHHHHHHHHc--C-CCceEEee-cccCCCCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA----SGSQVQLTLER--G-LPAMIGSF-ASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~----S~~ml~~A~er--g-l~~~~~~~-da~~Lpfpd~sFDlV~~s 324 (667)
+..+|||||||+|.++..+++++ .|+++|. ++.+++.+..+ + ..+.+.++ |+..++ .++||+|+|.
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd 155 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCD 155 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEEC
Confidence 34799999999999999999872 4788888 45443222111 1 13456666 665554 5689999997
Q ss_pred cccc--ccccCHH---HHHHHHHhcccCCeEEEEEeCCC
Q 005959 325 RCGV--DWDQKDG---ILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 325 ~~ll--~~~~d~~---~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+.. ++..+.. .+|.++.++|||||.|++..+..
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 5521 2222222 47899999999999999987754
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-08 Score=105.99 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCC-CCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPY-PSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpf-pd~sFDlV~~s~ 325 (667)
.+.+|||+| |+|.++..++..+. ...|+++|+++.|++.|+++ ++ ++.+..+|+.. +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 357999999 99999999988753 25799999999999988765 55 67788888887 764 457899999986
Q ss_pred cccccccCHHHHHHHHHhcccCCeE-EEEEeC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGY-FVWTSP 356 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~-Lvis~p 356 (667)
. ++... ...++.++.++|||||. ++++..
T Consensus 250 p-~~~~~-~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 P-ETLEA-IRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp C-SSHHH-HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred C-CchHH-HHHHHHHHHHHcccCCeEEEEEEe
Confidence 5 33222 46799999999999994 455554
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-08 Score=105.80 Aligned_cols=103 Identities=20% Similarity=0.191 Sum_probs=82.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----CCceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----l~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
...+|||||||+|.++..++++. +...++..|. +.+++.|+++- -++.+..+|+...|.+ .+|+|++..++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vl 254 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVL 254 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSG
T ss_pred cCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeec
Confidence 44799999999999999999884 5567788887 78888887652 2466777887665555 47999999997
Q ss_pred cccccCH-HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 328 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 328 l~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
++|.++. .++|++++++|+|||.++|.+....
T Consensus 255 h~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~ 287 (353)
T 4a6d_A 255 HDWADGKCSHLLERIYHTCKPGGGILVIESLLD 287 (353)
T ss_dssp GGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred ccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence 7776433 4789999999999999999987654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=99.71 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=70.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCC-----------CCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-----------SLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfp-----------d~sFDlV~ 322 (667)
..+|||+|||+|.++..++++ ...|+++|+++.. ....+.+.++|+...+.. .++||+|+
T Consensus 26 g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vl 96 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVV 96 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEe
Confidence 479999999999999999988 4579999998641 123567788887776521 14899999
Q ss_pred eccccccc----ccC-------HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGVDW----DQK-------DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll~~----~~d-------~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
|... ... ..+ ...++.++.++|||||.|++..+..
T Consensus 97 sd~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 97 SDAM-AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp ECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 9643 111 111 2467899999999999999887643
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=110.70 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=81.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCC--CCCCCccEEEec---
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCA--- 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lp--fpd~sFDlV~~s--- 324 (667)
+.+|||+|||+|..+..+++.... ..|+++|.++.+++.++++ ++++.+..+|+..++ +++++||+|++.
T Consensus 247 g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 325 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC 325 (429)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred cCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCC
Confidence 479999999999999999987432 6799999999998877654 667778888887776 666799999962
Q ss_pred -c-cccccccCH----------------HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 325 -R-CGVDWDQKD----------------GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 325 -~-~ll~~~~d~----------------~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
. ..++..++. ..+|.++.++|||||++++++....
T Consensus 326 sg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 326 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred CcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1 112222221 3689999999999999999987554
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=102.71 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=76.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC-C-C-----CCCCccE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-Y-----PSLSFDM 320 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-p-f-----pd~sFDl 320 (667)
+.+|||||||+|..+..+++.-.....++++|.++.+++.|+++ ++ .+.+..+++... + + ++++||+
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 47999999999999999998632246799999999999888754 44 255666665442 2 2 2578999
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|++... ..+...++.++.++|||||++++.+.
T Consensus 151 I~~d~~----~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 151 GFVDAD----KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEECSC----GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred EEECCc----hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 998632 34557899999999999999998764
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-07 Score=91.85 Aligned_cols=95 Identities=12% Similarity=0.028 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
...+|||+|||+|.++..+++.+. ..++++|.++.+++.++++ ++++.+..+|+..++ ++||+|+++....
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 347999999999999999998853 3699999999999998865 336778888888764 4899999987633
Q ss_pred ccc-cCHHHHHHHHHhcccCCeEEEEE
Q 005959 329 DWD-QKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 329 ~~~-~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
... .....++.++.++| ||.+++.
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEE
Confidence 332 22357899999998 6655554
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-08 Score=112.16 Aligned_cols=107 Identities=22% Similarity=0.277 Sum_probs=80.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCC-CCCCCccEEEec----
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHCA---- 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lp-fpd~sFDlV~~s---- 324 (667)
+.+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+.+.+..+|+..++ +.+++||+|++.
T Consensus 102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~PcS 181 (464)
T 3m6w_A 102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCS 181 (464)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCCC
T ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCcC
Confidence 47999999999999999997632335799999999999887654 666677777877766 346799999952
Q ss_pred cc-ccccccC----------------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 325 RC-GVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 325 ~~-ll~~~~d----------------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.. .+...++ ...+|.++.++|||||+|++++.....
T Consensus 182 g~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~ 234 (464)
T 3m6w_A 182 GEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP 234 (464)
T ss_dssp CGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred CccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence 11 1111111 156899999999999999999876543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.4e-08 Score=100.02 Aligned_cols=120 Identities=14% Similarity=0.058 Sum_probs=89.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+.+|||||||+|.++..+++.+ ....|+++|+++.+++.|+++ ++ .+.+..+|......+++.||+|+.....
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 22 GARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 4789999999999999999885 456799999999999988754 44 3667777876666555579998765431
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeecc
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~~ 391 (667)
- +-...++.+..+.|+++|+|+++.... ...++.+....+|....+.
T Consensus 101 g---~lI~~IL~~~~~~l~~~~~lIlqp~~~--------------~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 101 G---RLIADILNNDIDKLQHVKTLVLQPNNR--------------EDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp H---HHHHHHHHHTGGGGTTCCEEEEEESSC--------------HHHHHHHHHHTTEEEEEEE
T ss_pred h---HHHHHHHHHHHHHhCcCCEEEEECCCC--------------hHHHHHHHHHCCCEEEEEE
Confidence 1 223568889999999999999986421 2345666677788777543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=104.84 Aligned_cols=108 Identities=20% Similarity=0.149 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEE
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIG 304 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~ 304 (667)
....+.+.+.+.... ..+|||||||+|.++..|++.+ ..++++|+++.|++.++++. .++.+.
T Consensus 14 ~~i~~~i~~~~~~~~--------~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 82 (285)
T 1zq9_A 14 PLIINSIIDKAALRP--------TDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVL 82 (285)
T ss_dssp HHHHHHHHHHTCCCT--------TCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE
T ss_pred HHHHHHHHHhcCCCC--------CCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 344555666554433 3799999999999999999885 36899999999999887652 246778
Q ss_pred eecccCCCCCCCCccEEEecccccccccCHH-HHH--------------HHH--HhcccCCeEEE
Q 005959 305 SFASKQLPYPSLSFDMLHCARCGVDWDQKDG-ILL--------------LEV--DRVLKPGGYFV 352 (667)
Q Consensus 305 ~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~-~~L--------------~Ei--~RvLKPGG~Lv 352 (667)
.+|+..++++ +||+|+++.. +++..+.- .++ +|+ +++|+|||.++
T Consensus 83 ~~D~~~~~~~--~fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 83 VGDVLKTDLP--FFDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp ESCTTTSCCC--CCSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred Ecceecccch--hhcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 8888887776 7999999755 55543221 222 233 36899999863
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.8e-08 Score=100.43 Aligned_cols=119 Identities=15% Similarity=0.091 Sum_probs=88.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+.+|||||||+|.++..|++.+ ....|+++|+++.+++.|+++ ++. +.+..+|......++..||+|+.....
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG 100 (244)
T 3gnl_A 22 NERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG 100 (244)
T ss_dssp SEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence 4789999999999999999885 456799999999999988765 553 567777766655554469998865431
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeec
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~ 390 (667)
- +-...+|.+..+.|+++|+|+++-... ...++.+....+|..+.+
T Consensus 101 g---~lI~~IL~~~~~~L~~~~~lIlq~~~~--------------~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 101 G---TLIRTILEEGAAKLAGVTKLILQPNIA--------------AWQLREWSEQNNWLITSE 146 (244)
T ss_dssp H---HHHHHHHHHTGGGGTTCCEEEEEESSC--------------HHHHHHHHHHHTEEEEEE
T ss_pred h---HHHHHHHHHHHHHhCCCCEEEEEcCCC--------------hHHHHHHHHHCCCEEEEE
Confidence 1 223568899999999999999986421 224456666777876544
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.3e-08 Score=104.86 Aligned_cols=100 Identities=17% Similarity=0.005 Sum_probs=76.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..++..+. ...|+++|+++.|++.|+++ ++ .+.+.++|+..+++++++||+|+|+...
T Consensus 218 ~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPy 296 (373)
T 3tm4_A 218 GGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPY 296 (373)
T ss_dssp SCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCC
T ss_pred CCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCC
Confidence 47899999999999999998853 23689999999999988765 55 5788899999999988999999997541
Q ss_pred cccc------cC-HHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWD------QK-DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~------~d-~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.... .+ ...++.++.++| ||.+++...
T Consensus 297 g~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~ 330 (373)
T 3tm4_A 297 GLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT 330 (373)
T ss_dssp C------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred CcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 1111 11 156889999999 555555544
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.7e-08 Score=109.81 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=79.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCC-CCCCccEEEec---
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCA--- 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpf-pd~sFDlV~~s--- 324 (667)
+.+|||+|||+|..+..+++..-....|+++|+++.+++.++++ |+ ++.+..+|+..++. .+++||+|++.
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc 197 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC 197 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence 47999999999999999998632245799999999999887654 55 46677788777664 46789999973
Q ss_pred -c-cccccccC----------------HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 325 -R-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 325 -~-~ll~~~~d----------------~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
. ..+...++ ...+|.++.++|||||+|++++....
T Consensus 198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 1 11111111 23689999999999999999987553
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.6e-08 Score=107.22 Aligned_cols=103 Identities=15% Similarity=0.016 Sum_probs=77.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCC-CCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQL-PYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~L-pfpd~sFDlV~~s~~ll 328 (667)
+.+|||+|||+|.++..+++.|. .|+++|.|+.+++.|+++ ++...+.++|+..+ +...+.||+|++....+
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 47999999999999999998863 289999999999888754 56656667776553 22233499999974422
Q ss_pred cc--------ccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 329 DW--------DQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 329 ~~--------~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.. ..+...++.++.++|+|||+|++++....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 21 12334788999999999999998776543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.3e-08 Score=96.49 Aligned_cols=118 Identities=13% Similarity=0.083 Sum_probs=85.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecc-cCCCCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFAS-KQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da-~~Lpfpd~sFDlV~~s~~ 326 (667)
+.+|||||||+|.++..+++.+ +...|+++|+++.+++.|+++ ++. +.+..+|. ..++.. ..||+|+.+..
T Consensus 16 g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~-~~~D~IviaG~ 93 (225)
T 3kr9_A 16 GAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET-DQVSVITIAGM 93 (225)
T ss_dssp TEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-GCCCEEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC-cCCCEEEEcCC
Confidence 4789999999999999999875 456799999999999888754 553 56666665 233322 26999887643
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeec
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~ 390 (667)
.- .-...++.+....|+|+|+|+++-.. . -..++.+....+|..+.+
T Consensus 94 Gg---~~i~~Il~~~~~~L~~~~~lVlq~~~-~-------------~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 94 GG---RLIARILEEGLGKLANVERLILQPNN-R-------------EDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp CH---HHHHHHHHHTGGGCTTCCEEEEEESS-C-------------HHHHHHHHHHTTEEEEEE
T ss_pred Ch---HHHHHHHHHHHHHhCCCCEEEEECCC-C-------------HHHHHHHHHHCCCEEEEE
Confidence 11 12357899999999999999997552 1 123455666778877755
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.5e-08 Score=106.80 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=77.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccC-CCC---CCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ-LPY---PSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~-Lpf---pd~sFDlV~ 322 (667)
..+|||+|||+|.++..+++.+ ...|+++|.|+.+++.|+++ ++ ++.+.++|+.. ++. ..++||+|+
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 4799999999999999999875 34799999999999888754 44 46778888655 221 245899999
Q ss_pred eccccc----ccc----cCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 323 CARCGV----DWD----QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 323 ~s~~ll----~~~----~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+..... ... .+...++.++.++|+|||+++++.....
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 864322 112 2234577888999999999999986543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.6e-08 Score=103.82 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=79.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCCCC----CCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLPY----PSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~Lpf----pd~sFDlV~ 322 (667)
..+|||+|||+|.++..+++.+ ...|+++|+++.+++.|+++ ++ ++.+..+|+..+.. .+++||+|+
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 4799999999999999999886 34799999999999888754 55 46777777665421 146899999
Q ss_pred eccccc--------ccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 323 CARCGV--------DWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 323 ~s~~ll--------~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+..-.. ........++.++.++|+|||+++++.....
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 974311 1123446789999999999999999886543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.61 E-value=7.4e-08 Score=102.21 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=78.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc----eeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELL----TMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~----~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s 324 (667)
...+|||+|||+|.++..+++.... ...++|+|+++.+++.|+.+ ++.+.+..+|+.. +.+.+.||+|+++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISD 208 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEEC
Confidence 3479999999999999988876311 26799999999999888753 6677787777655 3345789999999
Q ss_pred ccccccccC----------------H-HHHHHHHHhcccCCeEEEEEeCC
Q 005959 325 RCGVDWDQK----------------D-GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 325 ~~ll~~~~d----------------~-~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
....++..+ . ..++.++.+.|+|||++++..+.
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 652222111 1 15899999999999999999874
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.61 E-value=4.4e-08 Score=106.05 Aligned_cols=104 Identities=14% Similarity=0.013 Sum_probs=79.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCC----CCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPY----PSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpf----pd~sFDlV~~ 323 (667)
..+|||+|||+|.++..+++.+ ...|+++|.++.+++.|+++ ++ ++.+..+|+..+.. .+++||+|++
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g--~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 4799999999999999999875 34799999999999888654 44 46777777665431 2578999999
Q ss_pred cccccc--------cccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 324 ARCGVD--------WDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 324 s~~ll~--------~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
..-.+. ...+...++.++.++|+|||+++++.....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 643221 113345789999999999999999887543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.61 E-value=9e-08 Score=100.08 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=62.0
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEee
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF 306 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~ 306 (667)
...+.+.+.+.... ..+|||||||+|.++..|++.+ ..|+++|+++.|++.++++ +. ++.+..+
T Consensus 29 ~i~~~i~~~~~~~~--------~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~ 97 (299)
T 2h1r_A 29 GILDKIIYAAKIKS--------SDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEG 97 (299)
T ss_dssp HHHHHHHHHHCCCT--------TCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEC---
T ss_pred HHHHHHHHhcCCCC--------cCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEC
Confidence 34455666554433 3799999999999999999874 4699999999999988764 33 4667778
Q ss_pred cccCCCCCCCCccEEEecccccccc
Q 005959 307 ASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 307 da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
|+..++++ +||+|+++.. +++.
T Consensus 98 D~~~~~~~--~~D~Vv~n~p-y~~~ 119 (299)
T 2h1r_A 98 DAIKTVFP--KFDVCTANIP-YKIS 119 (299)
T ss_dssp -CCSSCCC--CCSEEEEECC-GGGH
T ss_pred chhhCCcc--cCCEEEEcCC-cccc
Confidence 88777764 7999999855 5554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.4e-08 Score=113.97 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=79.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---ceEEeecccC-CCCCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQ-LPYPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~-Lpfpd~sFDlV~~s~ 325 (667)
+.+|||+|||+|.++..++..|. ..|+++|.|+.+++.|+++ ++. +.+.++|+.. ++...++||+|++..
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 47999999999999999998763 4699999999999988764 443 6777788765 445567999999964
Q ss_pred cc----------cccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CG----------VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~l----------l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
-. .....+...++.++.++|+|||+|+++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 32 122234457899999999999999998765
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=5.2e-08 Score=105.11 Aligned_cols=103 Identities=18% Similarity=0.116 Sum_probs=78.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCC----CCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPY----PSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpf----pd~sFDlV~~s 324 (667)
..+|||+|||+|.++..+++. ...|+++|.++.+++.|+++ ++. +.+..+|+..+.. .+++||+|++.
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 378999999999999999987 46799999999999888754 443 6777777765432 25789999996
Q ss_pred cccccc--------ccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 325 RCGVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 325 ~~ll~~--------~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.-.+.. ......++.++.++|+|||+++++.....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 432111 12345689999999999999999987543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=8.6e-08 Score=97.65 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=75.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+.+|||||||+|.++..+. ....++++|+++.|++++++. +.+..+...|....+.+. +||+|++.-+ +
T Consensus 105 ~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~-l 178 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKL-L 178 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESC-H
T ss_pred CCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHH-H
Confidence 46899999999999999887 246799999999999888754 666778888887777665 8999999877 4
Q ss_pred ccccCH-HHHHHHHHhcccCCeEEEEEe
Q 005959 329 DWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 329 ~~~~d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
|+.++. .....++...|+++|.++-..
T Consensus 179 h~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 179 PLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred HHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 444333 234448888999997766543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=104.77 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCC-CCCCCccEEEeccc-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCARC- 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lp-fpd~sFDlV~~s~~- 326 (667)
+.+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+. +.+...|+..++ +.+++||+|++.--
T Consensus 106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPC 185 (456)
T 3m4x_A 106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPC 185 (456)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCC
T ss_pred CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCC
Confidence 47999999999999999987622235799999999999877654 553 556677776665 34579999997421
Q ss_pred ----ccc--------cccC--------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 327 ----GVD--------WDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 327 ----ll~--------~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.+. |..+ ...+|.++.++|||||+|++++.....
T Consensus 186 Sg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 239 (456)
T 3m4x_A 186 SGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP 239 (456)
T ss_dssp CCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred CCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence 111 1111 126799999999999999999876543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.4e-07 Score=96.90 Aligned_cols=94 Identities=12% Similarity=-0.058 Sum_probs=66.9
Q ss_pred CCCEEEEeCC------CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceE-EeecccCCCCCCCCccEEEecc
Q 005959 253 GVRTILDIGC------GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI-GSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGC------GtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~-~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
+..+|||||| |+|. ..+++.-.....|+++|+++. + .++.+ .++|+..++++ ++||+|+|+.
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------~~v~~~i~gD~~~~~~~-~~fD~Vvsn~ 131 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------SDADSTLIGDCATVHTA-NKWDLIISDM 131 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------CSSSEEEESCGGGCCCS-SCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------CCCEEEEECccccCCcc-CcccEEEEcC
Confidence 4579999999 5576 334433212357999999987 2 24667 88899888876 6899999974
Q ss_pred cccccc-----------cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 326 CGVDWD-----------QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 326 ~ll~~~-----------~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
. .++. .....+++++.|+|||||.|++.++..
T Consensus 132 ~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 132 Y-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp C-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred C-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 3 2211 112479999999999999999987644
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.6e-09 Score=106.17 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=76.9
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecc
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFAS 308 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da 308 (667)
...+.+.+.+.... ..+|||||||+|.++..+++.+ ..++++|+++.|++.++++. .++.+..+|+
T Consensus 16 ~~~~~i~~~~~~~~--------~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~ 84 (245)
T 1yub_A 16 KVLNQIIKQLNLKE--------TDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI 84 (245)
T ss_dssp TTHHHHHHHCCCCS--------SEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCC
T ss_pred HHHHHHHHhcCCCC--------CCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECCh
Confidence 34455666655433 3789999999999999999885 56999999999998876642 2466788899
Q ss_pred cCCCCCC-CCccEEEecccccccc-----------cCHHHHH----HHHHhcccCCeEEEEE
Q 005959 309 KQLPYPS-LSFDMLHCARCGVDWD-----------QKDGILL----LEVDRVLKPGGYFVWT 354 (667)
Q Consensus 309 ~~Lpfpd-~sFDlV~~s~~ll~~~-----------~d~~~~L----~Ei~RvLKPGG~Lvis 354 (667)
..+++++ ++| .|+++.. ++.. .....++ +.+.|+|+|||.+++.
T Consensus 85 ~~~~~~~~~~f-~vv~n~P-y~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 85 LQFQFPNKQRY-KIVGNIP-YHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp TTTTCCCSSEE-EEEEECC-SSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred hhcCcccCCCc-EEEEeCC-ccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 8888874 689 6777632 2211 1111233 5578888888876654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-07 Score=94.89 Aligned_cols=96 Identities=9% Similarity=0.114 Sum_probs=75.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+.+|||+|||+|.++..+++++ ...|+++|.++.+++.++++ ++. +.+..+|+..++. .+.||.|+++..
T Consensus 126 g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p- 201 (278)
T 3k6r_A 126 DELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV- 201 (278)
T ss_dssp TCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-
T ss_pred CCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC-
Confidence 4799999999999999999886 34699999999999887653 443 4567778777654 468999998733
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.....+|..+.++|||||.+.+....
T Consensus 202 ----~~~~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 202 ----VRTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ----CcHHHHHHHHHHHcCCCCEEEEEeee
Confidence 22346788889999999999887654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=102.07 Aligned_cols=99 Identities=19% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccc---
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW--- 330 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~--- 330 (667)
..+|||+|||+|.++..++++......++|+|+++.+++.| ..+.+.++|....+. +++||+|+++--....
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCT
T ss_pred CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcCc-cCCCCEEEECcCccCcccc
Confidence 36999999999999999987521235799999999998777 356677778776643 4689999997321111
Q ss_pred ------c-cC------------------HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 331 ------D-QK------------------DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 331 ------~-~d------------------~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. ++ ...++..+.++|+|||++++..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 0 11 125688999999999999999874
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=94.87 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=56.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCC-CCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPS-LSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd-~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..+++++ ..++++|.++.|++.++++. .++.+..+|+..+++++ ..| .|+++..
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~nlP 103 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFGNIP 103 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEEECC
T ss_pred CCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEEeCC
Confidence 34799999999999999999985 56999999999999998763 35678889999999875 456 5666643
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=7e-07 Score=98.03 Aligned_cols=95 Identities=16% Similarity=0.246 Sum_probs=72.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
...+|||+|||+|.++..|++.+ ..|+++|.++.|++.|+++ ++.+.+..+|+..+... +||+|++.....
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK--GFDTVIVDPPRA 364 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECCCTT
T ss_pred CCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcCCcc
Confidence 34799999999999999999874 4699999999999888654 55577888888776432 899999874311
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.....++..+. .|+|||+++++..
T Consensus 365 ---g~~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 365 ---GLHPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp ---CSCHHHHHHHH-HHCCSEEEEEESC
T ss_pred ---chHHHHHHHHH-hcCCCcEEEEECC
Confidence 11234555554 5999999999863
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-07 Score=94.74 Aligned_cols=101 Identities=12% Similarity=0.044 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+.+|||||||+|-++..++... ....++++|+++.|+++++++ |++..+...|...-+ +.+.||+|++.-+ +
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkt-i 208 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKT-L 208 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTC-H
T ss_pred CCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHH-H
Confidence 36799999999999999988763 567899999999999887654 677777777754444 5578999999977 5
Q ss_pred ccccCH-HHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKD-GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+.++. .....++...|+|+|.+|-...
T Consensus 209 ~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 209 PCLETQQRGSGWEVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp HHHHHHSTTHHHHHHHHSSCSEEEEEEEC
T ss_pred HHhhhhhhHHHHHHHHHhCCCCEEEeccc
Confidence 555443 2233399999999999886544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-07 Score=97.89 Aligned_cols=94 Identities=10% Similarity=0.071 Sum_probs=75.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++.. ++. ...|+++|.++.+++.|+++ ++ ++.+..+|+.... ++||+|++...
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP- 267 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP- 267 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT-
T ss_pred CCEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc-
Confidence 47999999999999999 773 45799999999999888754 44 4678888887765 78999998732
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
. ....++.++.++|+|||.+++.+....
T Consensus 268 ~----~~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 268 K----FAHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp T----TGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred H----hHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 1 123689999999999999999876543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.9e-07 Score=94.69 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeec
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA 307 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~d 307 (667)
....+.+.+.+....+ .+|||||||+|.++..|++.+ ..|+++|.++.|++.++++. .++.+..+|
T Consensus 36 ~~i~~~Iv~~l~~~~~--------~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD 104 (295)
T 3gru_A 36 KNFVNKAVESANLTKD--------DVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKELYNNIEIIWGD 104 (295)
T ss_dssp HHHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHHCSSEEEEESC
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhccCCCeEEEECc
Confidence 4455566666654443 799999999999999999874 56899999999999887652 467888999
Q ss_pred ccCCCCCCCCccEEEeccccccc
Q 005959 308 SKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 308 a~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
+..+++++.+||+|+++.. +++
T Consensus 105 ~l~~~~~~~~fD~Iv~NlP-y~i 126 (295)
T 3gru_A 105 ALKVDLNKLDFNKVVANLP-YQI 126 (295)
T ss_dssp TTTSCGGGSCCSEEEEECC-GGG
T ss_pred hhhCCcccCCccEEEEeCc-ccc
Confidence 9999998889999998855 444
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=9.1e-07 Score=97.09 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=71.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC----CCCCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----Lpfpd~sFDlV~~s 324 (667)
..+|||+|||+|.++..|++. ...|+++|.|+.+++.|+++ ++ ++.+..+|+.. +++++++||+|++.
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence 478999999999999999987 35699999999999888754 44 56788888766 45677899999987
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.-... . ..++..+. .++|++.++++..
T Consensus 364 PPr~g---~-~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 364 PARAG---A-AGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp CCTTC---C-HHHHHHHH-HHCCSEEEEEESC
T ss_pred CCCcc---H-HHHHHHHH-hcCCCeEEEEECC
Confidence 43111 1 24555554 3789999888754
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.40 E-value=4.7e-07 Score=99.63 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=83.0
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcC------------CceeEEEEecCCHHHHHHHHH---
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE------------LLTMCIANYEASGSQVQLTLE--- 296 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g------------~~~~sV~gvD~S~~ml~~A~e--- 296 (667)
...+.+.+.+... ...+|||.|||+|.++..+++.- .....++|+|+++.+++.|+.
T Consensus 158 ~v~~~mv~~l~~~--------~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 158 PLIQAMVDCINPQ--------MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp HHHHHHHHHHCCC--------TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--------CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 3445555555432 33689999999999998887641 023468999999999988865
Q ss_pred -cCC---CceEEeecccCCCCCCCCccEEEeccccccc--ccC--------------HHHHHHHHHhcccCCeEEEEEeC
Q 005959 297 -RGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVDW--DQK--------------DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 297 -rgl---~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~--~~d--------------~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+++ ...+.++|+...+... .||+|+++...... ... ...++..+.+.|||||++++..|
T Consensus 230 l~g~~~~~~~i~~gD~l~~~~~~-~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKEPST-LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSCCSS-CEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhCCCcCCCCEeeCCCCCCcccC-CcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 355 5667778877666543 89999998542221 110 13689999999999999999887
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=5.3e-07 Score=90.95 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=91.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cccccccccccCCCCCCCccccccccC-ccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEG-LLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Glig~~~~~c~~f~typ~tyDl~H~~~-~~~~~ 592 (667)
..|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ .+-=+..|.. .++. +.+||+|.|.. +|...
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~-~~~fD~v~~~~~~l~~~ 124 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFG-----TVEGLELSADMLAIARRRNPDAVLHHGDMR-DFSL-GRRFSAVTCMFSSIGHL 124 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSS-----EEEEEESCHHHHHHHHHHCTTSEEEECCTT-TCCC-SCCEEEEEECTTGGGGS
T ss_pred CcEEEeCCcCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhCCCCEEEECChH-HCCc-cCCcCEEEEcCchhhhc
Confidence 5799999999999999987422 45555554 555555554 2222223332 2443 78999999987 77766
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEcC-------------------------------------------------
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------------------------------------------- 623 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------------------------------------------- 623 (667)
. +.-....+|-++-|+|+|||++++.+-
T Consensus 125 ~---~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (263)
T 3pfg_A 125 A---GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDR 201 (263)
T ss_dssp C---HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTT
T ss_pred C---CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCC
Confidence 4 333455789999999999999999520
Q ss_pred ------------HHHHHHHHHHHhhCCCeeEEeeeccCCCccEEEEEcc
Q 005959 624 ------------ARLIESARALTTRLKWDARVIEIESNSDERLLICQKP 660 (667)
Q Consensus 624 ------------~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~li~~K~ 660 (667)
.-..++++.+++.--+++...... .....++|++|+
T Consensus 202 ~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~-~~~~~~~va~K~ 249 (263)
T 3pfg_A 202 GITHHEESHRITLFTREQYERAFTAAGLSVEFMPGG-PSGRGLFTGLPG 249 (263)
T ss_dssp EEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST-TTSSCEEEEEEC
T ss_pred cEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCC-CCCceeEEEecC
Confidence 002688889999988887765322 235678999997
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.2e-07 Score=87.26 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=89.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCC---CCCC-CccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAF---PTYP-RTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f---~typ-~tyDl~H~~~~~~~ 591 (667)
.+|||+|||.|.++.+|.+. .. +|+-+|-. ..+..+-+++-+.....-.+.+ +..+ .+||+|.+..++.
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~--~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~- 127 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADR--GI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL- 127 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTT--TC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-
T ss_pred CEEEEeCCCCCHHHHHHHHC--CC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-
Confidence 68999999999999999873 22 45555554 6677777775433322111112 2233 4599999998887
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEcCH--------------------------------HHHHHHHHHHhhCCC
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA--------------------------------RLIESARALTTRLKW 639 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~--------------------------------~~~~~~~~~~~~~~W 639 (667)
. .....+|-|+-|+|+|||++++.+.. ...++++++++.--+
T Consensus 128 -~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 201 (227)
T 3e8s_A 128 -H-----QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGL 201 (227)
T ss_dssp -S-----SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTE
T ss_pred -h-----hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCC
Confidence 2 34557999999999999999996431 146888889999899
Q ss_pred eeEEeeeccC-----CCccEEEEEcc
Q 005959 640 DARVIEIESN-----SDERLLICQKP 660 (667)
Q Consensus 640 ~~~~~~~~~~-----~~~~~li~~K~ 660 (667)
++........ +..-++|++|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 202 RLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred eEEEEecCCCCCCCCceeEEEEeecC
Confidence 8776543221 12456777774
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=88.79 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeec
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA 307 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~d 307 (667)
....+.+.+.+....+ .+|||||||+|.+|..|++++ ..|+++|.++.|++.++++. .++.+..+|
T Consensus 15 ~~i~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D 83 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKT--------DTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQQKNITIYQND 83 (255)
T ss_dssp HHHHHHHHHHHCCCTT--------CEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTTCTTEEEEESC
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcc
Confidence 3455566666654443 799999999999999999985 46999999999999988762 467788899
Q ss_pred ccCCCCCC----CCccEEEeccc
Q 005959 308 SKQLPYPS----LSFDMLHCARC 326 (667)
Q Consensus 308 a~~Lpfpd----~sFDlV~~s~~ 326 (667)
+..+++++ +.|| |+++.-
T Consensus 84 ~~~~~~~~~~~~~~~~-vv~NlP 105 (255)
T 3tqs_A 84 ALQFDFSSVKTDKPLR-VVGNLP 105 (255)
T ss_dssp TTTCCGGGSCCSSCEE-EEEECC
T ss_pred hHhCCHHHhccCCCeE-EEecCC
Confidence 99888753 4688 666643
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.7e-07 Score=87.35 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=76.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--c-ccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--V-GVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--i-g~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-+ .|+ + -+..|..+ ++. +.+||+|.+..+
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~D~v~~~~~ 106 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY-----DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN-LTF-DRQYDFILSTVV 106 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG-CCC-CCCEEEEEEESC
T ss_pred CeEEEEcCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh-CCC-CCCceEEEEcch
Confidence 4899999999999999987422 44444443 33433332 232 1 12233332 343 789999999998
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcC--------------HHHHHHHHHHHhhCCCeeEEee
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--------------ARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--------------~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
+.... .-....+|-++-|+|+|||++++-+. .-.-++++++.+. |++...+
T Consensus 107 l~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 107 LMFLE----AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp GGGSC----GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhhCC----HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 87653 23456789999999999999877431 0134567777776 8877654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=89.26 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=69.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH---cCCCceEEeecccCCCCCCCCccEEEecccccc-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE---RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD- 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e---rgl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~- 329 (667)
..+|||||||+|.++..++++. ....+.++|++..+...... .+.++.....+++...++++.||+|+|..+ .+
T Consensus 75 ~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~a-pns 152 (277)
T 3evf_A 75 EGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIG-ESS 152 (277)
T ss_dssp CEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-CCC
T ss_pred CCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCc-cCc
Confidence 4689999999999999988762 24567788877432100100 122334444455556778889999999864 33
Q ss_pred ---cccCHH--HHHHHHHhcccCC-eEEEEEeCCC
Q 005959 330 ---WDQKDG--ILLLEVDRVLKPG-GYFVWTSPLT 358 (667)
Q Consensus 330 ---~~~d~~--~~L~Ei~RvLKPG-G~Lvis~p~~ 358 (667)
+.+... .+|..+.++|+|| |.|++-.+.+
T Consensus 153 G~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p 187 (277)
T 3evf_A 153 SSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP 187 (277)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 333222 3578889999999 9999988764
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.7e-07 Score=85.58 Aligned_cols=131 Identities=8% Similarity=0.020 Sum_probs=89.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc--ccccccccccCCCCCCCccccccccCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG--lig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
..|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++. +-=+..|.. .++.-+.+||+|.+..++.+..
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH-----QIEGLEPATRLVELARQTHPSVTFHHGTIT-DLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC-----CEEEECCCHHHHHHHHHHCTTSEEECCCGG-GGGGSCCCEEEEEEESSSTTCC
T ss_pred CeEEEecCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHhCCCCeEEeCccc-ccccCCCCeEEEEehhhHhcCC
Confidence 4799999999999999998432 44444544 5555555552 211222322 2332248999999998887763
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEEcCH----------------HHHHHHHHHHhhCCCeeEEeeeccCCCccEEEE
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEIESNSDERLLIC 657 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~li~ 657 (667)
.-....+|-|+-|+|+|||++++.+.. ...++++.+++...|++.............++.
T Consensus 117 ----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~ 192 (203)
T 3h2b_A 117 ----PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTA 192 (203)
T ss_dssp ----TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEE
T ss_pred ----HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhh
Confidence 235668999999999999999996421 236788899999999988776655533444433
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.2e-06 Score=90.62 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCc-------------------------------------eeEEEEecCCHHHHHHHHH
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELL-------------------------------------TMCIANYEASGSQVQLTLE 296 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~-------------------------------------~~sV~gvD~S~~ml~~A~e 296 (667)
..+|||.+||+|.++..++..+.. ...|+|+|+++.|++.|++
T Consensus 196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~ 275 (385)
T 3ldu_A 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE 275 (385)
T ss_dssp TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence 478999999999999888765321 1469999999999998875
Q ss_pred c----CC--CceEEeecccCCCCCCCCccEEEecccccccc---cCHHHHHHHHHhcccC--CeEEEEEeCCC
Q 005959 297 R----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKP--GGYFVWTSPLT 358 (667)
Q Consensus 297 r----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~---~d~~~~L~Ei~RvLKP--GG~Lvis~p~~ 358 (667)
+ ++ .+.+.+.|+..++.+ .+||+|+++--..... .+...+.+++.++||+ ||.+++.+...
T Consensus 276 Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 276 NAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp HHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred HHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence 4 55 467888898888776 4899999985522211 2234577777778877 88888877644
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.8e-06 Score=89.85 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCc-------------------------------------eeEEEEecCCHHHHHHHHH
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELL-------------------------------------TMCIANYEASGSQVQLTLE 296 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~-------------------------------------~~sV~gvD~S~~ml~~A~e 296 (667)
...|||.+||+|.++..++..+.. ...|+++|+++.|++.|++
T Consensus 202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~ 281 (393)
T 3k0b_A 202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ 281 (393)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence 478999999999998877764321 1459999999999998875
Q ss_pred c----CC--CceEEeecccCCCCCCCCccEEEecccccccc---cCHHHHHHHHHhcccC--CeEEEEEeCCC
Q 005959 297 R----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKP--GGYFVWTSPLT 358 (667)
Q Consensus 297 r----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~---~d~~~~L~Ei~RvLKP--GG~Lvis~p~~ 358 (667)
+ |+ .+.+.++|+..++.++ +||+|+++.-..... .+...+..++.++||+ ||.+++.+...
T Consensus 282 Na~~~gl~~~I~~~~~D~~~~~~~~-~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 282 NAVEAGLGDLITFRQLQVADFQTED-EYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE 353 (393)
T ss_dssp HHHHTTCTTCSEEEECCGGGCCCCC-CSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred HHHHcCCCCceEEEECChHhCCCCC-CCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 4 44 3678889999888764 899999994411111 2233466666677766 88888877643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-06 Score=89.78 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=66.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCCCccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
..|||+|||.|+++.+|.+. .+. +|+-+|-. ..+..+-++ |+..-+.-.+..+..+|.+||+|.+..+|.+
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~-~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~ 141 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEK-YDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH 141 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred CEEEEECCcccHHHHHHHHH-cCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhh
Confidence 47999999999999999842 233 45555544 566555554 4322111112222234489999999999887
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.. .-....+|-|+-|+|+|||.+++.+
T Consensus 142 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 142 FG----HERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp TC----TTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cC----hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 63 1345678999999999999999864
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.18 E-value=8.8e-07 Score=91.88 Aligned_cols=137 Identities=16% Similarity=0.108 Sum_probs=90.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc---c-cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---G-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli---g-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|.++.+|.....+- .+|+-+|-. ..+..+-+ .|+- - +..|..+ ++ ++.+||+|.+..
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~ 195 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPG--VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-LD-TREGYDLLTSNG 195 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTT--CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-CC-CCSCEEEEECCS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCC--CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-CC-ccCCeEEEEECC
Confidence 469999999999999984211221 134444443 44444433 3332 1 2233333 33 348999999998
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcCH---------------------------------------HHHH
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------------------------------RLIE 628 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------------------------------------~~~~ 628 (667)
++.+.. +.-....+|-|+-|+|||||++++.+-. ...+
T Consensus 196 ~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEP---DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCC---CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcC---CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 887764 3333335799999999999999987611 1367
Q ss_pred HHHHHHhhCCCeeEEeeeccCCCccEEEEEcc
Q 005959 629 SARALTTRLKWDARVIEIESNSDERLLICQKP 660 (667)
Q Consensus 629 ~~~~~~~~~~W~~~~~~~~~~~~~~~li~~K~ 660 (667)
+++++++.--++...........-.+++++||
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 88888888889887665444445678899986
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.17 E-value=8.8e-06 Score=85.61 Aligned_cols=105 Identities=8% Similarity=-0.067 Sum_probs=73.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCC---CCccEEEec-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPS---LSFDMLHCA- 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd---~sFDlV~~s- 324 (667)
+.+|||+|||+|..+..+++.-.....|+++|.++.+++.++++ ++ ++.+..+|+..++... ++||.|++.
T Consensus 103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~ 182 (309)
T 2b9e_A 103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDP 182 (309)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECC
T ss_pred CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcC
Confidence 37999999999999999997521235799999999999877654 54 4667778877775432 579999972
Q ss_pred ---c-cccccc-----------cCH-------HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 325 ---R-CGVDWD-----------QKD-------GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 325 ---~-~ll~~~-----------~d~-------~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
. ..+... .+. ..+|..+.++|+ ||+++.++-...
T Consensus 183 PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 183 SCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp CCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred CcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 1 111110 111 246777888887 999999876544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.7e-06 Score=83.21 Aligned_cols=138 Identities=12% Similarity=0.083 Sum_probs=87.5
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc------------cccccccccccCCCCCCCcccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------------GFVGVLHDWCEAFPTYPRTYDL 582 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R------------Glig~~~~~c~~f~typ~tyDl 582 (667)
-.+|||+|||.|.++.+|.+.. +. -+|+-+|-. ..+..+-++ .+-=+..|. +..+.-+.+||+
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~-~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~ 105 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDK-SF--EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDA 105 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTST-TC--CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSE
T ss_pred CCEEEEecCCCCHHHHHHHhcC-CC--CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCE
Confidence 3589999999999999998632 21 234444443 444444333 221122233 223323479999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCHH----------------------HHHHHH----HHHhh
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR----------------------LIESAR----ALTTR 636 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~----------------------~~~~~~----~~~~~ 636 (667)
|.|..++..... -.+..+|-|+-|+|+|||.+|.....+ .-++++ .+++.
T Consensus 106 V~~~~~l~~~~~----~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 181 (219)
T 3jwg_A 106 ATVIEVIEHLDE----NRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEK 181 (219)
T ss_dssp EEEESCGGGCCH----HHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHH
T ss_pred EEEHHHHHhCCH----HHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHH
Confidence 999999887641 234578999999999999888643221 123334 77777
Q ss_pred CCCeeEEeeeccC-----CCccEEEEEccc
Q 005959 637 LKWDARVIEIESN-----SDERLLICQKPF 661 (667)
Q Consensus 637 ~~W~~~~~~~~~~-----~~~~~li~~K~~ 661 (667)
--+++.....-+. ...++.||+|.=
T Consensus 182 ~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~~ 211 (219)
T 3jwg_A 182 YGYSVRFLQIGEIDDEFGSPTQMGVFTLGA 211 (219)
T ss_dssp HTEEEEEEEESCCCTTSCCSEEEEEEEECC
T ss_pred CCcEEEEEecCCccccCCCCeEEEEEeccC
Confidence 7888877644332 257899999863
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.3e-06 Score=90.60 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=73.8
Q ss_pred CCEEEEeCCCCchHHHHHhhc----------------CCceeEEEEecCC-----------HHHHHHHHH-cC--CCceE
Q 005959 254 VRTILDIGCGYGSFGAHLFSK----------------ELLTMCIANYEAS-----------GSQVQLTLE-RG--LPAMI 303 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~----------------g~~~~sV~gvD~S-----------~~ml~~A~e-rg--l~~~~ 303 (667)
..+|+|+||++|..|..+... ..+...|...|.. +.+.+.+.+ .+ .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999998877654 1245778888877 444443322 23 23445
Q ss_pred Eeec---ccCCCCCCCCccEEEecccccccccCHH---------------------------------------HHHHHH
Q 005959 304 GSFA---SKQLPYPSLSFDMLHCARCGVDWDQKDG---------------------------------------ILLLEV 341 (667)
Q Consensus 304 ~~~d---a~~Lpfpd~sFDlV~~s~~ll~~~~d~~---------------------------------------~~L~Ei 341 (667)
..+. ...-.||+++||+|+++.+ +||..+.. .+|+-.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYC-LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESC-TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecce-eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3335689999999999988 99974432 125666
Q ss_pred HhcccCCeEEEEEeCCCCh
Q 005959 342 DRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 342 ~RvLKPGG~Lvis~p~~~~ 360 (667)
.+.|+|||.++++..+...
T Consensus 212 a~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 212 SEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHEEEEEEEEEEEECCCT
T ss_pred HHHhccCCeEEEEEecCCC
Confidence 8999999999999887644
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.1e-07 Score=91.43 Aligned_cols=93 Identities=17% Similarity=0.065 Sum_probs=62.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCCCCccccccccCccccccCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
.+|||+|||.|.++..|.+.... |+-+|-. ..+..+-++.=|-..+.=-|.++.=+.+||+|.|..+|. |.
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~~-----v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h-~~-- 112 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFER-----VHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMH-WF-- 112 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCSE-----EEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCT-TC--
T ss_pred CCEEEEcCCCCHHHHHHHHhCCE-----EEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehh-Hh--
Confidence 37999999999999999874433 4444443 444444333212222222344443348999999998883 43
Q ss_pred CCCCCcchhheeccccccCCcEEEEE
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+.+..+-|+-|+|||||.+++-
T Consensus 113 ----~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 113 ----DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp ----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEE
Confidence 2457899999999999999873
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-06 Score=85.33 Aligned_cols=117 Identities=12% Similarity=0.062 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH
Q 005959 479 ENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI 557 (667)
Q Consensus 479 ~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~ 557 (667)
..|...+..+.+.+...+ ..-.+|||+|||.|.++..|.+... +|+-+|-. ..+..+
T Consensus 21 ~~~~~~~~~~~~~l~~~~-----------------~~~~~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a 78 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRT-----------------PEASSLLDVACGTGTHLEHFTKEFG-----DTAGLELSEDMLTHA 78 (239)
T ss_dssp CCHHHHHHHHHHHHHHHC-----------------TTCCEEEEETCTTSHHHHHHHHHHS-----EEEEEESCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhc-----------------CCCCeEEEecccCCHHHHHHHHhCC-----cEEEEeCCHHHHHHH
Confidence 556666666666665433 1135799999999999999987422 44555554 455555
Q ss_pred hccc--ccccccccccCCCCCCCccccccccC-ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 558 LDRG--FVGVLHDWCEAFPTYPRTYDLVHAEG-LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 558 ~~RG--lig~~~~~c~~f~typ~tyDl~H~~~-~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
-++. +--+..|.. .++. +.+||+|.|.. ++.+.. +.-....+|-++-|+|+|||.+++.+
T Consensus 79 ~~~~~~~~~~~~d~~-~~~~-~~~~D~v~~~~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 79 RKRLPDATLHQGDMR-DFRL-GRKFSAVVSMFSSVGYLK---TTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp HHHCTTCEEEECCTT-TCCC-SSCEEEEEECTTGGGGCC---SHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HHhCCCCEEEECCHH-Hccc-CCCCcEEEEcCchHhhcC---CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 5442 211222332 2343 68999999643 666553 22345678999999999999999963
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=87.22 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=76.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCc-------------------------------------eeEEEEecCCHHHHHHHHH
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELL-------------------------------------TMCIANYEASGSQVQLTLE 296 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~-------------------------------------~~sV~gvD~S~~ml~~A~e 296 (667)
...+||.+||+|.++..++..+.. ...++++|+++.|++.|++
T Consensus 195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~ 274 (384)
T 3ldg_A 195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK 274 (384)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence 378999999999998887754321 1459999999999998875
Q ss_pred c----CC--CceEEeecccCCCCCCCCccEEEecccccccc---cCHHHHHHHHHhcccC--CeEEEEEeCCC
Q 005959 297 R----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKP--GGYFVWTSPLT 358 (667)
Q Consensus 297 r----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~---~d~~~~L~Ei~RvLKP--GG~Lvis~p~~ 358 (667)
+ |+ .+.+.+.|+..++.++ +||+|+++--.-.-. .+...+..++.+.||+ ||.+++.++..
T Consensus 275 Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 275 NAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT 346 (384)
T ss_dssp HHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred HHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence 4 44 3678888999888764 899999984411111 2234577777777776 99988887743
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.9e-06 Score=88.71 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhc--------------CCceeEEEEecCCHHHHHHHHHc-----------------CCCc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK--------------ELLTMCIANYEASGSQVQLTLER-----------------GLPA 301 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~--------------g~~~~sV~gvD~S~~ml~~A~er-----------------gl~~ 301 (667)
...+|+|+|||+|..|..++.. ..+...|...|...+.....-+. +.+.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 3578999999999999887321 12356777778765553221110 0011
Q ss_pred eEEe---ecccCCCCCCCCccEEEecccccccccC--------------------------------------HHHHHHH
Q 005959 302 MIGS---FASKQLPYPSLSFDMLHCARCGVDWDQK--------------------------------------DGILLLE 340 (667)
Q Consensus 302 ~~~~---~da~~Lpfpd~sFDlV~~s~~ll~~~~d--------------------------------------~~~~L~E 340 (667)
.+.. +....-.||+++||+|+++.+ +||..+ ...+|+.
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 223334589999999999988 899752 2346888
Q ss_pred HHhcccCCeEEEEEeCCCCh
Q 005959 341 VDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 341 i~RvLKPGG~Lvis~p~~~~ 360 (667)
..+.|+|||.++++......
T Consensus 211 ra~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHHEEEEEEEEEEEEECCC
T ss_pred HHHHhCCCCEEEEEEecCCC
Confidence 99999999999999876543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.6e-06 Score=82.36 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=83.5
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cc-cccccccCCCCCCCccccccccCc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VG-VLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig-~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
+|||+|||.|.++..|.+. + -.+|+-+|-. ..+..+-++ |+ +- +..|..+ ++.-+.+||+|.+..+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~--~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQ--S--DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN-IPIEDNYADLIVSRGS 120 (219)
T ss_dssp EEEEETCTTSHHHHHHHHH--S--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB-CSSCTTCEEEEEEESC
T ss_pred EEEEECCCCCHHHHHHHHc--C--CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH-CCCCcccccEEEECch
Confidence 8999999999999999873 2 2355555654 555555444 33 11 2233322 3322389999999988
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcC------------------------------HHHHHHHHHHHhhCC
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------------------------ARLIESARALTTRLK 638 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------------------------~~~~~~~~~~~~~~~ 638 (667)
+.++. ....+|-|+-|+|+|||.+++.+. ....++++.+++.--
T Consensus 121 l~~~~------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 194 (219)
T 3dlc_A 121 VFFWE------DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIG 194 (219)
T ss_dssp GGGCS------CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHT
T ss_pred Hhhcc------CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcC
Confidence 87663 345789999999999999999742 122366777777777
Q ss_pred CeeEEeeeccCCCccEEEEEc
Q 005959 639 WDARVIEIESNSDERLLICQK 659 (667)
Q Consensus 639 W~~~~~~~~~~~~~~~li~~K 659 (667)
++......++ ....++..|
T Consensus 195 f~~v~~~~~~--~~~~~~~~k 213 (219)
T 3dlc_A 195 ISSYEIILGD--EGFWIIISK 213 (219)
T ss_dssp CSSEEEEEET--TEEEEEEBC
T ss_pred CCeEEEEecC--CceEEEEec
Confidence 8755443222 233445544
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=5.7e-06 Score=85.55 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecc
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFAS 308 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da 308 (667)
....+.+.+.+... .. +|||||||+|.+|..|++++ ..|+++|.++.|++.++++. .++.+..+|+
T Consensus 33 ~~i~~~Iv~~~~~~--------~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~ 100 (271)
T 3fut_A 33 EAHLRRIVEAARPF--------TG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDA 100 (271)
T ss_dssp HHHHHHHHHHHCCC--------CS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTTSSEEEEESCG
T ss_pred HHHHHHHHHhcCCC--------CC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCCCCEEEEECCh
Confidence 34455566655421 34 89999999999999999986 46899999999999998763 3577888999
Q ss_pred cCCCCCCC-CccEEEeccc
Q 005959 309 KQLPYPSL-SFDMLHCARC 326 (667)
Q Consensus 309 ~~Lpfpd~-sFDlV~~s~~ 326 (667)
..+++++. .||.|+++.-
T Consensus 101 l~~~~~~~~~~~~iv~NlP 119 (271)
T 3fut_A 101 LLYPWEEVPQGSLLVANLP 119 (271)
T ss_dssp GGSCGGGSCTTEEEEEEEC
T ss_pred hhCChhhccCccEEEecCc
Confidence 99888753 6999999854
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.1e-06 Score=80.47 Aligned_cols=127 Identities=14% Similarity=0.126 Sum_probs=84.3
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cccccccccccCCCCCCCccccccccCccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Glig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
-.+|||+|||.|.++.+|.+. . - +|+-+|-. ..+..+-++ .+--+..| .+|+ +.+||+|.+..++...
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~--~--~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~--~~~~D~v~~~~~l~~~ 88 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEF--A--T-KLYCIDINVIALKEVKEKFDSVITLSDP--KEIP--DNSVDFILFANSFHDM 88 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTT--E--E-EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSC--TTCEEEEEEESCSTTC
T ss_pred CCeEEEECCCCCHHHHHHHhh--c--C-eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCC--CCceEEEEEccchhcc
Confidence 468999999999999999862 2 2 66667765 566666555 22222333 4444 3799999999988766
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEcCH-------------HHHHHHHHHHhhCCCeeEEeeeccCCCccEEEEEc
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------RLIESARALTTRLKWDARVIEIESNSDERLLICQK 659 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------------~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~li~~K 659 (667)
. +...+|-|+-|+|+|||++++.+-. -..++++.+++ .|+..... +..+..-.+++.|
T Consensus 89 ~------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~-~~~~~~~~l~~~~ 159 (170)
T 3i9f_A 89 D------DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF-NPTPYHFGLVLKR 159 (170)
T ss_dssp S------CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE-CSSTTEEEEEEEE
T ss_pred c------CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc-CCCCceEEEEEec
Confidence 4 3457899999999999999996321 12456666666 66554432 2223445566655
Q ss_pred c
Q 005959 660 P 660 (667)
Q Consensus 660 ~ 660 (667)
+
T Consensus 160 ~ 160 (170)
T 3i9f_A 160 K 160 (170)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.5e-06 Score=89.56 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=68.3
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--CCC------------
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPS------------ 315 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--fpd------------ 315 (667)
.+|||+|||+|.++..+++. ...|+++|.++.+++.|+++ ++ ++.+..+|+..+. +..
T Consensus 215 ~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 68999999999999999875 34799999999999888653 44 4667777765542 221
Q ss_pred --CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 316 --LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 316 --~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+||+|++..-.. .+..++.+.|+++|.+++....+
T Consensus 292 ~~~~fD~Vv~dPPr~-------g~~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS-------GLDSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp GGCCEEEEEECCCTT-------CCCHHHHHHHTTSSEEEEEESCH
T ss_pred ccCCCCEEEECcCcc-------ccHHHHHHHHhCCCEEEEEECCH
Confidence 3799998753211 23456677778999988877643
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.10 E-value=9.6e-07 Score=87.02 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=64.2
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc---cccccccccccCCCCCCCccccccccCcccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R---Glig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
.|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ ++--+..|..+.+ .+.+||+|++.+++.+..
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN-----DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ--LPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS-----CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC--CSSCEEEEEEESCGGGCS
T ss_pred cEEEECCCCCHHHHHHHHhCC-----cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcC--cCCcccEEEEhhHHHhhc
Confidence 599999999999999987432 34444443 444444444 3222223333333 358999999999988765
Q ss_pred CCCCCCCcchhheecc-ccccCCcEEEEEc
Q 005959 594 GHRHRCSTLDIFTEID-RILRPEGWVIIRD 622 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~d-RiLRP~G~~i~~d 622 (667)
+...+|-|+- |+|+|||++++.+
T Consensus 118 ------~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 118 ------DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp ------SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ------CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 2357999999 9999999999965
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-06 Score=84.38 Aligned_cols=134 Identities=13% Similarity=0.034 Sum_probs=87.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++.+|.+...+-. .|+-+|-. ..+..+-++ |+ -=+..|.. .++.-+.+||+|.+..+
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVGEKG--KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN-KIPLPDNTVDFIFMAFT 115 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTT-BCSSCSSCEEEEEEESC
T ss_pred CEEEEEecCCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccc-cCCCCCCCeeEEEeehh
Confidence 4799999999999999987421111 33444443 444444333 22 11222332 22322378999999998
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcCH-------------HHHHHHHHHHhhCCCeeEEeeeccCCCccEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------RLIESARALTTRLKWDARVIEIESNSDERLL 655 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------------~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l 655 (667)
+.... +...+|-|+-|+|+|||++++.+-. ...++++.+++.-.++..... +..+...++
T Consensus 116 l~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~~~~~ 188 (219)
T 3dh0_A 116 FHELS------EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV-EVGKYCFGV 188 (219)
T ss_dssp GGGCS------SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE-EETTTEEEE
T ss_pred hhhcC------CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE-eeCCceEEE
Confidence 87764 2357899999999999999997411 225788888888889866553 223356677
Q ss_pred EEEcc
Q 005959 656 ICQKP 660 (667)
Q Consensus 656 i~~K~ 660 (667)
+++|+
T Consensus 189 ~~~k~ 193 (219)
T 3dh0_A 189 YAMIV 193 (219)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 88876
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.08 E-value=9.5e-07 Score=87.97 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=78.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccc---cCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWC---EAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c---~~f~typ~tyDl~H~~~~~~~~ 592 (667)
.+|||+|||.|.|+.+|.+.+. +|+-+|-. ..+..+-++ +--+..|.. ++|+. .+||+|.+..++.+.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~-~~~~~~d~~~~~~~~~~--~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI-----ESIGVDINEDMIKFCEGK-FNVVKSDAIEYLKSLPD--KYLDGVMISHFVEHL 114 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC-----CEEEECSCHHHHHHHHTT-SEEECSCHHHHHHTSCT--TCBSEEEEESCGGGS
T ss_pred CeEEEEeCCCCHHHHHHHhCCC-----cEEEEECCHHHHHHHHhh-cceeeccHHHHhhhcCC--CCeeEEEECCchhhC
Confidence 5799999999999999987433 34444544 666666666 211222222 24543 899999999988776
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEcCH-------------------HHHHHHHHHHhhCCCeeEEe
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------------RLIESARALTTRLKWDARVI 644 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------------------~~~~~~~~~~~~~~W~~~~~ 644 (667)
. .-.+..+|-|+-|+|+|||++++.... -..++++.+++.--++....
T Consensus 115 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 D----PERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp C----GGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred C----cHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 4 234567999999999999999996321 11256666666666665443
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=9.4e-06 Score=79.09 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=80.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCCCccccccccCccccccCCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 596 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~ 596 (667)
.+|||+|||.|.++..|. ..|..+-+.+. .+.+ . .+ |. +.++.-+.+||+|.+..++. +.
T Consensus 69 ~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~----~~~~--~---~~---d~-~~~~~~~~~fD~v~~~~~l~-~~--- 128 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR---NPVHCFDLASL----DPRV--T---VC---DM-AQVPLEDESVDVAVFCLSLM-GT--- 128 (215)
T ss_dssp SCEEEETCTTCHHHHHCC---SCEEEEESSCS----STTE--E---ES---CT-TSCSCCTTCEEEEEEESCCC-SS---
T ss_pred CeEEEECCcCCHHHHHhh---ccEEEEeCCCC----CceE--E---Ee---cc-ccCCCCCCCEeEEEEehhcc-cc---
Confidence 479999999999999884 34544444333 1111 1 11 21 11232247899999988874 22
Q ss_pred CCCCcchhheeccccccCCcEEEEEcCHH---HHHHHHHHHhhCCCeeEEeeeccCCCccEEEEEcc
Q 005959 597 HRCSTLDIFTEIDRILRPEGWVIIRDTAR---LIESARALTTRLKWDARVIEIESNSDERLLICQKP 660 (667)
Q Consensus 597 ~~c~~~~~l~E~dRiLRP~G~~i~~d~~~---~~~~~~~~~~~~~W~~~~~~~~~~~~~~~li~~K~ 660 (667)
....+|-|+-|+|+|||++++.+-.. ..+++..+++..-+++...+. ....--+++++|.
T Consensus 129 ---~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 129 ---NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL-TNSHFFLFDFQKT 191 (215)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEEC-CSTTCEEEEEEEC
T ss_pred ---CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEec-CCCeEEEEEEEec
Confidence 34678999999999999999986544 457788888888887766432 2223467778775
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.6e-06 Score=86.60 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHHHHc-CCCceEEeecc
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLER-GLPAMIGSFAS 308 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~-~~sV~gvD~S~~ml~~A~er-gl~~~~~~~da 308 (667)
....+.+.+.+....+ .+|||||||+|.++..|++++.. ...|+++|+++.|++.++++ ..++.+..+|+
T Consensus 28 ~~i~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~ 99 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERG--------ERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDA 99 (279)
T ss_dssp HHHHHHHHHHHCCCTT--------CEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCG
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECCh
Confidence 3455566666654443 79999999999999999987432 13389999999999999876 33567888999
Q ss_pred cCCCCCC
Q 005959 309 KQLPYPS 315 (667)
Q Consensus 309 ~~Lpfpd 315 (667)
..+++++
T Consensus 100 ~~~~~~~ 106 (279)
T 3uzu_A 100 LTFDFGS 106 (279)
T ss_dssp GGCCGGG
T ss_pred hcCChhH
Confidence 9988764
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.06 E-value=3.7e-06 Score=90.38 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=77.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhc---------------CCceeEEEEecCCHHHHHHHHHcCC------CceEEee---cc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGSQVQLTLERGL------PAMIGSF---AS 308 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~---------------g~~~~sV~gvD~S~~ml~~A~ergl------~~~~~~~---da 308 (667)
..-+|+|+||++|..|..+... ..+...|...|...+..+..-+.-. +..+..+ ..
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3468999999999888776654 3456788899988877765543311 2244333 33
Q ss_pred cCCCCCCCCccEEEecccccccccCHH---------------------------------HHHHHHHhcccCCeEEEEEe
Q 005959 309 KQLPYPSLSFDMLHCARCGVDWDQKDG---------------------------------ILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 309 ~~Lpfpd~sFDlV~~s~~ll~~~~d~~---------------------------------~~L~Ei~RvLKPGG~Lvis~ 355 (667)
..-.||+++||+|+|+.+ +||..+.. .+|+...+.|+|||.++++.
T Consensus 131 y~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhccCCCCceEEEEehhh-hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 446699999999999988 89974421 34888899999999999998
Q ss_pred CCCCh
Q 005959 356 PLTNP 360 (667)
Q Consensus 356 p~~~~ 360 (667)
.+...
T Consensus 210 ~gr~~ 214 (359)
T 1m6e_X 210 LGRRS 214 (359)
T ss_dssp EECSS
T ss_pred ecCCC
Confidence 76543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=6.6e-05 Score=81.18 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=59.7
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc-cC
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD-QK 333 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~-~d 333 (667)
.+||.++-+.|.++..+... ..++.+..|....+..+.+|...... ..+..+...||+|+.-.- -+-. ..
T Consensus 47 ~~~l~~n~~~g~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~d~v~~~~P-k~k~~~~ 117 (381)
T 3dmg_A 47 ERALDLNPGVGWGSLPLEGR----MAVERLETSRAAFRCLTASGLQARLA----LPWEAAAGAYDLVVLALP-AGRGTAY 117 (381)
T ss_dssp SEEEESSCTTSTTTGGGBTT----BEEEEEECBHHHHHHHHHTTCCCEEC----CGGGSCTTCEEEEEEECC-GGGCHHH
T ss_pred CcEEEecCCCCccccccCCC----CceEEEeCcHHHHHHHHHcCCCcccc----CCccCCcCCCCEEEEECC-cchhHHH
Confidence 68999999999887777533 23455555665555566667665331 112234568999875411 0000 11
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 005959 334 DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....|.++.+.|+|||.+++...
T Consensus 118 ~~~~l~~~~~~l~~g~~i~~~g~ 140 (381)
T 3dmg_A 118 VQASLVAAARALRMGGRLYLAGD 140 (381)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEEEc
Confidence 35688899999999999998864
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.7e-06 Score=87.86 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=67.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----ccc----ccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV----GVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gli----g~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++..|.+. .+ .+|+-+|-. ..+..+-++ |+- -+..|+.+ + +.+||+|.+..
T Consensus 74 ~~vLDiGcG~G~~~~~la~~-~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---~~~fD~v~~~~ 145 (302)
T 3hem_A 74 MTLLDIGCGWGSTMRHAVAE-YD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-F---DEPVDRIVSLG 145 (302)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-C---CCCCSEEEEES
T ss_pred CEEEEeeccCcHHHHHHHHh-CC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH-c---CCCccEEEEcc
Confidence 47999999999999999873 13 244555544 556555444 432 22334432 3 78999999999
Q ss_pred ccccccCCC---CCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHR---HRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~---~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+|.+..... ..-....+|-|+-|+|+|||.+++.+
T Consensus 146 ~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 146 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 988774100 11334578999999999999999863
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.9e-06 Score=82.03 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=63.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc-cc-cccccccCCCCCCCccccccccC-c
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VG-VLHDWCEAFPTYPRTYDLVHAEG-L 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl-ig-~~~~~c~~f~typ~tyDl~H~~~-~ 588 (667)
.+|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ |+ +- +..|.. .++ ++.+||+|.+.. +
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~~~-----~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~~ 111 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPKFK-----NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NLN-INRKFDLITCCLDS 111 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS-----EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GCC-CSCCEEEEEECTTG
T ss_pred CeEEEeCCCCCHHHHHHHHCCC-----cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc-cCC-ccCCceEEEEcCcc
Confidence 4799999999999999987422 34555544 444444433 21 11 122222 233 348899999998 8
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
|.+.. ..-....+|-++-|+|+|||.+++
T Consensus 112 l~~~~---~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 112 TNYII---DSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGCC---SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccC---CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 87763 223456789999999999999998
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=77.96 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=75.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccc---cccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG---VLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig---~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++.+|.+ .+. .+|+-+|-. ..+..+-++ |+-. +..|+ ++..+.+||+|.++..
T Consensus 62 ~~vLDiG~G~G~~~~~l~~--~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~fD~i~~~~~ 134 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHK--LGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSL---LADVDGKFDLIVANIL 134 (205)
T ss_dssp CEEEEETCTTSHHHHHHHH--TTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESST---TTTCCSCEEEEEEESC
T ss_pred CEEEEECCCCCHHHHHHHH--CCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccc---cccCCCCceEEEECCc
Confidence 4799999999999999886 322 134444543 444444443 4322 22233 2233589999999876
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc-CHHHHHHHHHHHhhCCCeeEEe
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
+... ..++-++-|+|+|||++++.+ .....+.+..++....++....
T Consensus 135 ~~~~---------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~ 182 (205)
T 3grz_A 135 AEIL---------LDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLK 182 (205)
T ss_dssp HHHH---------HHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEE
T ss_pred HHHH---------HHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEe
Confidence 6543 368999999999999999974 3344667777777777776554
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=2e-05 Score=90.36 Aligned_cols=120 Identities=16% Similarity=0.116 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchH---HHHHhhcCCceeEEEEecCCHHHHHHHH----HcCC--Cc
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSF---GAHLFSKELLTMCIANYEASGSQVQLTL----ERGL--PA 301 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~---t~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl--~~ 301 (667)
..|.+.+.+.+...............|||||||+|.+ +...++++...+.|+++|.++. ...|+ +.+. .+
T Consensus 335 ~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkV 413 (637)
T 4gqb_A 335 SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQV 413 (637)
T ss_dssp HHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGE
T ss_pred HHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeE
Confidence 4555566655532211111112345799999999988 5555555545668999999974 33333 2333 46
Q ss_pred eEEeecccCCCCCCCCccEEEecccccccc-cCHHHHHHHHHhcccCCeEEE
Q 005959 302 MIGSFASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 302 ~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
.++.++++.+..| +.+|+|++.....-.. +.....+....|.|||||.++
T Consensus 414 tVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 414 TVVSSDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEeCcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 6788899998887 4899999974322111 223357788899999999976
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=79.49 Aligned_cols=138 Identities=13% Similarity=0.081 Sum_probs=87.7
Q ss_pred eEEEecccc-chhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc-ccc-cccc--ccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAH-FGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VGV-LHDW--CEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~-~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl-ig~-~~~~--c~~f~typ~tyDl~H~~ 586 (667)
.+|||+||| .|.++.+|... . .-+|+-+|-. ..+..+-+ .|+ +-+ ..|+ -++++ +.+||+|-++
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~--~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~I~~n 130 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKF--F--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVV--EGTFDVIFSA 130 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHH--H--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTC--CSCEEEEEEC
T ss_pred CEEEEcCCCHHHHHHHHHHHh--c--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcc--cCceeEEEEC
Confidence 579999999 99999998873 1 1244444543 34443332 243 222 2232 23333 2899999988
Q ss_pred CccccccCC-------------CCCCCcchhheeccccccCCcEEEE--EcCHHHHHHHHHHHhhCCCeeEEeeeccCC-
Q 005959 587 GLLSLESGH-------------RHRCSTLDIFTEIDRILRPEGWVII--RDTARLIESARALTTRLKWDARVIEIESNS- 650 (667)
Q Consensus 587 ~~~~~~~~~-------------~~~c~~~~~l~E~dRiLRP~G~~i~--~d~~~~~~~~~~~~~~~~W~~~~~~~~~~~- 650 (667)
-.|...... .....+..++-++-|+|+|||++++ ....+..+++.++++...|++.......+.
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~~ 210 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGTR 210 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC-
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCCe
Confidence 665432200 0111135688899999999999998 445577888999999999988877665554
Q ss_pred CccEEEEEcc
Q 005959 651 DERLLICQKP 660 (667)
Q Consensus 651 ~~~~li~~K~ 660 (667)
--.+++++|.
T Consensus 211 ~~~~l~f~~~ 220 (230)
T 3evz_A 211 WRHSLIFFKG 220 (230)
T ss_dssp CEEEEEEECC
T ss_pred EEEEEEEecc
Confidence 3567777764
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-05 Score=79.83 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-CCCceEEeeccc
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASK 309 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-gl~~~~~~~da~ 309 (667)
....+.+.+.+.... ..+|||||||+|.++..|++++ ...++++|.++.|++.++++ ..++.+..+|+.
T Consensus 17 ~~i~~~iv~~~~~~~--------~~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~ 86 (249)
T 3ftd_A 17 EGVLKKIAEELNIEE--------GNTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSIGDERLEVINEDAS 86 (249)
T ss_dssp HHHHHHHHHHTTCCT--------TCEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTT
T ss_pred HHHHHHHHHhcCCCC--------cCEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhccCCCeEEEEcchh
Confidence 345556666665433 3799999999999999999884 35799999999999999876 224578889999
Q ss_pred CCCCCCCC-ccEEEecc
Q 005959 310 QLPYPSLS-FDMLHCAR 325 (667)
Q Consensus 310 ~Lpfpd~s-FDlV~~s~ 325 (667)
.+++++.. ...|+++.
T Consensus 87 ~~~~~~~~~~~~vv~Nl 103 (249)
T 3ftd_A 87 KFPFCSLGKELKVVGNL 103 (249)
T ss_dssp TCCGGGSCSSEEEEEEC
T ss_pred hCChhHccCCcEEEEEC
Confidence 98887532 22555553
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-06 Score=86.95 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=81.2
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc-----ccccccccccCCCCCCCccccccccCcc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----FVGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG-----lig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
-.+|||+|||.|.++..|++.. .-+|+-+|-. ..+..+-++- +--+..|..+ ++.-+.+||+|.+..++
T Consensus 94 ~~~vLDiG~G~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l 168 (254)
T 1xtp_A 94 TSRALDCGAGIGRITKNLLTKL----YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMET-ATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHH----CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGG-CCCCSSCEEEEEEESCG
T ss_pred CCEEEEECCCcCHHHHHHHHhh----cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHH-CCCCCCCeEEEEEcchh
Confidence 4589999999999999998631 1134444543 4555554442 1112233332 33324799999999988
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcCH----------------HHHHHHHHHHhhCCCeeEEeee
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEI 646 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~ 646 (667)
.++. . -....+|-|+-|+|+|||++++.+.. ...++++++++.--++......
T Consensus 169 ~~~~---~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 169 IYLT---D-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp GGSC---H-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred hhCC---H-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 7763 1 23557899999999999999997631 1246778888888888765543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-05 Score=87.17 Aligned_cols=96 Identities=16% Similarity=0.059 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-------------------CCC-ceEEeecccCCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-------------------GLP-AMIGSFASKQLPY 313 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-------------------gl~-~~~~~~da~~Lpf 313 (667)
+.+|||+|||+|.++..++++. ....|+++|.++.+++.++++ ++. +.+..+|+..+..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 4789999999999999999872 234699999999999877643 443 5666677654421
Q ss_pred -CCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 314 -PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 314 -pd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
..++||+|++.-- .....++..+.+.|||||.++++.
T Consensus 127 ~~~~~fD~I~lDP~-----~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPF-----GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCS-----SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCC-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1357999996521 123578999999999999988875
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.8e-06 Score=79.60 Aligned_cols=142 Identities=11% Similarity=-0.000 Sum_probs=79.2
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----c--ccccccccccCCCC---CCCccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G--FVGVLHDWCEAFPT---YPRTYDLVHA 585 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----G--lig~~~~~c~~f~t---yp~tyDl~H~ 585 (667)
=.+|||+|||.|.++.+|.+.... .+|+-+|-. ..+..+-++ | +-=+..|..++++. .+.+||+|.+
T Consensus 31 ~~~vLDiG~G~G~~~~~l~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 31 GTRVIDVGTGSGCIAVSIALACPG---VSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp TEEEEEEESSBCHHHHHHHHHCTT---EEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCEEEEecCCHhHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 358999999999999999874212 133333332 223222221 2 22233455554442 2378999999
Q ss_pred cCccccccCC----------CCCCC----------cchhheeccccccCCcE-EEEEcCHHHHHHHHHHHh--hCCCeeE
Q 005959 586 EGLLSLESGH----------RHRCS----------TLDIFTEIDRILRPEGW-VIIRDTARLIESARALTT--RLKWDAR 642 (667)
Q Consensus 586 ~~~~~~~~~~----------~~~c~----------~~~~l~E~dRiLRP~G~-~i~~d~~~~~~~~~~~~~--~~~W~~~ 642 (667)
+--|...... ..... +..++-++-|+|+|||+ +++.-.....+++..+.. .-.|...
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence 6554321100 00011 15788999999999999 777555555667777777 5556543
Q ss_pred EeeeccCCCccEEEEEcc
Q 005959 643 VIEIESNSDERLLICQKP 660 (667)
Q Consensus 643 ~~~~~~~~~~~~li~~K~ 660 (667)
....+..+..++++++|.
T Consensus 188 ~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 188 RKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp CEEECTTSCEEEEEEEEC
T ss_pred EEEEecCCCEEEEEEEEc
Confidence 333334445788888764
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.9e-06 Score=82.71 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=68.6
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----cccc-ccccccCCCCCCCccccccccCc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGV-LHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----lig~-~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.-.+|||+|||.|.++.+|.+.. -+|+-+|-. ..+..+-++. -+-+ ..|. +.++ -+.+||+|.|..+
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~ 123 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHC-----KRLTVIDVMPRAIGRACQRTKRWSHISWAATDI-LQFS-TAELFDLIVVAEV 123 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGE-----EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCT-TTCC-CSCCEEEEEEESC
T ss_pred CCCcEEEEcCCCCHHHHHHHHcC-----CEEEEEECCHHHHHHHHHhcccCCCeEEEEcch-hhCC-CCCCccEEEEccH
Confidence 45789999999999999998731 366666664 5555554442 1222 2232 2233 2589999999999
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.+.. +.-.+..+|-|+-|+|+|||++++.+
T Consensus 124 l~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 124 LYYLE---DMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp GGGSS---SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHhCC---CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 88765 33344567999999999999999964
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-06 Score=86.08 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=65.4
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cc-cccccccCCCCCCCccccccccC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
-.+|||+|||.|.++.+|.+... +|+-+|-. ..+..+-+ .|+ +- +..|. +.++.-+.+||+|.+..
T Consensus 22 ~~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~~~~ 95 (239)
T 1xxl_A 22 EHRVLDIGAGAGHTALAFSPYVQ-----ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPFPDDSFDIITCRY 95 (239)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCSCTTCEEEEEEES
T ss_pred CCEEEEEccCcCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc-ccCCCCCCcEEEEEECC
Confidence 35799999999999999987422 45555544 44444333 233 11 22233 33443348999999998
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++.++. +...+|-|+-|+|+|||++++.+
T Consensus 96 ~l~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 96 AAHHFS------DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp CGGGCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcc------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 887664 34678999999999999999964
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.9e-06 Score=91.81 Aligned_cols=153 Identities=8% Similarity=0.072 Sum_probs=105.0
Q ss_pred cccCccccccchhhhHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEeccccchhhhhhhhhcCCCeEEEEee
Q 005959 467 YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVV 546 (667)
Q Consensus 467 ~~~~~~~f~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~ 546 (667)
+......|...+..|......+.+.+-..+. + ..=..|||+|||.|.++.+|.+. .. +|+
T Consensus 74 y~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~--~~~~~VLDiGcG~G~~~~~l~~~--g~---~v~ 133 (416)
T 4e2x_A 74 FHEVYPYHSSGSSVMREHFAMLARDFLATEL-------------T--GPDPFIVEIGCNDGIMLRTIQEA--GV---RHL 133 (416)
T ss_dssp SSTTCCCCGGGCHHHHHHHHHHHHHHHHTTT-------------C--SSSCEEEEETCTTTTTHHHHHHT--TC---EEE
T ss_pred ccCCccCcCcCCHHHHHHHHHHHHHHHHHhC-------------C--CCCCEEEEecCCCCHHHHHHHHc--CC---cEE
Confidence 3334555667778898888888776544431 1 12348999999999999999873 32 566
Q ss_pred cCCCC-CchhhHhccccccccccc----ccCCCCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 547 PTIGT-NHLPMILDRGFVGVLHDW----CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 547 p~~~~-~~l~~~~~RGlig~~~~~----c~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
-+|-. +.+..+-++|+-.....+ .+.++.-+.+||+|.+.++|.+.. +...+|-|+-|+|+|||++++.
T Consensus 134 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~------d~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 134 GFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIP------YVQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp EECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCT------THHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhcC------CHHHHHHHHHHHcCCCeEEEEE
Confidence 66665 778888888753322111 111221138999999999998774 3568999999999999999997
Q ss_pred cCH--------------------HHHHHHHHHHhhCCCeeEEee
Q 005959 622 DTA--------------------RLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 622 d~~--------------------~~~~~~~~~~~~~~W~~~~~~ 645 (667)
... ...++++.+++.--+++....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~ 251 (416)
T 4e2x_A 208 DPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQ 251 (416)
T ss_dssp EECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEE
T ss_pred eCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEE
Confidence 421 113577888888888766554
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.7e-06 Score=83.30 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=80.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccc----cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG----VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig----~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++..|.+. . .+|+-+|-. ..+..+-++ |... +..|..+.. .+.+||+|.+..
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~--~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~ 140 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASP--E---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR--PTELFDLIFDYV 140 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBT--T---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC--CSSCEEEEEEES
T ss_pred CCEEEeCCCCCHHHHHHHhC--C---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC--CCCCeeEEEECh
Confidence 38999999999999999863 2 234555544 444444333 2211 223333322 236899999998
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcCH-----------HHHHHHHHHHhhCCCeeEEeeec
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------RLIESARALTTRLKWDARVIEIE 647 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------~~~~~~~~~~~~~~W~~~~~~~~ 647 (667)
+|.... ......+|-++-|+|+|||++++.+-. -..++++.+++.--|+....+..
T Consensus 141 ~l~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 141 FFCAIE----PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp STTTSC----GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred hhhcCC----HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 887653 234567899999999999999985321 13578888899888987765443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.1e-05 Score=76.64 Aligned_cols=132 Identities=15% Similarity=0.194 Sum_probs=83.7
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc---cccccccccccCCCCCCCccccccccCcccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R---Glig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
-..|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++ .+--+..|..+ ++. +.+||+|.+..++..
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~-~~~-~~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGR-----TVYGIEPSREMRMIAKEKLPKEFSITEGDFLS-FEV-PTSIDTIVSTYAFHH 118 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTC-----EEEEECSCHHHHHHHHHHSCTTCCEESCCSSS-CCC-CSCCSEEEEESCGGG
T ss_pred CCeEEEeCCCCCHHHHHHHhCCC-----eEEEEeCCHHHHHHHHHhCCCceEEEeCChhh-cCC-CCCeEEEEECcchhc
Confidence 35899999999999999987322 44555544 445545444 22222223322 232 389999999998877
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEcC----HH---------------------------HHHHHHHHHhhCCCe
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT----AR---------------------------LIESARALTTRLKWD 640 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----~~---------------------------~~~~~~~~~~~~~W~ 640 (667)
... . ....+|-|+-|+|+|||++++.+. .. ..++++++++.--++
T Consensus 119 ~~~---~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 194 (220)
T 3hnr_A 119 LTD---D-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194 (220)
T ss_dssp SCH---H-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEE
T ss_pred CCh---H-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCE
Confidence 651 1 112388999999999999999742 11 126677788888887
Q ss_pred eEEeeeccCCCccEEEEEcc
Q 005959 641 ARVIEIESNSDERLLICQKP 660 (667)
Q Consensus 641 ~~~~~~~~~~~~~~li~~K~ 660 (667)
+..... .+-.=++.++|+
T Consensus 195 v~~~~~--~~~~w~~~~~~~ 212 (220)
T 3hnr_A 195 VTFTRL--NHFVWVMEATKQ 212 (220)
T ss_dssp EEEEEC--SSSEEEEEEEEC
T ss_pred EEEeec--cceEEEEeehhh
Confidence 665532 222335555554
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-06 Score=85.57 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=63.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc---c-cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---G-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli---g-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++.+|.+. ... +|+-+|-. ..+..+-+ .|+- - +..|+.+ ++. +.+||+|.|.+
T Consensus 38 ~~VLDiGcG~G~~~~~la~~-~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~V~~~~ 111 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARD-HGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-YVA-NEKCDVAACVG 111 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHH-TCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-CCC-SSCEEEEEEES
T ss_pred CEEEEECCCCCHHHHHHHHh-cCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-CCc-CCCCCEEEECC
Confidence 47999999999999999863 121 33444443 44444433 3431 1 2233332 333 68999999988
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++.... +...+|-|+-|+|||||++++.+
T Consensus 112 ~~~~~~------~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 112 ATWIAG------GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp CGGGTS------SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred ChHhcC------CHHHHHHHHHHHcCCCeEEEEec
Confidence 776553 35678999999999999999964
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=7.6e-06 Score=92.46 Aligned_cols=103 Identities=12% Similarity=0.014 Sum_probs=74.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---C--------------ceeEEEEecCCHHHHHHHHHc----CCC------ceEEee
Q 005959 254 VRTILDIGCGYGSFGAHLFSKE---L--------------LTMCIANYEASGSQVQLTLER----GLP------AMIGSF 306 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g---~--------------~~~sV~gvD~S~~ml~~A~er----gl~------~~~~~~ 306 (667)
..+|||.+||+|.++..+++.- . ....++|+|+++.+++.|+.+ ++. ..+.++
T Consensus 170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g 249 (541)
T 2ar0_A 170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG 249 (541)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence 4789999999999988776541 0 123699999999999988753 444 456767
Q ss_pred cccCCC-CCCCCccEEEecccccccc------------cC-HHHHHHHHHhcccCCeEEEEEeC
Q 005959 307 ASKQLP-YPSLSFDMLHCARCGVDWD------------QK-DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 307 da~~Lp-fpd~sFDlV~~s~~ll~~~------------~d-~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+...+ .+.+.||+|+++.-..... .+ ...++..+.+.|||||++++..|
T Consensus 250 DtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 250 NTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 754433 3457899999985422111 01 13689999999999999999877
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=5.2e-06 Score=86.21 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=65.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCCCccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
.+|||+|||.|.++..|.+. ... +|+-+|-. ..+..+-++ |+-..+.-.+..+..+|.+||+|.+..+|.+
T Consensus 92 ~~vLDiGcG~G~~~~~la~~-~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~ 167 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVER-FDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH 167 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHH-HCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred CEEEEEcccchHHHHHHHHH-CCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHh
Confidence 37999999999999999863 122 44555544 555555544 4422111112222333589999999998876
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.. .-....+|-|+-|+|+|||.+++.+
T Consensus 168 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 168 FG----HENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp TC----GGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cC----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 63 1245578999999999999999863
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.9e-05 Score=82.49 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=76.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc--ccc----cccccc-cCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVG----VLHDWC-EAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG--lig----~~~~~c-~~f~typ~tyDl~H~~~~ 588 (667)
++|||+|||+|+|+..|++.+ . -.|+-+|-. ++|...+.+- ++. -+.... +.++. .+||++-|+-.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~g--a--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~--~~fD~v~~d~s 160 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNG--A--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTE--GLPSFASIDVS 160 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTT--C--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTT--CCCSEEEECCS
T ss_pred cEEEecCCCccHHHHHHHhCC--C--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCC--CCCCEEEEEee
Confidence 589999999999999998732 1 134555554 7776644321 110 111111 22332 45999999888
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcC----------------------HHHHHHHHHHHhhCCCeeEEee
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT----------------------ARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----------------------~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
|... ..+|-|+-|+|+|||.+|+--+ ...++++..++...-|.+....
T Consensus 161 f~sl---------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 161 FISL---------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp SSCG---------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HhhH---------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 7644 3699999999999999987410 1367888899999999877654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.4e-05 Score=75.06 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=77.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..|.+. .+- ..|+-+|-. ..+..+-++ |+ +-+..|..+.++..+.+||+|.++..
T Consensus 27 ~~vldiG~G~G~~~~~l~~~-~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 103 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRS-TPQ--TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGG 103 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTT-SSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-
T ss_pred CeEEEeCCCCCHHHHHHHHH-CCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCc
Confidence 58999999999999999863 221 234444543 445444433 43 22334555666665588999998777
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCeeEEe
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 644 (667)
+.. ..++-++-|+|+|||.+++.+. .+....+..+.+...+++...
T Consensus 104 ~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 104 LTA----------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp TTC----------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEEE
T ss_pred ccH----------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEEE
Confidence 654 3589999999999999999764 455667777777776665543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-06 Score=81.97 Aligned_cols=137 Identities=16% Similarity=0.132 Sum_probs=78.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-----cccccccccccCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-----Glig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.+|||+|||.|.++..|.+.... +|+-+|-. ..+..+-++ .+--+..|..+ ++.-+.+||+|.+..+|.
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~----~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP----NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK-LDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC----CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS-CCSCSSCEEEEEEESHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC----cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc-CCCCCCcccEEEECcchh
Confidence 47999999999999999874321 33334433 333333332 12122233333 222237999999988886
Q ss_pred cccCCC---------CCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHH--hhCCCeeEEeeeccCCCccEEEEEc
Q 005959 591 LESGHR---------HRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALT--TRLKWDARVIEIESNSDERLLICQK 659 (667)
Q Consensus 591 ~~~~~~---------~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~--~~~~W~~~~~~~~~~~~~~~li~~K 659 (667)
...+.. +......+|-|+-|+|+|||.+++.+-...- ..+.+. ....|+......+++..-.+.+++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH-FRTRHYAQAYYGWSLRHATYGSGFHFHLYLMHK 197 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH-HHHHHHCCGGGCEEEEEEEESGGGCEEEEEEEE
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH-HHHHHHhccccCcEEEEEEecCcceEEEEEEEe
Confidence 543100 0123468999999999999999998654321 112222 3346876655443333334555554
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.95 E-value=3.5e-06 Score=84.76 Aligned_cols=95 Identities=21% Similarity=0.161 Sum_probs=65.0
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cccccccccCCCCCCCccccccccC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
-.+|||+|||.|.++..|.+... .|+-+|-. ..+..+-++ |+ --+..|..+ +|.-+.+||+|++..
T Consensus 38 ~~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 38 NEEVLDVATGGGHVANAFAPFVK-----KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ-MPFTDERFHIVTCRI 111 (260)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C-CCSCTTCEEEEEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh-CCCCCCCEEEEEEhh
Confidence 45899999999999999987422 55555544 455444332 43 112233322 332238999999998
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++..+. +...+|-|+-|+|||||++++.+
T Consensus 112 ~l~~~~------d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 112 AAHHFP------NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp CGGGCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHhcC------CHHHHHHHHHHHcCCCCEEEEEE
Confidence 887664 34578999999999999999963
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-06 Score=87.30 Aligned_cols=95 Identities=23% Similarity=0.364 Sum_probs=65.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cc-cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++..|.+. .+. +|+-+|-. ..+..+-+ .|+ +- +..|..+ +|.-+.+||+|++..
T Consensus 84 ~~vLDiGcG~G~~~~~l~~~-~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 84 AKGLDLGAGYGGAARFLVRK-FGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-IPCEDNSYDFIWSQD 158 (297)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-CSSCTTCEEEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHH-hCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc-CCCCCCCEeEEEecc
Confidence 48999999999999999873 122 45555554 55554443 343 11 2223322 332237999999999
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++.++. + ...+|-|+-|+|||||++++.+
T Consensus 159 ~l~~~~---~---~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 159 AFLHSP---D---KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp CGGGCS---C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcC---C---HHHHHHHHHHHcCCCeEEEEEE
Confidence 988775 3 5689999999999999999974
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.95 E-value=6.9e-06 Score=77.67 Aligned_cols=134 Identities=15% Similarity=0.108 Sum_probs=83.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc--ccccccccccCCCCCCCcccccccc-Cccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHAE-GLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG--lig~~~~~c~~f~typ~tyDl~H~~-~~~~~~ 592 (667)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++. +--+..|..+ ++.-+.+||+|.++ .++...
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH-----DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-DQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-SCCCCCCEEEEEECCCCGGGS
T ss_pred CeEEEECCCCCHHHHHHHHCCC-----cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-CCCCCCceeEEEECCcHHhhc
Confidence 4799999999999999987422 44444443 3344443332 2112223332 22213789999998 566544
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEcCH---HHHHHHHHHHhhCCCeeEEeeecc-------CCCccEEEEEcc
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---RLIESARALTTRLKWDARVIEIES-------NSDERLLICQKP 660 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~li~~K~ 660 (667)
. .-....+|-++-|+|+|||.+++.... ...+++..+++...+++....... ...--++|++|+
T Consensus 122 ~----~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 122 A----EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp C----HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred C----hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 2 122357889999999999999996432 246677778888788766553221 112336777764
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.7e-05 Score=86.28 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=72.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---ceEEeecccCCC--CCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLP--YPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~Lp--fpd~sFDlV~~s 324 (667)
+.+|||++||+|.++..++.+.-....|+++|.++.+++.++++ ++. +.+..+|+..+- ...+.||+|++.
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 47899999999999999998521235799999999999887653 553 566777764431 124579999987
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
- . .....++..+.+.|+|||+++++.
T Consensus 133 P--~---g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P--F---GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C--S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred C--C---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 4 1 123468899999999999988876
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=3.6e-06 Score=84.10 Aligned_cols=116 Identities=13% Similarity=0.193 Sum_probs=77.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc----ccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli----g~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|.++..|.+.. +. .|+-+|-. ..+..+-+ .|+- -+..|. +.++.-+.+||+|++.+
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~-~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYV-KG---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHC-CS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTCEEEEEEES
T ss_pred CeEEEeCCCCCHHHHHHHHhC-CC---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCCEEEEEecC
Confidence 389999999999999998742 32 44555544 45554433 3432 223344 44443348999999998
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcCH-----------H----------HHHHHHHHHhhCCCeeEEe
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------R----------LIESARALTTRLKWDARVI 644 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------~----------~~~~~~~~~~~~~W~~~~~ 644 (667)
++.+. +...+|-|+-|+|||||++++.+.. . ..+++.++++.--++...+
T Consensus 123 ~l~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 123 AIYNI-------GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp CSCCC-------CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred hHhhc-------CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 87654 3457899999999999999997521 1 2355667777777765543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.2e-06 Score=84.80 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=75.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc-cc-cccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl-ig-~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
..|||+|||.|.++.+|.+.+. +|+-+|-. ..+..+-+ .|+ +- +..|..+ ++. +.+||+|.+..+|
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~-~~~fD~i~~~~~~ 194 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY-----DVTSWDHNENSIAFLNETKEKENLNISTALYDINA-ANI-QENYDFIVSTVVF 194 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGG-CCC-CSCEEEEEECSSG
T ss_pred CcEEEECCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccc-ccc-cCCccEEEEccch
Confidence 4799999999999999997422 45555544 44443333 343 11 1223322 232 6899999999998
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcC--------------HHHHHHHHHHHhhCCCeeEEee
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--------------ARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--------------~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
.... .-.+..+|-++-|+|+|||++++-.. .-.-++++++... |++...+
T Consensus 195 ~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 195 MFLN----RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp GGSC----GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhCC----HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 7653 23455799999999999999777321 0113456666665 8877654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.1e-05 Score=74.67 Aligned_cols=130 Identities=16% Similarity=0.129 Sum_probs=86.1
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCCCCccccccccCccccccCCC
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 596 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~ 596 (667)
.|||+|||.|.++.+|.+. - +|+-+|-. ..+.. ...+--+..|..++++. .+||+|-++..|.......
T Consensus 26 ~vLD~GcG~G~~~~~l~~~--~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~~~~--~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKR--N----TVVSTDLNIRALES--HRGGNLVRADLLCSINQ--ESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp EEEEETCTTCHHHHHHTTT--S----EEEEEESCHHHHHT--CSSSCEEECSTTTTBCG--GGCSEEEECCCCBTTCCCT
T ss_pred eEEEeccCccHHHHHHHhc--C----cEEEEECCHHHHhc--ccCCeEEECChhhhccc--CCCCEEEECCCCccCCccc
Confidence 7999999999999999863 2 66666654 33333 33333344555555553 8999999987776433100
Q ss_pred ---CCCCcchhheeccccccCCcEEEEEc-CHHHHHHHHHHHhhCCCeeEEeeeccCCCccEEEEE
Q 005959 597 ---HRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVIEIESNSDERLLICQ 658 (667)
Q Consensus 597 ---~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~li~~ 658 (667)
.......++-++=|.| |||.+++.. .....+++.++++...|+.........+.+++.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~ 160 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYIIK 160 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEE
Confidence 1112235666666777 999999965 335577888888899999877765555566666554
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.3e-06 Score=85.61 Aligned_cols=96 Identities=15% Similarity=0.250 Sum_probs=64.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--ccc-ccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGV-LHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig~-~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..|.+..... .|+-+|-. ..+..+-++ |+ +-+ ..|.. .++.-+.+||+|++..+
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANIF-SLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGG-GCCSCTTCEEEEEEESC
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccc-cCCCCCCCeeEEEEech
Confidence 589999999999999998741122 33444443 444444333 33 111 22322 23333489999999998
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.... +...+|-++-|+|+|||++++.+
T Consensus 115 l~~~~------~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 115 LEHLQ------SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGGCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 88765 23478999999999999999964
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=7.9e-06 Score=77.07 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=75.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc----cccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF----VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl----ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++..|.... -+|+-+|.. ..+..+-+ .|+ --+..|+.+.++.. .+||+|.++.
T Consensus 35 ~~vldiG~G~G~~~~~l~~~~-----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~ 108 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGRV-----RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGG 108 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTTS-----SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESC
T ss_pred CEEEEECCCCCHHHHHHHHhc-----CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECC
Confidence 489999999999999998632 245555543 34443333 232 11233444434432 4799999877
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCeeEEe
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 644 (667)
.+... ..++-++-|+|+|||.+++.+. .+...++.++++...|++...
T Consensus 109 ~~~~~---------~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 109 SGGEL---------QEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (192)
T ss_dssp CTTCH---------HHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred chHHH---------HHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEEE
Confidence 65433 4689999999999999999753 566778888888777765544
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.3e-06 Score=83.77 Aligned_cols=98 Identities=15% Similarity=0.250 Sum_probs=64.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc-------cccccccccCCCCCCCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-------VGVLHDWCEAFPTYPRTYDLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl-------ig~~~~~c~~f~typ~tyDl~H 584 (667)
.+|||+|||.|.++.+|.+.+. +|+-+|-. ..+..+-+ .|+ +-+...=.+.++.-+.+||+|.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY-----SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 4799999999999999997422 44444543 44444433 232 1111111223333348999999
Q ss_pred ccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 585 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 585 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+..++.... +.-....+|-++-|+|||||.+++.+
T Consensus 107 ~~~~l~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 107 MQAFLTSVP---DPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp EESCGGGCC---CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcchhhcCC---CHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 998888765 33333468999999999999999964
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=7.8e-06 Score=81.77 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=78.2
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----c-----------------------------
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G----------------------------- 561 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----G----------------------------- 561 (667)
-.+|||+|||.|.++..|... .. -+|+-+|-. ..+..+-++ +
T Consensus 57 ~~~vLDlGcG~G~~~~~l~~~--~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 57 GELLIDIGSGPTIYQLLSACE--SF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp EEEEEEESCTTCCGGGTTGGG--TE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred CCEEEEECCCccHHHHHHhhc--cc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 468999999999999988763 22 345555544 334433221 1
Q ss_pred ---c-cccccccccCCCCCC---CccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH----------
Q 005959 562 ---F-VGVLHDWCEAFPTYP---RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------- 624 (667)
Q Consensus 562 ---l-ig~~~~~c~~f~typ---~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------- 624 (667)
+ --+..|..+.-+.-+ .+||+|.+..++..... +.-....+|-|+-|+|+|||++|+.+..
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 210 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACP--DLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQ 210 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcC--ChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCc
Confidence 1 112233333222123 79999999988874331 1123457899999999999999997511
Q ss_pred ------HHHHHHHHHHhhCCCeeEEeee
Q 005959 625 ------RLIESARALTTRLKWDARVIEI 646 (667)
Q Consensus 625 ------~~~~~~~~~~~~~~W~~~~~~~ 646 (667)
-..+++..++...-+++.....
T Consensus 211 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 211 KFSSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp EEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 1245777888877787665543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.89 E-value=5.2e-06 Score=83.96 Aligned_cols=93 Identities=19% Similarity=0.143 Sum_probs=61.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc-ccccccccccCCCCCCCccccccccCcccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG-lig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
-.+|||+|||.|.++..|.+.+.. |+-+|-. ..+..+-++. +--+..|. +.++.-+.+||+||+..++.++.
T Consensus 35 ~~~vLDiGcG~G~~~~~l~~~~~~-----v~gvD~s~~~~~~a~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~ 108 (261)
T 3ege_A 35 GSVIADIGAGTGGYSVALANQGLF-----VYAVEPSIVMRQQAVVHPQVEWFTGYA-ENLALPDKSVDGVISILAIHHFS 108 (261)
T ss_dssp TCEEEEETCTTSHHHHHHHTTTCE-----EEEECSCHHHHHSSCCCTTEEEECCCT-TSCCSCTTCBSEEEEESCGGGCS
T ss_pred CCEEEEEcCcccHHHHHHHhCCCE-----EEEEeCCHHHHHHHHhccCCEEEECch-hhCCCCCCCEeEEEEcchHhhcc
Confidence 358999999999999999874333 3333332 3333333332 21122233 33443348999999999887664
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEE
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+...+|-|+-|+|| ||++++.
T Consensus 109 ------~~~~~l~~~~~~Lk-gG~~~~~ 129 (261)
T 3ege_A 109 ------HLEKSFQEMQRIIR-DGTIVLL 129 (261)
T ss_dssp ------SHHHHHHHHHHHBC-SSCEEEE
T ss_pred ------CHHHHHHHHHHHhC-CcEEEEE
Confidence 34578999999999 9988875
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.8e-06 Score=81.65 Aligned_cols=118 Identities=23% Similarity=0.206 Sum_probs=81.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-cccccccccccCCCCCCCccccccccCccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 594 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-Glig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~ 594 (667)
..|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++ ++--+..|.. .++ .+.+||+|.|..++....
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~~- 116 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF-----DVDATDGSPELAAEASRRLGRPVRTMLFH-QLD-AIDAYDAVWAHACLLHVP- 116 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHTSCCEECCGG-GCC-CCSCEEEEEECSCGGGSC-
T ss_pred CcEEEECCCCCHHHHHHHHcCC-----eEEEECCCHHHHHHHHHhcCCceEEeeec-cCC-CCCcEEEEEecCchhhcC-
Confidence 4799999999999999997422 44555544 555555555 4322333332 234 458999999998887653
Q ss_pred CCCCCCcchhheeccccccCCcEEEEEcCH---------------HHHHHHHHHHhhCC-CeeEEee
Q 005959 595 HRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------RLIESARALTTRLK-WDARVIE 645 (667)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------------~~~~~~~~~~~~~~-W~~~~~~ 645 (667)
.-....+|-|+-|+|+|||++++.... ...++++.+++.-- ++.....
T Consensus 117 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 117 ---RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp ---HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 124457899999999999999986221 24677888888887 8876554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.89 E-value=8.6e-06 Score=81.40 Aligned_cols=94 Identities=21% Similarity=0.191 Sum_probs=65.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----ccccccccccCCCCCCCccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----lig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
.+|||+|||.|.++.+|.+.... +|+-+|-. ..+..+-++. +--+..|. +.++.-+.+||+|.|..++..
T Consensus 46 ~~vLD~GcG~G~~~~~l~~~~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 46 KTVLDLGCGFGWHCIYAAEHGAK----KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEEEEEEESCGGG
T ss_pred CEEEEECCCCCHHHHHHHHcCCC----EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeEEEEEchhhhh
Confidence 58999999999999999874321 44555543 4555554442 21122232 234433489999999998876
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.. ....+|-|+-|+|+|||.+++.
T Consensus 121 ~~------~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 121 IA------SFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp CS------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hh------hHHHHHHHHHHHcCCCcEEEEE
Confidence 64 3567899999999999999996
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=4.7e-06 Score=84.24 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=76.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----ccc---c-cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV---G-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gli---g-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++..|.+. ... +|+-+|-. ..+..+-++ |+- - +..|+ +.++.-+.+||+|+|.+
T Consensus 48 ~~vLDiGcG~G~~~~~la~~-~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLAGH-VTG---QVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CEEEEETCTTCHHHHHHHTT-CSS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHhc-cCC---EEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEcC
Confidence 58999999999999999873 122 33444433 445444433 431 1 23344 33443248999999998
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcCH-----------H----------HHHHHHHHHhhCCCeeEEe
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------R----------LIESARALTTRLKWDARVI 644 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------~----------~~~~~~~~~~~~~W~~~~~ 644 (667)
++... +...+|-++-|+|+|||++++.+.. . ..+++.++++..-++....
T Consensus 123 ~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 123 AIYNI-------GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp CGGGT-------CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred Cceec-------CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 88654 3467899999999999999997421 1 2346667777777776543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.5e-06 Score=81.84 Aligned_cols=116 Identities=18% Similarity=0.146 Sum_probs=79.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc----cccccccccCCCCCCCccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF----VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl----ig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
.+|||+|||.|.++.+|.+.+. +|+-+|-. ..+..+-+++. --+..|.. .++.-+.+||+|.+.+++.+
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGY-----KAVGVDISEVMIQKGKERGEGPDLSFIKGDLS-SLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHTTTCBTTEEEEECBTT-BCSSCTTCEEEEEEESCTTS
T ss_pred CeEEEEcCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhcccCCceEEEcchh-cCCCCCCCccEEEEcChHhh
Confidence 3899999999999999998422 44555544 56666666631 11222222 23322489999999988876
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEcCH----------------------HHHHHHHHHHhhCCCeeEEe
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------------RLIESARALTTRLKWDARVI 644 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------------~~~~~~~~~~~~~~W~~~~~ 644 (667)
.. ....+|-|+-|+|+|||++++.+.. ...++++.+++.--+++...
T Consensus 129 ~~------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 129 TE------EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp SS------CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cc------CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 54 2347899999999999999997410 12356788888888886654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.87 E-value=1e-05 Score=82.46 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=63.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cccccccccccCCCCCCCccccccccCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Glig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
.+|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ ++--+..|.. .++ ++.+||+|++..++....
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 59 EFILDLGCGTGQLTEKIAQSGA-----EVLGTDNAATMIEKARQNYPHLHFDVADAR-NFR-VDKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHCTTSCEEECCTT-TCC-CSSCEEEEEEESCGGGCS
T ss_pred CEEEEecCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHhhCCCCEEEECChh-hCC-cCCCcCEEEEcchhhhCc
Confidence 5899999999999999987332 33444433 444444444 2222222332 344 378999999998887653
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEE
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+...+|-|+-|+|||||++++.
T Consensus 132 ------d~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 132 ------EPEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp ------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------CHHHHHHHHHHhcCCCcEEEEE
Confidence 3457899999999999999986
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00017 Score=77.62 Aligned_cols=132 Identities=11% Similarity=0.137 Sum_probs=72.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccccc------cccccccCCCCCCCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVG------VLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGlig------~~~~~c~~f~typ~tyDl~H~ 585 (667)
..|||+|||+|.|+.+|....... .|+-+|.. ..+..+- +.|+-. +..|..+.++ +.+||+|-+
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~---~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--~~~fD~Ii~ 298 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQA---KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--PFRFNAVLC 298 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--TTCEEEEEE
T ss_pred CeEEEEeCcchHHHHHHHHHCCCC---EEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--CCCeeEEEE
Confidence 679999999999999998742111 23333433 2332222 233211 2334444444 279999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcC--HHHHHHHHHHHhhCCCeeEEeeeccCCCccEEEEEcccc
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--ARLIESARALTTRLKWDARVIEIESNSDERLLICQKPFF 662 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~li~~K~~~ 662 (667)
+..|..... -.+-....++-++-|+|+|||.+++..+ ...-..++++-. ..+.... +.++.|.+-.+-
T Consensus 299 nppfh~~~~-~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg--~~~~~a~------~~~F~V~~~~~~ 368 (375)
T 4dcm_A 299 NPPFHQQHA-LTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG--NCTTIAT------NNKFVVLKAVKL 368 (375)
T ss_dssp CCCC--------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--CCEEEEE------CSSEEEEEEECC
T ss_pred CCCcccCcc-cCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC--CEEEEee------CCCEEEEEEcCc
Confidence 888764220 0112223578899999999999998532 223334444333 1222222 356666665543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.7e-06 Score=84.97 Aligned_cols=95 Identities=24% Similarity=0.282 Sum_probs=64.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----ccc---c-cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV---G-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gli---g-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++..|.+. .. .+|+-+|-. ..+..+-++ |+- - +..|..+ +|.-+.+||+|.+..
T Consensus 63 ~~vLDiGcG~G~~~~~l~~~-~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~ 137 (273)
T 3bus_A 63 DRVLDVGCGIGKPAVRLATA-RD---VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD-LPFEDASFDAVWALE 137 (273)
T ss_dssp CEEEEESCTTSHHHHHHHHH-SC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCTTCEEEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHh-cC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc-CCCCCCCccEEEEec
Confidence 48999999999999999863 12 244444544 445444433 432 1 2223322 232137999999999
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+|.+.. + ...+|-|+-|+|+|||.+++.+
T Consensus 138 ~l~~~~---~---~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 138 SLHHMP---D---RGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp CTTTSS---C---HHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhCC---C---HHHHHHHHHHHcCCCeEEEEEE
Confidence 888764 2 3678999999999999999875
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1e-05 Score=82.75 Aligned_cols=138 Identities=12% Similarity=0.178 Sum_probs=88.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++.+|... .+- .+|+-+|-. ..+.++-++ |+ -=+..|+.++++ +.+||+|-++--
T Consensus 111 ~~vLDlG~GsG~~~~~la~~-~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npP 185 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASE-RPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPP 185 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHH-CTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCC
T ss_pred CEEEEecCCccHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCC
Confidence 37999999999999999853 221 145555554 444444332 32 223446666655 478999999754
Q ss_pred cccccC---------CCCC----------CCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeeccC
Q 005959 589 LSLESG---------HRHR----------CSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESN 649 (667)
Q Consensus 589 ~~~~~~---------~~~~----------c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~~ 649 (667)
+..... .... -.+..++-++-|+|+|||++++.......++++++.+...|+......+..
T Consensus 186 y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~~ 265 (276)
T 2b3t_A 186 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYG 265 (276)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTT
T ss_pred CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecCC
Confidence 432210 0000 122467788999999999999986666667778877777776544433455
Q ss_pred CCccEEEEEc
Q 005959 650 SDERLLICQK 659 (667)
Q Consensus 650 ~~~~~li~~K 659 (667)
+.+++++++|
T Consensus 266 g~~r~~~~~~ 275 (276)
T 2b3t_A 266 DNERVTLGRY 275 (276)
T ss_dssp SSEEEEEEEC
T ss_pred CCCcEEEEEE
Confidence 6788888875
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=97.87 E-value=9e-06 Score=80.22 Aligned_cols=93 Identities=16% Similarity=0.216 Sum_probs=63.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc-cc-cccccccCCCCCCCccccccccC-c
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VG-VLHDWCEAFPTYPRTYDLVHAEG-L 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl-ig-~~~~~c~~f~typ~tyDl~H~~~-~ 588 (667)
.+|||+|||.|.++..|.+ . .+|+-+|-. ..+..+-++ |. +- +..|..+ ++ .+.+||+|.+.. +
T Consensus 35 ~~vLdiG~G~G~~~~~l~~--~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~~ 106 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLAD--H----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE-LE-LPEPVDAITILCDS 106 (243)
T ss_dssp CEEEEESCTTCHHHHHHTT--T----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG-CC-CSSCEEEEEECTTG
T ss_pred CeEEEecCCCCHHHHHHhh--C----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh-cC-CCCCcCEEEEeCCc
Confidence 5899999999999999986 3 355555554 445444443 21 11 1223222 22 358999999875 6
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
+.... +.-....+|-++-|+|+|||.+++
T Consensus 107 ~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 107 LNYLQ---TEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp GGGCC---SHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhcC---CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 66653 334556789999999999999998
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.86 E-value=7.6e-06 Score=79.64 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=65.8
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccc---cCCCCCCCccccccccCcccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWC---EAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c---~~f~typ~tyDl~H~~~~~~~ 591 (667)
-.+|||+|||.|.++.+|.+. + .+|+-+|-. ..+..+-++..--+..|.. .+|+ +.+||+|.+..++.+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~--~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~fD~v~~~~~l~~ 105 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIKEN--G---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYE--EEQFDCVIFGDVLEH 105 (230)
T ss_dssp CSEEEEETCTTSHHHHHHHTT--T---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSC--TTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHhc--C---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCC--CCccCEEEECChhhh
Confidence 358999999999999999873 4 345555554 4455555443211222333 3333 289999999998877
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.. +...+|-|+-|+|+|||++++..
T Consensus 106 ~~------~~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 106 LF------DPWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp SS------CHHHHHHHTGGGEEEEEEEEEEE
T ss_pred cC------CHHHHHHHHHHHcCCCCEEEEEe
Confidence 64 23578999999999999999963
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=97.86 E-value=4.6e-06 Score=85.52 Aligned_cols=99 Identities=10% Similarity=0.055 Sum_probs=63.8
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----c--ccccccccccCCCCCCCccccccccCc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G--FVGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----G--lig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
-.+|||+|||.|.++..|.+.-.+- -.|+-+|-. ..+..+-++ | +-=+..|.. .++ ++.+||+||+..+
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~~~~ 98 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPLLPEG--SKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAICHAF 98 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTT--CEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEEESC
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh-hcC-cCCCeeEEEECCh
Confidence 3589999999999999998631110 123333332 333333322 2 111223333 344 3789999999998
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
+.... +...+|-|+-|+|+|||++++.+..
T Consensus 99 l~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 99 LLHMT------TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGGCS------SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCC------CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 87664 3357899999999999999987543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=97.86 E-value=5.3e-06 Score=78.40 Aligned_cols=116 Identities=13% Similarity=0.141 Sum_probs=73.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc-----cccccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-----VGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl-----ig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
.+|||+|||.|.++.+|.+.. -+|+-+|-. ..+..+-++ |+ --+..|+.+.++ +.+||+|.++
T Consensus 54 ~~vLdiG~G~G~~~~~~~~~~-----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~ 126 (194)
T 1dus_A 54 DDILDLGCGYGVIGIALADEV-----KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITN 126 (194)
T ss_dssp CEEEEETCTTSHHHHHHGGGS-----SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred CeEEEeCCCCCHHHHHHHHcC-----CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEEC
Confidence 479999999999999998732 244444443 444444333 32 223445555554 5799999997
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcCH-HHHHHHHHHHhhCCCeeEEe
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVI 644 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~ 644 (667)
..|... .-....++-++-|+|+|||.+++.+.. ....++.+..+..-+++...
T Consensus 127 ~~~~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (194)
T 1dus_A 127 PPIRAG-----KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETV 180 (194)
T ss_dssp CCSTTC-----HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEE
T ss_pred CCcccc-----hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEE
Confidence 766531 123457899999999999999997543 33444555444443444444
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.6e-06 Score=85.17 Aligned_cols=97 Identities=21% Similarity=0.190 Sum_probs=67.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc-----ccccccccccCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG-----lig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.+|||+|||.|.++..|.+. .. .+|+-+|-. ..+..+-++. +--+..|..+ ++.-+.+||+|++..++.
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~-~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~ 131 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEK-YG---AHTHGIDICSNIVNMANERVSGNNKIIFEANDILT-KEFPENNFDLIYSRDAIL 131 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HC---CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-CCCCTTCEEEEEEESCGG
T ss_pred CEEEEECCCCCHHHHHHHHH-cC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-CCCCCCcEEEEeHHHHHH
Confidence 58999999999999999873 12 245555544 5565555553 2122334433 232248999999998887
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.. .-....+|-|+-|+|||||++++.+
T Consensus 132 ~~~----~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 132 ALS----LENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp GSC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcC----hHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 762 1234578999999999999999974
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=3.8e-06 Score=85.89 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=66.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----ccc-------cccccccc-C---CCCCCCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV-------GVLHDWCE-A---FPTYPRTY 580 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gli-------g~~~~~c~-~---f~typ~ty 580 (667)
.+|||+|||.|.++..|.+. .. +|+-+|-. ..+..+-++ +.- -.-.|+.+ + |+ +.+|
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~--~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~f 131 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEE--GF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA--GDGF 131 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHT--TC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC--TTCE
T ss_pred CEEEEecCCCCHHHHHHHHC--CC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccccc--CCCe
Confidence 57999999999999999984 22 66666765 566655443 110 01122221 1 33 3899
Q ss_pred cccccc-CccccccC-CCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 581 DLVHAE-GLLSLESG-HRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 581 Dl~H~~-~~~~~~~~-~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
|+|+|. .+|.+... ....-....+|-|+-|+|+|||++++...
T Consensus 132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999998 67766540 00123356799999999999999999753
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.85 E-value=5.6e-06 Score=80.08 Aligned_cols=127 Identities=9% Similarity=0.060 Sum_probs=76.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--ccc-ccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGV-LHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig~-~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++.+|... .+- .+|+-+|.. ..+..+-+ .|+ +-+ ..|+.+..+ +.+||+|.+..+
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~-~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~i~~~~~ 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIV-RPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS--EPPFDGVISRAF 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHH-CTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC--CSCEEEEECSCS
T ss_pred CeEEEECCCCCHHHHHHHHH-CCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc--cCCcCEEEEecc
Confidence 37999999999999998863 121 134444443 33333332 243 222 233333221 378999998542
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEee---e-ccCCCccEEEEEcc
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIE---I-ESNSDERLLICQKP 660 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~---~-~~~~~~~~li~~K~ 660 (667)
.....++-++-|+|+|||++++......-++++.+.+ .|+..... . +.+....+++++|.
T Consensus 142 ----------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 ----------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp ----------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred ----------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 2234789999999999999999865544556666655 67755421 1 12334666777663
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.2e-05 Score=80.37 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=55.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCH-------HHHHHHHHc----CC--CceEEeecccCC-C-CCC--C
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG-------SQVQLTLER----GL--PAMIGSFASKQL-P-YPS--L 316 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~-------~ml~~A~er----gl--~~~~~~~da~~L-p-fpd--~ 316 (667)
..+|||+|||+|.++..|++.+ ..|+++|.++ .+++.|+++ ++ .+.+..+|+..+ + +++ +
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred cCeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 3789999999999999999875 3589999999 888888653 22 367777887663 3 444 6
Q ss_pred CccEEEeccc
Q 005959 317 SFDMLHCARC 326 (667)
Q Consensus 317 sFDlV~~s~~ 326 (667)
+||+|++...
T Consensus 161 ~fD~V~~dP~ 170 (258)
T 2r6z_A 161 KPDIVYLDPM 170 (258)
T ss_dssp CCSEEEECCC
T ss_pred CccEEEECCC
Confidence 8999999754
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.2e-05 Score=82.83 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=60.1
Q ss_pred eEEEeccccchhhhhh----hhhcCCCeEEEEeecCCCC-CchhhHhcc-----ccccccccc------------ccCCC
Q 005959 517 RNVLDMNAHFGGFNSA----LLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDW------------CEAFP 574 (667)
Q Consensus 517 R~vlDm~~~~g~faa~----l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-----Glig~~~~~------------c~~f~ 574 (667)
..|||+|||.|.++.. |......+ ...++-+|.. .-+..+-+| |+-.+--.| ..+|+
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~-~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCc-eeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 4799999999987653 33211123 2233445544 445444443 332111111 11233
Q ss_pred CCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 575 TYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 575 typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+.+||+|+|..++.++. +....|-||-|+|+|||++++.
T Consensus 133 --~~~fD~V~~~~~l~~~~------d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 133 --LQKWDFIHMIQMLYYVK------DIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp --CCCEEEEEEESCGGGCS------CHHHHHHHHHHTEEEEEEEEEE
T ss_pred --CCceeEEEEeeeeeecC------CHHHHHHHHHHHcCCCcEEEEE
Confidence 38999999999988775 3457899999999999999985
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.7e-05 Score=76.11 Aligned_cols=138 Identities=9% Similarity=-0.009 Sum_probs=83.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---ccc-ccccccCCC-CCCCccccccccC
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGV-LHDWCEAFP-TYPRTYDLVHAEG 587 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig~-~~~~c~~f~-typ~tyDl~H~~~ 587 (667)
+|||+|||.|.++.+|.+.-.+- -+|+-+|-. ..+..+-++ |+ +-+ ..|. +.++ ..+.+||+|.++.
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 25 TVVDATCGNGNDTAFLASLVGEN--GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH-QNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp EEEESCCTTSHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG-GGGGGTCCSCEEEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH-HHHhhhccCCceEEEEcC
Confidence 79999999999999988630011 145555554 445444333 33 222 2232 2233 3348999999876
Q ss_pred ccccccCCCCCC------CcchhheeccccccCCcEEEEEc------CHHHHHHHHHHHhhCC---CeeEEeeeccC--C
Q 005959 588 LLSLESGHRHRC------STLDIFTEIDRILRPEGWVIIRD------TARLIESARALTTRLK---WDARVIEIESN--S 650 (667)
Q Consensus 588 ~~~~~~~~~~~c------~~~~~l~E~dRiLRP~G~~i~~d------~~~~~~~~~~~~~~~~---W~~~~~~~~~~--~ 650 (667)
.+-... +.. ....++-++-|+|+|||++++.. ..+..+.+....+.+. |++...+.-+. .
T Consensus 102 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 178 (197)
T 3eey_A 102 GYLPSG---DHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANC 178 (197)
T ss_dssp SBCTTS---CTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSC
T ss_pred CcccCc---ccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccC
Confidence 551111 111 12358999999999999999874 2234566666776665 87776655444 2
Q ss_pred CccEEEEEccc
Q 005959 651 DERLLICQKPF 661 (667)
Q Consensus 651 ~~~~li~~K~~ 661 (667)
..-++|.+|.+
T Consensus 179 pp~~~~~~~~~ 189 (197)
T 3eey_A 179 PPILVCIEKIS 189 (197)
T ss_dssp CCEEEEEEECC
T ss_pred CCeEEEEEEcc
Confidence 45677777754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=97.82 E-value=5e-06 Score=83.06 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=64.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc------cccccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GFVGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R------Glig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.+|||+|||.|.++..|.+.. .+|+-+|-. ..+..+-++ .+--+..|. +.++.-+.+||+|++..++
T Consensus 41 ~~vLDiG~G~G~~~~~l~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 41 PVFLELGVGTGRIALPLIARG-----YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp CEEEEETCTTSTTHHHHHTTT-----CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCCSCTTCEEEEEEESCG
T ss_pred CEEEEeCCcCCHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCCCCCCCeeEEEECCch
Confidence 589999999999999998732 244445544 455555444 121223333 3344223799999998888
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.... +...+|-|+-|+|+|||++++.
T Consensus 115 ~~~~------~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVP------DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCT------THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC------CHHHHHHHHHHHCCCCcEEEEE
Confidence 7653 3457899999999999999985
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2e-05 Score=82.73 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEee
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSF 306 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~ 306 (667)
....+.+.+.+...++ .+|||+|||+|.++..++++. ....|+++|.++.|++.|+++. .++.+..+
T Consensus 12 pvLl~e~l~~L~~~~g--------~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~ 82 (301)
T 1m6y_A 12 PVMVREVIEFLKPEDE--------KIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKV 82 (301)
T ss_dssp CTTHHHHHHHHCCCTT--------CEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEEC
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEC
Confidence 4455566666654443 799999999999999999873 2457999999999999998753 23445555
Q ss_pred cccCCC
Q 005959 307 ASKQLP 312 (667)
Q Consensus 307 da~~Lp 312 (667)
++..++
T Consensus 83 d~~~l~ 88 (301)
T 1m6y_A 83 SYREAD 88 (301)
T ss_dssp CGGGHH
T ss_pred CHHHHH
Confidence 554443
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.4e-06 Score=81.70 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=66.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccc---cccccccCCCCCCCccccccccCcccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig---~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
+|||+|||.|.++.+|.+.+. +|+-+|-. ..+..+-++|+.. +..|..+.++ +.+||+|.+..++.+..
T Consensus 49 ~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 49 DVLELASGTGYWTRHLSGLAD-----RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTP--DRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp EEEEESCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCC--SSCEEEEEEESCGGGSC
T ss_pred eEEEECCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCC--CCceeEEEEechhhcCC
Confidence 899999999999999987432 44445543 5566666666311 2233333333 48999999999888764
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+ -.+..+|-|+-|+|+|||.+++.+
T Consensus 122 ---~-~~~~~~l~~~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 122 ---D-DRFEAFWESVRSAVAPGGVVEFVD 146 (218)
T ss_dssp ---H-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---H-HHHHHHHHHHHHHcCCCeEEEEEe
Confidence 1 224578999999999999999874
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.4e-06 Score=85.29 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=65.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cc-cccccccCCC-CCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VG-VLHDWCEAFP-TYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig-~~~~~c~~f~-typ~tyDl~H~~ 586 (667)
..|||+|||.|.++..|.+.+. .|+-+|-. ..+..+-++ |+ +- +..|.. .++ ..+.+||+|.|.
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~v~~~ 143 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH-----QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQ-DVASHLETPVDLILFH 143 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGG-GTGGGCSSCEEEEEEE
T ss_pred CEEEEeCCcchHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHH-HhhhhcCCCceEEEEC
Confidence 4799999999999999987422 44444543 445444443 43 11 222333 333 334899999999
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.++.... +...+|-|+-|+|+|||++++.+
T Consensus 144 ~~l~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 144 AVLEWVA------DPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp SCGGGCS------CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred chhhccc------CHHHHHHHHHHHcCCCeEEEEEE
Confidence 9988764 23579999999999999999965
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.3e-05 Score=76.22 Aligned_cols=138 Identities=16% Similarity=0.094 Sum_probs=76.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cccccccccCCCCC-CCcccccccc-C
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTY-PRTYDLVHAE-G 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~c~~f~ty-p~tyDl~H~~-~ 587 (667)
..|||+|||.|.++..|.+.. -.|+-+|-. ..+..+-+ .|+ +-+.++-.+.++.+ +.+||+|.++ +
T Consensus 24 ~~vLDiGcG~G~~~~~la~~~-----~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGLS-----KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTTS-----SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CEEEEEcCCCCHHHHHHHHhC-----CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 379999999999999998732 234444543 44444433 244 33344434443323 4789999765 2
Q ss_pred ccccccCC--CCCCCcchhheeccccccCCcEEEEEcC------HHHHHHHHHHHhhCC---CeeEEeeeccC--CCccE
Q 005959 588 LLSLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLK---WDARVIEIESN--SDERL 654 (667)
Q Consensus 588 ~~~~~~~~--~~~c~~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~---W~~~~~~~~~~--~~~~~ 654 (667)
.+..-... ...-.....|-|+-|+|+|||.+++..- .+..+.+...+..+. |.+.....-+. ....+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 178 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFL 178 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEE
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeE
Confidence 22210000 0001122567899999999999998532 234456666666665 66655543332 12344
Q ss_pred EEEEc
Q 005959 655 LICQK 659 (667)
Q Consensus 655 li~~K 659 (667)
++.+|
T Consensus 179 ~~i~~ 183 (185)
T 3mti_A 179 VMLEK 183 (185)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44444
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.78 E-value=8.9e-06 Score=80.94 Aligned_cols=123 Identities=18% Similarity=0.166 Sum_probs=79.8
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc------cc-cccccccCCCCCCCccccccccC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF------VG-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl------ig-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
-.+|||+|||.|.++.+|++.. . -+|+-+|-. ..+..+-++.- +- +..|. +.++.-+.+||+|.+..
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~-~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPL-F---REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQW 154 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTT-C---SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEES
T ss_pred CCEEEEECCCCCHHHHHHHHhc-C---CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh-hhcCCCCCCEEEEEEcc
Confidence 3589999999999999998631 1 134444443 34444333320 11 12232 23343346899999998
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcCH---------------HHHHHHHHHHhhCCCeeEEeeec
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------RLIESARALTTRLKWDARVIEIE 647 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------------~~~~~~~~~~~~~~W~~~~~~~~ 647 (667)
++.... + -.+..+|-|+-|+|+|||++++.+.. ...++++++++..-++.......
T Consensus 155 ~l~~~~---~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 155 VIGHLT---D-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp CGGGSC---H-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred hhhhCC---H-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 887664 1 12346899999999999999996521 13677888888888887766433
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=97.78 E-value=2.1e-05 Score=76.80 Aligned_cols=100 Identities=11% Similarity=0.061 Sum_probs=63.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--------cccccccccCCCCCCCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--------VGVLHDWCEAFPTYPRTYDLV 583 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--------ig~~~~~c~~f~typ~tyDl~ 583 (667)
.+|||+|||.|.|+.+|.+.. +. .+|+-+|-. ..+..+-++ |+ -=+..|. +..+.-+.+||+|
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~-~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v 106 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDS-FF--EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDAA 106 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCT-TC--SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSEE
T ss_pred CEEEEeCCCCCHHHHHHHhhC-CC--CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCEE
Confidence 589999999999999998732 21 134444443 444444433 22 1111222 1222222689999
Q ss_pred cccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 584 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
.|..++.... .-.+..+|-++-|+|+|||.+++.+..
T Consensus 107 ~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 143 (217)
T 3jwh_A 107 TVIEVIEHLD----LSRLGAFERVLFEFAQPKIVIVTTPNI 143 (217)
T ss_dssp EEESCGGGCC----HHHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred eeHHHHHcCC----HHHHHHHHHHHHHHcCCCEEEEEccCc
Confidence 9999988664 123457889999999999988886543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.78 E-value=6e-05 Score=75.84 Aligned_cols=128 Identities=18% Similarity=0.143 Sum_probs=77.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-cc-----cccccc-cCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-----VLHDWC-EAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig-----~~~~~c-~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|+|+..|++. ..- .|+-+|-. +.|..+..+.- +. -+...+ +.++. .-||.+-++-+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~--g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v 112 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQN--GAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVS 112 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHT--TCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCS
T ss_pred CEEEEEccCCCHHHHHHHhc--CCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEE
Confidence 47999999999999999873 211 44555544 66665554321 11 111111 23332 01344444444
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc-------------------CH---HHHHHHHHHHhhCCCeeEEeee
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-------------------TA---RLIESARALTTRLKWDARVIEI 646 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-------------------~~---~~~~~~~~~~~~~~W~~~~~~~ 646 (667)
|+.. ..+|-|+-|+|+|||++++-- .. ..++++..++++.-|++...+.
T Consensus 113 ~~~l---------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~ 183 (232)
T 3opn_A 113 FISL---------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTF 183 (232)
T ss_dssp SSCG---------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred hhhH---------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEE
Confidence 4333 469999999999999999741 11 2467788888888898776654
Q ss_pred cc-----CCCccEEEEEc
Q 005959 647 ES-----NSDERLLICQK 659 (667)
Q Consensus 647 ~~-----~~~~~~li~~K 659 (667)
.. ++-+-++.++|
T Consensus 184 ~pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 184 SPIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp CSSCBTTTBCCEEEEEEE
T ss_pred ccCCCCCCCHHHHHHHhh
Confidence 32 23455666666
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.76 E-value=7.1e-06 Score=81.83 Aligned_cols=93 Identities=17% Similarity=0.288 Sum_probs=59.5
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cc-cccccccCCC-CCCCccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFP-TYPRTYDLVHA 585 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~c~~f~-typ~tyDl~H~ 585 (667)
-.+|||+|||.|.++.+|.+. .+ .-.|+-+|-. ..+..+-+ .|+ |- +..|..+..+ ..+.+||+|.+
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~-~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASI-SD--DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTT-CT--TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHh-CC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 468999999999999999862 12 1234444443 33333322 343 11 2334444444 44589999987
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
+.-.. ....++-++-|+|||||++|+
T Consensus 149 ~~~~~---------~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 149 DAAKA---------QSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp ETTSS---------SHHHHHHHHGGGEEEEEEEEE
T ss_pred cCcHH---------HHHHHHHHHHHhcCCCeEEEE
Confidence 54322 344688889999999999999
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.76 E-value=1.7e-05 Score=80.04 Aligned_cols=96 Identities=26% Similarity=0.304 Sum_probs=64.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-cccccccccCCCCCCCccccccccCccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 594 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~ 594 (667)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++.. .-+..|. +.++.-+.+||+|-+...+.++.
T Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~~~~~~- 128 (260)
T 2avn_A 56 CRVLDLGGGTGKWSLFLQERGF-----EVVLVDPSKEMLEVAREKGVKNVVEAKA-EDLPFPSGAFEAVLALGDVLSYV- 128 (260)
T ss_dssp CEEEEETCTTCHHHHHHHTTTC-----EEEEEESCHHHHHHHHHHTCSCEEECCT-TSCCSCTTCEEEEEECSSHHHHC-
T ss_pred CeEEEeCCCcCHHHHHHHHcCC-----eEEEEeCCHHHHHHHHhhcCCCEEECcH-HHCCCCCCCEEEEEEcchhhhcc-
Confidence 4799999999999999987322 44555544 55555555542 1111222 22332237999999987665554
Q ss_pred CCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 595 HRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
. +...+|-|+-|+|+|||.+++...
T Consensus 129 --~--~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 129 --E--NKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp --S--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --c--cHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1 266899999999999999998643
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.6e-05 Score=84.89 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=65.4
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhc----cccc----ccccccccCCCCCCCcccccccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~----RGli----g~~~~~c~~f~typ~tyDl~H~~ 586 (667)
..+.|||+|||.|.++.+|.+. .|-. .++-.|-+..+..+-+ .|+- =+-+|..+.-..+|.+||+|.+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~-~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQY-NKEV--EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHH-STTC--EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHh-CCCC--EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 4689999999999999999873 2211 2333333333433333 2431 22334333210246889999999
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.++..|.. . ....+|-++-|.|+|||.++|.|
T Consensus 256 ~vlh~~~~--~--~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFSE--E--EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSCH--H--HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCCH--H--HHHHHHHHHHHhcCCCcEEEEEe
Confidence 99987752 1 23368899999999999999864
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.2e-05 Score=80.85 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=75.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccc---cc-cccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VL-HDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig---~~-~~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|+|+.++...... .|+-+|-. ..+..+-+ .|+-. .+ .|. +.++. +.+||+|.++.
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~----~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~-~~~~~-~~~fD~Vi~~~ 200 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA----KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN-RDFPG-ENIADRILMGY 200 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC----EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT-TTCCC-CSCEEEEEECC
T ss_pred CEEEEecccCCHHHHHHHHhCCC----EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCH-HHhcc-cCCccEEEECC
Confidence 47999999999999999874333 34444543 44443332 24422 22 222 22332 57999998854
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcC-------HHHHHHHHHHHhhCCCeeEEe
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-------ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-------~~~~~~~~~~~~~~~W~~~~~ 644 (667)
.++. ..++-++-|+|+|||++++.+. .+..+++.+.++...|++...
T Consensus 201 p~~~----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 201 VVRT----------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp CSSG----------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred chhH----------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence 4322 3578889999999999999543 356788899999999998874
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.75 E-value=2.3e-05 Score=80.00 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=59.7
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CceEEeecc
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFAS 308 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da 308 (667)
...+.+.+.+.... ..+|||||||+|.+|. +. ++ ....|+++|.++.|++.++++.. ++.+..+|+
T Consensus 8 ~i~~~iv~~~~~~~--------~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~ 76 (252)
T 1qyr_A 8 FVIDSIVSAINPQK--------GQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDA 76 (252)
T ss_dssp HHHHHHHHHHCCCT--------TCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCG
T ss_pred HHHHHHHHhcCCCC--------cCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECch
Confidence 34455666655433 3789999999999999 65 43 22238999999999999987642 467888898
Q ss_pred cCCCCCCC-----CccEEEeccc
Q 005959 309 KQLPYPSL-----SFDMLHCARC 326 (667)
Q Consensus 309 ~~Lpfpd~-----sFDlV~~s~~ 326 (667)
..+++++. ..|.|+++.-
T Consensus 77 ~~~~~~~~~~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 77 MTFNFGELAEKMGQPLRVFGNLP 99 (252)
T ss_dssp GGCCHHHHHHHHTSCEEEEEECC
T ss_pred hhCCHHHhhcccCCceEEEECCC
Confidence 88876532 3467777743
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.75 E-value=9.6e-06 Score=78.64 Aligned_cols=92 Identities=22% Similarity=0.196 Sum_probs=62.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cccccccccccCCCCCCCccccccccCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Glig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
.+|||+|||.|.++..| . .. +|+-+|-. ..+..+-++ ++--+..|. +.++.-+.+||+|.+..++.+..
T Consensus 38 ~~vLdiG~G~G~~~~~l-~--~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL-P--YP----QKVGVEPSEAMLAVGRRRAPEATWVRAWG-EALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp SEEEEETCTTCHHHHHC-C--CS----EEEEECCCHHHHHHHHHHCTTSEEECCCT-TSCCSCSSCEEEEEEESCTTTCS
T ss_pred CeEEEECCCCCHhHHhC-C--CC----eEEEEeCCHHHHHHHHHhCCCcEEEEccc-ccCCCCCCcEEEEEEcChhhhcC
Confidence 48999999999999888 3 20 34444544 445455444 221122222 22332237999999998887653
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
....+|-|+-|+|+|||.+++.+
T Consensus 110 ------~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 110 ------DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp ------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------CHHHHHHHHHHHcCCCCEEEEEe
Confidence 34578999999999999999974
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.3e-05 Score=82.16 Aligned_cols=136 Identities=14% Similarity=0.120 Sum_probs=85.2
Q ss_pred CCCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhc----cccc----ccccccccCCCCCCCccccc
Q 005959 512 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLV 583 (667)
Q Consensus 512 ~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~----RGli----g~~~~~c~~f~typ~tyDl~ 583 (667)
++....+|+|+|||.|.++.+|++....+- ++-.|-+..+..+-+ .|+- =+-+|..+++| ..||+|
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p---~~~D~v 239 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHEDLS---GTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP---AGAGGY 239 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC---CSCSEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCCCCe---EEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCC---CCCcEE
Confidence 345678999999999999999987322221 222233333333322 2431 23345545555 489999
Q ss_pred cccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH----------------------HHHHHHHHHHhhCCCee
Q 005959 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------------RLIESARALTTRLKWDA 641 (667)
Q Consensus 584 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------------~~~~~~~~~~~~~~W~~ 641 (667)
.+..++..+.. -....+|-++=|+|+|||+++|.|.. ...++++++++.--++.
T Consensus 240 ~~~~vlh~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 315 (332)
T 3i53_A 240 VLSAVLHDWDD----LSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAV 315 (332)
T ss_dssp EEESCGGGSCH----HHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEE
T ss_pred EEehhhccCCH----HHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEE
Confidence 99999988762 12346899999999999999996531 11345666666666765
Q ss_pred EEeeeccCCCccEEEEEc
Q 005959 642 RVIEIESNSDERLLICQK 659 (667)
Q Consensus 642 ~~~~~~~~~~~~~li~~K 659 (667)
...... ++ ..++.++|
T Consensus 316 ~~~~~~-~~-~~vie~r~ 331 (332)
T 3i53_A 316 RAAHPI-SY-VSIVEMTA 331 (332)
T ss_dssp EEEEEC-SS-SEEEEEEE
T ss_pred EEEEEC-CC-cEEEEEee
Confidence 544322 22 55666654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=8.8e-06 Score=81.60 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=63.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----c--ccccccc---ccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F--VGVLHDW---CEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----l--ig~~~~~---c~~f~typ~tyDl~H~~ 586 (667)
..|||+|||.|.++.+|.+ ... -+|+-+|-+ ..+..+-++. . .=+..|| ...++. .+||.|..+
T Consensus 62 ~rVLdiG~G~G~~~~~~~~--~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~FD~i~~D 135 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQE--API--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYD 135 (236)
T ss_dssp EEEEEECCTTSHHHHHHTT--SCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEEC
T ss_pred CeEEEECCCccHHHHHHHH--hCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc--cCCceEEEe
Confidence 4699999999999999976 322 245555655 6666655433 1 1122344 445554 789999876
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.+.+.... .+.-....++=|+-|+|||||.|++-
T Consensus 136 ~~~~~~~~-~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 136 TYPLSEET-WHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGG-TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeecccch-hhhcchhhhhhhhhheeCCCCEEEEE
Confidence 66554431 01123446888999999999999974
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.5e-05 Score=78.54 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=63.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----ccccccccccCCCCCCCccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----lig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
.+|||+|||.|.++..|.+.+.. +|+-+|-. ..+..+-++. +--+..|..+ ++.-+.+||+|.+..++..
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 45 LRIVDLGCGFGWFCRWAHEHGAS----YVLGLDLSEKMLARARAAGPDTGITYERADLDK-LHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGG-CCCCTTCEEEEEEESCGGG
T ss_pred CEEEEEcCcCCHHHHHHHHCCCC----eEEEEcCCHHHHHHHHHhcccCCceEEEcChhh-ccCCCCCceEEEEeccccc
Confidence 58999999999999999874220 33334433 4444444443 2112233322 3322479999999988776
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.. ....+|-++-|+|+|||.+++..
T Consensus 120 ~~------~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 120 VE------DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc------hHHHHHHHHHHhcCcCcEEEEEe
Confidence 53 34578999999999999999864
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.72 E-value=1.9e-05 Score=77.00 Aligned_cols=97 Identities=23% Similarity=0.249 Sum_probs=63.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----c--ccccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G--FVGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----G--lig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.+|||+|||.|.++..|.+.. + +|+-+|-. ..+..+-++ | +--+..|..+ ++.-+.+||+|.+..++
T Consensus 40 ~~vLDlG~G~G~~~~~l~~~~-~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 40 GKVLDLACGVGGFSFLLEDYG-F----EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-LSFEDKTFDYVIFIDSI 113 (227)
T ss_dssp CEEEEETCTTSHHHHHHHHTT-C----EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-CCSCTTCEEEEEEESCG
T ss_pred CeEEEEeccCCHHHHHHHHcC-C----EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-CCCCCCcEEEEEEcCch
Confidence 579999999999999998742 2 45555543 444444332 1 2222334333 23223799999998884
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
..+. .-....+|-++-|+|+|||.+++.+.
T Consensus 114 ~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 114 VHFE----PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp GGCC----HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhCC----HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 4432 12345789999999999999999754
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.71 E-value=2e-05 Score=77.88 Aligned_cols=110 Identities=8% Similarity=0.067 Sum_probs=72.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc--ccccccccccCCCCC-CCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTY-PRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG--lig~~~~~c~~f~ty-p~tyDl~H~~~~~~~~ 592 (667)
..|||+|||.|.++.+|.+.+. .|+-+|-. ..+..+-++. +-=+..|+.+.+|.- +.+||+|.+.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA-----RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 4799999999999999987422 45555554 5566665552 222345665655532 4799999985
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEE
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARV 643 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~ 643 (667)
-....+|-|+-|+|||||.++.-......+.+...+..-.++...
T Consensus 119 ------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 119 ------RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp ------SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEEE
T ss_pred ------CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence 123468899999999999999443222334555555555555443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.71 E-value=7.1e-06 Score=80.88 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=62.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-----cccccccccccCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-----Glig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
..|||+|||.|.++.+|.+.... .+|+-+|-. ..+..+-++ .+--+..|.. .++ ++.+||+|.+..++.
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPE---ATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYS-KYD-FEEKYDMVVSALSIH 120 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTT---CEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTT-TCC-CCSCEEEEEEESCGG
T ss_pred CeEEEecCCCCHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHhhccCCCEEEEeCchh-ccC-CCCCceEEEEeCccc
Confidence 68999999999999999874111 134444443 444444443 1211222322 222 238999999998887
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.... -....+|-|+-|+|+|||++++.+
T Consensus 121 ~~~~----~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 121 HLED----EDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GSCH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCH----HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7641 112248899999999999999975
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.71 E-value=3.9e-05 Score=74.26 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=76.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--c-ccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--V-GVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--i-g~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..|.+..... .|+-+|-. ..+..+-++ |+ + -+..|..+.++. ..+||+|-++..
T Consensus 42 ~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~~~~ 117 (204)
T 3e05_A 42 LVMWDIGAGSASVSIEASNLMPNG---RIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD-LPDPDRVFIGGS 117 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTS---EEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT-SCCCSEEEESCC
T ss_pred CEEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc-CCCCCEEEECCC
Confidence 579999999999999998742111 23444443 444444332 33 1 122344344433 257999988665
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc-CHHHHHHHHHHHhhCCCeeEEe
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
+. .+..++-++-|+|+|||.+++.. ..+..+++..+++...|++...
T Consensus 118 ~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 165 (204)
T 3e05_A 118 GG---------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEVA 165 (204)
T ss_dssp TT---------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEEE
T ss_pred Cc---------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeEE
Confidence 53 34478999999999999999984 4467788888888888865544
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.2e-05 Score=82.79 Aligned_cols=94 Identities=10% Similarity=-0.014 Sum_probs=61.1
Q ss_pred eeEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCC-CchhhHhcc-----cccc----cccccccCCCCCC------C
Q 005959 516 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDR-----GFVG----VLHDWCEAFPTYP------R 578 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~~~~R-----Glig----~~~~~c~~f~typ------~ 578 (667)
-.+|||+|||.|.++..|.+.- .. -+|+-+|-. ..+..+-++ |... +..|.. .++.-. .
T Consensus 37 ~~~vLDiGcG~G~~~~~la~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 37 RKLLVDVGCGPGTATLQMAQELKPF---EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD-DFKFLGADSVDKQ 112 (299)
T ss_dssp CSEEEEETCTTTHHHHHHHHHSSCC---SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT-CCGGGCTTTTTSS
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCC---CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH-hCCccccccccCC
Confidence 4689999999999999998410 11 234444443 555555443 2211 122222 222112 6
Q ss_pred ccccccccCccccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 579 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 579 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
+||+|+|..++... ....+|-|+-|+|||||++++
T Consensus 113 ~fD~V~~~~~l~~~-------~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 113 KIDMITAVECAHWF-------DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CEEEEEEESCGGGS-------CHHHHHHHHHHHEEEEEEEEE
T ss_pred CeeEEeHhhHHHHh-------CHHHHHHHHHHhcCCCcEEEE
Confidence 89999998877543 456899999999999999998
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=85.28 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC-----------------------------------------ceeEEEEecCCHHHHH
Q 005959 254 VRTILDIGCGYGSFGAHLFSKEL-----------------------------------------LTMCIANYEASGSQVQ 292 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~-----------------------------------------~~~sV~gvD~S~~ml~ 292 (667)
...|||.+||+|.++..++..+. ....|+|+|+++.|++
T Consensus 191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~ 270 (703)
T 3v97_A 191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ 270 (703)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence 36899999999999887765310 1146999999999998
Q ss_pred HHHHc----CCC--ceEEeecccCC--CCCCCCccEEEecccc-ccccc--CHHH---HHHHHHhcccCCeEEEEEeCCC
Q 005959 293 LTLER----GLP--AMIGSFASKQL--PYPSLSFDMLHCARCG-VDWDQ--KDGI---LLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 293 ~A~er----gl~--~~~~~~da~~L--pfpd~sFDlV~~s~~l-l~~~~--d~~~---~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.|+++ |+. +.+.++|+..+ |..+++||+|+++--. ..+.. +... .|.++.+.+.|||.+++.++..
T Consensus 271 ~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 271 RARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSASP 350 (703)
T ss_dssp HHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCH
T ss_pred HHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeCCH
Confidence 88754 554 56788888877 4444589999998431 11111 2223 3455556666899999887644
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.5e-05 Score=77.94 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=63.2
Q ss_pred eEEEeccccchhhhhhhhhc--CCCeEEEEeecCCCC-CchhhHhccc--ccccccccccCCCCCCCccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEK--GKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~--~~~vwvmnv~p~~~~-~~l~~~~~RG--lig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
.+|||+|||.|.++..|.+. ...| +-+|-. ..+..+-++. +--+..|. +.++ -+.+||+|++..++..
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~~~~v-----~~~D~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~ 107 (259)
T 2p35_A 35 LNGYDLGCGPGNSTELLTDRYGVNVI-----TGIDSDDDMLEKAADRLPNTNFGKADL-ATWK-PAQKADLLYANAVFQW 107 (259)
T ss_dssp SSEEEETCTTTHHHHHHHHHHCTTSE-----EEEESCHHHHHHHHHHSTTSEEEECCT-TTCC-CSSCEEEEEEESCGGG
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEE-----EEEECCHHHHHHHHHhCCCcEEEECCh-hhcC-ccCCcCEEEEeCchhh
Confidence 47999999999999999863 2223 333333 4455554442 11122232 3344 3589999999888876
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.. +...+|-|+-|+|+|||++++..
T Consensus 108 ~~------~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 108 VP------DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp ST------THHHHHHHHGGGEEEEEEEEEEE
T ss_pred CC------CHHHHHHHHHHhcCCCeEEEEEe
Confidence 53 34578999999999999999974
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.6e-05 Score=80.72 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=66.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH---cCCCceEEeecccCCCCCCCCccEEEecccccc-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE---RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD- 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e---rgl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~- 329 (667)
..+|||||||+|.++.+++++. ...++.++|++..+...+.. .+.++.....+++-..++.+.+|+|+|-.+ .+
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmA-pns 168 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIG-ESS 168 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCC-CCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCc-cCC
Confidence 3689999999999999988652 35678899987653221111 011222222222233456789999999865 44
Q ss_pred ---cccCHH--HHHHHHHhcccCC--eEEEEEeCCC
Q 005959 330 ---WDQKDG--ILLLEVDRVLKPG--GYFVWTSPLT 358 (667)
Q Consensus 330 ---~~~d~~--~~L~Ei~RvLKPG--G~Lvis~p~~ 358 (667)
..+... .+|.-+.++|+|| |.|++-.+.+
T Consensus 169 G~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p 204 (282)
T 3gcz_A 169 PSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP 204 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred CChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence 112211 3566678999999 9999988863
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00036 Score=72.95 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=75.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----------CCCceEEeecccC-CCCCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------GLPAMIGSFASKQ-LPYPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----------gl~~~~~~~da~~-Lpfpd~sFDlV 321 (667)
.+++||-||.|.|..++.+++.. ....|+.+|+++.+++.+++- ...+.+..+|+.. +.-..++||+|
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 56899999999999999999873 456799999999999988753 1245566666543 33456789999
Q ss_pred EecccccccccC----HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 322 ~~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.-.. -...+. -..+++.+++.|+|||+++.....
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 97632 111111 136899999999999999986543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=97.69 E-value=3.4e-05 Score=76.11 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=64.0
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-C----chhhHhcc-cccccccccccC--CCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-N----HLPMILDR-GFVGVLHDWCEA--FPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~----~l~~~~~R-Glig~~~~~c~~--f~typ~tyDl~H~~~~~ 589 (667)
+|||+|||.|.++..|.+.-..- .|+-+|-. . .+..+-.+ ++.-+..|-.++ +..++.+||+|.++-
T Consensus 60 ~VLDlGcGtG~~~~~la~~~~~~---~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~-- 134 (210)
T 1nt2_A 60 RVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI-- 134 (210)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC--
T ss_pred EEEEECCcCCHHHHHHHHHcCCC---EEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec--
Confidence 79999999999998887521011 23333333 1 11222222 233333444443 122358999999862
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEc---------CHHHH--HHHHHHHhhCCCeeEEe
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD---------TARLI--ESARALTTRLKWDARVI 644 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d---------~~~~~--~~~~~~~~~~~W~~~~~ 644 (667)
. ..-....++-|+-|+|||||.+++.- +.+.+ ++++.+.+. ++..-.
T Consensus 135 ---~---~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~--f~~~~~ 192 (210)
T 1nt2_A 135 ---A---QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD--FKIVKH 192 (210)
T ss_dssp ---C---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT--SEEEEE
T ss_pred ---c---ChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh--cEEeee
Confidence 1 11112245789999999999999851 11222 355566666 665543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00011 Score=82.96 Aligned_cols=103 Identities=16% Similarity=0.062 Sum_probs=72.7
Q ss_pred CEEEEeCCCCchHHHHHhhcC------C--------ceeEEEEecCCHHHHHHHHHc----CCCceE--EeecccCCC-C
Q 005959 255 RTILDIGCGYGSFGAHLFSKE------L--------LTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLP-Y 313 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g------~--------~~~sV~gvD~S~~ml~~A~er----gl~~~~--~~~da~~Lp-f 313 (667)
.+|||.+||+|.+...+++.- . ....++|+|+++.+++.|+.+ ++...+ .++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 489999999999987765420 0 135799999999999888753 554444 555654443 5
Q ss_pred CCCCccEEEecccccc--ccc--------------------------CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 314 PSLSFDMLHCARCGVD--WDQ--------------------------KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 314 pd~sFDlV~~s~~ll~--~~~--------------------------d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++..||+|+++--... |.. ..-.++..+.+.|+|||++++..|.
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 5679999999743221 110 0125899999999999999998874
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.67 E-value=2.8e-05 Score=77.62 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=79.7
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cccccccccCCCC---CCCccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPT---YPRTYDLVHA 585 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~c~~f~t---yp~tyDl~H~ 585 (667)
-.+|||+|||.|.++..|....... .|+-+|-. ..+.++-+ .|+ |-+++.=.+.++. .+.+||+|.+
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 3589999999999888887321121 34444443 33333322 244 3333322233332 3578999998
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcC---HHHHHHHHHHHhhCCCeeEEeee---ccC-CCccEEEEE
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT---ARLIESARALTTRLKWDARVIEI---ESN-SDERLLICQ 658 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~---~~~~~~~~~~~~~~~W~~~~~~~---~~~-~~~~~li~~ 658 (667)
..+ .....++-++-|+|+|||++++.+. .+.++++.+.++...++...... ... ....+++.+
T Consensus 148 ~~~----------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 217 (240)
T 1xdz_A 148 RAV----------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIR 217 (240)
T ss_dssp ECC----------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred ecc----------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEE
Confidence 552 2345789999999999999998643 45566677777777777644321 111 234566666
Q ss_pred cc
Q 005959 659 KP 660 (667)
Q Consensus 659 K~ 660 (667)
|.
T Consensus 218 k~ 219 (240)
T 1xdz_A 218 KI 219 (240)
T ss_dssp EC
T ss_pred ec
Confidence 65
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=1.1e-05 Score=83.74 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=63.0
Q ss_pred eeEEEeccccchhhhhhhhhc-CCCeEEEEeecCCCC-CchhhHhc----cccc---c-cccccccCCCCCCCccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILD----RGFV---G-VLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~~~~----RGli---g-~~~~~c~~f~typ~tyDl~H~ 585 (667)
-.+|||+|||.|.++..|.+. +. .|+-+|-. ..+..+-+ .|+- - +..|.. .++.=+.+||+|.+
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~ 191 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRFGS-----RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML-DTPFDKGAVTASWN 191 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCCTTCEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-cCCCCCCCEeEEEE
Confidence 357999999999999999873 22 34444443 44444443 3432 1 222332 23321289999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
..++... ....+|-|+-|+|+|||++++.+
T Consensus 192 ~~~l~~~-------~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 192 NESTMYV-------DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp ESCGGGS-------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCchhhC-------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 8887654 26689999999999999999853
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.66 E-value=6e-05 Score=79.71 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=80.4
Q ss_pred CCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchh--hHhccccc----ccccccccCCCCCCCcccccccc
Q 005959 513 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP--MILDRGFV----GVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 513 ~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~--~~~~RGli----g~~~~~c~~f~typ~tyDl~H~~ 586 (667)
+....+|||+|||.|.++.+|++....+- ++-.|-+..+. .+-+.|+- =+-+|..+++ | +||+|.+.
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---p-~~D~v~~~ 254 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQ---GVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREV---P-HADVHVLK 254 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEE---EEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCC---C-CCSEEEEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCE---EEEecCHHHhhcccccccCCCCCeEEEecCCCCCC---C-CCcEEEEe
Confidence 34578999999999999999987322221 22222221110 01112321 2234444444 4 89999999
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcCH-------------------------HHHHHHHHHHhhCCCee
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------------------RLIESARALTTRLKWDA 641 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------------------------~~~~~~~~~~~~~~W~~ 641 (667)
.++..|.. -....+|-|+-|+|||||.++|.|.. ...++++++++.--++.
T Consensus 255 ~vlh~~~d----~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 330 (348)
T 3lst_A 255 RILHNWGD----EDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRL 330 (348)
T ss_dssp SCGGGSCH----HHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEE
T ss_pred hhccCCCH----HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCce
Confidence 99988752 12236899999999999999996521 12355667777767766
Q ss_pred EEeeeccCCCccEEEEE
Q 005959 642 RVIEIESNSDERLLICQ 658 (667)
Q Consensus 642 ~~~~~~~~~~~~~li~~ 658 (667)
..... .++...++.++
T Consensus 331 ~~~~~-~~~~~~vie~~ 346 (348)
T 3lst_A 331 DRVVG-TSSVMSIAVGV 346 (348)
T ss_dssp EEEEE-CSSSCEEEEEE
T ss_pred EEEEE-CCCCcEEEEEE
Confidence 55433 23334444444
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.65 E-value=1.6e-05 Score=78.09 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=77.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCCCCccccccccCccccccCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
.+|||+|||.|.++..|.. . +-+|.. ..+..+-++++--+..|. +.++.-+.+||+|.+..++....
T Consensus 49 ~~vLDiG~G~G~~~~~l~~--~-------~~vD~s~~~~~~a~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~-- 116 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKI--K-------IGVEPSERMAEIARKRGVFVLKGTA-ENLPLKDESFDFALMVTTICFVD-- 116 (219)
T ss_dssp SCEEEETCTTSTTHHHHTC--C-------EEEESCHHHHHHHHHTTCEEEECBT-TBCCSCTTCEEEEEEESCGGGSS--
T ss_pred CcEEEeCCCCCHHHHHHHH--H-------hccCCCHHHHHHHHhcCCEEEEccc-ccCCCCCCCeeEEEEcchHhhcc--
Confidence 4799999999999999975 3 233333 555566666542222232 22332237999999998887653
Q ss_pred CCCCCcchhheeccccccCCcEEEEEcCH------------------------HHHHHHHHHHhhCCCeeEEee
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIRDTA------------------------RLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------------------~~~~~~~~~~~~~~W~~~~~~ 645 (667)
....+|-++-|+|+|||++++.+.. -..++++++++..-++.....
T Consensus 117 ----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 117 ----DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp ----CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred ----CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 2357899999999999999996321 134677788888888765543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=97.65 E-value=1.5e-05 Score=85.79 Aligned_cols=116 Identities=22% Similarity=0.203 Sum_probs=77.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc---------c-c----cc-ccccccc-------CC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---------G-F----VG-VLHDWCE-------AF 573 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R---------G-l----ig-~~~~~c~-------~f 573 (667)
..|||+|||.|.++..|.+.-.+- -.|+-+|-. ..+..+-++ | + +- +..|..+ +|
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEH--GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTT--CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 479999999999998887621011 134444544 556555554 4 1 11 2233333 34
Q ss_pred CCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH-----------------------HHHHHH
Q 005959 574 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------------------RLIESA 630 (667)
Q Consensus 574 ~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------------------~~~~~~ 630 (667)
+ +.+||+|++..++.... + ...+|-|+-|+|||||++++.+-. -..+++
T Consensus 163 ~--~~~fD~V~~~~~l~~~~---d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (383)
T 4fsd_A 163 P--DSSVDIVISNCVCNLST---N---KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDF 234 (383)
T ss_dssp C--TTCEEEEEEESCGGGCS---C---HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHH
T ss_pred C--CCCEEEEEEccchhcCC---C---HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHH
Confidence 3 37999999999888764 2 457999999999999999997411 113677
Q ss_pred HHHHhhCCCeeE
Q 005959 631 RALTTRLKWDAR 642 (667)
Q Consensus 631 ~~~~~~~~W~~~ 642 (667)
.+++..--++..
T Consensus 235 ~~ll~~aGF~~v 246 (383)
T 4fsd_A 235 RRLVAEAGFRDV 246 (383)
T ss_dssp HHHHHHTTCCCE
T ss_pred HHHHHHCCCceE
Confidence 888888778644
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.4e-05 Score=79.53 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=60.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc------c---cccccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG------F---VGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG------l---ig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
..|||+|||.|.++..|.+ ... -+|+-+|-. ..+..+-++. + .|-..+.-.+|+. .+||+|.++
T Consensus 62 ~~vLDiGcGtG~~~~~l~~--~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~V~~d 135 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQE--API--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYD 135 (236)
T ss_dssp EEEEEECCTTSHHHHHHHT--SCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEEC
T ss_pred CeEEEEeccCCHHHHHHHh--cCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCC--CceEEEEEC
Confidence 4799999999999999975 222 145556655 5555554432 1 1222222224543 899999983
Q ss_pred -CccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 587 -GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 587 -~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
..+ .... .+.-....++-|+-|+|||||.+++-+
T Consensus 136 ~~~~-~~~~-~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 136 TYPL-SEET-WHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCC-BGGG-TTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred Cccc-chhh-hhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 222 1110 011122356899999999999999864
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.65 E-value=3.9e-05 Score=77.38 Aligned_cols=134 Identities=9% Similarity=0.084 Sum_probs=77.8
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----ccc----ccccccccCCCCCCC--cccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV----GVLHDWCEAFPTYPR--TYDLVH 584 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gli----g~~~~~c~~f~typ~--tyDl~H 584 (667)
-++|||+|||.|.++.+|.+.-.+- -.|+-+|-. ..+..+-++ |+- =+..|..+.++..+. +||+|.
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPAD--GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTT--CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 4689999999999999998731000 123344433 444444333 442 123344443444433 899999
Q ss_pred ccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH------------HHHHHHHH----HHhhCCCeeEEee-ec
Q 005959 585 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARA----LTTRLKWDARVIE-IE 647 (667)
Q Consensus 585 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~-~~ 647 (667)
++.-... ...++-++-|+|||||++|+.+.. .....+++ +...-+|+..... ..
T Consensus 142 ~d~~~~~---------~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g 212 (248)
T 3tfw_A 142 IDADKPN---------NPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVG 212 (248)
T ss_dssp ECSCGGG---------HHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECS
T ss_pred ECCchHH---------HHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCC
Confidence 8653222 235788888999999999985431 22233333 3444567665542 11
Q ss_pred cCCCccEEEEEcc
Q 005959 648 SNSDERLLICQKP 660 (667)
Q Consensus 648 ~~~~~~~li~~K~ 660 (667)
....+++.|++|.
T Consensus 213 ~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 213 TKGWDGFTLAWVN 225 (248)
T ss_dssp TTCSEEEEEEEEC
T ss_pred CCCCCeeEEEEEe
Confidence 1224788888874
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=1.6e-05 Score=78.01 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=75.3
Q ss_pred eeEEEeccccchhhhhhhhhcCCC-eEEEEeecCCCC-CchhhHhc----ccccc----cccccccCCCCCC----Cccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYP----RTYD 581 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~-vwvmnv~p~~~~-~~l~~~~~----RGlig----~~~~~c~~f~typ----~tyD 581 (667)
-.+|||+|||.|.++.+|.+. .+ - ..|+-+|-. ..+..+-+ .|+-. +..|..+.++..+ .+||
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~-~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARG-LSSG--GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTT-CCSS--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred CCEEEEecCCccHHHHHHHHh-CCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 358999999999999999873 11 1 134444433 33433322 24421 1223333333222 5699
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH------------HHHHHHHH----HHhhCCCeeEEee
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARA----LTTRLKWDARVIE 645 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~ 645 (667)
+|.++.....+ ..++-++-|+|||||++++.+.. .....+++ +...=+|++....
T Consensus 136 ~v~~d~~~~~~---------~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p 206 (223)
T 3duw_A 136 FIFIDADKQNN---------PAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQ 206 (223)
T ss_dssp EEEECSCGGGH---------HHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred EEEEcCCcHHH---------HHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 99986554333 36788889999999999985321 12233333 3334456666554
Q ss_pred e-ccCCCccEEEEEc
Q 005959 646 I-ESNSDERLLICQK 659 (667)
Q Consensus 646 ~-~~~~~~~~li~~K 659 (667)
. ...+.+++.|+.|
T Consensus 207 ~~~~~~~dG~~~~~~ 221 (223)
T 3duw_A 207 TVGSKGYDGFIMAVV 221 (223)
T ss_dssp EEETTEEEEEEEEEE
T ss_pred ccCCCCCCeeEEEEE
Confidence 3 1222467777765
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.64 E-value=3.3e-05 Score=74.22 Aligned_cols=132 Identities=12% Similarity=0.197 Sum_probs=69.8
Q ss_pred eEEEeccccchhhhhhhhhcC----CCeEEEEeecCCCCCchhhHhcccccccccccccC--------------------
Q 005959 517 RNVLDMNAHFGGFNSALLEKG----KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEA-------------------- 572 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~----~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~-------------------- 572 (667)
.+|||+|||.|+++.+|.+.- ..|..+-+.|..... ++.-+-.|..+.
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~--------~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~ 95 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIP--------NVYFIQGEIGKDNMNNIKNINYIDNMNNNSVD 95 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCT--------TCEEEECCTTTTSSCCC-----------CHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCC--------CceEEEccccchhhhhhccccccccccchhhH
Confidence 579999999999999998631 234544444421111 111111222221
Q ss_pred ------CCCCCCccccccccCccccccC--CCCC---CCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCe
Q 005959 573 ------FPTYPRTYDLVHAEGLLSLESG--HRHR---CSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWD 640 (667)
Q Consensus 573 ------f~typ~tyDl~H~~~~~~~~~~--~~~~---c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~ 640 (667)
|+ +.+||+|.++..+..... .... -....+|-++-|+|+|||.+++..- .+...++....... |.
T Consensus 96 ~~~~~~~~--~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~ 172 (201)
T 2plw_A 96 YKLKEILQ--DKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQ 172 (201)
T ss_dssp HHHHHHHT--TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EE
T ss_pred HHHHhhcC--CCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-Hh
Confidence 22 268999999765432100 0000 0011367889999999999998521 12233344444443 43
Q ss_pred -eEEeeecc---CCCccEEEEEc
Q 005959 641 -ARVIEIES---NSDERLLICQK 659 (667)
Q Consensus 641 -~~~~~~~~---~~~~~~li~~K 659 (667)
+....... .+.|..+||++
T Consensus 173 ~v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 173 LVHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp EEEECCCC-----CCEEEEEEEE
T ss_pred eEEEECCcccCCcCceEEEEEec
Confidence 33332222 23578888876
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=6.5e-05 Score=69.33 Aligned_cols=129 Identities=11% Similarity=0.147 Sum_probs=72.4
Q ss_pred eEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhcccccccccccccC---------CCCCCCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEA---------FPTYPRTYDLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~---------f~typ~tyDl~H 584 (667)
.+|||+|||.|.++.+|.+. +..|..+-+.| ...+ ..+--+..|..+. ++ +.+||+|.
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~--~~~~D~i~ 93 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDPI-----VGVDFLQGDFRDELVMKALLERVG--DSKVQVVM 93 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCCC-----TTEEEEESCTTSHHHHHHHHHHHT--TCCEEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---cccc-----CcEEEEEcccccchhhhhhhccCC--CCceeEEE
Confidence 38999999999999999874 12344444433 1111 1111122233222 33 27899999
Q ss_pred ccCccccccCCCCC--CC------cchhheeccccccCCcEEEEEcCH-HHHHHHHHHHhhCCCeeEEeeeccC----CC
Q 005959 585 AEGLLSLESGHRHR--CS------TLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVIEIESN----SD 651 (667)
Q Consensus 585 ~~~~~~~~~~~~~~--c~------~~~~l~E~dRiLRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~~~~~----~~ 651 (667)
++..+.... .. -. ...+|-++-|+|+|||.+++.... .....+...... .|+......... +.
T Consensus 94 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 169 (180)
T 1ej0_A 94 SDMAPNMSG---TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSR 169 (180)
T ss_dssp ECCCCCCCS---CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCC
T ss_pred ECCCccccC---CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCc
Confidence 987765332 10 00 146888999999999999996321 223333333333 366444322221 24
Q ss_pred ccEEEEEc
Q 005959 652 ERLLICQK 659 (667)
Q Consensus 652 ~~~li~~K 659 (667)
+..+|+++
T Consensus 170 ~~~~~~~~ 177 (180)
T 1ej0_A 170 EVYIVATG 177 (180)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEcc
Confidence 66777765
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.63 E-value=5e-05 Score=87.48 Aligned_cols=99 Identities=19% Similarity=0.120 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCchHHHHHhhc----C--------CceeEEEEecCCHHHHHHHHH---cC--CCceEEeecccCCCCC--
Q 005959 254 VRTILDIGCGYGSFGAHLFSK----E--------LLTMCIANYEASGSQVQLTLE---RG--LPAMIGSFASKQLPYP-- 314 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~----g--------~~~~sV~gvD~S~~ml~~A~e---rg--l~~~~~~~da~~Lpfp-- 314 (667)
...|||||||+|.+....+.. + .....|+++|.++..+...+. .+ -.+.++.++++.+..|
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 357999999999996432211 1 124589999999866543332 23 2467888899888774
Q ss_pred ---CCCccEEEecccccccc-cCHHHHHHHHHhcccCCeEEE
Q 005959 315 ---SLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 315 ---d~sFDlV~~s~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
.+..|+|+|.....-.. +-....|..+.|.|||||.++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 57899999985422111 222468888899999999876
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.60 E-value=6.5e-05 Score=73.47 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=75.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cc-cccccccCCCC-C-CCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPT-Y-PRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig-~~~~~c~~f~t-y-p~tyDl~H~~ 586 (667)
..|||+|||.|.|+.+|... .|- .+|+-+|-. ..+..+.+ .|+ +- +..|..+ ++. + +.+||+|.++
T Consensus 43 ~~vLDiGcG~G~~~~~la~~-~p~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQ-NPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHH-CTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEE
T ss_pred CeEEEEccCcCHHHHHHHHH-CCC--CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEE
Confidence 46999999999999998863 211 245555544 44444433 233 11 2233333 331 2 3789999986
Q ss_pred CccccccC---CCCCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhCCCeeEEe
Q 005959 587 GLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 587 ~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
... .|.. ...+-....+|-++-|+|+|||.+++. |..+..+.+.++.....|+....
T Consensus 119 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 119 FSD-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp SCC-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCC-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeec
Confidence 432 1210 001112346899999999999999997 45566777777777767776554
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=97.59 E-value=3.1e-05 Score=74.49 Aligned_cols=113 Identities=11% Similarity=0.116 Sum_probs=72.0
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc-cccc-cccccCCCCCCCccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVL-HDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl-ig~~-~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
+|||+|||.|.++.+|.+. .. +|+-+|-. ..+..+-++ |+ +-++ .|. +.++.-+.+||+|.+. +.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~--~~ 103 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL-ADFDIVADAWEGIVSI--FC 103 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT-TTBSCCTTTCSEEEEE--CC
T ss_pred CEEEECCCCCHhHHHHHhC--CC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh-hhcCCCcCCccEEEEE--hh
Confidence 8999999999999999873 22 56666654 455554444 32 1111 222 2233223799999984 32
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcC-----------------HHHHHHHHHHHhhCCCeeEEe
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----------------ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-----------------~~~~~~~~~~~~~~~W~~~~~ 644 (667)
++ ..-....+|-++-|+|+|||++++.+. .-..++++++++ .|++...
T Consensus 104 ~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 104 HL----PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp CC----CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred cC----CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 22 112355789999999999999999631 122467777777 6776654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=9.1e-06 Score=83.73 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=61.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----c------ccccccccccCCCCCCCcccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G------FVGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----G------lig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
.|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++ | +-=+..|.. .++. +.+||+|.|+
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~v~~~ 157 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW-----EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS-AFAL-DKRFGTVVIS 157 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC-----CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT-BCCC-SCCEEEEEEC
T ss_pred cEEEEeccCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh-cCCc-CCCcCEEEEC
Confidence 799999999999999997432 34444543 445444433 2 111223333 2443 7899999875
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
...-.+. ..-....+|-|+-|+|||||.+++..
T Consensus 158 ~~~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 158 SGSINEL---DEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HHHHTTS---CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccccC---CHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 3322222 22335678999999999999999963
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=1.6e-05 Score=81.48 Aligned_cols=99 Identities=9% Similarity=0.085 Sum_probs=60.2
Q ss_pred EEEeccccchhhhhhhhhcC-CCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCC-CccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYP-RTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ-~tyDl~H~~~~~~ 590 (667)
+|||+|||.|.++.+|.+.- .+= .+|+-+|-. .-|..+-+| |+..-+.-.|.-+..+| ..||+|-+..++.
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~--~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSS--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCC--CEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 69999999999998887521 010 134444543 445444332 43222211222222223 4699999987766
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
... .-....+|-||-|+|+|||.+|+.|
T Consensus 151 ~~~----~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 151 FLE----PSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp GSC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecC----chhHhHHHHHHHHHcCCCcEEEEEe
Confidence 543 1122358899999999999999975
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=5.9e-05 Score=80.04 Aligned_cols=136 Identities=19% Similarity=0.169 Sum_probs=84.1
Q ss_pred CceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhc----ccc----cccccccccCCCCCCCccccccc
Q 005959 514 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGF----VGVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 514 ~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~----RGl----ig~~~~~c~~f~typ~tyDl~H~ 585 (667)
..-.+|||+|||.|.++.+|.+....+ .++-.|-+..+..+-+ .|+ -=+-+|..+++ |..||+|.+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v~~ 254 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPL---PVTADVVLL 254 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SCCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---EEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---CCCCCEEEE
Confidence 345789999999999999998742122 2222232223332222 233 22334554544 445999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcC--H--H-----------------------HHHHHHHHHhhCC
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--A--R-----------------------LIESARALTTRLK 638 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--~--~-----------------------~~~~~~~~~~~~~ 638 (667)
..++..+.. . ....+|-++-|+|+|||+++|.|. . + ..++++++++.--
T Consensus 255 ~~vl~~~~~--~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 330 (374)
T 1qzz_A 255 SFVLLNWSD--E--DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAG 330 (374)
T ss_dssp ESCGGGSCH--H--HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTT
T ss_pred eccccCCCH--H--HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCC
Confidence 999887752 1 123689999999999999998765 2 1 2345666777777
Q ss_pred CeeEEeeeccCCCc-----cEEEEEcc
Q 005959 639 WDARVIEIESNSDE-----RLLICQKP 660 (667)
Q Consensus 639 W~~~~~~~~~~~~~-----~~li~~K~ 660 (667)
++......- ++.. .++.++|+
T Consensus 331 f~~~~~~~~-~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 331 LALASERTS-GSTTLPFDFSILEFTAV 356 (374)
T ss_dssp EEEEEEEEE-CCSSCSSCEEEEEEEEC
T ss_pred CceEEEEEC-CCCcccCCcEEEEEEEC
Confidence 775544322 2233 67888775
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.55 E-value=6.5e-05 Score=70.25 Aligned_cols=110 Identities=8% Similarity=0.058 Sum_probs=76.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ |+ --+..|+.++++. .+||+|.++.+
T Consensus 37 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~~~~ 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAKRCK-----FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEFNKAFIGGT 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHTTSS-----EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCCSEEEECSC
T ss_pred CEEEEeCCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCCcEEEECCc
Confidence 4899999999999999986222 33444433 334333332 32 2233455555554 68999999776
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc-CHHHHHHHHHHHhhCCCeeEEee
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
..+..++-++-|+ |||.+++.+ ..+...++.+.++...|++...+
T Consensus 110 ----------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 110 ----------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp ----------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ----------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEEE
Confidence 2344788888888 999999986 66778888888888889887764
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00046 Score=77.94 Aligned_cols=123 Identities=20% Similarity=0.148 Sum_probs=82.7
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcC--CceeEEEEecCCHHHHHHHHH----cCC---Cc
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLE----RGL---PA 301 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g--~~~~sV~gvD~S~~ml~~A~e----rgl---~~ 301 (667)
....+.+.+++..... +....+|||.+||+|.+...+++.- .....++|+|+++.+++.|+. +|+ ..
T Consensus 203 ~~Vv~lmv~ll~~~~~----~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~ 278 (542)
T 3lkd_A 203 QPVAKLMTQIAFLGRE----DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQ 278 (542)
T ss_dssp HHHHHHHHHHHHTTCT----TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHHhcccC----CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCcc
Confidence 3344555555542110 1245799999999999987776651 124679999999999988875 355 23
Q ss_pred eEEeecccCC--C-CCCCCccEEEecccc-cccc------c--------------C-HHHHHHHHHhccc-CCeEEEEEe
Q 005959 302 MIGSFASKQL--P-YPSLSFDMLHCARCG-VDWD------Q--------------K-DGILLLEVDRVLK-PGGYFVWTS 355 (667)
Q Consensus 302 ~~~~~da~~L--p-fpd~sFDlV~~s~~l-l~~~------~--------------d-~~~~L~Ei~RvLK-PGG~Lvis~ 355 (667)
.+.++|+... | ++...||+|+++--. ..|. . + .-.++..+.+.|+ |||++++..
T Consensus 279 ~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 279 FLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp EEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred ceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 5677776655 4 456789999997321 1110 0 0 1248999999999 999999988
Q ss_pred CC
Q 005959 356 PL 357 (667)
Q Consensus 356 p~ 357 (667)
|.
T Consensus 359 P~ 360 (542)
T 3lkd_A 359 PH 360 (542)
T ss_dssp ET
T ss_pred cc
Confidence 74
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2e-05 Score=81.81 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=63.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc--------------cccccccccc-----CCCC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--------------FVGVLHDWCE-----AFPT 575 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG--------------lig~~~~~c~-----~f~t 575 (667)
-.+|||+|||.|.++..|.+ .+. -+|+-+|-. ..+..+-+|- +--+..|..+ +|+.
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~--~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKK--GRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHH--TTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCEEEEECCCCcHHHHHHHh--cCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 35799999999999999986 222 144555544 4444444331 1112222221 2332
Q ss_pred CCCccccccccCccccc-cCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 576 YPRTYDLVHAEGLLSLE-SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 576 yp~tyDl~H~~~~~~~~-~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
-+.+||+|.+..++... . +.-....+|-|+-|+|+|||++++...
T Consensus 111 ~~~~fD~V~~~~~l~~~~~---~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFE---SYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TTCCEEEEEEETCGGGGGG---SHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCEEEEEEecchhhccC---CHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 23589999998877543 2 223345789999999999999999743
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=2.1e-05 Score=80.07 Aligned_cols=100 Identities=18% Similarity=0.067 Sum_probs=63.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cccc-cccccCCCC-CCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFPT-YPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig~~-~~~c~~f~t-yp~tyDl~H~~ 586 (667)
.+|||+|||.|.++..|...+. -+|+-+|-. ..+..+-++ |+ +-+. .|..+ ++. -+.+||+|.+.
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGI----GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG-RHMDLGKEFDVISSQ 140 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC----SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT-SCCCCSSCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc-cccCCCCCcCEEEEC
Confidence 4799999999999999876321 134444443 444433333 32 2222 23222 222 25799999998
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.++..... +.-....+|-|+-|+|+|||++++...
T Consensus 141 ~~l~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 141 FSFHYAFS--TSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp SCGGGGGS--SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred chhhhhcC--CHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 88754110 223455789999999999999998753
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=97.52 E-value=3.3e-05 Score=79.12 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=55.0
Q ss_pred CccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC----------------HHHHHHHHHHHhhCCCee
Q 005959 578 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT----------------ARLIESARALTTRLKWDA 641 (667)
Q Consensus 578 ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----------------~~~~~~~~~~~~~~~W~~ 641 (667)
.+||+|-+..+|..... +--....+|-|+-|+|||||++++.+. .-..+++++++..--++.
T Consensus 173 ~~fD~V~~~~~l~~~~~--~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 250 (289)
T 2g72_A 173 LPADALVSAFCLEAVSP--DLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV 250 (289)
T ss_dssp SSEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCEEEehhhhhhhcC--CHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeE
Confidence 67999999998876431 112456799999999999999998521 113567777777777765
Q ss_pred EEeeecc----------CCCccEEEEEcccccc
Q 005959 642 RVIEIES----------NSDERLLICQKPFFKR 664 (667)
Q Consensus 642 ~~~~~~~----------~~~~~~li~~K~~~~~ 664 (667)
....... ..+.-+.|++|+=|..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (289)
T 2g72_A 251 RDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGLE 283 (289)
T ss_dssp EEEEEEECCGGGCCTTBCCCEEEEEEEEECC--
T ss_pred EEeeEeeccccccccccCcceEEEEEEeccccc
Confidence 5443221 1123456677766553
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=97.52 E-value=2e-05 Score=76.84 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=57.1
Q ss_pred eEEEeccccchhhhhhhhhcCC-CeEEEEeecCCCC-CchhhHhc----cccc---cc-ccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD----RGFV---GV-LHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~-~vwvmnv~p~~~~-~~l~~~~~----RGli---g~-~~~~c~~f~typ~tyDl~H~~ 586 (667)
++|||+|||.|.++.+|.+.-. .. .|+-+|-. ..+..+-+ .|+- -+ ..|..+.++..+. ||+|.++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 5899999999999999986311 11 23333332 33333222 2431 12 2234443455557 9999875
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.- ......++-++-|+|+|||.+++.+
T Consensus 134 ~~---------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD---------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT---------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CC---------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 22 2334578888999999999999854
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00013 Score=71.82 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=73.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cc-cccccccCCCC-C-CCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPT-Y-PRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig-~~~~~c~~f~t-y-p~tyDl~H~~ 586 (667)
..|||+|||.|.|+.+|... .|- .+|+-+|-. ..+..+.+ .|+ +- +..|..+ ++. + +.+||.|++.
T Consensus 40 ~~vLDiGcG~G~~~~~la~~-~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQ-NPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHH-CTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE
T ss_pred ceEEEEecCCCHHHHHHHHH-CCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE
Confidence 36999999999999999863 121 245555554 44444433 354 11 2233332 221 2 3789998763
Q ss_pred CccccccC---CCCCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhCCCeeEE
Q 005959 587 GLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARV 643 (667)
Q Consensus 587 ~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~ 643 (667)
.. ..|.. ...|-....+|-|+-|+|+|||.+++. |.....+.+.++.....|+...
T Consensus 116 ~~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~ 175 (213)
T 2fca_A 116 FS-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTY 175 (213)
T ss_dssp SC-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred CC-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 22 11210 002222457899999999999999986 5666666766666665665443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00078 Score=72.47 Aligned_cols=92 Identities=11% Similarity=0.057 Sum_probs=63.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
++++|||+||.+|.+|..+++++ ..|+++|..+ |-.... ....+.+...|+.....+.+.||+|+|-.+ .
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~-l~~~l~-~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~-----~ 280 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGP-MAQSLM-DTGQVTWLREDGFKFRPTRSNISWMVCDMV-----E 280 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSC-CCHHHH-TTTCEEEECSCTTTCCCCSSCEEEEEECCS-----S
T ss_pred CCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhh-cChhhc-cCCCeEEEeCccccccCCCCCcCEEEEcCC-----C
Confidence 46899999999999999999996 4589999763 222222 223567778888887777788999999754 3
Q ss_pred CHHHHHHHHHhcccCC---eEEEEE
Q 005959 333 KDGILLLEVDRVLKPG---GYFVWT 354 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPG---G~Lvis 354 (667)
++...+.-+.+.|..| +.++..
T Consensus 281 ~p~~~~~l~~~wl~~~~~~~aI~~l 305 (375)
T 4auk_A 281 KPAKVAALMAQWLVNGWCRETIFNL 305 (375)
T ss_dssp CHHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred ChHHhHHHHHHHHhccccceEEEEE
Confidence 3445555555555444 544433
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.51 E-value=2.9e-05 Score=74.90 Aligned_cols=97 Identities=18% Similarity=0.150 Sum_probs=59.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc-cc-cccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl-ig-~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.+|||+|||.|.+++.++.. ... +|+-+|.. ..+..+-++ |. +- +..|.. .++.-+.+||+|.+..++
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~-~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVE-DGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIR-KLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHH-TTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTT-SCCSCTTCEEEEEECSCG
T ss_pred CEEEEECCCCCHHHHHHHHh-CCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchh-hCCCCCCceeEEEEcChH
Confidence 58999999999985444321 222 44445544 344433332 21 11 122322 233223799999998877
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.++. .-....+|-|+-|+|+|||++++.+
T Consensus 100 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 100 FHMR----KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GGSC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhCC----HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 6552 1235578999999999999999864
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.50 E-value=6.1e-05 Score=82.25 Aligned_cols=68 Identities=16% Similarity=0.039 Sum_probs=54.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------CC-CceEEeecccCC-CC-CCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GL-PAMIGSFASKQL-PY-PSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er------gl-~~~~~~~da~~L-pf-pd~sFDlV~~s 324 (667)
+.+|||+|||+|..+..|++.+ ..|+++|.++.|++.|+++ ++ ++.+.++|+... +. ++++||+|++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4799999999999999999874 4699999999999988754 44 466788887663 32 34689999996
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.4e-05 Score=77.02 Aligned_cols=137 Identities=11% Similarity=0.141 Sum_probs=75.7
Q ss_pred eeEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhccccc---cc-ccccccCCCCC-----CCccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFV---GV-LHDWCEAFPTY-----PRTYDLV 583 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~RGli---g~-~~~~c~~f~ty-----p~tyDl~ 583 (667)
-++|||+|||.|.++.+|.+. +..|..+-+-|.-....-..+-..|+- -+ ..|-.+.++.. +.+||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 468999999999999998862 223444444333222111222233442 11 12333333333 4789999
Q ss_pred cccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH------------HHHHHHHHHHhhC----CCeeEEeeec
Q 005959 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARALTTRL----KWDARVIEIE 647 (667)
Q Consensus 584 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------~~~~~~~~~~~~~----~W~~~~~~~~ 647 (667)
.++.....+ ..++-++-|+|||||++++.|.. ...+.++++.+.+ ++++.+...
T Consensus 141 ~~d~~~~~~---------~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~- 210 (242)
T 3r3h_A 141 FIDADKTNY---------LNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAI- 210 (242)
T ss_dssp EEESCGGGH---------HHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESS-
T ss_pred EEcCChHHh---------HHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEc-
Confidence 886543333 25677888999999999985321 2223444444433 455544421
Q ss_pred cCCCccEEEEEccccccc
Q 005959 648 SNSDERLLICQKPFFKRQ 665 (667)
Q Consensus 648 ~~~~~~~li~~K~~~~~~ 665 (667)
.++++|++|.-=+||
T Consensus 211 ---~dG~~~~~k~~~~~~ 225 (242)
T 3r3h_A 211 ---ADGMFLVQPIAENLY 225 (242)
T ss_dssp ---SSCEEEEEEC-----
T ss_pred ---cCceEEEEEcCCCcc
Confidence 467888888655554
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=97.49 E-value=3.3e-05 Score=80.72 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=62.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc------------cccccccc--c----CC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF------------VGVLHDWC--E----AF 573 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl------------ig~~~~~c--~----~f 573 (667)
..|||+|||.|+....++. .... +|+=+|-. .-|..+-+| |+ ++..+.-+ + +|
T Consensus 50 ~~VLDlGCG~G~~l~~~~~--~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFY--GEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CEEEETTCTTTTTHHHHHH--TTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CeEEEEecCCcHhHHHHHh--cCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 4799999999998777665 2222 45666655 556555554 21 11111111 2 23
Q ss_pred CCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 574 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 574 ~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
+ +.+||+|-|..++...- +.-....+|-||-|+|||||+||+...
T Consensus 126 ~--~~~FD~V~~~~~lhy~~---~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 126 Y--FGKFNIIDWQFAIHYSF---HPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp C--SSCEEEEEEESCGGGTC---STTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c--CCCeeEEEECchHHHhC---CHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 37999999877654321 111346899999999999999999754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=8.7e-05 Score=79.26 Aligned_cols=137 Identities=14% Similarity=0.132 Sum_probs=85.9
Q ss_pred CCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHh----cccc----cccccccccCCCCCCCcccccc
Q 005959 513 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGF----VGVLHDWCEAFPTYPRTYDLVH 584 (667)
Q Consensus 513 ~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~----~RGl----ig~~~~~c~~f~typ~tyDl~H 584 (667)
+....+|+|+|||.|.++.+|++....+ .++-.|-+..+..+- +.|+ -=+-+|..+++| ..||+|.
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p---~~~D~v~ 273 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGL---RGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIP---DGADVYL 273 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCC---SSCSEEE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCC---eEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCC---CCceEEE
Confidence 3456899999999999999998742122 122223222333222 2343 223345555554 4799999
Q ss_pred ccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH------------------------HHHHHHHHHHhhCCCe
Q 005959 585 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------------------RLIESARALTTRLKWD 640 (667)
Q Consensus 585 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------------------~~~~~~~~~~~~~~W~ 640 (667)
+..++..+.. -....+|-++-|+|+|||+++|.|.. ...++.+++++.--++
T Consensus 274 ~~~vlh~~~d----~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 349 (369)
T 3gwz_A 274 IKHVLHDWDD----DDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLR 349 (369)
T ss_dssp EESCGGGSCH----HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEE
T ss_pred hhhhhccCCH----HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCe
Confidence 9999987752 11235899999999999999995421 1145666777777787
Q ss_pred eEEeeeccCCCccEEEEEc
Q 005959 641 ARVIEIESNSDERLLICQK 659 (667)
Q Consensus 641 ~~~~~~~~~~~~~~li~~K 659 (667)
.........+...++.++|
T Consensus 350 ~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 350 VERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp EEEEEECSSSSEEEEEEEE
T ss_pred EEEEEECCCCCcEEEEEEe
Confidence 6655332334456776765
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.47 E-value=4.4e-05 Score=76.02 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=60.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc-cc-cccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl-ig-~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++ |+ +- +..|..+ ++ .+.+||+|.|....
T Consensus 43 ~~vLDlGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~~ 115 (252)
T 1wzn_A 43 RRVLDLACGTGIPTLELAERGY-----EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IA-FKNEFDAVTMFFST 115 (252)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CC-CCSCEEEEEECSSG
T ss_pred CEEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-cc-cCCCccEEEEcCCc
Confidence 5899999999999999987422 45555554 444444332 32 11 2233333 33 35789999875332
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
..+. ..-....+|-++-|+|+|||.+|+.
T Consensus 116 ~~~~---~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 116 IMYF---DEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp GGGS---CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC---CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2222 2223457889999999999999985
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.47 E-value=6.3e-05 Score=76.06 Aligned_cols=124 Identities=11% Similarity=0.105 Sum_probs=79.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cc-cccccccCCCCC-CCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTY-PRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~c~~f~ty-p~tyDl~H~~ 586 (667)
.+|||+|||.|.++..|.+.. +. +|+-+|-. ..+..+-+ .|+ +- +..|..+..+.+ +.+||+|-++
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~-~~---~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRT-KA---KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTC-CC---EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CEEEEcCCchhHHHHHHHHhc-CC---cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 479999999999999998732 21 45555554 34433322 243 22 223443333323 3799999997
Q ss_pred CccccccC--------------CCCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEe
Q 005959 587 GLLSLESG--------------HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 587 ~~~~~~~~--------------~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
--|..... ....+.+..++-++-|+|+|||.+++--..+...++...+....|+....
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 198 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRI 198 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEEE
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEEE
Confidence 65533200 00124566899999999999999999777777788888888888876543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=4e-05 Score=77.74 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=74.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc-cccc-cccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVL-HDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl-ig~~-~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.+|||+|||.|.++.++...+. +|+-+|-. ..+..+-++ |+ +-++ .|+.+.++ +.+||+|.++.++
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~-----~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG-----KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYA 194 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCH
T ss_pred CEEEEecCCCcHHHHHHHHhCC-----eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcH
Confidence 4799999999999999887322 44555543 444444442 33 2222 23444343 3689999987554
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCeeEEe
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 644 (667)
... ..++-++-|+|+|||++++.+- ....+++.++.+...+++...
T Consensus 195 ~~~---------~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~ 241 (254)
T 2nxc_A 195 ELH---------AALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp HHH---------HHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred HHH---------HHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence 432 3688999999999999999753 344677777777777876554
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=1.8e-05 Score=78.57 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=59.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cc-cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|+++.+|.+.. ..|+-+|-. ..+..+-+ .|+ +- +..|..+.. -+.+||+|.++.
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~ 152 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTG-----MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA--SFLKADVVFLSP 152 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTT-----CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG--GGCCCSEEEECC
T ss_pred CEEEECccccCHHHHHHHHcC-----CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc--ccCCCCEEEECC
Confidence 479999999999999999743 234444443 33333322 233 11 223333322 237999999988
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.|..... ....+.|+-|+|+|||++|+..
T Consensus 153 ~~~~~~~------~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 153 PWGGPDY------ATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CCSSGGG------GGSSSBCTTTSCSSCHHHHHHH
T ss_pred CcCCcch------hhhHHHHHHhhcCCcceeHHHH
Confidence 8776441 1236789999999999988754
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=4.4e-05 Score=81.20 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=60.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhh----Hhcccc---cccccccccCCCCCC-CccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGVLHDWCEAFPTYP-RTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~----~~~RGl---ig~~~~~c~~f~typ-~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..|.+. +. -.|+-+|....+.. +-+.|+ |-+++.=.+.++ +| .+||+|.+..+
T Consensus 68 ~~VLDvGcG~G~~~~~la~~--g~--~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKA--GA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWM 142 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHT--TC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCC
T ss_pred CEEEEEeccchHHHHHHHHC--CC--CEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHcc-CCCCceEEEEEccc
Confidence 57999999999999999874 21 12222333222322 233454 233332223332 34 89999999766
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
..... ..-.+..++-+++|+|+|||.+|.
T Consensus 143 ~~~l~---~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 143 GYCLF---YESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BBTBT---BTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccc---CchhHHHHHHHHHHhCCCCCEEcc
Confidence 55443 345566788999999999999974
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00012 Score=77.49 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=63.1
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcc----cccc----cccccccCCCCCCCcccccccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR----GFVG----VLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~R----Glig----~~~~~c~~f~typ~tyDl~H~~ 586 (667)
...+|||+|||.|.++.+|.+....+ .++-.|-+..+..+-++ |+-+ +-+|..+. .+|. +|+|.+.
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~D~v~~~ 263 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPE-ADAVLFC 263 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTC---EEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCC-CSEEEEE
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCCC-CCEEEEe
Confidence 45789999999999999998742122 22222333334433332 4422 23444332 1233 4999999
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.++..+. + -....+|-++-|+|+|||.++|-|
T Consensus 264 ~vlh~~~---d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 264 RILYSAN---E-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp SCGGGSC---H-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred chhccCC---H-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9998775 1 224568999999999999998865
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=2.5e-05 Score=80.70 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=34.2
Q ss_pred CCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 576 YPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 576 yp~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.+.+||+|.|..++...+-......+..+|-++-|+|||||++|+..
T Consensus 174 ~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp CCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 35899999998887433100012345679999999999999999964
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.45 E-value=3.4e-05 Score=75.59 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=73.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc---cc-ccccccCCCCCC-----Ccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GV-LHDWCEAFPTYP-----RTYDL 582 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli---g~-~~~~c~~f~typ-----~tyDl 582 (667)
.+|||+|||.|.++.+|.+.-.+- -.|+-+|-. ..+..+-+ .|+- -+ ..|..+.++..+ .+||+
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKD--GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTT--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 489999999999999998630001 123333433 33333322 2432 11 223334333333 68999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH------------HHHHHHHHHH----hhCCCeeEEeee
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARALT----TRLKWDARVIEI 646 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------~~~~~~~~~~----~~~~W~~~~~~~ 646 (667)
|.++..... ...++-++=|+|+|||++++.|-. .....++++. ..-+|+......
T Consensus 144 v~~~~~~~~---------~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 214 (225)
T 3tr6_A 144 IYIDADKAN---------TDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPI 214 (225)
T ss_dssp EEECSCGGG---------HHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred EEECCCHHH---------HHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 997553322 335778888999999999986432 1223334333 333466555421
Q ss_pred ccCCCccEEEEEcc
Q 005959 647 ESNSDERLLICQKP 660 (667)
Q Consensus 647 ~~~~~~~~li~~K~ 660 (667)
.+.++|++|.
T Consensus 215 ----~dG~~~~~k~ 224 (225)
T 3tr6_A 215 ----GDGLTLARKK 224 (225)
T ss_dssp ----TTCEEEEEEC
T ss_pred ----CCccEEEEEC
Confidence 3678888774
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=97.45 E-value=2.5e-05 Score=76.88 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=75.3
Q ss_pred eeEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCC-CchhhHhc----ccccc----cccccccCCCCCC-----Ccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYP-----RTY 580 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~~~~----RGlig----~~~~~c~~f~typ-----~ty 580 (667)
-++|||+|||.|.++..|.+.- ... .|+-+|-. ..+.++-+ .|+-. +..|..+.++..+ .+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 4689999999999999998620 111 33444433 33443333 24321 2334444455554 689
Q ss_pred ccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC-----HHHHHHHHHHHhhCCCeeEEeee--ccC-CCc
Q 005959 581 DLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEI--ESN-SDE 652 (667)
Q Consensus 581 Dl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~--~~~-~~~ 652 (667)
|+|.++.....+. ....++-++ |+|||||.+++.|- .+.++.+++ .=.++...... +.. ..+
T Consensus 136 D~V~~d~~~~~~~------~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~d 205 (221)
T 3u81_A 136 DMVFLDHWKDRYL------PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTHYSSYLEYMKVVD 205 (221)
T ss_dssp SEEEECSCGGGHH------HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH---CTTEEEEEEEEEETTTTEEE
T ss_pred EEEEEcCCcccch------HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh---CCCceEEEcccccccCCCCC
Confidence 9999876555443 112355667 99999999998653 344444443 33566555432 111 135
Q ss_pred cEEEEEc
Q 005959 653 RLLICQK 659 (667)
Q Consensus 653 ~~li~~K 659 (667)
.+.|+.+
T Consensus 206 G~~~~~~ 212 (221)
T 3u81_A 206 GLEKAIY 212 (221)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 6766654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.45 E-value=7.3e-05 Score=78.16 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=82.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcc----c----ccccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR----G----FVGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~R----G----lig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|+|+|||.|.++.+|.+. .|-. .++-.|-+..+..+-++ | +--+-+|..++ +|..||+|.+..+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~-~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~~~~v 242 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQA-EPSA--RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE---VPSNGDIYLLSRI 242 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHH-CTTC--EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC---CCSSCSEEEEESC
T ss_pred CEEEEeCCCchHHHHHHHHH-CCCC--EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC---CCCCCCEEEEchh
Confidence 89999999999999999874 2211 23333333344433322 2 22234555554 4578999999999
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcCH-------------H------------HHHHHHHHHhhCCCeeEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------R------------LIESARALTTRLKWDARV 643 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------------~------------~~~~~~~~~~~~~W~~~~ 643 (667)
+..|.. . ....+|-++-|+|+|||+++|.|.. + ..++++++++.--++...
T Consensus 243 l~~~~~--~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 318 (334)
T 2ip2_A 243 IGDLDE--A--ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVER 318 (334)
T ss_dssp GGGCCH--H--HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred ccCCCH--H--HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeE
Confidence 987752 2 2247899999999999999987421 0 134556666666666544
Q ss_pred eeeccCCCccEEEEEc
Q 005959 644 IEIESNSDERLLICQK 659 (667)
Q Consensus 644 ~~~~~~~~~~~li~~K 659 (667)
... .++...+++++|
T Consensus 319 ~~~-~~~~~~~i~~~~ 333 (334)
T 2ip2_A 319 IVD-LPMETRMIVAAR 333 (334)
T ss_dssp EEE-ETTTEEEEEEEE
T ss_pred EEE-CCCCCEEEEEEe
Confidence 322 223356777765
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00015 Score=76.49 Aligned_cols=136 Identities=22% Similarity=0.261 Sum_probs=84.2
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhc----ccc----cccccccccCCCCCCCcccccccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGF----VGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~----RGl----ig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
.-.+|||+|||.|.++.+|.+....+-+ +-.|-+..+..+-+ .|+ -=+-+|+.+++ |..||+|.+.
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~---~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v~~~ 256 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSA---TVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---PRKADAIILS 256 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SSCEEEEEEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEE---EEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---CCCccEEEEc
Confidence 3468999999999999999874323322 22232333333332 233 22345555544 4569999999
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcCH--------H------------------HHHHHHHHHhhCCCe
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA--------R------------------LIESARALTTRLKWD 640 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~--------~------------------~~~~~~~~~~~~~W~ 640 (667)
.++..+.. . ....+|-++-|+|+|||++++.|.. . ..++++++++.--++
T Consensus 257 ~vl~~~~~--~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 332 (360)
T 1tw3_A 257 FVLLNWPD--H--DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV 332 (360)
T ss_dssp SCGGGSCH--H--HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred ccccCCCH--H--HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCe
Confidence 99877652 1 1236899999999999999986533 0 134566677777777
Q ss_pred eEEeeeccCC----CccEEEEEcc
Q 005959 641 ARVIEIESNS----DERLLICQKP 660 (667)
Q Consensus 641 ~~~~~~~~~~----~~~~li~~K~ 660 (667)
......-.+. ...+++++|+
T Consensus 333 ~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 333 VEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEEEeCCCCcccCccEEEEEEeC
Confidence 6544322221 1567777774
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00013 Score=78.34 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=61.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhh----Hhcccc---cccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~----~~~RGl---ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.+|||+|||.|.++..|.+.+. . .|+-+|....+.. +-+.|+ |-+++.=.+.++ +|.+||+|.+..+.
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~-~---~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGA-R---KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS-LPEKVDVIISEWMG 139 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTC-S---EEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CSSCEEEEEECCCB
T ss_pred CEEEEeccCcCHHHHHHHhcCC-C---EEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC-cCCcceEEEEcChh
Confidence 5799999999999999987422 1 3333333333332 223444 333332233333 35899999996544
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.... ..-.+..++-+++|+|+|||.+|+.
T Consensus 140 ~~l~---~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 140 YFLL---RESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp TTBT---TTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hccc---chHHHHHHHHHHHhhCCCCeEEEEe
Confidence 3332 2234557889999999999999863
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00011 Score=75.57 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=59.5
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH-------HHHc----C-C--CceEEeecccC-CCCCCCCcc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL-------TLER----G-L--PAMIGSFASKQ-LPYPSLSFD 319 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~-------A~er----g-l--~~~~~~~da~~-Lpfpd~sFD 319 (667)
.+|||+|||+|..+..++.++. .|+++|.++.+.+. ++++ + + ++.+..+|+.. ++....+||
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fD 166 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCC
Confidence 6899999999999999999864 48999999976433 3221 1 1 35577777655 443234799
Q ss_pred EEEecccccccccCHHHHHHHHHhcccCCe
Q 005959 320 MLHCARCGVDWDQKDGILLLEVDRVLKPGG 349 (667)
Q Consensus 320 lV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG 349 (667)
+|++... ++.. ....++++..++|++.+
T Consensus 167 vV~lDP~-y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 167 VVYLDPM-FPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEEECCC-CCCC-CC-----HHHHHHHHHS
T ss_pred EEEEcCC-CCCc-ccchHHHHHHHHHHHhh
Confidence 9999866 3432 22356777778887755
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00045 Score=80.77 Aligned_cols=104 Identities=15% Similarity=0.057 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcC--CceeEEEEecCCHHHHHHH--HHc--------CCCc-eEEeecccCC-CCCCCCcc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLT--LER--------GLPA-MIGSFASKQL-PYPSLSFD 319 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g--~~~~sV~gvD~S~~ml~~A--~er--------gl~~-~~~~~da~~L-pfpd~sFD 319 (667)
..+|||.|||+|.++..++++. .....++|+|+++.+++.| +.. ++.. .+...+.... +...+.||
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 4799999999999999988763 1235689999999999888 321 2222 3333333332 23457899
Q ss_pred EEEecccccc-ccc--------------------------C-HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 320 MLHCARCGVD-WDQ--------------------------K-DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 320 lV~~s~~ll~-~~~--------------------------d-~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+|+++--... +.. + ...++..+.+.|+|||++++..|.
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 9999854211 100 1 124678899999999999999884
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.43 E-value=8.6e-05 Score=72.22 Aligned_cols=134 Identities=12% Similarity=0.157 Sum_probs=71.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCC------CCCC----Ccccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAF------PTYP----RTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f------~typ----~tyDl~H~~ 586 (667)
.+|||+|||.|+|+.+|.+.+..|+-+-+.|..... |+--+-.|..+.- ..++ .+||+|-++
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~--------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd 98 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIA--------GVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSD 98 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCT--------TCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCC--------CeEEEEccccCHHHHHHHHHHhhcccCCcceEEecC
Confidence 589999999999999998743345555555532211 2222223332210 0011 379999886
Q ss_pred Ccccccc---C--CCCCCCcchhheeccccccCCcEEEEEc-CHHHHHHHHHHHhhCCCee-EEeeec---cCCCccEEE
Q 005959 587 GLLSLES---G--HRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDA-RVIEIE---SNSDERLLI 656 (667)
Q Consensus 587 ~~~~~~~---~--~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~-~~~~~~---~~~~~~~li 656 (667)
.-..... . .........+|-++-|+|||||.|++.- .......+....+.. ++. .+.+.. +.+.|-.+|
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y~v 177 (191)
T 3dou_A 99 AMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSEIYIM 177 (191)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCEEEEE
T ss_pred CCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCceEEEE
Confidence 5321100 0 0000112356778889999999999742 112233444444443 443 333322 134688888
Q ss_pred EEc
Q 005959 657 CQK 659 (667)
Q Consensus 657 ~~K 659 (667)
|++
T Consensus 178 ~~~ 180 (191)
T 3dou_A 178 FFG 180 (191)
T ss_dssp EEE
T ss_pred Eee
Confidence 875
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.43 E-value=3.4e-05 Score=81.30 Aligned_cols=135 Identities=12% Similarity=0.048 Sum_probs=84.8
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhc----cccc----ccccccccCCCCCCCccccccccC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~----RGli----g~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+.|||+|||.|.++.+|.+....+-+ +-.|-+..+..+-+ .|+- -+-+|..+.-+..|..||+|.+.+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTG---QIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEE---EEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeE---EEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence 789999999999999999874212222 22233333333322 2432 233444333212467899999999
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcC--------H-------------------HHHHHHHHHHhhCCCe
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--------A-------------------RLIESARALTTRLKWD 640 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--------~-------------------~~~~~~~~~~~~~~W~ 640 (667)
++..+.. -....+|-++-|+|+|||.++|.|. . ...++++++++.--++
T Consensus 257 vlh~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 332 (352)
T 3mcz_A 257 CLHYFDA----REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLA 332 (352)
T ss_dssp CGGGSCH----HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCE
T ss_pred ccccCCH----HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCc
Confidence 9988752 1234689999999999999998641 0 0134456666666676
Q ss_pred eEEeeeccCCCccEEEEEcc
Q 005959 641 ARVIEIESNSDERLLICQKP 660 (667)
Q Consensus 641 ~~~~~~~~~~~~~~li~~K~ 660 (667)
..... .+...+++++||
T Consensus 333 ~~~~~---~g~~~l~~a~kp 349 (352)
T 3mcz_A 333 VGERS---IGRYTLLIGQRS 349 (352)
T ss_dssp EEEEE---ETTEEEEEEECC
T ss_pred eeeec---cCceEEEEEecC
Confidence 55431 123678888986
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00023 Score=69.59 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=71.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----ccc---c-cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV---G-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gli---g-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|.++.+|..... .|+-+|-. ..+..+-++ |+- - +..|..+.++.. .+||+|-+..
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~-----~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~ 130 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGG-----RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-PLPEAVFIGG 130 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS-CCCSEEEECS
T ss_pred CEEEEecCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC-CCCCEEEECC
Confidence 5799999999999999987422 34444443 444443332 432 1 122333323332 3699988644
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc-CHHHHHHHHHHHhhCCCeeEEe
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
.+ ... ++-++-|+|||||.+++.. ..+...++.++.+...+++...
T Consensus 131 ~~----------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 131 GG----------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp CC----------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEE
T ss_pred cc----------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEE
Confidence 22 234 8889999999999999975 4567777777777777776554
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00017 Score=74.06 Aligned_cols=135 Identities=10% Similarity=0.057 Sum_probs=71.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCC--C-CchhhHhcc--ccccc--ccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG--T-NHLPMILDR--GFVGV--LHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~--~-~~l~~~~~R--Glig~--~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
..|||+|||.|+|+..|.+. ..|.-+-+.|.-. + +.+. .-.. ++.-+ -.|-. .++ +.+||+|-|+..+
T Consensus 76 ~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m~~~a~~~~~~-~~~~~~~v~~~~~~~D~~-~l~--~~~fD~V~sd~~~ 150 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASR-PHVMDVRAYTLGVGGHEVPRI-TESYGWNIVKFKSRVDIH-TLP--VERTDVIMCDVGE 150 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCCSSCCCCCC-CCBTTGGGEEEECSCCTT-TSC--CCCCSEEEECCCC
T ss_pred CEEEEeCcCCCHHHHHHHHc-CcEEEEECchhhhhhhhhhhh-hhccCCCeEEEecccCHh-HCC--CCCCcEEEEeCcc
Confidence 58999999999999999874 5677766666311 1 1100 0000 11111 12222 244 5899999997552
Q ss_pred ccccCCC-CCCCcchhheeccccccCCc--EEEEE----cCHHHHHHHHHHHhhCCCeeEEeeec--cCCCccEEEEE
Q 005959 590 SLESGHR-HRCSTLDIFTEIDRILRPEG--WVIIR----DTARLIESARALTTRLKWDARVIEIE--SNSDERLLICQ 658 (667)
Q Consensus 590 ~~~~~~~-~~c~~~~~l~E~dRiLRP~G--~~i~~----d~~~~~~~~~~~~~~~~W~~~~~~~~--~~~~~~~li~~ 658 (667)
..-.... +.-.+ .+|-++.|+|+||| .|++. +..++++.++.+..... .+.+...- +.+.|-.+|+.
T Consensus 151 ~~~~~~~d~~~~l-~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~ 226 (265)
T 2oxt_A 151 SSPKWSVESERTI-KILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSR 226 (265)
T ss_dssp CCSCHHHHHHHHH-HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESS
T ss_pred cCCccchhHHHHH-HHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEec
Confidence 1100000 00011 26778999999999 99985 34434455554444322 33333311 23356666664
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00045 Score=72.00 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=65.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH---HcCCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~---ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
+..+||||||++|.++..++++. ...+|.++|+...+..... ..+.++......+.-..+..+.||+|+|..+ .+
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A-Pn 158 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG-ES 158 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-CC
T ss_pred CCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCc-CC
Confidence 45899999999999999999862 3567889998753211000 0011122222222223455678999999754 44
Q ss_pred cccCH-------HHHHHHHHhcccCC-eEEEEEeCCC
Q 005959 330 WDQKD-------GILLLEVDRVLKPG-GYFVWTSPLT 358 (667)
Q Consensus 330 ~~~d~-------~~~L~Ei~RvLKPG-G~Lvis~p~~ 358 (667)
.... ..+|.-+.++|+|| |.|++-.+.+
T Consensus 159 -sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~ 194 (300)
T 3eld_A 159 -SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAP 194 (300)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESST
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 2111 13566678999999 9999988753
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=9.8e-05 Score=74.14 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=66.2
Q ss_pred eEEEeccccchhhhhhhhhc------CCCeEEEEeecCCCCCchhhHhcccccccccccccC--CCCCCC-ccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEK------GKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEA--FPTYPR-TYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~------~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~--f~typ~-tyDl~H~~~ 587 (667)
.+|||+|||.|.+++.|.+. +..|..+-+.|.-.. ... -+...+-=+..|..+. ++..+. +||+|+++.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~-~a~-~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-IPA-SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-CCG-GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHH-HHh-ccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 48999999999999998763 233444443332211 110 0111121123344432 232223 699999754
Q ss_pred ccccccCCCCCCCcchhheeccc-cccCCcEEEEEcCHHH-----HHHHHHHHhhC--CCee
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDR-ILRPEGWVIIRDTARL-----IESARALTTRL--KWDA 641 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dR-iLRP~G~~i~~d~~~~-----~~~~~~~~~~~--~W~~ 641 (667)
. + -....+|-|+-| +|+|||++++.|.... -+.+..+.+.. .+++
T Consensus 161 ~----~-----~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 161 A----H-----ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp S----C-----SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred c----h-----HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 3 1 145578999998 9999999999764211 13566666666 4554
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=97.40 E-value=4.1e-05 Score=74.79 Aligned_cols=120 Identities=11% Similarity=0.040 Sum_probs=74.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-cc--------------cccccccccCCCCCC---
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-GF--------------VGVLHDWCEAFPTYP--- 577 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-Gl--------------ig~~~~~c~~f~typ--- 577 (667)
..|||+|||.|.++..|.+.+. .|+-+|-. .-|..+.+| +. ..-+.-.|--+-..|
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~-----~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGY-----HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCC-----EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCCC-----eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 3699999999999999987432 45555544 455555544 11 011111222222233
Q ss_pred -CccccccccCccccccCCCCCCCcchhheeccccccCCcEEE-E-EcCH----------HHHHHHHHHHhhCCCeeEEe
Q 005959 578 -RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVI-I-RDTA----------RLIESARALTTRLKWDARVI 644 (667)
Q Consensus 578 -~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i-~-~d~~----------~~~~~~~~~~~~~~W~~~~~ 644 (667)
.+||+|-+..+|.... ......++-||-|+|||||.++ + -+.. -..++++.+... .|++...
T Consensus 99 ~~~fD~v~~~~~l~~l~----~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALP----ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp HHSEEEEEEESCGGGSC----HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred CCCEEEEEECcchhhCC----HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEe
Confidence 6899999888876653 1233457889999999999833 2 2210 125677777777 7886655
Q ss_pred ee
Q 005959 645 EI 646 (667)
Q Consensus 645 ~~ 646 (667)
+.
T Consensus 174 ~~ 175 (203)
T 1pjz_A 174 GG 175 (203)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00012 Score=74.96 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=63.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhc-------CCc----eeEEEEecCCH---HHHHHH-----------HHc--C-------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK-------ELL----TMCIANYEASG---SQVQLT-----------LER--G------- 298 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~-------g~~----~~sV~gvD~S~---~ml~~A-----------~er--g------- 298 (667)
...+|||||+|+|..+..+++. +.. ...++++|..+ +++..+ ++. .
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3468999999999988776543 221 36788888665 555433 211 0
Q ss_pred ----------CCceEEeecccC-CCCCC----CCccEEEecccccccccC--HHHHHHHHHhcccCCeEEEE
Q 005959 299 ----------LPAMIGSFASKQ-LPYPS----LSFDMLHCARCGVDWDQK--DGILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 299 ----------l~~~~~~~da~~-Lpfpd----~sFDlV~~s~~ll~~~~d--~~~~L~Ei~RvLKPGG~Lvi 353 (667)
.++.+..+|+.. ++.-+ ..||+|+.-...-.-.++ ...+|.++.++|+|||+|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 123355666554 44322 279999985211111122 25799999999999999885
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00096 Score=66.05 Aligned_cols=92 Identities=10% Similarity=-0.053 Sum_probs=64.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC----CceEEeecccC---------------
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQ--------------- 310 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl----~~~~~~~da~~--------------- 310 (667)
.++||||||| ..|..|++. . ...|+.+|.++...+.|++. ++ ++.+..+++..
T Consensus 31 a~~VLEiGtG--ySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCEEEEECch--HHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 4799999985 677778774 1 46799999999998887642 44 34556566432
Q ss_pred CC--------C-CCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 311 LP--------Y-PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 311 Lp--------f-pd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
++ . ..++||+|+.-.- .....+..+.+.|+|||++++..
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR------FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC------CchhHHHHHHHhcCCCeEEEEeC
Confidence 22 2 2368999997642 22356666779999999997754
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=97.38 E-value=4e-05 Score=77.76 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=45.6
Q ss_pred CccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH----------------HHHHHHHHHHhhCCCee
Q 005959 578 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDA 641 (667)
Q Consensus 578 ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~ 641 (667)
.+||+|-|+.++..... +.-.+..+|-+|-|+|+|||+||+++.. -..+++++++..--.++
T Consensus 155 ~~fD~V~~~~~l~~i~~--~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i 232 (263)
T 2a14_A 155 PLADCVLTLLAMECACC--SLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 232 (263)
T ss_dssp CCEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCEeeehHHHHHhcC--CHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEE
Confidence 58999999999876431 2234457899999999999999998411 13456777666665655
Q ss_pred EEe
Q 005959 642 RVI 644 (667)
Q Consensus 642 ~~~ 644 (667)
...
T Consensus 233 ~~~ 235 (263)
T 2a14_A 233 EQL 235 (263)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.37 E-value=3.5e-05 Score=76.54 Aligned_cols=97 Identities=9% Similarity=-0.081 Sum_probs=62.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----ccccccccccC-CC-CCC--CccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEA-FP-TYP--RTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----lig~~~~~c~~-f~-typ--~tyDl~H~~~ 587 (667)
..|||+|||.|.++..|.+... +|+-+|-. ..+..+-++- +--+..|..+. ++ .++ ..||+|.+..
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP-----RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS-----CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CeEEEEcCCCCHHHHHHHHhCC-----CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 4699999999999999987433 45555544 4454444432 11112222220 00 111 2399999998
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++.... .-....+|-|+-|+|+|||++++.+
T Consensus 133 ~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 133 GFHHIP----VEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp SSTTSC----GGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhhcCC----HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 887664 2345679999999999999988764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=7e-05 Score=76.24 Aligned_cols=120 Identities=14% Similarity=0.064 Sum_probs=75.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-cc-------------------cccccccccCCCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-GF-------------------VGVLHDWCEAFPT 575 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-Gl-------------------ig~~~~~c~~f~t 575 (667)
..|||+|||.|.++..|.+.+. +|+-+|-. .-+..+.++ ++ -.-+.-.|--+..
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~-----~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH-----TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC-----EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CeEEEeCCCCcHHHHHHHHCCC-----eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 3699999999999999998432 45666654 445444332 11 0011111222222
Q ss_pred CC----CccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc----C--------HHHHHHHHHHHhhCCC
Q 005959 576 YP----RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD----T--------ARLIESARALTTRLKW 639 (667)
Q Consensus 576 yp----~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d----~--------~~~~~~~~~~~~~~~W 639 (667)
.| .+||+|-+..+|.... ......++-||-|+|||||.+++-. . .-.-++++.+... .|
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~----~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f 219 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAIN----PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KC 219 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSC----GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TE
T ss_pred CCcccCCCEEEEEEhhhhhhCC----HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-Ce
Confidence 22 6899999988887654 2334568899999999999996421 0 0124677777776 48
Q ss_pred eeEEeee
Q 005959 640 DARVIEI 646 (667)
Q Consensus 640 ~~~~~~~ 646 (667)
++...+.
T Consensus 220 ~v~~~~~ 226 (252)
T 2gb4_A 220 SMQCLEE 226 (252)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 8766543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00016 Score=75.36 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=83.5
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhc----ccccc----cccccccCCCCCCCcccccccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~----RGlig----~~~~~c~~f~typ~tyDl~H~~ 586 (667)
.-.+|||+|||.|.++.+|.+. .|-. .++-.|-+..+..+-+ .|+-+ +-+|..+. .+|..||+|.+.
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~-~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~~ 239 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQH-NPNA--EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLLP 239 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHH-CTTC--EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHH-CCCC--eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEEc
Confidence 3468999999999999999873 2211 3333333322332322 23322 23343331 245569999999
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcCH---------------------------HHHHHHHHHHhhCCC
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------------------RLIESARALTTRLKW 639 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------------------------~~~~~~~~~~~~~~W 639 (667)
.++..+.. -....+|-++-|+|+|||++++.|.. ...++++++++.--+
T Consensus 240 ~~l~~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf 315 (335)
T 2r3s_A 240 NFLHHFDV----ATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGF 315 (335)
T ss_dssp SCGGGSCH----HHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTC
T ss_pred chhccCCH----HHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCC
Confidence 99887741 22347899999999999999985421 014566777777777
Q ss_pred eeEEeeeccCCCccEEEEEcc
Q 005959 640 DARVIEIESNSDERLLICQKP 660 (667)
Q Consensus 640 ~~~~~~~~~~~~~~~li~~K~ 660 (667)
+...... ......++++++|
T Consensus 316 ~~~~~~~-~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 316 SHSQLHS-LPTTQQQVIVAYK 335 (335)
T ss_dssp SEEEEEC-CTTSSSEEEEEEC
T ss_pred CeeeEEE-CCCCceeEEEecC
Confidence 7555432 2223567777654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.35 E-value=9.6e-05 Score=73.91 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=71.3
Q ss_pred eEEEeccccchhhhhhhhhc-CCCeEEEEeecCCCC-CchhhHhcc----ccc----ccccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GFV----GVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~~~~R----Gli----g~~~~~c~~f~typ~tyDl~H~~ 586 (667)
.+|||+|||.|.++.+|.+. .... .|+-.|-. ..+..+-++ |+- -+..|..+.|+. .+||+|.++
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~v~~~ 169 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE--ENVDHVILD 169 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC--CSEEEEEEC
T ss_pred CEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC--CCcCEEEEC
Confidence 47999999999999999874 1111 23334443 445444443 542 245677777664 789999872
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEc-CHHHHHHHHHHHhhCC
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLK 638 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~ 638 (667)
--....++-++-|+|+|||.+++.. ..+..+++.+.++...
T Consensus 170 -----------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 170 -----------LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp -----------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred -----------CCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 1222468999999999999999865 4566677777666665
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00013 Score=72.44 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=67.9
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccccc---cccccccC----CCCCCCccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVG---VLHDWCEA----FPTYPRTYDLV 583 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGlig---~~~~~c~~----f~typ~tyDl~ 583 (667)
-..|||+|||.|.++.+|.+..... +|+-+|-. ..+..+. +.|+-. +.+|-.+. |+ +.+||+|
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~---~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~--~~~~d~v 109 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQ---DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIP--DNSLRMV 109 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSC--TTCEEEE
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCC---eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcC--CCChheE
Confidence 3579999999999999998642232 34444544 4444333 335411 12232222 44 4899999
Q ss_pred cccCccccccCCC---CCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhh
Q 005959 584 HAEGLLSLESGHR---HRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTR 636 (667)
Q Consensus 584 H~~~~~~~~~~~~---~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~ 636 (667)
++... ..|...+ .|-.-..++-|+-|+|+|||++++. |.....+.+.+++..
T Consensus 110 ~~~~~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 110 QLFFP-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp EEESC-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred EEeCC-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 97522 2222100 1111225888999999999999986 555556666665544
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00022 Score=74.76 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=54.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhH-hc-ccc--cccccccccCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMI-LD-RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~-~~-RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
..|||+|||.|+|+..|.+. ..|.-+-+....++..+..+ .+ .|. +-+... ...+..-+.+||+|.|+..++..
T Consensus 84 ~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~~~~~g 161 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGESSP 161 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCCCCS
T ss_pred CEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECCccccC
Confidence 58999999999999999874 34544433111111111100 01 111 111111 01111113689999998766410
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
....+.-....+|-++-|+|+|||.|++.
T Consensus 162 ~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 162 NPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 00000000113678899999999999985
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00012 Score=74.28 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=80.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cccccccccCCC---CCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFP---TYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~c~~f~---typ~tyDl~H~~ 586 (667)
.+|||+|||.|.++..|... .+- ..|+-+|.. ..+.++-+ -|+ |-+++.--+.++ .++.+||+|-+.
T Consensus 82 ~~vLDiG~G~G~~~i~la~~-~~~--~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 82 LRVLDLGTGAGFPGLPLKIV-RPE--LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CEEEEETCTTTTTHHHHHHH-CTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CEEEEEcCCCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 57999999999998887652 121 134444543 33433332 354 334444334444 345799999874
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEc---CHHHHHHHHHHHhhCCCeeEEeeec---cCCCc-cEEEEEc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD---TARLIESARALTTRLKWDARVIEIE---SNSDE-RLLICQK 659 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d---~~~~~~~~~~~~~~~~W~~~~~~~~---~~~~~-~~li~~K 659 (667)
.+ ..+..++-++-|+|+|||.+++-. ..+.+.+++..++.+.++......- ....+ .+++.+|
T Consensus 159 a~----------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 159 AV----------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp SS----------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred Cc----------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEe
Confidence 32 234568888999999999988743 4566777777777788876543221 12233 4555666
Q ss_pred c
Q 005959 660 P 660 (667)
Q Consensus 660 ~ 660 (667)
.
T Consensus 229 ~ 229 (249)
T 3g89_A 229 T 229 (249)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=6.7e-05 Score=81.71 Aligned_cols=130 Identities=12% Similarity=0.169 Sum_probs=79.7
Q ss_pred HHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccc------chhhhhhhhhc---CCCeEEEEeecCCCCCc
Q 005959 483 TAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAH------FGGFNSALLEK---GKSVWVMNVVPTIGTNH 553 (667)
Q Consensus 483 ~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~------~g~faa~l~~~---~~~vwvmnv~p~~~~~~ 553 (667)
.-...|.+.|.++.. .-.+|||+||| .||....|... +..|..+-+.|.-
T Consensus 201 ~y~~~Ye~lL~~l~~-----------------~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m---- 259 (419)
T 3sso_A 201 WFTPHYDRHFRDYRN-----------------QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS---- 259 (419)
T ss_dssp BCHHHHHHHHGGGTT-----------------SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG----
T ss_pred hHHHHHHHHHHhhcC-----------------CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH----
Confidence 345677777765531 23689999999 78877777652 2234444444432
Q ss_pred hhhHhccccccccccccc-CCCCC----CCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC-----
Q 005959 554 LPMILDRGFVGVLHDWCE-AFPTY----PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT----- 623 (667)
Q Consensus 554 l~~~~~RGlig~~~~~c~-~f~ty----p~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----- 623 (667)
. .....+-=+..|-.+ +|... +.+||+|.+++. ++. ......|-|+=|+|||||++|+.|-
T Consensus 260 ~--~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs--H~~-----~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~ 330 (419)
T 3sso_A 260 H--VDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS--HIN-----AHVRTSFAALFPHVRPGGLYVIEDMWTAYW 330 (419)
T ss_dssp G--GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC--CCH-----HHHHHHHHHHGGGEEEEEEEEEECGGGGGC
T ss_pred h--hcCCCcEEEEecccccchhhhhhcccCCccEEEECCc--ccc-----hhHHHHHHHHHHhcCCCeEEEEEecccccC
Confidence 1 111122112222221 12200 378999998754 222 2345689999999999999999632
Q ss_pred -------------HHHHHHHHHHHhhCCCeeE
Q 005959 624 -------------ARLIESARALTTRLKWDAR 642 (667)
Q Consensus 624 -------------~~~~~~~~~~~~~~~W~~~ 642 (667)
..+++.++++.+.++|.-.
T Consensus 331 p~f~G~~~~~~~~~tii~~lk~l~D~l~~~~~ 362 (419)
T 3sso_A 331 PGFGGQADPQECSGTSLGLLKSLIDAIQHQEL 362 (419)
T ss_dssp TBTTCCSSTTCCTTSHHHHHHHHHHHHTGGGS
T ss_pred cccCCCccCCcchhHHHHHHHHHHHHhccccc
Confidence 3578999999999998643
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00038 Score=65.56 Aligned_cols=83 Identities=11% Similarity=0.060 Sum_probs=58.0
Q ss_pred CCEEEEeCCCCc-hHHHHHhh-cCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCC--CCccEEEecccccc
Q 005959 254 VRTILDIGCGYG-SFGAHLFS-KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS--LSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG-~~t~~La~-~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd--~sFDlV~~s~~ll~ 329 (667)
..+|||||||.| ..+..|++ .|+ .|+++|+++..++ +.+.|+.+ |..+ ..||+|++.+.
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~g~---~V~atDInp~Av~----------~v~dDiF~-P~~~~Y~~~DLIYsirP--- 98 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHSKV---DLVLTDIKPSHGG----------IVRDDITS-PRMEIYRGAALIYSIRP--- 98 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHSCC---EEEEECSSCSSTT----------EECCCSSS-CCHHHHTTEEEEEEESC---
T ss_pred CCcEEEEccCCChHHHHHHHHhCCC---eEEEEECCccccc----------eEEccCCC-CcccccCCcCEEEEcCC---
Confidence 469999999999 69999997 654 4899999987665 55556554 3332 47999998765
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.++....+.++.+.+ |.-++|...
T Consensus 99 -P~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 99 -PAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp -CTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred -CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 344455666666544 456666544
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00015 Score=76.36 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=59.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHh----cccc---cccccccccCCCCCC-CccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGF---VGVLHDWCEAFPTYP-RTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~----~RGl---ig~~~~~c~~f~typ-~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..+.+. +. -.|+-+|....+..+- +.|+ |-+++.-.+.++ .| .+||+|.+..+
T Consensus 40 ~~VLDiGcGtG~ls~~la~~--g~--~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKH--GA--KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWM 114 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHT--CC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCC
T ss_pred CEEEEecCccHHHHHHHHHC--CC--CEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCc
Confidence 47999999999999988873 21 1233333332233222 2354 223332223333 34 78999999766
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVI 619 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i 619 (667)
+.... ..-.+..++-+++|+|+|||.+|
T Consensus 115 ~~~l~---~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 115 GYFLL---YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BTTBS---TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hhhcc---cHHHHHHHHHHHHhhcCCCeEEE
Confidence 54443 33456678899999999999998
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.26 E-value=6.2e-05 Score=74.05 Aligned_cols=89 Identities=16% Similarity=0.095 Sum_probs=59.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-----cccccccccccCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-----Glig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.+|||+|||.|.++..|.+.. -+|+-+|-. ..+..+-++ .+--+..|..+.++ -+.+||+|.++.++.
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIV-----DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAP 145 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHS-----SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBS
T ss_pred CEEEEEcCCCCHHHHHHHHHc-----CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHH
Confidence 379999999999999998742 244444543 444444443 22222334444333 237899999987775
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
... -++-|+|+|||.+++...
T Consensus 146 ~~~------------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 146 TLL------------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp SCC------------HHHHHTEEEEEEEEEEEC
T ss_pred HHH------------HHHHHHcCCCcEEEEEEc
Confidence 443 368899999999999754
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=9.5e-05 Score=77.43 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=74.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCC-CCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTY-PRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~ty-p~tyDl~H~~~~~~ 590 (667)
..|||+|||.|+++|.++..... -.|+-+|-. ..+..+-++ |+ .-+.-.|.-...+ +.+||+|..+..-
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~g---a~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVYG---MRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTTC---CEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred CEEEEECCCccHHHHHHHHHccC---CEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 58999999999998776542112 234444443 455544443 55 2121112212222 3899999875431
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcCHHHHH----HH-HHHHhhCCCeeEEeeeccCC-CccEEEEEcc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE----SA-RALTTRLKWDARVIEIESNS-DERLLICQKP 660 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~----~~-~~~~~~~~W~~~~~~~~~~~-~~~~li~~K~ 660 (667)
-....++-|+-|+|||||.+++++....-. .+ ..+.+ .|+.....+..+. .+.|++++|.
T Consensus 199 --------~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~~v~N~vv~a~k~ 264 (298)
T 3fpf_A 199 --------EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSGKVNNTSVLVFKC 264 (298)
T ss_dssp --------SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCTTCCCEEEEEEEC
T ss_pred --------cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCCCcCcEEEEEEcc
Confidence 123368999999999999999987532100 00 01222 5776665544443 3557777763
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.25 E-value=7.4e-05 Score=74.38 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=76.2
Q ss_pred EEEeccccchhhhhhhhhc-CCCeEEEEeecCCCC-CchhhHh----ccccc----cc-ccccccCCCCC-CCccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMIL----DRGFV----GV-LHDWCEAFPTY-PRTYDLVHA 585 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~~~----~RGli----g~-~~~~c~~f~ty-p~tyDl~H~ 585 (667)
+|||+|||.|.++.+|.+. ...- .|+-+|-. ..+.++- +.|+- -+ ..|-.+..+.+ +.+||+|.+
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 8999999999999988762 0011 23333332 2332221 22332 11 12222333333 478999987
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcC------------HHHHHHHHHHHhhCCCeeEEeeeccCCCcc
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARALTTRLKWDARVIEIESNSDER 653 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 653 (667)
+..... ...++-++-|+|||||++++.|- ......++++.+.++++-.+.-+----.+.
T Consensus 136 d~~~~~---------~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdG 206 (221)
T 3dr5_A 136 QVSPMD---------LKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAG 206 (221)
T ss_dssp CCCTTT---------HHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTC
T ss_pred cCcHHH---------HHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccch
Confidence 643332 33577788899999999998422 133445666666666652221111111478
Q ss_pred EEEEEccccc
Q 005959 654 LLICQKPFFK 663 (667)
Q Consensus 654 ~li~~K~~~~ 663 (667)
++|++|+.-.
T Consensus 207 l~~~~~~~~~ 216 (221)
T 3dr5_A 207 LTVVTKALEH 216 (221)
T ss_dssp EEEEEECCCC
T ss_pred HHHHHHHHHh
Confidence 9999998754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.24 E-value=6.2e-05 Score=75.02 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=72.1
Q ss_pred eEEEeccccchhhhhhhhhcCC-CeEEEEeecCCCC-CchhhHhc----ccccc----cccccccCCCCCC-----Cccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYP-----RTYD 581 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~-~vwvmnv~p~~~~-~~l~~~~~----RGlig----~~~~~c~~f~typ-----~tyD 581 (667)
++|||+|||.|.++.+|.+.-. .. .|+-.|-. ..+.++-+ .|+-. +..|..+.++..| .+||
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 5899999999999999986311 11 22333332 33333322 24311 1222222222222 6799
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC------------HHHHHHHHHHHh----hCCCeeEEee
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARALTT----RLKWDARVIE 645 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~~~~~----~~~W~~~~~~ 645 (667)
+|.++..... ...++-++-|+|||||++++.+. ......++++.+ .-+++.....
T Consensus 151 ~V~~d~~~~~---------~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 221 (232)
T 3cbg_A 151 LIFIDADKRN---------YPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIP 221 (232)
T ss_dssp EEEECSCGGG---------HHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEEC
T ss_pred EEEECCCHHH---------HHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEE
Confidence 9988654322 33578888899999999999532 223344444443 3456555543
Q ss_pred eccCCCccEEEEEcc
Q 005959 646 IESNSDERLLICQKP 660 (667)
Q Consensus 646 ~~~~~~~~~li~~K~ 660 (667)
+ .+.+.+++|.
T Consensus 222 ~----~dG~~~~~~~ 232 (232)
T 3cbg_A 222 L----GDGMTLALKK 232 (232)
T ss_dssp S----BTCEEEEEEC
T ss_pred c----CCeEEEEEeC
Confidence 2 2568888773
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.22 E-value=6.4e-05 Score=71.94 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=59.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cc-cccccccCCCCC-CCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPTY-PRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig-~~~~~c~~f~ty-p~tyDl~H~~~ 587 (667)
.+|||+|||.|.++.++++.+.. .|+-+|-. ..+..+-+ .|+ +- +..|..+..+.+ +.+||+|-++.
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGAA----SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CEEEEeCCCcCHHHHHHHHCCCC----eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 47999999999999977763211 23444433 33333322 233 11 222332222222 47899999977
Q ss_pred ccccccCCCCCCCcchhheeccc--cccCCcEEEEEcC
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDR--ILRPEGWVIIRDT 623 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dR--iLRP~G~~i~~d~ 623 (667)
.|.... -.+..++-++-| +|+|||.+++...
T Consensus 122 p~~~~~-----~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 122 PYNVDS-----ADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp CTTSCH-----HHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred CCCcch-----hhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 655421 234578888888 9999999999753
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00048 Score=69.68 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=63.4
Q ss_pred CCCCCCCceeEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhccc-ccccccccccC--CCCCCCccc
Q 005959 508 DPSPPYNMVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRG-FVGVLHDWCEA--FPTYPRTYD 581 (667)
Q Consensus 508 ~~~~~~~~~R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~RG-lig~~~~~c~~--f~typ~tyD 581 (667)
...+++|. +|||+|||.|.|+.+|.+. +-.|....+.|.-...-...+-+++ +.-+..|-+.+ .+.-+.++|
T Consensus 72 ~l~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 72 ELPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCCCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred hcCCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEE
Confidence 34455554 8999999999999999852 1235555554432211122333444 44555555543 222336788
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+|+++-.+. -....++-|+-|+|+|||.++|.
T Consensus 150 vVf~d~~~~--------~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 150 GLYADVAQP--------EQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp EEEECCCCT--------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEeccCC--------hhHHHHHHHHHHhccCCCEEEEE
Confidence 887642211 12346888999999999999986
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.21 E-value=3.3e-05 Score=71.75 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=56.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc-c-ccccccccCCCCCC---Ccccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-V-GVLHDWCEAFPTYP---RTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl-i-g~~~~~c~~f~typ---~tyDl~H~~ 586 (667)
.+|||+|||.|.++.+|.+.... |+-+|-. ..+..+-+ .|+ + =+..|..+..+..+ .+||+|.++
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~~-----v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGWE-----AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTCE-----EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEeCCCcCHHHHHHHHCCCe-----EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 47999999999999999874322 4555544 34433332 232 1 11223333222222 379999998
Q ss_pred CccccccCCCCCCCcchhheecc--ccccCCcEEEEEcC
Q 005959 587 GLLSLESGHRHRCSTLDIFTEID--RILRPEGWVIIRDT 623 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~d--RiLRP~G~~i~~d~ 623 (667)
..|. . . ...++-++- |+|+|||.+++...
T Consensus 118 ~~~~--~---~---~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 118 PPYA--M---D---LAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCTT--S---C---TTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred CCCc--h---h---HHHHHHHHHhhcccCCCcEEEEEeC
Confidence 7765 1 1 223444555 99999999999643
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00026 Score=70.89 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=66.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc------------ccc---ccccccccCCCC-C-CC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------------GFV---GVLHDWCEAFPT-Y-PR 578 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R------------Gli---g~~~~~c~~f~t-y-p~ 578 (667)
..|||+|||.|+|+.+|...... .+|+-+|-. .-+..+-++ |+- -+..|..+.++. + +.
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPE---DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTT---SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CEEEEEcCCCCHHHHHHHHhCCC---CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 57999999999999999863212 244444543 333333221 431 122233222221 2 26
Q ss_pred ccccccccCccc-ccc---CCCCCCCcchhheeccccccCCcEEEE-EcCHHHHHHHHHHHhhCCC
Q 005959 579 TYDLVHAEGLLS-LES---GHRHRCSTLDIFTEIDRILRPEGWVII-RDTARLIESARALTTRLKW 639 (667)
Q Consensus 579 tyDl~H~~~~~~-~~~---~~~~~c~~~~~l~E~dRiLRP~G~~i~-~d~~~~~~~~~~~~~~~~W 639 (667)
++|.|... |. .+. ....|-....++-++-|+|+|||.+++ .|..+..+.+.+.+..-.+
T Consensus 128 ~~d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 128 QLSKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp CEEEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred ccCEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 78877532 21 111 000112224789999999999999998 4776666666655554433
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00024 Score=71.37 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=67.9
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----------ccc--cc-cccccccCCC--CCCCc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----------RGF--VG-VLHDWCEAFP--TYPRT 579 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----------RGl--ig-~~~~~c~~f~--typ~t 579 (667)
-..|||+|||.|.|+.+|....... +|+-+|-. ..+..+-+ .|+ |- +..|..+.++ .-+.+
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~---~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDT---LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTS---EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCC---eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 3579999999999999998632122 33333433 33322221 232 11 2223322222 11479
Q ss_pred cccccccCccccccC---CCCCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhCC-CeeE
Q 005959 580 YDLVHAEGLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLK-WDAR 642 (667)
Q Consensus 580 yDl~H~~~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~-W~~~ 642 (667)
||+|..... ..|.. .+.|.....+|-|+-|+|+|||.+++. |.....+.+.+.+..-- |+..
T Consensus 124 ~D~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 124 LTKMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp EEEEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEEE
T ss_pred eeEEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 999875321 22210 113344457899999999999999985 66666666666554443 4433
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00032 Score=70.65 Aligned_cols=100 Identities=12% Similarity=0.088 Sum_probs=57.8
Q ss_pred eEEEeccccchhhhhhhhhcCCC-eEEEEeecCCC----CCchhhHhcc----cc---ccc-ccc-cc-cCCCCCCCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIG----TNHLPMILDR----GF---VGV-LHD-WC-EAFPTYPRTYD 581 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~-vwvmnv~p~~~----~~~l~~~~~R----Gl---ig~-~~~-~c-~~f~typ~tyD 581 (667)
..|||+|||.|.++..|.+...+ .-|.-|=+... +..+..+-++ |+ +-+ ..| .. +..+.-+.+||
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 124 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFD 124 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCS
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEE
Confidence 47999999999999999873111 32333333221 1255544332 32 111 122 21 22222238999
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+|++.+++.+.. + ...++-.+.++++|||++++.+
T Consensus 125 ~v~~~~~l~~~~---~---~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 125 RVVLAHSLWYFA---S---ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp EEEEESCGGGSS---C---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred EEEEccchhhCC---C---HHHHHHHHHHHhCCCCEEEEEE
Confidence 999999987665 2 1234445566666799999963
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00024 Score=70.30 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=71.2
Q ss_pred eEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhcc-cccccccccccC--CCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEA--FPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~R-Glig~~~~~c~~--f~typ~tyDl~H~~~~~~ 590 (667)
..|||+|||.|.|+..|.+. ...|..+-+.|.--...+..+-.+ ++--+..|..+. ++..+.+||+|.++.. .
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~-~ 157 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA-Q 157 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC-C
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC-C
Confidence 47999999999999999863 123333322221000112222222 232233444432 2323478999998443 1
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcCHH----------HHHHHHHHHhhCCCeeEE-eeeccCC-CccEEEEE
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR----------LIESARALTTRLKWDARV-IEIESNS-DERLLICQ 658 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~----------~~~~~~~~~~~~~W~~~~-~~~~~~~-~~~~li~~ 658 (667)
.. ....++.++-|+|+|||.+++.-... .+.+..++++...|+... .+.+.-+ ..-+++++
T Consensus 158 ~~-------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 158 PD-------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp TT-------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSSSEEEEEEE
T ss_pred cc-------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCccCCcEEEEEE
Confidence 11 11235677999999999999953321 122223555666677654 3333222 23445555
Q ss_pred c
Q 005959 659 K 659 (667)
Q Consensus 659 K 659 (667)
|
T Consensus 231 ~ 231 (233)
T 2ipx_A 231 Y 231 (233)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.18 E-value=5.7e-05 Score=74.76 Aligned_cols=94 Identities=11% Similarity=0.182 Sum_probs=60.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cc-cccccccCCCCC--CCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VG-VLHDWCEAFPTY--PRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig-~~~~~c~~f~ty--p~tyDl~H~ 585 (667)
.+|||+|||.|.++.+|.+. .+ .-+|+-+|-. ..+..+-++ |+ |- +..|..+..+.. +.+||+|.+
T Consensus 56 ~~vLdiG~G~G~~~~~la~~-~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQA-LP--EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHH-CT--TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHH-CC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 48999999999999999873 11 1234444543 444444443 43 11 233444433333 478999988
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+..... ...+|-++-|+|+|||.+++.+
T Consensus 133 ~~~~~~---------~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAKGQ---------YRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGGSC---------HHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCHHH---------HHHHHHHHHHHcCCCeEEEEEc
Confidence 655432 3368889999999999999974
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00079 Score=68.36 Aligned_cols=120 Identities=12% Similarity=0.043 Sum_probs=70.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc-------ccc---cccc-cccccCCC-----CC-CC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD-------RGF---VGVL-HDWCEAFP-----TY-PR 578 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~-------RGl---ig~~-~~~c~~f~-----ty-p~ 578 (667)
.+|||+|||.|.++-.|... .+- .+|+-+|-. ..+..+-+ .|+ +-++ .|..+..+ .+ +.
T Consensus 38 ~~VLDlG~G~G~~~l~la~~-~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 38 CRIADLGAGAGAAGMAVAAR-LEK--AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp EEEEECCSSSSHHHHHHHHH-CTT--EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CEEEEeCChHhHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 57999999999999988863 221 234444443 32322221 233 1222 23332211 12 37
Q ss_pred ccccccccCccccccC------------CCCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCe
Q 005959 579 TYDLVHAEGLLSLESG------------HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWD 640 (667)
Q Consensus 579 tyDl~H~~~~~~~~~~------------~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~ 640 (667)
+||+|-++--|..... ....+.+..++-++-|+|+|||++++--..+...++...++.- |.
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~ 187 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FG 187 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CC
Confidence 8999999854432200 0033567788999999999999999876666666777766663 65
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00015 Score=74.62 Aligned_cols=95 Identities=14% Similarity=0.018 Sum_probs=63.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-cccccccccC-C---CCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCEA-F---PTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig~~~~~c~~-f---~typ~tyDl~H~~~~~~ 590 (667)
..|||+|||.|.++..|.+... .|+-+|.. .-+..+-++-- -.+-.+|... + ...+.+||+|-++.++.
T Consensus 47 ~~VLDlGcGtG~~a~~La~~g~-----~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~ 121 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALERGA-----SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLIN 121 (261)
T ss_dssp CEEEEECTTCHHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGG
T ss_pred CEEEEEeCcchHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhH
Confidence 4799999999999999987433 34555554 45555444321 0122333221 1 12246899999998887
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
++. .-....+|-+|-|+| |||.++++
T Consensus 122 ~~~----~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 122 RFT----TEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp GSC----HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred hCC----HHHHHHHHHHHHHhC-cCcEEEEE
Confidence 653 123556899999999 99999997
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0003 Score=69.14 Aligned_cols=130 Identities=16% Similarity=0.265 Sum_probs=70.3
Q ss_pred eEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHh----cc-cccccccccccC--CCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMIL----DR-GFVGVLHDWCEA--FPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~----~R-Glig~~~~~c~~--f~typ~tyDl~H~~ 586 (667)
.+|||+|||.|.++.+|.+. ...|..+-+.| ..+..+. ++ ++--+..|..+. +...+.+||+|.++
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~----~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP----RVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH----HHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCH----HHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 37999999999999999863 12343333322 1111111 11 222223343331 22335689999975
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcC---------HH-H-HHHHHHHHhhCCCeeEEe-eeccCC-Ccc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT---------AR-L-IESARALTTRLKWDARVI-EIESNS-DER 653 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~---------~~-~-~~~~~~~~~~~~W~~~~~-~~~~~~-~~~ 653 (667)
.... -....++-++-|+|+|||++++.-. .. + -++++.+.+. ++.... +.+... +.-
T Consensus 151 ~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--f~~~~~~~~~~~~~~~~ 220 (227)
T 1g8a_A 151 VAQP--------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEY--FEVIERLNLEPYEKDHA 220 (227)
T ss_dssp CCST--------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTT--SEEEEEEECTTTSSSEE
T ss_pred CCCH--------hHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhh--ceeeeEeccCcccCCCE
Confidence 4311 1112458899999999999998411 11 1 2456666333 775433 222222 344
Q ss_pred EEEEEcc
Q 005959 654 LLICQKP 660 (667)
Q Consensus 654 ~li~~K~ 660 (667)
+++++|+
T Consensus 221 ~~~~~~~ 227 (227)
T 1g8a_A 221 LFVVRKT 227 (227)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 6777763
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=8.9e-05 Score=79.12 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=63.0
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhc-ccccccccccccCCCCCCCccccccccCcccccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD-RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~-RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
....|||+|||.|.++.+|.+....+-+ +-.|-+..+..+-+ .++--+.+|..+++| . ||+|.+..++..+.
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~---~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~---~-~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKG---INFDLPQVIENAPPLSGIEHVGGDMFASVP---Q-GDAMILKAVCHNWS 281 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECHHHHTTCCCCTTEEEEECCTTTCCC---C-EEEEEEESSGGGSC
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeE---EEeChHHHHHhhhhcCCCEEEeCCcccCCC---C-CCEEEEecccccCC
Confidence 4578999999999999999874323322 22222211211111 123333455555544 4 99999999998775
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
. . ....+|-++-|+|+|||.++|.|
T Consensus 282 d--~--~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 282 D--E--KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp H--H--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred H--H--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 1 12368999999999999999863
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=8.1e-05 Score=74.29 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=53.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cch-hh---Hh----cccccc--cccccccCCCC-CCCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL-PM---IL----DRGFVG--VLHDWCEAFPT-YPRTYDLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l-~~---~~----~RGlig--~~~~~c~~f~t-yp~tyDl~H 584 (667)
..|||+|||.|.++.+|...... .+|+-+|-. .++ .+ +- +.|+-. ....=.+.+|. +...+|.++
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~---~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQN---TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTT---EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 57999999999999999842222 234445544 443 22 22 345422 11111233332 113445554
Q ss_pred ccCccccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 585 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 585 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
+...+..... ..+-....+|-|+-|+|||||.+++
T Consensus 103 ~~~~~~~~~~-~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 103 ILFPWGTLLE-YVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EESCCHHHHH-HHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EeCCCcHHhh-hhhcchHHHHHHHHHhcCCCcEEEE
Confidence 4322111000 0112234688999999999999999
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.15 E-value=5.3e-05 Score=71.37 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=59.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc----ccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli----g~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++.+|.+. +. -+|+-+|-. ..+..+-+ .|+- =+..|+.+.++..+..||+|.++.
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~--~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSR--GM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHT--TC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CeEEEeCCCCCHHHHHHHHc--CC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 47999999999999999873 22 234555543 33433322 2331 123445443444457799999976
Q ss_pred ccccccCCCCCCCcchhheecc--ccccCCcEEEEEcC
Q 005959 588 LLSLESGHRHRCSTLDIFTEID--RILRPEGWVIIRDT 623 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~d--RiLRP~G~~i~~d~ 623 (667)
.|... ....++-++- |+|+|||.+++...
T Consensus 109 ~~~~~-------~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 109 PYAKE-------TIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp SSHHH-------HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCcc-------hHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 65321 1223444554 99999999999643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00033 Score=69.77 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=67.5
Q ss_pred eEEEeccccchhhhhhhhhc-CCCeEEEEeecCCCC-CchhhHhcc-----cc---cccccccccC-CCCCCCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR-----GF---VGVLHDWCEA-FPTYPRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~~~~R-----Gl---ig~~~~~c~~-f~typ~tyDl~H~ 585 (667)
.+|||+|||.|.++.+|.+. .... +|+-+|-. ..+..+-++ |. --+..|..+. |+. .+||+|.+
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~--~~~D~v~~ 172 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE--AAYDGVAL 172 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT--TCEEEEEE
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC--CCcCEEEE
Confidence 48999999999999999873 1011 33444433 444444433 42 1123344443 432 68999987
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH-HHHHHHHHHHhhCCCe
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWD 640 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-~~~~~~~~~~~~~~W~ 640 (667)
+ . -....+|-++-|+|+|||.+++.... +.+.++.+.++...|.
T Consensus 173 ~-----~------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 173 D-----L------MEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp E-----S------SCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred C-----C------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 2 1 12236889999999999999987654 3566666656555555
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.12 E-value=8.1e-05 Score=74.14 Aligned_cols=130 Identities=12% Similarity=0.185 Sum_probs=74.6
Q ss_pred eEEEeccccchhhhhhhhhcCC-CeEEEEeecCCCC-CchhhHhcc----cccc---c-cc----------------ccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILDR----GFVG---V-LH----------------DWC 570 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~-~vwvmnv~p~~~~-~~l~~~~~R----Glig---~-~~----------------~~c 570 (667)
.+|||+|||.|.++..|.+.-. .. +|+-+|-. ..+..+-++ |+-. + .. .|-
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDG---KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 4799999999999999986310 11 23333332 333333222 3311 1 11 132
Q ss_pred cCCCCCC-CccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC------------HHHHHHHHH----H
Q 005959 571 EAFPTYP-RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARA----L 633 (667)
Q Consensus 571 ~~f~typ-~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~~----~ 633 (667)
..|+. + .+||+|.++..... ...++-++-|+|||||.+++.+- ......++. +
T Consensus 139 ~~f~~-~~~~fD~I~~~~~~~~---------~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T 2hnk_A 139 SDFAF-GPSSIDLFFLDADKEN---------YPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELV 208 (239)
T ss_dssp TTTCC-STTCEEEEEECSCGGG---------HHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHH
T ss_pred ccccC-CCCCcCEEEEeCCHHH---------HHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHH
Confidence 33332 2 67999988644332 23678889999999999999651 122333333 4
Q ss_pred HhhCCCeeEEeeeccCCCccEEEEEccccc
Q 005959 634 TTRLKWDARVIEIESNSDERLLICQKPFFK 663 (667)
Q Consensus 634 ~~~~~W~~~~~~~~~~~~~~~li~~K~~~~ 663 (667)
...-.+++..... .+.+.+++|..-.
T Consensus 209 ~~~~~~~~~~~p~----~~g~~~~~~~~~~ 234 (239)
T 2hnk_A 209 YNDSLVDVSLVPI----ADGVSLVRKRLEH 234 (239)
T ss_dssp HHCTTEEEEEECS----TTCEEEEEECCCC
T ss_pred hhCCCeEEEEEEc----CCceEeeeehhhc
Confidence 4444566665532 2568889887654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00013 Score=70.75 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=58.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--cc-cccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VG-VLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig-~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ |+ +- +..|..+.++. ..+||+|.++..
T Consensus 79 ~~vLdiG~G~G~~~~~la~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~~~~ 152 (210)
T 3lbf_A 79 SRVLEIGTGSGYQTAILAHLVQ-----HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA-RAPFDAIIVTAA 152 (210)
T ss_dssp CEEEEECCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEESSB
T ss_pred CEEEEEcCCCCHHHHHHHHhCC-----EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc-CCCccEEEEccc
Confidence 4799999999999999987432 33444443 444444332 33 11 22344343222 478999999877
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
+.... =++-|+|+|||++++.-..
T Consensus 153 ~~~~~------------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIP------------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCC------------THHHHTEEEEEEEEEEECS
T ss_pred hhhhh------------HHHHHhcccCcEEEEEEcC
Confidence 76544 1578999999999996443
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00024 Score=67.74 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=54.0
Q ss_pred eEEEeccccchhhhhhhhhcC-----------CCeEEEEeecCCCCCchhhHhccccccccccccc---------CCCCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKG-----------KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE---------AFPTY 576 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~-----------~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~---------~f~ty 576 (667)
.+|||+|||.|.++.+|.+.- ..|..+-+.|......+.++ . -.|... .++
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~-~------~~d~~~~~~~~~~~~~~~-- 94 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL-C------PADVTDPRTSQRILEVLP-- 94 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEE-C------SCCTTSHHHHHHHHHHSG--
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEE-E------eccCCCHHHHHHHHHhcC--
Confidence 489999999999999998741 22444444332111111111 0 111111 122
Q ss_pred CCccccccccCcccccc----C-CCCCCCcchhheeccccccCCcEEEEEc
Q 005959 577 PRTYDLVHAEGLLSLES----G-HRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 577 p~tyDl~H~~~~~~~~~----~-~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
..+||+|-++..+.... . .........++-|+-|+|||||.+++.+
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 25899999865433210 0 0000011357889999999999999973
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00012 Score=74.05 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=56.0
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccc---cccc-cccccCCCCC------CCcc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF---VGVL-HDWCEAFPTY------PRTY 580 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGl---ig~~-~~~c~~f~ty------p~ty 580 (667)
-++|||+|||.|.++..|.+.-.+- -.|+-.|-. ..+.++- +.|+ |-++ .|..+..+.. +.+|
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPED--GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTT--CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3589999999999999887631100 123333332 2232222 2344 1121 2333322322 4789
Q ss_pred ccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 581 DLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 581 Dl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
|+|.++.... ....++-++-|+|||||.+++.+
T Consensus 158 D~V~~d~~~~---------~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDADKD---------NYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSCST---------THHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCchH---------HHHHHHHHHHHhCCCCeEEEEec
Confidence 9998854322 23467778889999999999854
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0003 Score=74.55 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=57.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHh----cccc---cccccccccCCCCCC-CccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGF---VGVLHDWCEAFPTYP-RTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~----~RGl---ig~~~~~c~~f~typ-~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..+.+.+. . .|+-+|....+..+- +.|+ |-+++.=.+.++ +| .+||+|-+..+
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~-~---~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGA-K---KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWM 140 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-S---EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCC
T ss_pred CEEEEeeccCcHHHHHHHHcCC-C---EEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhc-CCCCcEEEEEEcCc
Confidence 4799999999999998887321 1 223333322233222 2343 222322222333 34 78999998764
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVI 619 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i 619 (667)
..... ..-.+..+|-++.|+|+|||.+|
T Consensus 141 ~~~l~---~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 141 GYFLL---FESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTBT---TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhcc---CHHHHHHHHHHHHhhcCCCcEEE
Confidence 32222 22345568899999999999998
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00011 Score=73.58 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=56.2
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccccc---c-ccccccCCCCC------CCcc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVG---V-LHDWCEAFPTY------PRTY 580 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGlig---~-~~~~c~~f~ty------p~ty 580 (667)
-++|||+|||.|..+.+|.+.-.+- -.|+-.|-. ..+.++- +.|+-. + ..|..+.++.. +.+|
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDD--GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 4689999999999999887630000 122333332 2333222 235411 1 22333333322 4789
Q ss_pred ccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 581 DLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 581 Dl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
|+|.++.--. ....++-++-|+|||||++++.+
T Consensus 149 D~I~~d~~~~---------~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDADKP---------NYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSCGG---------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCchH---------HHHHHHHHHHHhcCCCeEEEEec
Confidence 9998864322 23467778889999999999864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=7.1e-05 Score=73.50 Aligned_cols=127 Identities=15% Similarity=0.121 Sum_probs=71.0
Q ss_pred eEEEeccccchhhhhhhhhcCC-CeEEEEeecCCCC-CchhhHhc----ccc---cccc-cccccCCCCCC-----Cccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD----RGF---VGVL-HDWCEAFPTYP-----RTYD 581 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~-~vwvmnv~p~~~~-~~l~~~~~----RGl---ig~~-~~~c~~f~typ-----~tyD 581 (667)
++|||+|||.|.++.+|.+.-. .. .|+-+|-. ..+..+-+ .|+ +-++ .|..+.++..+ .+||
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADG---RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 5899999999999999986211 11 23333332 33333322 243 1111 12222222222 6799
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC------------HHHHHHHHHH----HhhCCCeeEEee
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARAL----TTRLKWDARVIE 645 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~~~----~~~~~W~~~~~~ 645 (667)
+|.++... .....++-++-|+|||||.+++.+. ......++++ ...=++++....
T Consensus 148 ~v~~d~~~---------~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 218 (229)
T 2avd_A 148 VAVVDADK---------ENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP 218 (229)
T ss_dssp EEEECSCS---------TTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred EEEECCCH---------HHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEe
Confidence 99985432 2234678888899999999999532 2233344443 333445555543
Q ss_pred eccCCCccEEEEEc
Q 005959 646 IESNSDERLLICQK 659 (667)
Q Consensus 646 ~~~~~~~~~li~~K 659 (667)
. .+.++|++|
T Consensus 219 ~----~dGl~~~~k 228 (229)
T 2avd_A 219 L----GDGLTLAFK 228 (229)
T ss_dssp S----TTCEEEEEE
T ss_pred c----CCceEEEEE
Confidence 2 357888877
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00033 Score=74.30 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=59.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhc----ccc---cccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~----RGl---ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.+|||+|||.|.++..+.+.+. . .|+-+|....+..+-+ .|+ |-+++.=-+.++ .|..||+|-+..++
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g~-~---~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~~D~Ivs~~~~ 126 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAGA-R---KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LPEQVDIIISEPMG 126 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-S---EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEEEEEECCCB
T ss_pred CEEEEcCCCccHHHHHHHhCCC-C---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCC-CCCceeEEEEeCch
Confidence 4899999999999998886321 1 2222332223333322 244 222222122222 35789999998887
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.++. .-.+...+.++-|+|+|||.+++.
T Consensus 127 ~~~~----~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 127 YMLF----NERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TTBT----TTSHHHHHHHGGGGEEEEEEEESC
T ss_pred hcCC----hHHHHHHHHHHHhhcCCCeEEEEe
Confidence 6654 133556778999999999999853
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00047 Score=68.18 Aligned_cols=105 Identities=11% Similarity=0.052 Sum_probs=68.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc----cccccccccCC-CCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF----VGVLHDWCEAF-PTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl----ig~~~~~c~~f-~typ~tyDl~H~~ 586 (667)
.+|||+|||.|.++.+|.+. ..+|+-+|-. ..+..+-++ |+ --+..|..+.+ + +.+||+|-++
T Consensus 93 ~~vldiG~G~G~~~~~l~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~ 165 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEV-----AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP--EGIFHAAFVD 165 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHH-----SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC--TTCBSEEEEC
T ss_pred CEEEEeCCCccHHHHHHHHh-----CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC--CCcccEEEEC
Confidence 37999999999999999873 2355556654 555555443 33 12234555544 3 2689999872
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCe
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWD 640 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~ 640 (667)
- -....++-++-|+|+|||.+++... .+.+.++...++.. |.
T Consensus 166 ~-----------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 166 V-----------REPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp S-----------SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred C-----------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 1 1233678889999999999999766 45666666655554 44
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00028 Score=75.47 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=63.2
Q ss_pred CCceeEEEeccccchhhhhhhhhcCCC--eEEEEeecCCCCCchhhHhcc-cccccccccccCCCCCCCccccccccCcc
Q 005959 513 YNMVRNVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 513 ~~~~R~vlDm~~~~g~faa~l~~~~~~--vwvmnv~p~~~~~~l~~~~~R-Glig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
+...+.|||+|||.|.++.+|.+.... +.+.-+ +..+..+-++ ++-=+-+|.-+++| .. |+|.+..++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~~~~~p---~~-D~v~~~~vl 271 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-----PHVIQDAPAFSGVEHLGGDMFDGVP---KG-DAIFIKWIC 271 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HHHHTTCCCCTTEEEEECCTTTCCC---CC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-----HHHHHhhhhcCCCEEEecCCCCCCC---CC-CEEEEechh
Confidence 345789999999999999999873212 222222 1111111111 23223455555555 34 999999999
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
..|.. . ....+|-++=|.|+|||.++|.|
T Consensus 272 h~~~~--~--~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 272 HDWSD--E--HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp GGBCH--H--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hcCCH--H--HHHHHHHHHHHHcCCCCEEEEEE
Confidence 88862 1 23368999999999999999964
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00048 Score=70.22 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=69.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-----cc---cccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GF---VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-----Gl---ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|+++..|.+.-.+- ..|+-+|-. ..+..+-++ |+ --+..|..++++. .+||+|-++
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~--~~fD~Vi~~- 186 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALNGK--GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD--QMYDAVIAD- 186 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTS--SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS--CCEEEEEEC-
T ss_pred CEEEEecCCCCHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC--CCccEEEEc-
Confidence 489999999999999998630011 133444443 444444333 42 1123455555543 689999872
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcCHH-HHHHHHHHHhhCCCee
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR-LIESARALTTRLKWDA 641 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~-~~~~~~~~~~~~~W~~ 641 (667)
. -....+|-++-|+|+|||.+++.+... ..+++.+.+....|..
T Consensus 187 ~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~ 231 (275)
T 1yb2_A 187 I----------PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 231 (275)
T ss_dssp C----------SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred C----------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 1 122468889999999999999976543 5666666666555553
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00075 Score=69.73 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=56.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCC--C-Cchhh-Hhccccccc--ccccccCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG--T-NHLPM-ILDRGFVGV--LHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~--~-~~l~~-~~~RGlig~--~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
..|||+|||.|+|+..|.+. ..|.-+-+.|.-. . +.+.. .+.-++.-+ -.|- +.++ +.+||+|-|+..+.
T Consensus 84 ~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~-~~l~--~~~fD~Vvsd~~~~ 159 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQ-PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDV-TKME--PFQADTVLCDIGES 159 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTS-TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCG-GGCC--CCCCSEEEECCCCC
T ss_pred CEEEEeccCCCHHHHHHHHc-CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcH-hhCC--CCCcCEEEECCCcC
Confidence 58999999999999999874 5677666666310 0 10000 000011111 1222 2244 58999999875521
Q ss_pred cccCCCCCCCcchhheeccccccCCc--EEEEE
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEG--WVIIR 621 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G--~~i~~ 621 (667)
.-....+.-....+|-++.|+|+||| .|++.
T Consensus 160 ~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 160 NPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 10000000000126778999999999 99885
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0014 Score=70.75 Aligned_cols=102 Identities=13% Similarity=0.038 Sum_probs=70.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-------------CceEEeecccCC----CCCC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------------PAMIGSFASKQL----PYPS 315 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-------------~~~~~~~da~~L----pfpd 315 (667)
++++||=||.|.|..++.+++.. ...|+.+|+++.+++.|++--. .+.+...|+... .-..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~--~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLK--PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTC--CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhcC--CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 46899999999999999999874 3679999999999999987421 123444443221 1134
Q ss_pred CCccEEEecccccccccC---------HHHHHHHHHhcccCCeEEEEEeC
Q 005959 316 LSFDMLHCARCGVDWDQK---------DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~~d---------~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.||+|+.-..-.....+ ...+++.++++|+|||+++...-
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 689999975221110111 13578889999999999998643
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00021 Score=70.02 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=54.3
Q ss_pred eEEEeccccchhhhhhhhhc-CCCeEEEEeecCCCC-CchhhHhcc----c--------ccccccccccCCCCCCCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----G--------FVGVLHDWCEAFPTYPRTYDL 582 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~~~~R----G--------lig~~~~~c~~f~typ~tyDl 582 (667)
..|||+|||.|.+++.|.+. +... +|+-+|-. ..+..+-++ | +--+..|..+.++ -+.+||+
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 154 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTG---KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA 154 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCE
Confidence 37999999999999998863 1111 23333433 333333221 1 2122334443322 1368999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
|+++..+. .++-++-|+|+|||.+++.-
T Consensus 155 i~~~~~~~------------~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 155 IHVGAAAP------------VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EEECSBBS------------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEECCchH------------HHHHHHHHhcCCCcEEEEEE
Confidence 99866542 35567889999999999964
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00028 Score=68.63 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=59.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc----ccc-ccccccCCCCC-CCc-ccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF----VGV-LHDWCEAFPTY-PRT-YDLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl----ig~-~~~~c~~f~ty-p~t-yDl~H 584 (667)
..|||+|||.|.|+..++... . -.|+-+|-. ..+..+-+ .|+ +-+ ..|..+..+.. +.+ ||+|-
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~--~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQ--A--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTT--C--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CeEEEcCCccCHHHHHHHHcc--C--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 379999999999999876532 1 134555554 44443333 233 111 22333322322 468 99999
Q ss_pred ccCccccccCCCCCCCcchhheec--cccccCCcEEEEEcCHH
Q 005959 585 AEGLLSLESGHRHRCSTLDIFTEI--DRILRPEGWVIIRDTAR 625 (667)
Q Consensus 585 ~~~~~~~~~~~~~~c~~~~~l~E~--dRiLRP~G~~i~~d~~~ 625 (667)
++..|.. -....++-++ -|+|+|||.+++.....
T Consensus 131 ~~~~~~~-------~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 131 LDPPFHF-------NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp ECCCSSS-------CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred ECCCCCC-------ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8766531 1234566677 78999999999975543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00048 Score=71.17 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=80.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cc-cccccccCCCCCCCcc---cccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTY---DLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~c~~f~typ~ty---Dl~H 584 (667)
.+|||+|||.|.++.+|... +- .+|+-+|-. ..+.++-+ .|+ +- +..||.++++ .+| |+|-
T Consensus 125 ~~vLDlG~GsG~~~~~la~~--~~--~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~---~~f~~~D~Iv 197 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKF--SD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---EKFASIEMIL 197 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHH--SS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---GGTTTCCEEE
T ss_pred CEEEEEeCchhHHHHHHHHC--CC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc---cccCCCCEEE
Confidence 36999999999999999873 21 134444543 44444433 244 22 3456666553 578 9998
Q ss_pred ccCccccccC--------C-----CCCCCcchhheecc-ccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeeccCC
Q 005959 585 AEGLLSLESG--------H-----RHRCSTLDIFTEID-RILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS 650 (667)
Q Consensus 585 ~~~~~~~~~~--------~-----~~~c~~~~~l~E~d-RiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 650 (667)
++--+..... . -..++-..++-++= +.|+|||++++.-..+.-+.+.++.+.. .++ .+-.+
T Consensus 198 snPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~----~~~-~D~~g 272 (284)
T 1nv8_A 198 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT----VFL-KDSAG 272 (284)
T ss_dssp ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC----EEE-ECTTS
T ss_pred EcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC----Cee-cccCC
Confidence 8633222110 0 01122236777888 9999999999975555566677766654 222 23445
Q ss_pred CccEEEEEcc
Q 005959 651 DERLLICQKP 660 (667)
Q Consensus 651 ~~~~li~~K~ 660 (667)
.++++++.++
T Consensus 273 ~~R~~~~~~k 282 (284)
T 1nv8_A 273 KYRFLLLNRR 282 (284)
T ss_dssp SEEEEEEECC
T ss_pred CceEEEEEEc
Confidence 6888887664
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00032 Score=70.61 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=56.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc--cccccccccCCCCCCCccccccccCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
.+|||+|||.|.++..|.+.-... +|+-+|-. ..+..+-+++- .=+..|.. .++.-+.+||+|.+...
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~----- 157 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RLPFSDTSMDAIIRIYA----- 157 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-SCSBCTTCEEEEEEESC-----
T ss_pred CEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcchh-hCCCCCCceeEEEEeCC-----
Confidence 479999999999999998731011 33444444 55555655541 11122222 23322378999998432
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
...+-|+-|+|||||.+++.+
T Consensus 158 --------~~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 158 --------PCKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp --------CCCHHHHHHHEEEEEEEEEEE
T ss_pred --------hhhHHHHHHhcCCCcEEEEEE
Confidence 136789999999999999864
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0006 Score=66.42 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=67.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH--------hcccc--cccccccccCCCCCCCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI--------LDRGF--VGVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~--------~~RGl--ig~~~~~c~~f~typ~tyDl~H~ 585 (667)
..|||+|||.|.++.+|.+..... +|+-+|-. ..|..+ ..+|+ +-+.+.=.+.++.-+.+ |.++.
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSR---LVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTE---EEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CEEEEecCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 579999999999999998741122 34444443 333321 13443 11222112224432345 76662
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEc------------------CHH-HHHHHHHHHhhCCCeeEEe
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD------------------TAR-LIESARALTTRLKWDARVI 644 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d------------------~~~-~~~~~~~~~~~~~W~~~~~ 644 (667)
.-.+..... .+.-+...+|-|+-|+|||||.+++.- ... .-+.++.+...--|++...
T Consensus 105 ~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~ 181 (218)
T 3mq2_A 105 LMPWGSLLR-GVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADC 181 (218)
T ss_dssp ESCCHHHHH-HHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred Eccchhhhh-hhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceee
Confidence 211111000 000111578999999999999999852 112 2344777888888876654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0013 Score=66.84 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=70.2
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc----cccccccccCCCCCCCccccccccCc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF----VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl----ig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
+|||+|||.|.++.+|++.-.+- .+|+-+|-. ..+..+-++ |+ --+..|..+.++. .+||+|-++-
T Consensus 115 ~VLDiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~V~~~~- 189 (277)
T 1o54_A 115 RIIDTGVGSGAMCAVLARAVGSS--GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--KDVDALFLDV- 189 (277)
T ss_dssp EEEEECCTTSHHHHHHHHHTTTT--CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC--CSEEEEEECC-
T ss_pred EEEEECCcCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC--CccCEEEECC-
Confidence 79999999999999998630111 144455543 445444443 43 2233455555443 6899998721
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCee
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDA 641 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~ 641 (667)
-....+|-++-|+|+|||.+++... .+.+.++.+.++...|..
T Consensus 190 ----------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~ 233 (277)
T 1o54_A 190 ----------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 233 (277)
T ss_dssp ----------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred ----------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 1123578889999999999999765 446666666666666653
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00053 Score=69.22 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=54.6
Q ss_pred eEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhcc-cccccccccccCC--CCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~R-Glig~~~~~c~~f--~typ~tyDl~H~~~~~~ 590 (667)
-.|||+|||.|++++.|.+. +-.|..+-+.|.-...-+..+-+| .+.-+..|=..+. ...+.+||+|.++..+
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~- 156 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ- 156 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC-
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC-
Confidence 47999999999999988752 113444333222100112223333 3444455544432 1224689999886433
Q ss_pred cccCCCCCCCcchhhe-eccccccCCcEEEEE
Q 005959 591 LESGHRHRCSTLDIFT-EIDRILRPEGWVIIR 621 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~-E~dRiLRP~G~~i~~ 621 (667)
.....+|+ .+.|+|+|||.+++.
T Consensus 157 --------~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 157 --------PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp --------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 22223444 456799999999985
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0062 Score=63.23 Aligned_cols=100 Identities=12% Similarity=0.028 Sum_probs=66.1
Q ss_pred CCEEEEeCCCCchHHHHHhhc----CCceeEEEEecCCHH--------------------------HHHHHH----HcCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGS--------------------------QVQLTL----ERGL 299 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~----g~~~~sV~gvD~S~~--------------------------ml~~A~----ergl 299 (667)
+..|||+|+..|..+..|++. +.....|+++|..+. .++.++ +.|+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 479999999999988887643 112345777774310 122232 2344
Q ss_pred ---CceEEeecccC-CC-CCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 300 ---PAMIGSFASKQ-LP-YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 300 ---~~~~~~~da~~-Lp-fpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+.+..+++.. +| +++++||+|+.-.- ........|..+.+.|+|||++++.+.
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 35667666533 44 44578999997632 112235789999999999999999886
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.011 Score=61.59 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH---HHHcCCC-ceEEee-cccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL---TLERGLP-AMIGSF-ASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~---A~ergl~-~~~~~~-da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+||||||++|.++.+.+... .+..|.++|+...--+. .++.+-+ +.+... |+..++- ..+|+|+|-..
T Consensus 95 ~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig-- 169 (321)
T 3lkz_A 95 VGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG-- 169 (321)
T ss_dssp CEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCC--
T ss_pred CCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEECc--
Confidence 3699999999999999887763 35579999987541100 0011111 334433 5555544 56999999754
Q ss_pred ccccCH----H---HHHHHHHhcccCC-eEEEEEeCCCCh
Q 005959 329 DWDQKD----G---ILLLEVDRVLKPG-GYFVWTSPLTNP 360 (667)
Q Consensus 329 ~~~~d~----~---~~L~Ei~RvLKPG-G~Lvis~p~~~~ 360 (667)
.-.+++ . ++|.-+.+.|++| |-|++-.+.+..
T Consensus 170 eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~ 209 (321)
T 3lkz_A 170 ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYM 209 (321)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTS
T ss_pred cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCC
Confidence 222232 1 2566667889999 999998887754
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00039 Score=74.28 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=63.2
Q ss_pred CceeEEEeccccchhhhhhhhhcCC--CeEEEEeecCCCCCchhhHhcc-cccccccccccCCCCCCCccccccccCccc
Q 005959 514 NMVRNVLDMNAHFGGFNSALLEKGK--SVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 514 ~~~R~vlDm~~~~g~faa~l~~~~~--~vwvmnv~p~~~~~~l~~~~~R-Glig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.....|||+|||.|.++.+|++... .+.+.-+ +..+..+-++ ++-=+-+|..+++| .. |+|.+..++.
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~p---~~-D~v~~~~vlh 270 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-----PHVISEAPQFPGVTHVGGDMFKEVP---SG-DTILMKWILH 270 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HHHHTTCCCCTTEEEEECCTTTCCC---CC-SEEEEESCGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-----HHHHHhhhhcCCeEEEeCCcCCCCC---CC-CEEEehHHhc
Confidence 4578999999999999999987321 2333222 2112111111 23233455555555 33 9999999998
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.|.. -....+|-++=|.|+|||+++|.|
T Consensus 271 ~~~d----~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 271 DWSD----QHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp GSCH----HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCCH----HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 8852 123468999999999999999964
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00023 Score=69.08 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=57.1
Q ss_pred eEEEeccccchhhhhhhhhcCCC-eEEEEeecCCCC-CchhhHhcc----cc--c-ccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILDR----GF--V-GVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~-vwvmnv~p~~~~-~~l~~~~~R----Gl--i-g~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.+++.|.+...+ . +|+-+|-. ..+..+-++ |+ + -...|..+.++. +.+||+|.+..
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~ 154 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDG---LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP-LAPYDRIYTTA 154 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG-GCCEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC-CCCeeEEEECC
Confidence 38999999999999999863211 1 23333433 444444333 32 1 122333344431 36899999987
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
.+.... -++-|+|+|||.+++.-..
T Consensus 155 ~~~~~~------------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 155 AGPKIP------------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp BBSSCC------------HHHHHTEEEEEEEEEEESS
T ss_pred chHHHH------------HHHHHHcCCCcEEEEEECC
Confidence 766443 2788999999999987443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00036 Score=73.73 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=62.6
Q ss_pred ceeEEEeccccchhhhhhhhhcC--CCeEEEEeecCCCCCchhhHhc-ccccccccccccCCCCCCCccccccccCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLPMILD-RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~--~~vwvmnv~p~~~~~~l~~~~~-RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
...+|||+|||.|.++.+|.+.. ..+.+.-+ | ..+..+-+ .++-=+.+|..+++| . ||+|.+..++..
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~p---~-~D~v~~~~~lh~ 258 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P----QVVENLSGSNNLTYVGGDMFTSIP---N-ADAVLLKYILHN 258 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCBTTEEEEECCTTTCCC---C-CSEEEEESCGGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H----HHHhhcccCCCcEEEeccccCCCC---C-ccEEEeehhhcc
Confidence 45789999999999999998631 12333333 2 11111111 123223455555544 3 999999999988
Q ss_pred ccCCCCCCCcchhheeccccccC---CcEEEEEc
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRP---EGWVIIRD 622 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP---~G~~i~~d 622 (667)
+.. . ....+|-++-|+|+| ||+++|.|
T Consensus 259 ~~d--~--~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 259 WTD--K--DCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp SCH--H--HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CCH--H--HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 862 1 223689999999999 99999864
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00029 Score=74.48 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=60.6
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccccccccccCCCCCCCccccccccCccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
+|||+|||.|.++.+|.+..... +|+-+|.. .-+..+-+ .|+-..+ -+...++.-+.+||+|-++..|...
T Consensus 199 ~VLDlGcG~G~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~~~g 274 (343)
T 2pjd_A 199 KVLDVGCGAGVLSVAFARHSPKI---RLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPFHDG 274 (343)
T ss_dssp BCCBTTCTTSHHHHHHHHHCTTC---BCEEEESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCCCSS
T ss_pred eEEEecCccCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCcccC
Confidence 69999999999999998642111 33334433 33333322 2332111 1222222225899999999887631
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.. ...-....++-|+-|+|+|||.+++-.
T Consensus 275 ~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 275 MQ-TSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp SH-HHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cc-CCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 10 011234578999999999999999864
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.001 Score=68.12 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=65.7
Q ss_pred eEEEeccccchhhhhhhhhcCC--CeEEEEeecCCCCCchhhHhc----ccc---cccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGK--SVWVMNVVPTIGTNHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~--~vwvmnv~p~~~~~~l~~~~~----RGl---ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|+|+..|..... .|..+-+.| ..+..+-+ .|+ .-+..|..+ ++. +.+||+|-++.
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~----~av~~a~~n~~~n~l~~~~~~~~d~~~-~~~-~~~~D~Vi~d~ 194 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP----TAYHYLCENIKLNKLNNVIPILADNRD-VEL-KDVADRVIMGY 194 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH----HHHHHHHHHHHHTTCSSEEEEESCGGG-CCC-TTCEEEEEECC
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCEEEEECChHH-cCc-cCCceEEEECC
Confidence 4799999999999999986322 333333322 22222211 232 212223322 232 57899997754
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcCH------HHH-HHHHHHHhhCCCeeEE
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------RLI-ESARALTTRLKWDARV 643 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------~~~-~~~~~~~~~~~W~~~~ 643 (667)
.. ....++.++-|+|+|||.+++.+.. +.. +.++.+.+.+.+++..
T Consensus 195 p~----------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (272)
T 3a27_A 195 VH----------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLID 247 (272)
T ss_dssp CS----------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEEE
T ss_pred cc----------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeEE
Confidence 33 3446888889999999999997442 233 4455556656555543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0045 Score=66.43 Aligned_cols=107 Identities=16% Similarity=0.107 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-------CCceEEeecccCCC-CCCCCccE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-------LPAMIGSFASKQLP-YPSLSFDM 320 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-------l~~~~~~~da~~Lp-fpd~sFDl 320 (667)
++.+|||+-+|+|.=|.+|++.+ ....|+++|.++.-++..+++ + .++.+...|...++ ...+.||.
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~ 226 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR 226 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence 34899999999999999998875 345799999998876554432 2 24556666666554 34578999
Q ss_pred EEe----cc---cccc--------cccC--------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 321 LHC----AR---CGVD--------WDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 321 V~~----s~---~ll~--------~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
|++ +. ..+. +... ..++|....+.|||||+|+.++-....
T Consensus 227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 995 32 1111 1100 125788899999999999999876543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00031 Score=66.21 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=56.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cc-cccccccCCCCC---CCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTY---PRTYDLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~c~~f~ty---p~tyDl~H 584 (667)
.+|||+|||.|.++.++++. +. -+|+-+|-. ..+..+-+ .|+ +- +..|+.+..+.. +.+||+|-
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~--~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSR--GM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHT--TC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEeCCccCHHHHHHHHc--CC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 48999999999999988763 21 133444433 33332222 232 11 223444432211 36899999
Q ss_pred ccCccccccCCCCCCCcchhheec--cccccCCcEEEEEcC
Q 005959 585 AEGLLSLESGHRHRCSTLDIFTEI--DRILRPEGWVIIRDT 623 (667)
Q Consensus 585 ~~~~~~~~~~~~~~c~~~~~l~E~--dRiLRP~G~~i~~d~ 623 (667)
++..|... ....++-++ -|+|+|||++++...
T Consensus 122 ~~~~~~~~-------~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 122 LDPPYAKQ-------EIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp ECCCGGGC-------CHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ECCCCCch-------hHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 98775421 123344445 899999999999643
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00047 Score=69.04 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=62.2
Q ss_pred eEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCC-CchhhHhc----c---cc-------------------------
Q 005959 517 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----R---GF------------------------- 562 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~~~~----R---Gl------------------------- 562 (667)
..|||+|||.|.|+..|.+.- .+ ..+|+-+|-. ..+..+-+ . |+
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~~--~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRRS--LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGG--EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHhccC--CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 579999999999999987620 01 2355555543 33333321 1 32
Q ss_pred ---cc--------------cccccccCCCC----CCCccccccccCccccccCCCC---CCCcchhheeccccccCCcEE
Q 005959 563 ---VG--------------VLHDWCEAFPT----YPRTYDLVHAEGLLSLESGHRH---RCSTLDIFTEIDRILRPEGWV 618 (667)
Q Consensus 563 ---ig--------------~~~~~c~~f~t----yp~tyDl~H~~~~~~~~~~~~~---~c~~~~~l~E~dRiLRP~G~~ 618 (667)
+- ..+|..++++. -..+||+|-|+-.|.......+ .-....++-++-|+|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 11 22455444320 1248999999766543320000 122336788899999999999
Q ss_pred EEEcCH
Q 005959 619 IIRDTA 624 (667)
Q Consensus 619 i~~d~~ 624 (667)
++.+..
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 996554
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00049 Score=67.78 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=53.8
Q ss_pred EEEeccccchhhhhhhhhcCCCe---EEEEeecCCCC-CchhhHhcc----c--------ccccccccccCCCCCCCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSV---WVMNVVPTIGT-NHLPMILDR----G--------FVGVLHDWCEAFPTYPRTYD 581 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~v---wvmnv~p~~~~-~~l~~~~~R----G--------lig~~~~~c~~f~typ~tyD 581 (667)
.|||+|||.|.+++.|.+.-... ..-.|+-+|-. ..+..+-++ | +-=+..|..+.++. ..+||
T Consensus 87 ~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD 165 (227)
T 1r18_A 87 RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-NAPYN 165 (227)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-GCSEE
T ss_pred EEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-CCCcc
Confidence 79999999999999987621100 00022333332 333333222 1 11123344444432 26899
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+|++...+. .++-++-|+|+|||.+++.-
T Consensus 166 ~I~~~~~~~------------~~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 166 AIHVGAAAP------------DTPTELINQLASGGRLIVPV 194 (227)
T ss_dssp EEEECSCBS------------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEEECCchH------------HHHHHHHHHhcCCCEEEEEE
Confidence 999865543 24467889999999999863
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00048 Score=72.93 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=62.1
Q ss_pred ceeEEEeccccchhhhhhhhhcCCC--eEEEEeecCCCCCchhhHhc-ccccccccccccCCCCCCCccccccccCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGTNHLPMILD-RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~--vwvmnv~p~~~~~~l~~~~~-RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
...+|||+|||.|.++.+|.+.... +.+.-+ | ..+..+-+ .++--+-+|..+++| .||+|.+..++..
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~~----~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P----QVVGNLTGNENLNFVGGDMFKSIP----SADAVLLKWVLHD 263 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H----HHHSSCCCCSSEEEEECCTTTCCC----CCSEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H----HHHhhcccCCCcEEEeCccCCCCC----CceEEEEcccccC
Confidence 3579999999999999999874222 232222 2 11111111 123233455555444 3999999999988
Q ss_pred ccCCCCCCCcchhheeccccccC---CcEEEEEc
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRP---EGWVIIRD 622 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP---~G~~i~~d 622 (667)
+.. ..| ..+|-++-|+|+| ||.++|-|
T Consensus 264 ~~d--~~~--~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 264 WND--EQS--LKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp SCH--HHH--HHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred CCH--HHH--HHHHHHHHHhCCCCCCCcEEEEEE
Confidence 762 222 3689999999999 99999853
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=68.05 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=61.9
Q ss_pred ceeEEEeccccc---hhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----c-ccccccccc------------cCC
Q 005959 515 MVRNVLDMNAHF---GGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G-FVGVLHDWC------------EAF 573 (667)
Q Consensus 515 ~~R~vlDm~~~~---g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----G-lig~~~~~c------------~~f 573 (667)
.++.|||+|||. |.+...+... .|= ..|+=+|-. ..|..+-++ + +-=+..|.. +.|
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~-~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSV-NPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHH-CTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHh-CCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC
Confidence 478999999999 9887665431 111 134444442 333333222 1 111112222 123
Q ss_pred CCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 574 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 574 ~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+. .+||+|-+..+|..+. +. ....+|-|+-|+|+|||++++.+
T Consensus 154 d~--~~~d~v~~~~vlh~~~---d~-~~~~~l~~~~~~L~pGG~l~i~~ 196 (274)
T 2qe6_A 154 DF--SRPAAIMLVGMLHYLS---PD-VVDRVVGAYRDALAPGSYLFMTS 196 (274)
T ss_dssp CT--TSCCEEEETTTGGGSC---TT-THHHHHHHHHHHSCTTCEEEEEE
T ss_pred CC--CCCEEEEEechhhhCC---cH-HHHHHHHHHHHhCCCCcEEEEEE
Confidence 32 4799999998888776 33 56789999999999999999975
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0015 Score=69.28 Aligned_cols=139 Identities=9% Similarity=0.034 Sum_probs=88.4
Q ss_pred CCCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhc---cc----ccccccccccCCCCCCCcccccc
Q 005959 512 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD---RG----FVGVLHDWCEAFPTYPRTYDLVH 584 (667)
Q Consensus 512 ~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~---RG----lig~~~~~c~~f~typ~tyDl~H 584 (667)
++...+.|+|+|||.|.++.+|++. .|=+. ++-.|-+..+..+-+ .+ +-=+-||.-+. -+..+|++.
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~-~p~~~--~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~---~~~~~D~~~ 249 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSL-YPGCK--ITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKD---PLPEADLYI 249 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHH-CSSCE--EEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTS---CCCCCSEEE
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHh-CCCce--eEeccCHHHHHHHHHhhhhcccCceeeecCccccC---CCCCceEEE
Confidence 4677899999999999999999974 44332 222333333332221 12 11123443221 123589999
Q ss_pred ccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH--------------------------HHHHHHHHHHhhCC
Q 005959 585 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA--------------------------RLIESARALTTRLK 638 (667)
Q Consensus 585 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~--------------------------~~~~~~~~~~~~~~ 638 (667)
+..++..|.. ..| ..||-++=|.|+|||.++|-|.. ...++.+++++.--
T Consensus 250 ~~~vlh~~~d--~~~--~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AG 325 (353)
T 4a6d_A 250 LARVLHDWAD--GKC--SHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAG 325 (353)
T ss_dssp EESSGGGSCH--HHH--HHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHT
T ss_pred eeeecccCCH--HHH--HHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCC
Confidence 9999998863 334 35899999999999999986531 11356677777777
Q ss_pred CeeEEeeeccCCCccEEEEEccc
Q 005959 639 WDARVIEIESNSDERLLICQKPF 661 (667)
Q Consensus 639 W~~~~~~~~~~~~~~~li~~K~~ 661 (667)
|+...+. ..++...+++++|.=
T Consensus 326 f~~v~v~-~~~~~~~~i~ArKgt 347 (353)
T 4a6d_A 326 FRDFQFK-KTGAIYDAILARKGT 347 (353)
T ss_dssp CEEEEEE-CCSSSCEEEEEECCC
T ss_pred CceEEEE-EcCCceEEEEEEecC
Confidence 8755442 234456789999863
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00069 Score=65.92 Aligned_cols=97 Identities=9% Similarity=0.013 Sum_probs=57.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cc-cccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig-~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..++... . -.|+-+|-. ..+..+-+ .|+ +- +..|..+..+.-+.+||+|-++..
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~--~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRY--A--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTT--C--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CeEEEeCCCcCHHHHHHHhcC--C--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 479999999999999876532 1 145555554 44443332 233 11 223333323333478999988766
Q ss_pred cccccCCCCCCCcchhheec--cccccCCcEEEEEcCH
Q 005959 589 LSLESGHRHRCSTLDIFTEI--DRILRPEGWVIIRDTA 624 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~--dRiLRP~G~~i~~d~~ 624 (667)
|.. -....++-++ -|+|+|||.+++....
T Consensus 132 ~~~-------~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 132 FRR-------GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SST-------TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCC-------CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 431 1223455555 4679999999997554
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0019 Score=63.74 Aligned_cols=130 Identities=14% Similarity=0.182 Sum_probs=68.5
Q ss_pred eEEEeccccchhhhhhhhhcC--CCeEEEEeecCCCCCchhhHhcc-----cccccccccccC---CCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLPMILDR-----GFVGVLHDWCEA---FPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~--~~vwvmnv~p~~~~~~l~~~~~R-----Glig~~~~~c~~---f~typ~tyDl~H~~ 586 (667)
.+|||+|||.|.++..|.+.- ..|..+-+.| ..+..+-++ .+.-+..|..++ ++ ++.+||+|..+
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~D~v~~~ 150 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAP----RIMRELLDACAERENIIPILGDANKPQEYAN-IVEKVDVIYED 150 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCH----HHHHHHHHHTTTCTTEEEEECCTTCGGGGTT-TSCCEEEEEEC
T ss_pred CEEEEEcccCCHHHHHHHHHcCCcEEEEEECCH----HHHHHHHHHhhcCCCeEEEECCCCCcccccc-cCccEEEEEEe
Confidence 479999999999999998731 2233333332 222211111 122222333321 22 23689998631
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEE----cCH------H-HHHHHHHHHhhCCCeeEEe-eeccC-CCcc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR----DTA------R-LIESARALTTRLKWDARVI-EIESN-SDER 653 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~----d~~------~-~~~~~~~~~~~~~W~~~~~-~~~~~-~~~~ 653 (667)
.. ..-....+|-++-|+|+|||++++. ... . .-++++ ++....++.... +.+.- .+.-
T Consensus 151 -----~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~ 221 (230)
T 1fbn_A 151 -----VA---QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHV 221 (230)
T ss_dssp -----CC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEE
T ss_pred -----cC---ChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceE
Confidence 11 1111245789999999999999993 211 1 124555 555555654433 22221 2345
Q ss_pred EEEEEcc
Q 005959 654 LLICQKP 660 (667)
Q Consensus 654 ~li~~K~ 660 (667)
+++++|+
T Consensus 222 ~v~~~k~ 228 (230)
T 1fbn_A 222 MFVGIWE 228 (230)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 6777763
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0022 Score=64.79 Aligned_cols=108 Identities=17% Similarity=0.234 Sum_probs=63.8
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-----c-cc----ccccccccC-CCCCCCccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----G-FV----GVLHDWCEA-FPTYPRTYDLVHA 585 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-----G-li----g~~~~~c~~-f~typ~tyDl~H~ 585 (667)
+|||+|||.|.++.+|...-.+- ..|+-+|-. ..+..+-++ | +. -+..|..+. ++ +.+||+|-+
T Consensus 102 ~vLdiG~G~G~~~~~l~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~--~~~~D~v~~ 177 (280)
T 1i9g_A 102 RVLEAGAGSGALTLSLLRAVGPA--GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP--DGSVDRAVL 177 (280)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC--TTCEEEEEE
T ss_pred EEEEEcccccHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC--CCceeEEEE
Confidence 79999999999999998620010 134444543 444444333 3 11 122344332 22 378999987
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhh-CCCe
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTR-LKWD 640 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~-~~W~ 640 (667)
+. - ....+|-++-|+|+|||++++... .+.+.++...... ..|.
T Consensus 178 ~~-~----------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 178 DM-L----------APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp ES-S----------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred CC-c----------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 21 1 223588999999999999998653 3444444443333 4553
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0085 Score=61.31 Aligned_cols=100 Identities=17% Similarity=0.171 Sum_probs=58.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhc-CCc--eeEEEEecCCHHHHHHHHH-cCCCc-eEEee-cccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK-ELL--TMCIANYEASGSQVQLTLE-RGLPA-MIGSF-ASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~-g~~--~~sV~gvD~S~~ml~~A~e-rgl~~-~~~~~-da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||+||++|.++.+.++. ++. ...+.++|.. +...... .|.++ .+.++ |...+ +...+|+|+|-.+
T Consensus 73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~--~~P~~~~~~Gv~~i~~~~G~Df~~~--~~~~~DvVLSDMA 148 (269)
T 2px2_A 73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGH--EEPMLMQSYGWNIVTMKSGVDVFYK--PSEISDTLLCDIG 148 (269)
T ss_dssp CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTS--CCCCCCCSTTGGGEEEECSCCGGGS--CCCCCSEEEECCC
T ss_pred CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccc--cCCCcccCCCceEEEeeccCCccCC--CCCCCCEEEeCCC
Confidence 3489999999999999999886 111 1223444521 0000000 12222 22334 66553 3558999999754
Q ss_pred ccccccC----HH---HHHHHHHhcccCCe-EEEEEeCCC
Q 005959 327 GVDWDQK----DG---ILLLEVDRVLKPGG-YFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d----~~---~~L~Ei~RvLKPGG-~Lvis~p~~ 358 (667)
-. ... .. .+|.-+.++|+||| .|++-.+..
T Consensus 149 -Pn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 149 -ES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp -CC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred -CC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 22 211 11 24655668999999 999988763
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0026 Score=66.35 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=70.3
Q ss_pred eEEEeccc------cchh-hhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccc-cccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNA------HFGG-FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVG-VLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~------~~g~-faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig-~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
..|||+|| |.|+ .+|.+...+..|.-+-+.|. + + ++-= +..|+.+. + ++.+||+|.++..
T Consensus 65 ~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-----v----~-~v~~~i~gD~~~~-~-~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-----V----S-DADSTLIGDCATV-H-TANKWDLIISDMY 132 (290)
T ss_dssp CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-----B----C-SSSEEEESCGGGC-C-CSSCEEEEEECCC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-----C----C-CCEEEEECccccC-C-ccCcccEEEEcCC
Confidence 36999999 4476 23333321123444444443 1 1 2222 45566542 2 2478999998643
Q ss_pred ccc---c--cCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCC-eeEEeeeccCCCccEEEEEc
Q 005959 589 LSL---E--SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKW-DARVIEIESNSDERLLICQK 659 (667)
Q Consensus 589 ~~~---~--~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W-~~~~~~~~~~~~~~~li~~K 659 (667)
... + ...+..-.+..+|-|+-|+|||||.|++..- ....+++.++++...+ .+...-....+.|-+++++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr~~s~e~~lv~~~ 210 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGAN 210 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGGTTSSCEEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcCCCchheEEecCC
Confidence 211 0 0000111123678899999999999998541 1223466667776644 44444222334577777764
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00063 Score=66.69 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=53.9
Q ss_pred eEEEeccccchhhhhhhhhcCC----CeEEEEeecCCCC-CchhhHhcc----cc-------c-ccccccccCCC---CC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGK----SVWVMNVVPTIGT-NHLPMILDR----GF-------V-GVLHDWCEAFP---TY 576 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~----~vwvmnv~p~~~~-~~l~~~~~R----Gl-------i-g~~~~~c~~f~---ty 576 (667)
.+|||+|||.|.+++.|.+... +-. +|+-+|-. ..+..+-++ |+ + -+..|..+.++ .-
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNS--YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTC--EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCC--EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 4899999999999999986322 100 23333332 333333322 31 1 12223333220 11
Q ss_pred CCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 577 PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 577 p~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.+||+|++...+. .++-++-|+|+|||.+++.-
T Consensus 160 ~~~fD~I~~~~~~~------------~~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 160 LGLFDAIHVGASAS------------ELPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HCCEEEEEECSBBS------------SCCHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCchH------------HHHHHHHHhcCCCcEEEEEE
Confidence 36799999865543 25567889999999999863
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.00059 Score=67.64 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=54.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccc---cccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG---VLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig---~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.+++.|.+.. + .+|+-+|-. ..+..+-++ |+-. +..|...+++. ...||+|.++..
T Consensus 93 ~~vLdiG~G~G~~~~~la~~~-~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 93 MNILEVGTGSGWNAALISEIV-K---TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP-KAPYDVIIVTAG 167 (235)
T ss_dssp CCEEEECCTTSHHHHHHHHHH-C---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEECSB
T ss_pred CEEEEEeCCcCHHHHHHHHHh-C---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC-CCCccEEEECCc
Confidence 479999999999999998732 1 133333432 333333332 3211 22333334432 124999998766
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
+.... -++-|+|+|||.+++.-.
T Consensus 168 ~~~~~------------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 168 APKIP------------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp BSSCC------------HHHHHTEEEEEEEEEEEC
T ss_pred HHHHH------------HHHHHhcCCCcEEEEEEe
Confidence 54332 367899999999998644
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0007 Score=70.68 Aligned_cols=93 Identities=16% Similarity=0.054 Sum_probs=57.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccc---cccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG---VLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig---~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
..|||+|||.|.++..|.+.... .-+|+-+|-. ..+..+-++ |+-. +..|..+..+ -+.+||+|.+...
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~ 153 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVGE--KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-EFSPYDVIFVTVG 153 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEECSB
T ss_pred CEEEEecCCchHHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-cCCCeEEEEEcCC
Confidence 37999999999999999863222 0013333333 455444443 5421 2234433222 2368999999877
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
+.... -++-|+|+|||.+++....
T Consensus 154 ~~~~~------------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 154 VDEVP------------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp BSCCC------------HHHHHHEEEEEEEEEEBCB
T ss_pred HHHHH------------HHHHHhcCCCcEEEEEECC
Confidence 75432 3677899999999997543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0037 Score=65.49 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=51.4
Q ss_pred eEEEeccccchhhhhhhhhc-CCCeEEEEeecCCCC-CchhhHhcc------------------cccccccccccCCCCC
Q 005959 517 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR------------------GFVGVLHDWCEAFPTY 576 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~~~~R------------------Glig~~~~~c~~f~ty 576 (667)
.+|||+|||.|.++.+|... +... .|+-+|-. ..+..+-++ .+-=+..|..+....+
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCc---eEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 47999999999999999863 1101 12222332 233333221 1111223444432223
Q ss_pred C-CccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 577 P-RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 577 p-~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
+ .+||+|.++. ... ..++-++-|+|+|||.+++...
T Consensus 184 ~~~~fD~V~~~~-~~~----------~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 184 KSLTFDAVALDM-LNP----------HVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ----EEEEEECS-SST----------TTTHHHHGGGEEEEEEEEEEES
T ss_pred CCCCeeEEEECC-CCH----------HHHHHHHHHhcCCCcEEEEEeC
Confidence 3 5899998732 111 2377889999999999998643
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0049 Score=59.21 Aligned_cols=116 Identities=9% Similarity=0.054 Sum_probs=70.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCCCccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
.+|||+|||.|.|+.+|...+.. +|+-+|-. ..+..+-++ |+ . ..-.+..+..+|.+||+|-++..|..
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~-~-~~~~~~d~~~~~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAK----EVICVEVDKEAVDVLIENLGEFKG-K-FKVFIGDVSEFNSRVDIVIMNPPFGS 124 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHTGGGTT-S-EEEEESCGGGCCCCCSEEEECCCCSS
T ss_pred CEEEEeeCCCCHHHHHHHHcCCC----EEEEEECCHHHHHHHHHHHHHcCC-C-EEEEECchHHcCCCCCEEEEcCCCcc
Confidence 47999999999999999873211 23444433 333333322 32 1 11112222224568999999887765
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhCCCeeEEe
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
.. . -....++-++-|+| ||.+++. ......+.+.+++....|++...
T Consensus 125 ~~---~-~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 125 QR---K-HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp SS---T-TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred cc---C-CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 54 2 12235666777777 6655554 36777788888888887876654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0018 Score=67.77 Aligned_cols=121 Identities=13% Similarity=0.042 Sum_probs=64.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--cccc-cccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig~~-~~~c~~f~typ~tyDl~H~~~~ 588 (667)
..|||+|||.|+++.+|.+.-.+- -.|+-.|-. ..+..+-++ |+ +-+. +|. +.++.++.+||+|-++--
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~--~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRND--GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS-LHIGELNVEFDKILLDAP 196 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG-GGGGGGCCCEEEEEEECC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh-hhcccccccCCEEEEeCC
Confidence 379999999999999998631110 124444544 444444333 44 1122 222 223334578999997533
Q ss_pred cccccCCCCC---------CC-------cchhheeccccccCCcEEEEEcC----HHHHHHHHHHHhhCCCe
Q 005959 589 LSLESGHRHR---------CS-------TLDIFTEIDRILRPEGWVIIRDT----ARLIESARALTTRLKWD 640 (667)
Q Consensus 589 ~~~~~~~~~~---------c~-------~~~~l~E~dRiLRP~G~~i~~d~----~~~~~~~~~~~~~~~W~ 640 (667)
.|....-++. .. -..+|-++-|+|+|||.+++..- .+.-+.++.+++...++
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~ 268 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 268 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence 2211000000 00 03678889999999999999521 22233445555554443
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0012 Score=73.44 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=58.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhh----Hhcccc---ccc-ccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGV-LHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~----~~~RGl---ig~-~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
..|||+|||.|.++..|.+. +. ..|+-+|....+.. +.+.|+ |-+ ..|+.+ + .+|..||+|-+..+
T Consensus 160 ~~VLDiGcGtG~la~~la~~--~~--~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~ 233 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQA--GA--RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPM 233 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHT--TC--SEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCC
T ss_pred CEEEEecCcccHHHHHHHHc--CC--CEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCc
Confidence 58999999999999988863 21 12233332222222 233354 222 233433 2 24578999999877
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
+..+. . -.+...+.++-|+|+|||++++
T Consensus 234 ~~~~~---~-e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 234 GYMLF---N-ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHHT---C-HHHHHHHHHGGGGEEEEEEEES
T ss_pred hHhcC---c-HHHHHHHHHHHHhcCCCCEEEE
Confidence 65543 1 2344677799999999999985
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.012 Score=61.14 Aligned_cols=55 Identities=7% Similarity=0.100 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e 296 (667)
.-+.+++.+.+...++ ..+||.+||.|..+..++++ ...|+|+|.++.+++.|++
T Consensus 8 pVLl~e~le~L~~~~g--------g~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 8 PVLYQEALDLLAVRPG--------GVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG 62 (285)
T ss_dssp CTTHHHHHHHHTCCTT--------CEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH
T ss_pred hHHHHHHHHhhCCCCC--------CEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh
Confidence 4455666677665444 79999999999999999997 3469999999999999876
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.004 Score=64.60 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=72.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc------cc----cc-cccccccCCCCCCCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF----VG-VLHDWCEAFPTYPRTYDLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R------Gl----ig-~~~~~c~~f~typ~tyDl~H 584 (667)
++|||+|||.|+++..|++. .++ .+|+-+|-. .-+.++-++ |+ +- +..|..+..+..+.+||+|-
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~-~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKH-DSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTS-TTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhc-CCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 68999999999999999862 232 233333332 222222211 11 11 12232222233357899999
Q ss_pred ccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC-----HHHHHHHHHHHhhCCCeeEEeeec----cCCCccEE
Q 005959 585 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEIE----SNSDERLL 655 (667)
Q Consensus 585 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~~----~~~~~~~l 655 (667)
++. +..+.+....-....++-++-|+|+|||.+++... .+....+.+..++.--.+...... .++...++
T Consensus 169 ~d~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~ 247 (296)
T 1inl_A 169 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYT 247 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEE
T ss_pred EcC-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEE
Confidence 753 22211000001124677889999999999999722 233444433333333333333211 12345678
Q ss_pred EEEccc
Q 005959 656 ICQKPF 661 (667)
Q Consensus 656 i~~K~~ 661 (667)
++.|.+
T Consensus 248 ~as~~~ 253 (296)
T 1inl_A 248 FASKGI 253 (296)
T ss_dssp EEESSC
T ss_pred EecCCC
Confidence 888863
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0018 Score=75.99 Aligned_cols=99 Identities=10% Similarity=0.130 Sum_probs=62.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----------ccc--cccccccccCCCCCCCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----------RGF--VGVLHDWCEAFPTYPRTYDLV 583 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----------RGl--ig~~~~~c~~f~typ~tyDl~ 583 (667)
..|||+|||.|.++.+|.+...+. -.|+-+|-. ..+..+-+ .|+ |-+++.=-+.++..+.+||+|
T Consensus 723 ~rVLDVGCGTG~lai~LAr~g~p~--a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 723 STLVDFGCGSGSLLDSLLDYPTSL--QTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp SEEEEETCSSSHHHHHHTSSCCCC--CEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 579999999999999998742111 133444443 44444433 243 222221123355545899999
Q ss_pred cccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 584 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.|..++.+.. + -....++-|+-|+|||| ++|+..
T Consensus 801 V~~eVLeHL~---d-p~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 801 TCLEVIEHME---E-DQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EEESCGGGSC---H-HHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EEeCchhhCC---h-HHHHHHHHHHHHHcCCC-EEEEEe
Confidence 9999988765 1 12234778999999999 777753
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0018 Score=66.37 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=57.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCC-C-CchhhHhc---------ccc-------c-ccccccccCCCCC-
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG-T-NHLPMILD---------RGF-------V-GVLHDWCEAFPTY- 576 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~-~-~~l~~~~~---------RGl-------i-g~~~~~c~~f~ty- 576 (667)
.+|||+|||.|.++.+|...+. -.|+-+|- . ..+..+-+ .|+ + -...+|.......
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~----~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGA----DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC----SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred CeEEEecccccHHHHHHHHcCC----CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 4799999999999988876322 13344444 2 33333222 222 2 1225676643222
Q ss_pred ----CCccccccccCccccccCCCCCCCcchhheecccccc---C--CcEEEE
Q 005959 577 ----PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILR---P--EGWVII 620 (667)
Q Consensus 577 ----p~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLR---P--~G~~i~ 620 (667)
+.+||+|-++.++-.. -....++-++.|+|+ | ||.+++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~------~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFH------QAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCG------GGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred hhccCCCCCEEEEeCcccCh------HHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 3789999887765432 234578889999999 9 996544
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.055 Score=54.77 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=66.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH---HHHcCC-CceEEee-cccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL---TLERGL-PAMIGSF-ASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~---A~ergl-~~~~~~~-da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+||||||++|.++.+.+... ....|.++|....--+. .+..|- .+.+.+. |...++- ..+|+|+|-.. .
T Consensus 79 g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~DtllcDIg-e 154 (267)
T 3p8z_A 79 EGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKCDTLLCDIG-E 154 (267)
T ss_dssp CEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCCSEEEECCC-C
T ss_pred CCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--ccccEEEEecC-C
Confidence 3699999999999999887763 35579999987532210 011122 2445655 6555543 57999999754 2
Q ss_pred ccccCH----H---HHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 329 DWDQKD----G---ILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 329 ~~~~d~----~---~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
-.+++ . ++|.-+.+.|++ |-|++-.+.+..
T Consensus 155 -Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 155 -SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp -CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred -CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 22222 1 256666889999 788888887655
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.00091 Score=66.87 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=49.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---ccccc-c----cccCCCCC-CCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLH-D----WCEAFPTY-PRTYDL 582 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig~~~-~----~c~~f~ty-p~tyDl 582 (667)
..|||+|||.|.++.+|...... ..|+-+|-. ..+..+-+ .|+ +-+++ | +-++++.. +.+||+
T Consensus 67 ~~vLDlG~G~G~~~~~la~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 67 RRGIDIGTGASCIYPLLGATLNG---WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CEEEEeCCChhHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 47999999999999888752101 234444443 33433322 243 22222 2 22344322 158999
Q ss_pred ccccCcccccc---C-C--C---CCCCcchhheeccccccCCcEEEE
Q 005959 583 VHAEGLLSLES---G-H--R---HRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 583 ~H~~~~~~~~~---~-~--~---~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
|-++-.|.... . . + ....-..++-++-|+|+|||.+.+
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 99975543221 0 0 0 001112345678888888776654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0041 Score=64.70 Aligned_cols=139 Identities=16% Similarity=0.158 Sum_probs=73.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc------cc----cc-cccccccCCCC-CCCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF----VG-VLHDWCEAFPT-YPRTYDLV 583 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R------Gl----ig-~~~~~c~~f~t-yp~tyDl~ 583 (667)
++|||+|||.|+++..|++. .++- +|+-+|-. .-+.++-++ ++ +- +..|..+-... -+.+||+|
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~-~~~~--~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVLRH-GTVE--HCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CEEEEEECTTSHHHHHHHTC-TTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CeEEEEcCCCCHHHHHHHhC-CCCC--EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 68999999999999999862 2221 23333322 222222211 11 11 12232221111 24789999
Q ss_pred cccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC-----HHHHHHHHHHHhhCCCeeE-Eeeec--c--CCCcc
Q 005959 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDAR-VIEIE--S--NSDER 653 (667)
Q Consensus 584 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-----~~~~~~~~~~~~~~~W~~~-~~~~~--~--~~~~~ 653 (667)
-++........ ..---..++-++-|+|+|||.+++... ....+++.+.++..-+... ..... + ++.-.
T Consensus 174 i~d~~~~~~~~--~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~ 251 (304)
T 3bwc_A 174 IIDTTDPAGPA--SKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIG 251 (304)
T ss_dssp EEECC-----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCE
T ss_pred EECCCCccccc--hhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceE
Confidence 98644322110 111114678899999999999999632 2456666666666655433 33211 1 22345
Q ss_pred EEEEEcc
Q 005959 654 LLICQKP 660 (667)
Q Consensus 654 ~li~~K~ 660 (667)
++++.|.
T Consensus 252 f~~as~~ 258 (304)
T 3bwc_A 252 TLVCSKK 258 (304)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 7888875
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0026 Score=68.21 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=70.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cccc-cccccCCCCC---CCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVL-HDWCEAFPTY---PRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig~~-~~~c~~f~ty---p~tyDl~H~ 585 (667)
.+|||+|||.|+|+.+|... .-+|+-+|.. ..+..+-+ .|+ +-++ .|..+.++.. +.+||+|.+
T Consensus 211 ~~VLDlg~G~G~~~~~la~~-----~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALG-----FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHH-----EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeeeccCHHHHHHHHh-----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 57999999999999999862 3455555554 34433332 233 1111 1221211111 468999998
Q ss_pred cCccccccCCCCC------CCcchhheeccccccCCcEEEEEcCH------HHHHHHHHHHhhCCCeeEEee
Q 005959 586 EGLLSLESGHRHR------CSTLDIFTEIDRILRPEGWVIIRDTA------RLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 586 ~~~~~~~~~~~~~------c~~~~~l~E~dRiLRP~G~~i~~d~~------~~~~~~~~~~~~~~W~~~~~~ 645 (667)
+--..... .. -....++.++-|+|+|||++++.... ...+.+++.+.....+..+.+
T Consensus 286 dpP~~~~~---~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~ 354 (382)
T 1wxx_A 286 DPPAFAKG---KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 354 (382)
T ss_dssp CCCCSCCS---TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCC---hhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 64321111 00 12336888999999999999997432 234555556666665555543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0099 Score=60.95 Aligned_cols=141 Identities=14% Similarity=0.132 Sum_probs=74.1
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc------cc----ccc-ccccccCCCCCCCccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF----VGV-LHDWCEAFPTYPRTYDLV 583 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R------Gl----ig~-~~~~c~~f~typ~tyDl~ 583 (667)
-++|||+|||.|+++..++.. .++- .|+-+|-. .-+.++-+. ++ +-+ ..|-.+-.+..+.+||+|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~-~~~~--~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKH-PSVK--KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTC-TTCS--EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCEEEEECCchHHHHHHHHhC-CCCc--eEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 478999999999999999862 2332 22222221 222222111 11 111 112111122235789999
Q ss_pred cccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC-----HHHHHHHHHHHhhCCCeeEEeeec--c--CCCccE
Q 005959 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEIE--S--NSDERL 654 (667)
Q Consensus 584 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~~--~--~~~~~~ 654 (667)
-++.. ..+.. ...--...++-++-|+|+|||.+++... .+.+..+.+..++.=-.+...... . ++.-.+
T Consensus 153 i~d~~-~~~~~-~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~ 230 (275)
T 1iy9_A 153 MVDST-EPVGP-AVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTF 230 (275)
T ss_dssp EESCS-SCCSC-CCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEE
T ss_pred EECCC-CCCCc-chhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEE
Confidence 98543 22210 0111124678899999999999999732 344555555444443334433211 1 224567
Q ss_pred EEEEccc
Q 005959 655 LICQKPF 661 (667)
Q Consensus 655 li~~K~~ 661 (667)
+++.|.+
T Consensus 231 ~~ask~~ 237 (275)
T 1iy9_A 231 TIGSKKY 237 (275)
T ss_dssp EEEESSC
T ss_pred EEeeCCC
Confidence 8888863
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0021 Score=68.02 Aligned_cols=122 Identities=11% Similarity=0.059 Sum_probs=67.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc----cccc-cccccCCCCC---CCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF----VGVL-HDWCEAFPTY---PRTYDLV 583 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl----ig~~-~~~c~~f~ty---p~tyDl~ 583 (667)
..|||+|||.|+|+.++... .. .|+-+|.. ..+..+-++ |+ +-++ .|..+..+.. ..+||+|
T Consensus 155 ~~VLDlgcGtG~~sl~la~~--ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAA--GA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHT--TC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CcEEEcccccCHHHHHHHHc--CC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 47999999999999999873 22 45666654 444433322 33 1122 2222211111 3579999
Q ss_pred cccCc-cccccCC---CCCCCcchhheeccccccCCcEEEEEc------CH-HHHHHHHHHHhhCCCeeEE
Q 005959 584 HAEGL-LSLESGH---RHRCSTLDIFTEIDRILRPEGWVIIRD------TA-RLIESARALTTRLKWDARV 643 (667)
Q Consensus 584 H~~~~-~~~~~~~---~~~c~~~~~l~E~dRiLRP~G~~i~~d------~~-~~~~~~~~~~~~~~W~~~~ 643 (667)
-++-- |...... ...-....++-++-|+|+|||++++.. +. ...+.+++.+.....++..
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~~ 300 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVAS 300 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 87543 2211000 000123468888999999999977742 12 3344445566666666553
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0019 Score=84.76 Aligned_cols=103 Identities=13% Similarity=0.208 Sum_probs=49.5
Q ss_pred CCEEEEeCCCCchHHHHHhhc----CCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccC-CCCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQ-LPYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~----g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~-Lpfpd~sFDlV~~s~~ 326 (667)
..+|||||.|+|..+..+.+. .....+++-.|+|+...+.|+++. +.+.....+... .++..++||+|+++.+
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 469999999999876654432 112356788899877665555441 112221123222 2445678999999987
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+|-..+....|.+++++|||||++++.+..
T Consensus 1321 -l~~t~~~~~~l~~~~~lL~p~G~l~~~e~~ 1350 (2512)
T 2vz8_A 1321 -LATLGDPAVAVGNMAATLKEGGFLLLHTLL 1350 (2512)
T ss_dssp ---------------------CCEEEEEEC-
T ss_pred -ccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence 676677788999999999999999987643
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0052 Score=64.99 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=72.4
Q ss_pred eeEEEeccccchhhhhhhhhcC---CCeEEEEeecCCCC-CchhhHhc----ccc--cccccccccCCCCCCCccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~c~~f~typ~tyDl~H~ 585 (667)
-..|||+|||.|+|+..+.... ..|. -.|-. ..+..+-+ .|+ |-+.+.=.+.++.....||+|-+
T Consensus 204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~-----g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~ 278 (354)
T 3tma_A 204 GMRVLDPFTGSGTIALEAASTLGPTSPVY-----AGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILA 278 (354)
T ss_dssp TCCEEESSCTTSHHHHHHHHHHCTTSCEE-----EEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEE
T ss_pred CCEEEeCCCCcCHHHHHHHHhhCCCceEE-----EEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEE
Confidence 3579999999999987776521 2232 33332 33333322 343 22221111223322356899999
Q ss_pred cCccccccCCCCCCC----cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEee-eccCC-CccEEEEEc
Q 005959 586 EGLLSLESGHRHRCS----TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIE-IESNS-DERLLICQK 659 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~----~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~-~~~~~-~~~~li~~K 659 (667)
+--|..-.. ..-. ...++-++-|+|+|||.+++-..... -++.+.+ ..|+..... ..++. .-.+.+++|
T Consensus 279 npPyg~r~~--~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~--~~~~~~~-~g~~~~~~~~l~~g~l~~~i~vl~r 353 (354)
T 3tma_A 279 NPPHGLRLG--RKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA--LLKRALP-PGFALRHARVVEQGGVYPRVFVLEK 353 (354)
T ss_dssp CCCSCC------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH--HHHHHCC-TTEEEEEEEECCBTTBCCEEEEEEE
T ss_pred CCCCcCccC--CcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHhh-cCcEEEEEEEEEeCCEEEEEEEEEc
Confidence 765532110 1111 14678899999999999988644332 2445555 777765432 22344 345666665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 667 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 9e-08 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 6e-07 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 7e-06 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 1e-05 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 2e-04 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 3e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 9e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.001 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.001 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 0.001 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.002 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.002 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 0.004 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 51.6 bits (122), Expect = 9e-08
Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 8/173 (4%)
Query: 224 SLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIAN 283
++ +E +I + + E VR +LD+ CG G L + + +
Sbjct: 14 TIYRRRIERVKAEIDFVEEIFKE--DAKREVRRVLDLACGTGIPTLELAERGYEVVGLDL 71
Query: 284 YEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD--WDQKDGILLLEV 341
+E + + + FD + + ++ L +V
Sbjct: 72 HEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKV 131
Query: 342 DRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDET 394
LKPGG F+ P F ++ WN + + + + +
Sbjct: 132 AEALKPGGVFI----TDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAV 180
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.2 bits (116), Expect = 6e-07
Identities = 29/268 (10%), Positives = 68/268 (25%), Gaps = 48/268 (17%)
Query: 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL---------FSKELLTMCI 281
+Y + ++ G +LD+ CG G L +
Sbjct: 42 AEYKAWLLGLLRQH--------GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKY 93
Query: 282 ANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS-------LSFDMLHCARCGVDWDQKD 334
A E + + ++ + + + +
Sbjct: 94 ALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEH 153
Query: 335 GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWN--FVRDFVENLCWELVSQQD 392
+ L + +++PGG V N L N + D +++ +++ +
Sbjct: 154 RLALKNIASMVRPGGLLVIDHR--NYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNN 211
Query: 393 ETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRN 452
+ + Y+ + PG+G + YY +
Sbjct: 212 KAHMVTLD-----YTVQVPGAGRDGAPGFSKFRLSYY--------------PHCLASFTE 252
Query: 453 WPSRANLNKNELAVYG-VHPEEFAEDTE 479
A + + +V G P +
Sbjct: 253 LVQEAFGGRCQHSVLGDFKPYRPGQAYV 280
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 45.7 bits (107), Expect = 7e-06
Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 26/177 (14%)
Query: 241 IGLRNESNFILAGV--------RTILDIGCGYGSFGAHL------------FSKELLTMC 280
I +RN +NFI A + ++LD+GCG G ++ +
Sbjct: 4 INIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDA 63
Query: 281 IANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLE 340
+ ++ K+ S F + D
Sbjct: 64 RVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQR----N 119
Query: 341 VDRVLKPGGYFVWTSPLTNP--QAFLRNKENQKRWNFVRDFVENLCWELVSQQDETV 395
+ R L+PGGYF+ T P + + + + + + + + +E++ E V + T+
Sbjct: 120 IARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTL 176
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 6/132 (4%)
Query: 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 315
+LD+G G G + L + + + + + + ++ LP+PS
Sbjct: 45 RVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAR----EKGVKNVVEAKAEDLPFPS 100
Query: 316 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNF 375
+F+ + + + + E+ RVL P G + T N FL+ + W+
Sbjct: 101 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD--NFYTFLQQMIEKDAWDQ 158
Query: 376 VRDFVENLCWEL 387
+ F++ +
Sbjct: 159 ITRFLKTQTTSV 170
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 16/158 (10%), Positives = 38/158 (24%), Gaps = 25/158 (15%)
Query: 219 SFRSASLIFDGVEDYSHQ-IAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL 277
F + S ++++ + + +IG ++ + ++ IL IG G G + SK
Sbjct: 9 RFLNHSTEHQCMQEFMDKKLPGIIGRIGDTK---SEIK-ILSIGGGAGEIDLQILSKVQA 64
Query: 278 TMCIANYEASG-------------------SQVQLTLERGLPAMIGSFASKQLPYPSLSF 318
+ + + +
Sbjct: 65 QYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKW 124
Query: 319 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356
D +H + L +L +
Sbjct: 125 DFIHMIQMLYYVKDIPA-TLKFFHSLLGTNAKMLIIVV 161
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 10/138 (7%)
Query: 231 EDYSHQIAEMIGLRNESNFILAGVR-----TILDIGCGYGSFGAHLFSKELLTMCIANYE 285
E+Y E GL + +LA + LD+GCG G +L +
Sbjct: 6 ENYFT---EKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNP 62
Query: 286 ASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW--DQKDGILLLEVDR 343
AS + ++ + + + + + Q L+ + R
Sbjct: 63 ASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQR 122
Query: 344 VLKPGGYFVWTSPLTNPQ 361
KPGGY + + + P
Sbjct: 123 CTKPGGYNLIVAAMDTPD 140
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (91), Expect = 9e-04
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 1/105 (0%)
Query: 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 315
I+D G G G+ A L + + YE +L + + ++ S
Sbjct: 106 RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 165
Query: 316 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360
FD +D + + LK GG F P TN
Sbjct: 166 EGFDEKDVDALFLDVPDPWNYID-KCWEALKGGGRFATVCPTTNQ 209
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.9 bits (89), Expect = 0.001
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 10/136 (7%)
Query: 231 EDYSHQIAEMIGLRNESNFILAGVR-------TILDIGCGYGSFGAHLFSKELLTMCIAN 283
Y I + + S+FI+ LD+ CG G+ +L K T +
Sbjct: 8 HIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDL 67
Query: 284 YEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGIL---LLE 340
+ S+ + + + FD++ C ++ L
Sbjct: 68 SQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKA 127
Query: 341 VDRVLKPGGYFVWTSP 356
V LK GG F++
Sbjct: 128 VSNHLKEGGVFIFDIN 143
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 39.1 bits (90), Expect = 0.001
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 4/123 (3%)
Query: 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP 314
I+D GCGYG G L ++ + + E S +
Sbjct: 29 VHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE 88
Query: 315 SLSFDMLHCARC--GVDWDQKDGILLLEVDRVLKPGGYFVWTSP--LTNPQAFLRNKENQ 370
D A C + +L ++ +K GG + P ++N ++L + E Q
Sbjct: 89 IELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQ 148
Query: 371 KRW 373
+
Sbjct: 149 SEF 151
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 38.7 bits (89), Expect = 0.001
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 3/115 (2%)
Query: 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP 314
+L++G G F + L C+ EAS + R + + +
Sbjct: 22 GNLLELGSFKGDFTSRLQEHFNDITCV---EASEEAISHAQGRLKDGITYIHSRFEDAQL 78
Query: 315 SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 369
+D + D +L D L GG P N + +
Sbjct: 79 PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKM 133
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 38.0 bits (87), Expect = 0.002
Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query: 256 TILDIGCGYGSFGAHL--FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY 313
+LDIG G G + +E + + + + ++ LP+
Sbjct: 19 RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78
Query: 314 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRW 373
P SFD++ C + + EV RVLK G F+ L E
Sbjct: 79 PDDSFDIITCRYAAHHFSDVRKA-VREVARVLKQDGRFLLVDHYAPEDPVLD--EFVNHL 135
Query: 374 NFVRD 378
N +RD
Sbjct: 136 NRLRD 140
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 38.1 bits (88), Expect = 0.002
Identities = 11/123 (8%), Positives = 33/123 (26%), Gaps = 1/123 (0%)
Query: 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP 314
IL++G G G+ +++ + E ++ ++
Sbjct: 87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 146
Query: 315 SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWN 374
+ D + ++ ++KPG + P + + +
Sbjct: 147 ADFISDQMYDAVIADIPDPWNHVQ-KIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 205
Query: 375 FVR 377
+
Sbjct: 206 HLE 208
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 36.3 bits (83), Expect = 0.004
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 23/131 (17%)
Query: 256 TILDIGCGYGSFG-----------AHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG 304
+D+GCG G A + E ++ N + G +TL G
Sbjct: 36 VAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG------ 89
Query: 305 SFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 364
+ + D+ G + + +L + LKPGG + T+ L +
Sbjct: 90 --DAPEALCKIPDIDIAVVGGSGGELQE----ILRIIKDKLKPGGRIIVTAILLETKFEA 143
Query: 365 RNKENQKRWNF 375
++
Sbjct: 144 MECLRDLGFDV 154
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 667 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.73 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.72 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.71 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.67 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.64 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.64 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.63 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.6 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.59 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.54 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.54 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.54 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.53 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.51 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.51 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.51 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.48 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.47 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.42 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.41 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.41 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.39 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.38 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.37 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.36 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.32 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.32 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.31 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.31 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.26 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.25 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.24 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.23 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.22 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.22 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.14 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.13 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.13 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.13 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.11 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.1 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.08 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.05 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.02 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.02 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.99 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.96 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.93 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.91 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.68 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.65 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.65 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.53 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.52 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.49 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.49 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.46 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.44 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.42 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.41 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.41 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.34 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.34 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.28 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.27 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.24 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.22 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.21 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.2 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.19 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.18 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.16 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.15 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.1 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.07 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.06 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.05 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.04 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.0 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.96 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.95 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.95 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 97.93 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 97.93 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 97.93 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.92 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.88 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 97.88 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.87 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.86 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 97.85 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.84 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 97.83 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.83 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 97.83 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 97.82 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 97.81 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.77 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 97.74 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.72 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.72 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.69 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 97.64 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.64 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.64 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 97.55 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 97.53 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.52 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 97.52 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 97.5 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 97.48 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 97.47 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.46 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.45 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.45 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 97.44 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 97.43 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.39 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 97.33 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.22 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 97.16 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.13 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 97.12 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 97.12 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 97.11 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.06 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.02 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 96.95 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.95 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 96.91 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.84 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.72 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.7 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.67 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 96.48 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.47 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.44 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.32 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.17 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 96.15 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 96.14 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 95.69 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 95.56 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 95.53 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.45 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.26 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.22 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.08 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 94.76 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 94.42 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 94.29 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.24 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 94.18 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 94.07 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 93.82 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.62 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.4 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.35 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 93.12 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 93.0 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 92.97 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.83 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 91.9 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 91.74 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.66 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 91.22 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.2 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.73 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 90.7 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 89.98 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 89.93 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 89.91 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.74 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 89.5 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 89.42 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.2 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 88.16 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 88.16 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 88.05 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 87.62 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 86.84 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 84.34 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 83.62 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 83.19 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 81.15 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 80.83 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 80.5 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 80.48 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 80.44 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 80.21 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=9.9e-18 Score=165.93 Aligned_cols=115 Identities=23% Similarity=0.298 Sum_probs=98.6
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeec
Q 005959 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFA 307 (667)
Q Consensus 233 y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~d 307 (667)
..+.+.+.+.++++ .+|||||||+|.++..|++++ .+|+|+|+|+.|++.|+++ +. ++.+.+++
T Consensus 4 ~~~~l~~~~~~~~~--------~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d 72 (234)
T d1xxla_ 4 SLGLMIKTAECRAE--------HRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGT 72 (234)
T ss_dssp HHHHHHHHHTCCTT--------CEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECB
T ss_pred HHHHHHHHhCCCCC--------CEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccc
Confidence 34556777777766 899999999999999999985 4689999999999888654 33 47788999
Q ss_pred ccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 308 SKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 308 a~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
++.+||++++||+|+|..+ ++|.+++..+|+++.|+|||||+++++++...
T Consensus 73 ~~~~~~~~~~fD~v~~~~~-l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~ 123 (234)
T d1xxla_ 73 AESLPFPDDSFDIITCRYA-AHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 123 (234)
T ss_dssp TTBCCSCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred cccccccccccceeeeece-eecccCHHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence 9999999999999999988 66678899999999999999999999876543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.72 E-value=1.1e-17 Score=164.12 Aligned_cols=112 Identities=15% Similarity=0.282 Sum_probs=94.6
Q ss_pred HHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCceEEeeccc
Q 005959 235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASK 309 (667)
Q Consensus 235 ~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~ 309 (667)
.++.+.+.+.++ .+|||||||+|.++..+++++ .+++++|+|+.|++.|+++ + .++.+.+++++
T Consensus 5 ~~ll~~~~l~~~--------~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~ 73 (231)
T d1vl5a_ 5 AKLMQIAALKGN--------EEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE 73 (231)
T ss_dssp HHHHHHHTCCSC--------CEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-
T ss_pred HHHHHhcCCCCc--------CEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccccccccccccccccc
Confidence 355566665554 899999999999999999886 3689999999999988654 3 35678899999
Q ss_pred CCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 310 QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 310 ~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+|+++++||+|+|..+ ++|.+++..+|+++.|+|||||+|++.++..
T Consensus 74 ~l~~~~~~fD~v~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 74 QMPFTDERFHIVTCRIA-AHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp CCCSCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccccccccccccccc-ccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99999999999999998 6677889999999999999999999987643
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=1.5e-17 Score=163.67 Aligned_cols=101 Identities=21% Similarity=0.364 Sum_probs=89.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..|++.+. .|+|+|+|+.|++.|++++... +..++++.+|+++++||+|+|...++||.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCEEEEECCCCchhcccccccce---EEEEeecccccccccccccccc-cccccccccccccccccceeeecchhhhhh
Confidence 347899999999999999998863 6899999999999999987554 556899999999999999999765588888
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++..+|+++.|+|||||+++++.+.
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hHHHHHHHHHhhcCcCcEEEEEECC
Confidence 9999999999999999999999864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=1.4e-16 Score=154.54 Aligned_cols=101 Identities=22% Similarity=0.292 Sum_probs=86.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+|||||||+|.++..|++.+ ..|+|+|+|+.|++.|+++ +..+.+..+++..+|+++++||+|+|..++.|
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~~---~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~ 114 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 114 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCEEEEECCCcchhhhhHhhhh---cccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence 3689999999999999999885 3589999999999888754 56677888899999999999999999998555
Q ss_pred cc-cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WD-QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+. .+..++|+++.++|||||+|++..+.
T Consensus 115 ~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 115 FEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 43 25568999999999999999998764
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=3.8e-16 Score=151.07 Aligned_cols=96 Identities=24% Similarity=0.315 Sum_probs=85.3
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccCH
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD 334 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~ 334 (667)
.+|||||||+|.++..+.+ ++++|+|+.|++.|++++ +.+.+++++.+|+++++||+|+|..+ +++.+++
T Consensus 38 ~~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~-l~h~~d~ 107 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTT-ICFVDDP 107 (208)
T ss_dssp SCEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESC-GGGSSCH
T ss_pred CeEEEECCCCcccccccce-------EEEEeCChhhcccccccc--cccccccccccccccccccccccccc-ccccccc
Confidence 5899999999999988853 378999999999999875 56778899999999999999999988 5566789
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 335 GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 335 ~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
..+|+++.|+|+|||.+++.++....
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred ccchhhhhhcCCCCceEEEEecCCcc
Confidence 99999999999999999999987654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.64 E-value=3.2e-16 Score=159.47 Aligned_cols=104 Identities=24% Similarity=0.305 Sum_probs=89.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
++.+|||||||+|.++..|+++. ...|+++|+|+.|++.|+++ ++ .+.+.++++..+|+++++||+|+|..+
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 144 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccch
Confidence 45899999999999999999862 34689999999999888765 44 467889999999999999999999988
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+++.+++..+|+++.|+|||||+|++.++...
T Consensus 145 -l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~ 176 (282)
T d2o57a1 145 -FLHSPDKLKVFQECARVLKPRGVMAITDPMKE 176 (282)
T ss_dssp -GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred -hhhccCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence 44557888999999999999999999987543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=5.5e-16 Score=154.37 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEE
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIG 304 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~ 304 (667)
....+.+.+.+.+.++ .+|||||||+|.++..++++. ...|+|+|+|+.|++.|+++ ++. +.+.
T Consensus 19 ~~~~~~l~~~~~l~pg--------~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~ 88 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPG--------TRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFI 88 (245)
T ss_dssp HHHHHHHHHHTCCCTT--------CEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHcCCCCC--------CEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhh
Confidence 4455667777777666 899999999999999998762 35689999999999888765 543 6788
Q ss_pred eecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 305 SFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 305 ~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.+|+..+ +++++||+|+|..+ +++..+...+|++++|+|||||++++.++.
T Consensus 89 ~~d~~~~-~~~~~fD~v~~~~~-~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 89 HNDAAGY-VANEKCDVAACVGA-TWIAGGFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp ESCCTTC-CCSSCEEEEEEESC-GGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred hhHHhhc-cccCceeEEEEEeh-hhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence 8899888 56789999999998 555668889999999999999999998864
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.4e-15 Score=154.45 Aligned_cols=100 Identities=22% Similarity=0.351 Sum_probs=88.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
.+.+|||||||+|.++..|++.+ ....++|+|+|+.|++.|+++..++.+.++|+.++|+++++||+|++.++..+
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 45799999999999999999884 44678999999999999999988899999999999999999999999876322
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCChh
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~ 361 (667)
++|+.|+|||||+|++++|.+...
T Consensus 160 -----~~e~~rvLkpgG~l~~~~p~~~~l 183 (268)
T d1p91a_ 160 -----AEELARVVKPGGWVITATPGPRHL 183 (268)
T ss_dssp -----HHHHHHHEEEEEEEEEEEECTTTT
T ss_pred -----HHHHHHHhCCCcEEEEEeeCCcch
Confidence 578999999999999999987654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.59 E-value=1.4e-15 Score=150.65 Aligned_cols=101 Identities=20% Similarity=0.309 Sum_probs=86.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
+..+|||||||+|.++..|++++. +++|+|+|+.|++.|+++ +.++.+.+++++++++++ +||+|+|....+
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~-~fD~I~~~~~~~ 116 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN-EFDAVTMFFSTI 116 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS-CEEEEEECSSGG
T ss_pred CCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhhhccccc-ccchHhhhhhhh
Confidence 457899999999999999999864 589999999999988765 667889999999999884 899999986545
Q ss_pred ccc--cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWD--QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~--~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++. ++...+|++++++|||||+|++..+.
T Consensus 117 ~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 117 MYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 554 34468999999999999999998764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.54 E-value=1.1e-14 Score=148.50 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=88.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+.+|||||||+|.++..|++.......|+++|+|+.|++.|+++ +.++.+.+.|+..+++++ +||+|+|..+ +
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~-~fD~v~~~~~-l 104 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELND-KYDIAICHAF-L 104 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-CEEEEEEESC-G
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccC-CceEEEEehh-h
Confidence 468999999999999999988633345799999999999998765 445678888999999864 7999999988 6
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
|+.+++..+|+++.++|||||.+++.++.
T Consensus 105 ~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 105 LHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp GGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 66788999999999999999999999874
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.54 E-value=3.3e-14 Score=139.49 Aligned_cols=108 Identities=13% Similarity=0.070 Sum_probs=82.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC-CceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g-~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+..+|||||||+|..+..|++.. .....|+|+|+|+.|++.|+++ +....+........+++...||+|+|+.++
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l 118 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 118 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence 34789999999999999998752 2456899999999999999875 333333333334445566689999999884
Q ss_pred cccc-cCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 328 VDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 328 l~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+++. ++..++|++++|+|||||.|++.++....
T Consensus 119 ~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~ 152 (225)
T d1im8a_ 119 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 152 (225)
T ss_dssp GGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred cccChhhHHHHHHHHHHhCCCCceeecccccccc
Confidence 4433 46678999999999999999999876533
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.54 E-value=1.5e-14 Score=143.50 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=83.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+.+|||||||+|.++..|++++. .++|+|.|+.|++.|+++ +.++.+.++|+..++++ ++||+|+|....+
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDST 112 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhhhccc-ccccccceeeeee
Confidence 357899999999999999999864 589999999999988764 67888999999988875 5899999975434
Q ss_pred ccc---cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWD---QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~---~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++. ++..++|++++++|||||.|++...
T Consensus 113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 443 3445799999999999999998765
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.53 E-value=2e-14 Score=141.37 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=86.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
+.+|||||||+|.++..|++++. .|+++|+|+.|++.|+++.. ++.+..++.+.+++ +++||+|+|..+ ++|.+
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~v-leh~~ 95 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHV-LEHID 95 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESC-GGGCS
T ss_pred CCcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccce-eEecC
Confidence 46899999999999999998863 48999999999999987743 46677788888876 479999999988 66678
Q ss_pred CHHHHHHHHH-hcccCCeEEEEEeCCCC
Q 005959 333 KDGILLLEVD-RVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 333 d~~~~L~Ei~-RvLKPGG~Lvis~p~~~ 359 (667)
++..+|.++. |+|||||.++++.|...
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~~ 123 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNAN 123 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 9999999998 89999999999988654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.7e-14 Score=141.49 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=87.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-----CceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-----~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+..+|||||||+|.++..|++.+. ..|+++|+|+.|++.|+++.. ...+.+++++.+++++++||+|+|..++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 457899999999999999887653 468999999999999987632 3468889999999999999999999985
Q ss_pred cccccCH--HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 328 VDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 328 l~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+| .+++ ..+|++++++|||||.+++.++...
T Consensus 138 ~h-~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~ 170 (222)
T d2ex4a1 138 GH-LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ 170 (222)
T ss_dssp GG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred cc-chhhhhhhHHHHHHHhcCCcceEEEEEcccc
Confidence 55 4444 4799999999999999999986543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.51 E-value=1.8e-14 Score=135.99 Aligned_cols=103 Identities=9% Similarity=-0.101 Sum_probs=81.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----------------CCceEEeecccCCCC-C
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------------LPAMIGSFASKQLPY-P 314 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----------------l~~~~~~~da~~Lpf-p 314 (667)
++.+|||+|||+|..+.+|+++|+ .|+|+|+|+.|++.|+++. ....+..++...++. .
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 348999999999999999999975 4899999999999998752 233466667766663 4
Q ss_pred CCCccEEEeccccccccc-CHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 315 SLSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 315 d~sFDlV~~s~~ll~~~~-d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
..+||+|++..++++..+ +...+++++.++|||||.+++.....
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 578999999988555443 24679999999999999998876543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.51 E-value=1.3e-14 Score=146.19 Aligned_cols=105 Identities=14% Similarity=0.213 Sum_probs=87.4
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 252 ~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
....+|||+|||+|.++..|+..++ ..|+++|+|+.|++.|+++.. .+.+.+.+++.+++++++||+|+|..+++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecccc
Confidence 3557999999999999999887643 368999999999999987742 24677889999999999999999999855
Q ss_pred ccccCH--HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 329 DWDQKD--GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 329 ~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
|+ ++. ..+|++++++|||||++++.++...
T Consensus 170 hl-~d~d~~~~l~~~~~~LkpgG~iii~e~~~~ 201 (254)
T d1xtpa_ 170 YL-TDADFVKFFKHCQQALTPNGYIFFKENCST 201 (254)
T ss_dssp GS-CHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred cc-chhhhHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 54 443 4789999999999999999887543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.48 E-value=7.6e-14 Score=134.40 Aligned_cols=101 Identities=18% Similarity=0.286 Sum_probs=82.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
+.+|||||||+|..+..|+++|. .|+++|+|+.|++.++++ ++. +.+...|...+++ +++||+|+|..+++
T Consensus 31 ~grvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMM 106 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGG
T ss_pred CCcEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeee
Confidence 36899999999999999999974 589999999999877543 444 4667778888876 57999999998855
Q ss_pred ccccC-HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 329 DWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 329 ~~~~d-~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
|+.+. ..++++++.++|+|||++++..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 54332 3579999999999999999987643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.47 E-value=4.7e-14 Score=141.01 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=83.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCC-CCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPY-PSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpf-pd~sFDlV~~s~ 325 (667)
+..+|||||||+|..+..+++.+. ..|+|+|+|+.|++.|+++ +. .+.+.++|+...++ .+++||+|+|..
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CcCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 347999999999999999988763 3689999999999999865 22 45677888877776 467899999998
Q ss_pred cccccccC---HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWDQK---DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~~d---~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+++|+..+ ...+|+++.++|||||+|+++.+.
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 85555433 347999999999999999998874
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.42 E-value=3.9e-13 Score=129.46 Aligned_cols=130 Identities=17% Similarity=0.238 Sum_probs=94.1
Q ss_pred cccccccccccccc--cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH
Q 005959 214 EEEQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV 291 (667)
Q Consensus 214 ek~~~~F~~~~~~y--d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml 291 (667)
.+....|......| +......+.+.+.+... ...+|||||||+|.++..+++.+ .+++++|.|+.++
T Consensus 19 ~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~--------~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i 87 (194)
T d1dusa_ 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVD--------KDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAI 87 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCC--------TTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHH
T ss_pred CCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcC--------CCCeEEEEeecCChhHHHHHhhc---cccceeeeccccc
Confidence 35555676655554 22222234455555433 34899999999999999999874 3689999999999
Q ss_pred HHHHHc----CC---CceEEeecccCCCCCCCCccEEEecccccccccC-HHHHHHHHHhcccCCeEEEEEeC
Q 005959 292 QLTLER----GL---PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 292 ~~A~er----gl---~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d-~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.|+++ ++ .+.+...|... ++++++||+|+|+.. +|...+ ...++.++.++|+|||.+++...
T Consensus 88 ~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 88 KLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP-IRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC-STTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEccc-EEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 988753 33 35666677655 677889999999977 444433 36799999999999999988654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.3e-13 Score=132.14 Aligned_cols=117 Identities=10% Similarity=-0.024 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------------
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------------ 298 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------------ 298 (667)
..+.+.+.+.+.... +.+|||+|||+|..+.+|+++|+ .|+|+|.|+.+|+.|+++.
T Consensus 31 ~~l~~~~~~~l~~~~--------~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~ 99 (229)
T d2bzga1 31 QLLKKHLDTFLKGKS--------GLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEI 99 (229)
T ss_dssp HHHHHHHHHHHTTCC--------SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTS
T ss_pred HHHHHHHHHhcCCCC--------CCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcc
Confidence 334445555555433 37999999999999999999985 4899999999999887653
Q ss_pred ----------CCceEEeecccCCC-CCCCCccEEEecccccccccC-HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 299 ----------LPAMIGSFASKQLP-YPSLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 299 ----------l~~~~~~~da~~Lp-fpd~sFDlV~~s~~ll~~~~d-~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
..+.+.++|...++ ...++||+|+...++++..++ ...+++++.++|||||++++..+..
T Consensus 100 ~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~ 171 (229)
T d2bzga1 100 PGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY 171 (229)
T ss_dssp TTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred cccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence 23456667766664 567899999999886666543 4679999999999999988876543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=3.7e-13 Score=138.47 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=88.1
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeec
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFA 307 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~d 307 (667)
...+.+.+.+.+.++ .+|||||||.|.++.+++++. ...|+++++|+++++.++++ ++...+. ..
T Consensus 48 ~k~~~~~~~l~l~~G--------~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~-~~ 116 (291)
T d1kpia_ 48 AKRKLALDKLNLEPG--------MTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKE-VR 116 (291)
T ss_dssp HHHHHHHHTTCCCTT--------CEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEE-EE
T ss_pred HHHHHHHHhcCCCCC--------CEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhh-hh
Confidence 334455555555444 899999999999999998762 35789999999999877654 5543322 12
Q ss_pred ccCCCCCCCCccEEEeccccccccc--------CHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 308 SKQLPYPSLSFDMLHCARCGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 308 a~~Lpfpd~sFDlV~~s~~ll~~~~--------d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
....++++++||.|+|..++.|+.+ +...+++++.++|||||.+++.+.+...
T Consensus 117 ~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~ 177 (291)
T d1kpia_ 117 IQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 177 (291)
T ss_dssp ECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCC
T ss_pred hhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccC
Confidence 2334567889999999999777653 2468999999999999999998876543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.7e-13 Score=136.06 Aligned_cols=105 Identities=17% Similarity=0.085 Sum_probs=80.7
Q ss_pred CCEEEEeCCCCchHHHHHhhc-----CCceeEEEEecCCHHHHHHHHHcC-----CC---ceEEeeccc------CCCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSK-----ELLTMCIANYEASGSQVQLTLERG-----LP---AMIGSFASK------QLPYP 314 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~-----g~~~~sV~gvD~S~~ml~~A~erg-----l~---~~~~~~da~------~Lpfp 314 (667)
..+|||||||+|.++..+++. ......++++|+|+.|++.|+++. ++ ..+...+++ ..+++
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 348999999999998887653 112456899999999999998752 11 122333322 24677
Q ss_pred CCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 315 SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 315 d~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+++||+|+|.++ +||.+++..+|++++++|+|||++++..+...
T Consensus 121 ~~~fD~I~~~~~-l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 121 LQKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp CCCEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred CCceeEEEEccc-eecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 899999999999 66778899999999999999999999887543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=8e-13 Score=135.11 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=78.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCce--EEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~--~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
++.+|||||||+|.++.+++++. ...|+++|+|+++++.|+++ ++... +...+...+ +++||.|++..+
T Consensus 52 ~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~ 126 (280)
T d2fk8a1 52 PGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEA 126 (280)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESC
T ss_pred CCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhH
Confidence 34899999999999999998772 34799999999999888765 44433 333343333 468999999999
Q ss_pred cccccc-CHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~-d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+.|+.. +...+|+++.++|||||.+++.+...
T Consensus 127 ~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~ 159 (280)
T d2fk8a1 127 FEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 159 (280)
T ss_dssp GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred HHHhhhhhHHHHHHHHHhccCCCceEEEEEeec
Confidence 777653 34789999999999999999987544
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=4.3e-13 Score=136.78 Aligned_cols=114 Identities=18% Similarity=0.336 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-----c
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-----A 301 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-----~ 301 (667)
..+.+.+.+.+.... ..+|||||||+|.++..|+++|. .|+|+|+|+.|++.|+++ +.. .
T Consensus 42 ~~~~~~l~~~l~~~~--------~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~ 110 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHG--------CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKW 110 (292)
T ss_dssp HHHHHHHHHHHHHTT--------CCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTC
T ss_pred HHHHHHHHHHhhhcC--------CCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhccccccccee
Confidence 334445555555433 37999999999999999999874 589999999999998764 222 2
Q ss_pred eEEeeccc----CCCCCCCCccEEEeccccccccc-------CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 302 MIGSFASK----QLPYPSLSFDMLHCARCGVDWDQ-------KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 302 ~~~~~da~----~Lpfpd~sFDlV~~s~~ll~~~~-------d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+..++.. .+|. .++||+|+|....+++.. +...+|+++.|+|||||+|++...
T Consensus 111 ~~~~~~~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 111 VIEEANWLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EEEECCGGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeeccccccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 23333332 2233 468999999764344432 245799999999999999999765
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.36 E-value=1.5e-12 Score=133.50 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=81.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
++.+|||||||.|.++.++++. ..+.|+++++|+.+++.|+++ ++ .+.+..+|...++ ++||.|++..+
T Consensus 62 ~G~~VLDiGCG~G~~a~~~a~~--~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~ 136 (285)
T d1kpga_ 62 PGMTLLDVGCGWGATMMRAVEK--YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA 136 (285)
T ss_dssp TTCEEEEETCTTSHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CCCEEEEecCcchHHHHHHHhc--CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehh
Confidence 3489999999999999999887 246799999999999888765 32 3455666665553 68999999999
Q ss_pred ccccc-cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWD-QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.|+. .+...+++++.|+|||||.+++.+..
T Consensus 137 ~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 137 FEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 77765 34478999999999999999998765
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.2e-12 Score=129.21 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEee
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSF 306 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~ 306 (667)
..+.+.+++.+.. .+.+|||||||+|.++..+++++ ..+++++|+|+.|++.|+++. ..+.+...
T Consensus 40 ~~~~~~la~~~~~---------~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~ 108 (229)
T d1zx0a1 40 TPYMHALAAAASS---------KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG 108 (229)
T ss_dssp HHHHHHHHHHHTT---------TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES
T ss_pred HHHHHHHHHhhcc---------CCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcccccccccc
Confidence 3455555555441 34799999999999999999874 457999999999999998763 23333333
Q ss_pred ccc--CCCCCCCCccEEEe-----cccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 307 ASK--QLPYPSLSFDMLHC-----ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 307 da~--~Lpfpd~sFDlV~~-----s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
++. ..++++++||.|+. ... +++..+...++++++|+|||||+|++..
T Consensus 109 ~~~~~~~~~~~~~fD~i~fD~~~~~~~-~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 109 LWEDVAPTLPDGHFDGILYDTYPLSEE-TWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBGG-GTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccccccccceeecccccccc-cccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 333 34678889999984 333 3344567789999999999999998854
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.32 E-value=3.3e-12 Score=122.10 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=93.7
Q ss_pred cccccccccc-hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-
Q 005959 220 FRSASLIFDG-VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER- 297 (667)
Q Consensus 220 F~~~~~~yd~-~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er- 297 (667)
|.+.+..+.. ..+....+...+...++ .+|||||||+|.++..+++.+ ..|+++|.++.|++.|+++
T Consensus 7 f~~~~~~~~~t~~eir~~il~~l~~~~g--------~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~ 75 (186)
T d1l3ia_ 7 FIKNPSVPGPTAMEVRCLIMCLAEPGKN--------DVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNL 75 (186)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHCCCTT--------CEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHH
T ss_pred hccCCCCCCCChHHHHHHHHHhcCCCCC--------CEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHH
Confidence 4444444422 23344455556655444 899999999999999998874 4689999999999988764
Q ss_pred ---CC--CceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 298 ---GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 298 ---gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++ ++.+.++++..++++...||+|++.... .+...++.++.+.|||||++++....
T Consensus 76 ~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~----~~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 76 QRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG----GELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp HHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT----TCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred HHcCCCcceEEEECchhhcccccCCcCEEEEeCcc----ccchHHHHHHHHHhCcCCEEEEEeec
Confidence 44 5677888888888888899999998652 23567999999999999999988763
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.6e-13 Score=132.03 Aligned_cols=134 Identities=15% Similarity=0.018 Sum_probs=90.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCce--------------------------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAM-------------------------- 302 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~-------------------------- 302 (667)
.+.+|||||||+|.++..++..+ ...|+|+|+|+.|++.|+++. ....
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 45789999999999988887764 457999999999999987641 1100
Q ss_pred -----EE----eecccCCCCCCCCccEEEeccccccccc---CHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhH---
Q 005959 303 -----IG----SFASKQLPYPSLSFDMLHCARCGVDWDQ---KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK--- 367 (667)
Q Consensus 303 -----~~----~~da~~Lpfpd~sFDlV~~s~~ll~~~~---d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~--- 367 (667)
.. ..+....++++++||+|++.++++|... +...+++++.|+|||||+|++.++...........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 00 1122234678899999999999655543 44579999999999999999998755321110000
Q ss_pred HHHhhhhhhhhhhhccceEEe
Q 005959 368 ENQKRWNFVRDFVENLCWELV 388 (667)
Q Consensus 368 e~~~~W~~ie~l~~~~~W~ll 388 (667)
......+.++.+.+.-+++.+
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~ 229 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIE 229 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEE
T ss_pred ccCCCHHHHHHHHHHCCCEEE
Confidence 001122455666667777654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.31 E-value=9.4e-13 Score=132.90 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
++.+|||+|||+|.++..+++.|. .|+++|+|+.|++.|++ .+++..+..++... .+++++||+|+++.. .
T Consensus 120 ~g~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~-~ 194 (254)
T d2nxca1 120 PGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLY-A 194 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECC-H
T ss_pred ccCEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccc-c
Confidence 358999999999999999988863 58999999999988764 46777787777654 356789999999744 2
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.....++.++.++|||||+|++++..
T Consensus 195 ---~~l~~l~~~~~~~LkpGG~lilSgil 220 (254)
T d2nxca1 195 ---ELHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp ---HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ---ccHHHHHHHHHHhcCCCcEEEEEecc
Confidence 22457889999999999999998764
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.26 E-value=1.3e-11 Score=123.43 Aligned_cols=104 Identities=22% Similarity=0.310 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
..++|||||||+|.++..++++. +...++++|. +.+++.++++ ++ .+.+..+|+.. +.+ .+||+|++..+
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~v 155 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSFV 155 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEESC
T ss_pred cCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hcc-cchhheeeccc
Confidence 45799999999999999999884 4567889998 4577666543 43 35667677543 233 57999999999
Q ss_pred ccccccCH-HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 327 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 327 ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+++|.++. .++|++++++|||||+|++.+.....
T Consensus 156 lh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~ 190 (253)
T d1tw3a2 156 LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLH 190 (253)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCG
T ss_pred cccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 66665332 47899999999999999999875543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.25 E-value=9.5e-12 Score=123.58 Aligned_cols=137 Identities=14% Similarity=0.105 Sum_probs=92.5
Q ss_pred ccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCC-CCCCCCccEEEec
Q 005959 249 FILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQL-PYPSLSFDMLHCA 324 (667)
Q Consensus 249 l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~L-pfpd~sFDlV~~s 324 (667)
+...++.+|||||||+|.++..+++.+ +...|+|+|+|+.|++.++++. .+......+.... ++.+..||++++.
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~ 148 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEee
Confidence 334566899999999999999999874 4568999999999999887652 2333444444333 3566778877666
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeec
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~ 390 (667)
.. +++.++...++.++++.|||||++++++........ .......+......+..+++.+.+
T Consensus 149 ~~-~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~---~~~~~~~~e~~~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 149 ED-VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT---KDPKEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp EC-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS---SCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred cc-ccchHHHHHHHHHHHHhcccCceEEEEeeccccCCC---CCHHHHHHHHHHHHHHcCCEEEEE
Confidence 54 555677788999999999999999998643211100 011122334445555667776643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.24 E-value=8.5e-12 Score=122.12 Aligned_cols=105 Identities=19% Similarity=0.059 Sum_probs=78.0
Q ss_pred ccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCceEEeecccCCCCCCCCccEEEecccc
Q 005959 251 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 251 ~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..++.+|||||||+|.++.++++.. ....|+|+|+|+.|++.|+++ ..++.+...++...+.....+|.+.+.+..
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~ 132 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 132 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEec
Confidence 3456899999999999999999873 345799999999999877543 235666777777666555555544433222
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+++..+...++.++.++|||||++++.+.
T Consensus 133 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 133 IAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 44445667899999999999999999864
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=1.4e-11 Score=124.93 Aligned_cols=110 Identities=16% Similarity=0.084 Sum_probs=90.6
Q ss_pred HHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc--------CCCceEEee
Q 005959 235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------GLPAMIGSF 306 (667)
Q Consensus 235 ~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er--------gl~~~~~~~ 306 (667)
..+...+...++ .+|||+|||+|.++..|++.-.+...++++|.++++++.|+++ -.+..+...
T Consensus 86 s~Ii~~l~i~PG--------~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~ 157 (264)
T d1i9ga_ 86 AQIVHEGDIFPG--------ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157 (264)
T ss_dssp HHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred HHHHHHhCCCCC--------CEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence 355666666665 8999999999999999998733456799999999999998763 135667888
Q ss_pred cccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 307 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 307 da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
|....++++++||.|++. .+++..++.++.++|||||.+++..|+.
T Consensus 158 d~~~~~~~~~~fDaV~ld------lp~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 158 DLADSELPDGSVDRAVLD------MLAPWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CGGGCCCCTTCEEEEEEE------SSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccccccccCCCcceEEEe------cCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 988899999999999863 3667789999999999999999998864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=1.2e-11 Score=121.12 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 305 (667)
......+.+.+...++ .+|||||||+|.++..|++.......|+++|.++.+++.|+++ ++ +..+..
T Consensus 61 P~~~a~~l~~l~l~~g--------~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~ 132 (213)
T d1dl5a1 61 PSLMALFMEWVGLDKG--------MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC 132 (213)
T ss_dssp HHHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred chhhHHHHHhhhcccc--------ceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccccccccc
Confidence 3445566667766655 8999999999999999987633456799999999999988765 33 455667
Q ss_pred ecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+|....++.+++||+|++..++.+ .+ .++.++|||||++++..
T Consensus 133 ~d~~~~~~~~~~fD~I~~~~~~~~-~p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 133 GDGYYGVPEFSPYDVIFVTVGVDE-VP------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp SCGGGCCGGGCCEEEEEECSBBSC-CC------HHHHHHEEEEEEEEEEB
T ss_pred CchHHccccccchhhhhhhccHHH-hH------HHHHHhcCCCcEEEEEE
Confidence 788777777889999999987443 32 25678899999999854
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.22 E-value=1.4e-11 Score=120.28 Aligned_cols=99 Identities=13% Similarity=0.214 Sum_probs=81.9
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CceEEeecccCCC--CCCCCccEEEecccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQLP--YPSLSFDMLHCARCG 327 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~Lp--fpd~sFDlV~~s~~l 327 (667)
..|||||||+|.++..|++.. +...++|+|+++.++..|.+ .++ ++.+..+|+..+. ++++++|.|++.+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp- 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS- 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred ceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc-
Confidence 479999999999999999884 56789999999999977643 355 5778888888776 88999999998876
Q ss_pred cccccCH--------HHHHHHHHhcccCCeEEEEEe
Q 005959 328 VDWDQKD--------GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 328 l~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
..|.... ..+|.+++|+|||||.|++.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5554332 479999999999999999975
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=3.1e-11 Score=121.47 Aligned_cols=134 Identities=16% Similarity=0.068 Sum_probs=87.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CC--c---------------------------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LP--A--------------------------- 301 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~--~--------------------------- 301 (667)
.+.+|||||||+|.++...+... ...|+++|.|+.|++.+++.- .. .
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 56899999999998876666554 346999999999999887531 00 0
Q ss_pred ----eEEeeccc------CCCCCCCCccEEEecccccccccC---HHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhH-
Q 005959 302 ----MIGSFASK------QLPYPSLSFDMLHCARCGVDWDQK---DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK- 367 (667)
Q Consensus 302 ----~~~~~da~------~Lpfpd~sFDlV~~s~~ll~~~~d---~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~- 367 (667)
.+...|+. ..+++.++||+|+|.+++.+..++ ..++++++.++|||||+|++.++...........
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~ 211 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 211 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcc
Confidence 01112221 233556789999999996565544 4579999999999999999988754321110000
Q ss_pred --HHHhhhhhhhhhhhccceEEe
Q 005959 368 --ENQKRWNFVRDFVENLCWELV 388 (667)
Q Consensus 368 --e~~~~W~~ie~l~~~~~W~ll 388 (667)
...-..+.++...+..+++.+
T Consensus 212 ~~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 212 LTVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeEE
Confidence 001123455666666677654
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.13 E-value=1e-10 Score=113.93 Aligned_cols=99 Identities=16% Similarity=0.260 Sum_probs=81.3
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CceEEeecccCCC--CCCCCccEEEecccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQLP--YPSLSFDMLHCARCG 327 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~Lp--fpd~sFDlV~~s~~l 327 (667)
..|||||||+|.++..+|+.. +...++|+|+++.++..|.+ .++ ++.+..+++..+. ++++++|.|++.+.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP- 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS- 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-
T ss_pred CeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc-
Confidence 479999999999999999884 56789999999999877654 355 4677888887776 78899999998876
Q ss_pred cccccCH--------HHHHHHHHhcccCCeEEEEEe
Q 005959 328 VDWDQKD--------GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 328 l~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
..|.... ..+|.++.++|||||.|.+.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5554332 579999999999999999865
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=3.1e-11 Score=125.62 Aligned_cols=122 Identities=12% Similarity=0.102 Sum_probs=91.2
Q ss_pred ccccc-chhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----
Q 005959 224 SLIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----- 297 (667)
Q Consensus 224 ~~~yd-~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----- 297 (667)
...|. ........+.+.+.+.++ .+|||||||+|.++..+++.. ....++|+|.++.+++.|++.
T Consensus 129 ~~~~~e~~~~~~~~~~~~~~l~~~--------~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~ 199 (328)
T d1nw3a_ 129 PEVYGETSFDLVAQMIDEIKMTDD--------DLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFR 199 (328)
T ss_dssp TTCCCCCCHHHHHHHHHHSCCCTT--------CEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHHcCCCCC--------CEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 33453 335555666666665554 899999999999999988752 345689999999999887642
Q ss_pred ---------CCCceEEeecccCCCCCCCCc--cEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 298 ---------GLPAMIGSFASKQLPYPSLSF--DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 298 ---------gl~~~~~~~da~~Lpfpd~sF--DlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..++.+.++|+..+++.+..| |+|+++.. . +.++...+|.|+.|+|||||.++...+
T Consensus 200 ~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~~-~-f~~~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 200 KWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNF-A-FGPEVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp HHHHHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEECCT-T-TCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred HHhhhccccCCceEEEECcccccccccccCcceEEEEcce-e-cchHHHHHHHHHHHhCCCCcEEEEecc
Confidence 235678899999998877666 56666533 3 456778899999999999999998654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.13 E-value=8.1e-11 Score=118.13 Aligned_cols=101 Identities=23% Similarity=0.342 Sum_probs=77.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
..++|||||||+|.++..++++. +...++++|. +.+++.++++ +.. +.+...+... +.+ ..||+|++.++
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~v 156 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFV 156 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESC
T ss_pred cCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhcccc
Confidence 45799999999999999999884 5677899997 6777766543 433 4455555432 444 46999999999
Q ss_pred ccccccCH-HHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+++|.++. .++|++++++|||||.|+|.++.
T Consensus 157 Lh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 157 LLNWSDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 77775332 46899999999999999999864
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.11 E-value=5.9e-11 Score=119.29 Aligned_cols=98 Identities=11% Similarity=0.114 Sum_probs=79.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+.+|||+|||+|.++..|++.-.....|+++|.++.+++.|+++ + .++.+...|.... +++++||+|++.
T Consensus 86 G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld--- 161 (250)
T d1yb2a1 86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD--- 161 (250)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC---
T ss_pred cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec---
Confidence 38999999999999999997622446799999999999999864 1 2456677777665 567899999864
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+++..++.++.++|||||+|++..|..
T Consensus 162 ---~p~p~~~l~~~~~~LKpGG~lv~~~P~i 189 (250)
T d1yb2a1 162 ---IPDPWNHVQKIASMMKPGSVATFYLPNF 189 (250)
T ss_dssp ---CSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred ---CCchHHHHHHHHHhcCCCceEEEEeCCc
Confidence 2456679999999999999999988853
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.10 E-value=1.5e-10 Score=120.02 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+.+|||||||+|.++..++++|. ..|+++|.++ +++.|+ +.+. .+.+..+++..+++++++||+|++....
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga--~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC--CEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 37999999999999999999874 3689999996 444443 3343 4567888999999999999999997553
Q ss_pred ccc--ccCHHHHHHHHHhcccCCeEEE
Q 005959 328 VDW--DQKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 328 l~~--~~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
... ......++.++.|+|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 322 2445678999999999999986
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.4e-10 Score=114.53 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=76.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C------CCceEEeecccCCCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G------LPAMIGSFASKQLPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g------l~~~~~~~da~~Lpfpd~sFDlV~ 322 (667)
++.+|||||||+|..+..|++.......|+++|.++++++.|+++ + ....+..+|....++++++||+|+
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~ 155 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 155 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhh
Confidence 348999999999999999987633445799999999999888643 2 245567788888888888999999
Q ss_pred ecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+..+ .+..+ .++.+.|||||++++...
T Consensus 156 ~~~~-~~~ip------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 156 VGAA-APVVP------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp ECSB-BSSCC------HHHHHTEEEEEEEEEEES
T ss_pred hhcc-hhhcC------HHHHhhcCCCcEEEEEEc
Confidence 9977 33332 357889999999998654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.9e-10 Score=116.78 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=76.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH---HHcCC--CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT---LERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A---~ergl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..+++.|. ..|+++|.|+.+...+ ++.+. .+.+..+++..+++++++||+|+|.....
T Consensus 36 ~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 36 DKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 113 (311)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred cCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence 47899999999999999999874 3689999999886433 23333 45678889999999999999999975533
Q ss_pred ccc--cCHHHHHHHHHhcccCCeEEEE
Q 005959 329 DWD--QKDGILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 329 ~~~--~d~~~~L~Ei~RvLKPGG~Lvi 353 (667)
+.. ...+.++....++|||||+++-
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccHHHHHHHHhcCCCCcEEec
Confidence 322 2235678888999999999973
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.02 E-value=3.5e-10 Score=111.91 Aligned_cols=105 Identities=16% Similarity=0.073 Sum_probs=77.8
Q ss_pred ccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeeccc---CCCCCCCCccEEE
Q 005959 249 FILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK---QLPYPSLSFDMLH 322 (667)
Q Consensus 249 l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~---~Lpfpd~sFDlV~ 322 (667)
+...++.+|||+|||+|.++.+|++.--....|+++|+++.|++.++++. .+......++. ..+.....+|+|+
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~ 148 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEE
Confidence 33456789999999999999999987224567999999999998886542 22333444442 2334456899998
Q ss_pred ecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+. ++..++...++.++.+.|||||+++++..
T Consensus 149 ~d---~~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 149 ED---VAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EC---CCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EE---ccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 75 33345567899999999999999999864
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=3.2e-10 Score=116.97 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=75.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH---HHHcCC--CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL---TLERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~---A~ergl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
+++|||||||+|.++..+++.|. ..|+++|.++.+... ++..+. .+.+..+++..++++.++||+|++.....
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga--~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCC--CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 47899999999999999999874 358999999755422 233444 36678889999999999999999975533
Q ss_pred ccc--cCHHHHHHHHHhcccCCeEEE
Q 005959 329 DWD--QKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 329 ~~~--~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
... ...+.++..+.|+|||||.++
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 222 345789999999999999987
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=7.4e-10 Score=112.05 Aligned_cols=108 Identities=23% Similarity=0.213 Sum_probs=82.9
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeeccc
Q 005959 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 309 (667)
Q Consensus 236 ~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~ 309 (667)
.+...+.+.++ .+|||+|||+|.++..|++.......|+++|.++.+++.|+++ ++ .+.+...|.
T Consensus 94 ~Ii~~l~i~pG--------~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~- 164 (266)
T d1o54a_ 94 FIAMMLDVKEG--------DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI- 164 (266)
T ss_dssp HHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-
T ss_pred HHHHhhCCCCC--------CEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc-
Confidence 45666666665 8999999999999999998744556799999999999998764 33 223333343
Q ss_pred CCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 310 QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 310 ~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
...++...||.|+.. .+++..++.++.++|||||.+++..|..
T Consensus 165 ~~~~~~~~~D~V~~d------~p~p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 165 SEGFDEKDVDALFLD------VPDPWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp GGCCSCCSEEEEEEC------CSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred cccccccceeeeEec------CCCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 234667789998743 3567789999999999999999988854
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.96 E-value=1e-09 Score=108.31 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=78.8
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCceEEeeccc
Q 005959 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASK 309 (667)
Q Consensus 233 y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~ 309 (667)
....+.+.+.+.++ .+|||||||+|.+|..|++.+ ..|+++|.++.+++.|+++ ..++.+..+|..
T Consensus 58 ~~a~ml~~L~l~~g--------~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~ 126 (224)
T d1vbfa_ 58 LGIFMLDELDLHKG--------QKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGT 126 (224)
T ss_dssp HHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGG
T ss_pred hHHHHHHHhhhccc--------ceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCchh
Confidence 33455666666555 899999999999999999874 4689999999999988765 345667777765
Q ss_pred CCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 310 QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 310 ~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
....+.++||+|++..+. +..+ ..+.+.|||||+|++-.
T Consensus 127 ~g~~~~~pfD~Iiv~~a~-~~ip------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 127 LGYEEEKPYDRVVVWATA-PTLL------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp GCCGGGCCEEEEEESSBB-SSCC------HHHHHTEEEEEEEEEEE
T ss_pred hcchhhhhHHHHHhhcch-hhhh------HHHHHhcCCCCEEEEEE
Confidence 544456789999998763 3332 24567899999999853
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.1e-09 Score=113.61 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=80.9
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------------C
Q 005959 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------------L 299 (667)
Q Consensus 236 ~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------------l 299 (667)
.+..++.+.++ .+|||+|||+|.++..|++.-.....|+++|.++.+++.|+++- .
T Consensus 89 ~Il~~l~i~pG--------~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~ 160 (324)
T d2b25a1 89 MILSMMDINPG--------DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD 160 (324)
T ss_dssp HHHHHHTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred HHHHHhCCCCC--------CEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 55666666666 89999999999999999986334567999999999999887531 2
Q ss_pred CceEEeecccCCC--CCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 300 PAMIGSFASKQLP--YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 300 ~~~~~~~da~~Lp--fpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++.+...|+.... +++.+||.|+.- + +++..++.++.++|||||.|++..|+.
T Consensus 161 nv~~~~~di~~~~~~~~~~~fD~V~LD-----~-p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 161 NVDFIHKDISGATEDIKSLTFDAVALD-----M-LNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp CEEEEESCTTCCC-------EEEEEEC-----S-SSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred ceeEEecchhhcccccCCCCcceEeec-----C-cCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 3456666665553 466789999863 2 455579999999999999999988864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=1.1e-09 Score=116.73 Aligned_cols=122 Identities=11% Similarity=0.091 Sum_probs=84.9
Q ss_pred ccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----
Q 005959 225 LIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----- 298 (667)
Q Consensus 225 ~~y-d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----- 298 (667)
..| +-...++..+.+.+.+.++ .++||||||+|.++..++... ....++|+|+++.|++.|+++.
T Consensus 195 ~vYGEl~~~~i~~Il~~l~Lkpg--------d~fLDLGCG~G~~vl~aA~~~-g~~~v~GIDiS~~~i~~Ak~~~~e~~~ 265 (406)
T d1u2za_ 195 YVYGELLPNFLSDVYQQCQLKKG--------DTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKK 265 (406)
T ss_dssp GCCCCBCHHHHHHHHHHTTCCTT--------CEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHhCCCCC--------CEEEeCCCCCcHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHHhh
Confidence 456 3346677778888777666 899999999999999998762 2346899999999999887542
Q ss_pred ------CC---ceE-EeecccCCCCCC---CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 299 ------LP---AMI-GSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 299 ------l~---~~~-~~~da~~Lpfpd---~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.. ..+ ...+....++.+ ..+|+|+++. +++.++...+|.++.|+|||||.++.++..
T Consensus 266 ~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn--~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~ 335 (406)
T d1u2za_ 266 RCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN--FLFDEDLNKKVEKILQTAKVGCKIISLKSL 335 (406)
T ss_dssp HHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC--TTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred hhhhhccccccceeeeeechhhccccccccccceEEEEec--ccCchHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 11 111 122222222111 2467888764 345567788999999999999999987643
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.68 E-value=1.6e-08 Score=99.41 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCchHHHHHhhc----C-CceeEEEEecCCHHHHHHHHHc----------CCCceEEeecccCCCCCCCCc
Q 005959 254 VRTILDIGCGYGSFGAHLFSK----E-LLTMCIANYEASGSQVQLTLER----------GLPAMIGSFASKQLPYPSLSF 318 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~----g-~~~~sV~gvD~S~~ml~~A~er----------gl~~~~~~~da~~Lpfpd~sF 318 (667)
..+|||||||+|.+++.|++. | .....|+++|.++++++.|+++ ..++.+..+|......+.+.|
T Consensus 81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~f 160 (223)
T d1r18a_ 81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPY 160 (223)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSE
T ss_pred CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccce
Confidence 489999999999999988765 1 1224689999999999888654 125667778877776677899
Q ss_pred cEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 319 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 319 DlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|.|++..+ ....+ ..+.+.|||||++++-..
T Consensus 161 D~Iiv~~a-~~~~p------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 161 NAIHVGAA-APDTP------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp EEEEECSC-BSSCC------HHHHHTEEEEEEEEEEES
T ss_pred eeEEEEee-chhch------HHHHHhcCCCcEEEEEEe
Confidence 99999876 33222 246789999999988543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.65 E-value=3e-08 Score=97.04 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~ 305 (667)
......+.+.+...++ .+|||||||+|..++.|++.- ...|+++|.++.+++.|+++ + .++.+..
T Consensus 64 P~~~a~ml~~L~l~~g--------~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~ 133 (215)
T d1jg1a_ 64 PHMVAIMLEIANLKPG--------MNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVKNVHVIL 133 (215)
T ss_dssp HHHHHHHHHHHTCCTT--------CCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred hhhHHHHHHhhccCcc--------ceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCceeEEEE
Confidence 3344566777776665 899999999999999998761 13488999999999888754 3 3567788
Q ss_pred ecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+|......+.+.||.|++..+ .... +. .+...|+|||++++-.
T Consensus 134 gd~~~g~~~~~pfD~Iiv~~a-~~~i--p~----~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 134 GDGSKGFPPKAPYDVIIVTAG-APKI--PE----PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp SCGGGCCGGGCCEEEEEECSB-BSSC--CH----HHHHTEEEEEEEEEEE
T ss_pred CccccCCcccCcceeEEeecc-cccC--CH----HHHHhcCCCCEEEEEE
Confidence 887776666789999999866 3333 22 3556799999999854
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=6.4e-08 Score=97.97 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=76.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
...+|||+|||+|..+..++... +...|+++|+|+.+++.|+++ ++ ++.+...|... ++++++||+|+|+--.
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY 185 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred cccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence 45689999999999999998763 567899999999999888754 45 46677776543 4567799999998432
Q ss_pred cc------------ccc------------CHHHHHHHHHhcccCCeEEEEEe
Q 005959 328 VD------------WDQ------------KDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 328 l~------------~~~------------d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+. +.+ ...+++.+..+.|+|||.+++..
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi 237 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 237 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 100 11357889999999999999954
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.53 E-value=2.4e-07 Score=88.55 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=68.8
Q ss_pred CCCEEEEeCCCCch----HHHHHhhc---CCceeEEEEecCCHHHHHHHHHc--------CCCc----------------
Q 005959 253 GVRTILDIGCGYGS----FGAHLFSK---ELLTMCIANYEASGSQVQLTLER--------GLPA---------------- 301 (667)
Q Consensus 253 ~~~~VLDIGCGtG~----~t~~La~~---g~~~~sV~gvD~S~~ml~~A~er--------gl~~---------------- 301 (667)
..-+|+++|||+|. ++..+.+. ......|++.|+++.+++.|++. +++.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 34689999999997 33334332 11246799999999999988742 1110
Q ss_pred ------------eEEeeccc-CCCCCCCCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEE
Q 005959 302 ------------MIGSFASK-QLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 302 ------------~~~~~da~-~Lpfpd~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis 354 (667)
.+...+.. ..+.+.+.||+|+|.++++++.++. .++++.+++.|+|||+|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01111111 1223457899999999977665333 57999999999999999885
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.52 E-value=1.7e-07 Score=90.29 Aligned_cols=69 Identities=10% Similarity=0.141 Sum_probs=59.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+.+|||+|||+|.++..++..|. ..|+++|.++.+++.|+++...+.+.+.|+..++ +.||+|+++--
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCcc
Confidence 458999999999999988888763 4699999999999999988777888888887764 68999999843
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.49 E-value=1.1e-07 Score=98.11 Aligned_cols=102 Identities=19% Similarity=0.130 Sum_probs=75.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC----CCCCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----Lpfpd~sFDlV~~s 324 (667)
+.+|||++||+|.++..++.. ..+|+++|.|+.+++.|+++ |+ +..+..+|+.. ++...++||+|++.
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 479999999999999998754 46799999999999888754 55 45667776544 34456799999986
Q ss_pred ccccccc--------cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 325 RCGVDWD--------QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 325 ~~ll~~~--------~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.-..... .+...++..+.++|||||.|+++....
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 3212111 122357889999999999999987644
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.49 E-value=1.5e-08 Score=96.67 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=70.4
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCCCCccccccccCccccccCCC
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 596 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~ 596 (667)
.|||+|||+|.|+..|.. + +-+|-. ..+.++-+|++ -++....+.++..+.+||+|+|..++.+..
T Consensus 39 ~vLDiGcG~G~~~~~~~~----~-----~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~--- 105 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI----K-----IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD--- 105 (208)
T ss_dssp CEEEETCTTSTTHHHHTC----C-----EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---
T ss_pred eEEEECCCCcccccccce----E-----EEEeCChhhccccccccc-cccccccccccccccccccccccccccccc---
Confidence 599999999999999853 2 234544 77888888875 345566677777679999999999988875
Q ss_pred CCCCcchhheeccccccCCcEEEEEc
Q 005959 597 HRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 597 ~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+...+|-|+-|+|+|||++++.+
T Consensus 106 ---d~~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 106 ---DPERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---ccccchhhhhhcCCCCceEEEEe
Confidence 25678999999999999999863
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.46 E-value=3.1e-07 Score=92.05 Aligned_cols=96 Identities=9% Similarity=0.114 Sum_probs=75.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+.+|||+|||+|.++..+++++ ...|+++|.++.+++.++++ ++. +.+.++|+..++. .+.||.|++...
T Consensus 108 g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p- 183 (260)
T d2frna1 108 DELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV- 183 (260)
T ss_dssp TCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-
T ss_pred ccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC-
Confidence 4899999999999999999886 34799999999999877643 443 4567788877654 468999987632
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.....++.++.++|+|||++.+....
T Consensus 184 ----~~~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 184 ----VRTHEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ----CchHHHHHHHHhhcCCCCEEEEEecc
Confidence 22346788899999999999876553
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.44 E-value=1.6e-07 Score=97.03 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=76.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC----CCCCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ----LPYPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~----Lpfpd~sFDlV~~ 323 (667)
+.+|||++||+|.++..++..|. .+|+++|.++.+++.|+++ |+ .+.+.++|+.. ++....+||+|++
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 47999999999999999998863 4799999999999887654 54 34566666533 3345679999998
Q ss_pred cccccccc--------cCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 324 ARCGVDWD--------QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 324 s~~ll~~~--------~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
..-...-. .+...++....++|+|||+|+++.....
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 64312111 1123578889999999999999886543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.42 E-value=1.4e-07 Score=93.78 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
..++|||||||+|.++..++++. +...++..|. +..++.+.. .-.+.+..+|... +.| ..|++++..++++|.+
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~~~-~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~d 154 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP-LSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSD 154 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-CTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCH
T ss_pred CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhhccCC-CCCeEEecCCccc-ccc--cceEEEEehhhhhCCH
Confidence 45899999999999999999884 5677888997 444433221 1245566666532 444 3599999999888764
Q ss_pred CH-HHHHHHHHhcccCCeEEEEEeCC
Q 005959 333 KD-GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 333 d~-~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+. .++|+++++.|+|||.+++.+..
T Consensus 155 e~~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 155 EKCIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 43 47999999999999999999864
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.41 E-value=2.9e-07 Score=86.41 Aligned_cols=98 Identities=21% Similarity=0.213 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccC----CCCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQ----LPYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~----Lpfpd~sFDlV~~s 324 (667)
.+.+|||+|||+|.++..++.+|. .++++|.++.+++.+++. ++...+...+... ......+||+|++.
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga---~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeccccchhhhhhhhccc---hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 347999999999999999988874 467899999999877643 5655555444332 23455789999987
Q ss_pred ccccccccCHHHHHHHH--HhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei--~RvLKPGG~Lvis~p 356 (667)
-- ++. +....+.++ ..+|+|||++++..+
T Consensus 118 PP-Y~~--~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 118 PP-YAM--DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CC-TTS--CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cc-ccc--CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 43 222 222334443 357999999998654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=3.3e-07 Score=87.86 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=86.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEee
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSF 306 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~ 306 (667)
.-+.+++.+.+...++ ..+||++||+|.++..++++. +...++++|.++.|++.|+++ +..+.+..+
T Consensus 9 pVll~evi~~l~~~~~--------~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~ 79 (192)
T d1m6ya2 9 PVMVREVIEFLKPEDE--------KIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKV 79 (192)
T ss_dssp CTTHHHHHHHHCCCTT--------CEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEEC
T ss_pred chHHHHHHHhhCCCCC--------CEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccccccccchhH
Confidence 3345566677665544 799999999999999999874 457899999999999999876 334566666
Q ss_pred cccCCC-----CCCCCccEEEecccc--ccc------ccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 307 ASKQLP-----YPSLSFDMLHCARCG--VDW------DQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 307 da~~Lp-----fpd~sFDlV~~s~~l--l~~------~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+..++. +..++||.|+.-... ++. .......|..+.++|+|||.+++..+.
T Consensus 80 ~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 80 SYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp CGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 655542 446789999865331 111 122346899999999999999998763
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.34 E-value=2.9e-07 Score=84.60 Aligned_cols=100 Identities=10% Similarity=0.095 Sum_probs=72.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccC-CCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~-Lpfpd~sFDlV~~s~ 325 (667)
.+.+|||+|||+|.++..++.+|. .+|+++|.++.+++.+++. ++. ..+..+|+.. +....++||+|++..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 357999999999999999988875 4799999999999877654 332 4566666655 345678999999863
Q ss_pred cccccccCHHHHHHHH--HhcccCCeEEEEEeC
Q 005959 326 CGVDWDQKDGILLLEV--DRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei--~RvLKPGG~Lvis~p 356 (667)
- +. .......+..+ .++|+|||.+++...
T Consensus 92 P-y~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 92 P-YA-KETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp S-SH-HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred h-hc-cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 2 11 11223455554 367999999998654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.34 E-value=6.2e-08 Score=93.38 Aligned_cols=94 Identities=21% Similarity=0.210 Sum_probs=63.2
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hcccc--cccccccccCCCCCCCccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.|||+|||.|.|+-+|.+.... |+-+|-. +.+..+ -+.|+ +-.++.=.+.+|.=+.+||+|+|..++.
T Consensus 18 rVLDiGcG~G~~~~~l~~~~~~-----v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~ 92 (231)
T d1vl5a_ 18 EVLDVATGGGHVANAFAPFVKK-----VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH 92 (231)
T ss_dssp EEEEETCTTCHHHHHHGGGSSE-----EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred EEEEecccCcHHHHHHHHhCCE-----EEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccc
Confidence 6999999999999999875433 3333332 444333 22343 2233222344442238999999999887
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.. +...+|-|+.|+|+|||++++.+
T Consensus 93 ~~~------d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 93 HFP------NPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp GCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 664 35578999999999999999864
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.28 E-value=8.1e-08 Score=96.34 Aligned_cols=95 Identities=24% Similarity=0.365 Sum_probs=64.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc---ccc-cccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVL-HDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli---g~~-~~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|+++..|.+. ... +|+-+|-. .++..+-+ .|+- -+. .|+++ +|.=+.+||+|.+..
T Consensus 69 ~~vLDiGcG~G~~~~~la~~-~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~-l~~~~~sfD~V~~~~ 143 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRK-FGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-IPCEDNSYDFIWSQD 143 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-CSSCTTCEEEEEEES
T ss_pred CEEEEeCCCCcHHHhhhhcc-CCc---EEEEEeccchhhhhhhccccccccccccccccccccc-ccccccccchhhccc
Confidence 48999999999999999863 122 33344433 45544443 3542 222 33332 343248999999999
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+|.+.. +...+|-|+.|+|||||.+++.|
T Consensus 144 ~l~h~~------d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 144 AFLHSP------DKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp CGGGCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcc------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 887764 24578999999999999999863
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.27 E-value=1.8e-06 Score=83.04 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=55.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+.+|||+|||+|.++..++.+|. ..|+++|+++.+++.++++ +....+...+...+ ++.||+|+++--
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP 118 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPP 118 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCc
Confidence 347999999999999999888863 4689999999999988764 55667777776654 467999999854
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.24 E-value=6.2e-07 Score=92.32 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccC----CCCCCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ----LPYPSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~----Lpfpd~sFDlV~ 322 (667)
+++|||+.||+|.++..++..| ..+|+++|.|+.+++.++++ ++ ...+..+|+.. +.-..+.||+|+
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 4799999999999999988775 34689999999999887654 44 34567777632 223456899999
Q ss_pred eccccc--------ccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGV--------DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll--------~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+.--.+ ....+...++..+.++|+|||.|+++....
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 852211 111233468889999999999999988654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.22 E-value=2.3e-07 Score=90.17 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=65.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cccccccccCCCCCCCccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
-|||+|||.|.++..|.+... +|+-+|-. +.|..+-+ +|+ +-.+..=.+.+|.=..+||+|.|.+++.
T Consensus 19 rILDiGcGtG~~~~~la~~~~-----~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 93 (234)
T d1xxla_ 19 RVLDIGAGAGHTALAFSPYVQ-----ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH 93 (234)
T ss_dssp EEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred EEEEeCCcCcHHHHHHHHhCC-----eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceee
Confidence 489999999999999987422 45555654 55655433 443 2223322233442238999999998887
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
... +...+|=|+.|+|+|||++++.+
T Consensus 94 ~~~------d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 94 HFS------DVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp GCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc------CHHHHHHHHHHeeCCCcEEEEEE
Confidence 653 36689999999999999999853
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.21 E-value=1.6e-07 Score=95.09 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=71.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhh----HhcccccccccccccCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~----~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
-.|||+|||.|+|+..+.+. .++-|.-|.... +|+.. +.+.|+......-+.-+...|.+||.|-+..+|.+.
T Consensus 54 ~~VLDiGCG~G~~a~~~a~~-~g~~v~gi~ls~--~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh~ 130 (280)
T d2fk8a1 54 MTLLDIGCGWGTTMRRAVER-FDVNVIGLTLSK--NQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHF 130 (280)
T ss_dssp CEEEEESCTTSHHHHHHHHH-HCCEEEEEESCH--HHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CEEEEecCCchHHHHHHHHh-CceeEEEecchH--HHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHHh
Confidence 36999999999999998863 354443333322 44443 455687665555555566667899999999999876
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
. + -....++-++.|+|+|||.++|++
T Consensus 131 ~---~-~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 131 G---H-ENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp C---G-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred h---h-hhHHHHHHHHHhccCCCceEEEEE
Confidence 4 2 245678999999999999999863
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=3.4e-07 Score=89.67 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=66.8
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcc----ccc----ccccccccCCCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR----GFV----GVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~R----Gli----g~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.|||+|||.|+++.+|.+. .++-|.-|=|. +.++..+-++ |+- -+..|+.+.++ +.+||+|+|.+++
T Consensus 36 ~VLDiGCG~G~~~~~la~~-~~~~v~GvD~s--~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~ 110 (245)
T d1nkva_ 36 RILDLGSGSGEMLCTWARD-HGITGTGIDMS--SLFTAQAKRRAEELGVSERVHFIHNDAAGYVA--NEKCDVAACVGAT 110 (245)
T ss_dssp EEEEETCTTCHHHHHHHHH-TCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--SSCEEEEEEESCG
T ss_pred EEEEEcCCCCHHHHHHHHh-cCCEEEEEecc--cchhhHHHHHHHHhhccccchhhhhHHhhccc--cCceeEEEEEehh
Confidence 6999999999999999862 45555444331 2455444443 642 23445555443 5899999999988
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.+.. +...+|-||-|+|||||.+++.+
T Consensus 111 ~~~~------d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 111 WIAG------GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp GGTS------SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hccC------CHHHHHHHHHHHcCcCcEEEEEe
Confidence 7664 35679999999999999999964
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.19 E-value=1.5e-06 Score=84.47 Aligned_cols=102 Identities=22% Similarity=0.217 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC-C-----CCCCCccE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFDM 320 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-p-----fpd~sFDl 320 (667)
.+++|||||||+|..|..|++.--....++++|.++.+++.|++. |+ .+.+..+++..+ + +..++||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 358999999999999999987632346799999999999888643 54 345666665432 2 45578999
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+.-.. .. .......+.+..++|||||++++.+.
T Consensus 136 ifiD~~-~~-~~~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 136 VFLDHW-KD-RYLPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp EEECSC-GG-GHHHHHHHHHHTTCEEEEEEEEESCC
T ss_pred eeeccc-cc-ccccHHHHHHHhCccCCCcEEEEeCc
Confidence 997632 11 11122467788899999998877654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.18 E-value=1.4e-06 Score=86.39 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..++++. +..+++..|. +..++.+.. .-.+.+..+|... +.+ .+|++++..++++|.+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~~~-~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d 153 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG-SNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTD 153 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-BTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCH
T ss_pred CceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHHhCcc-cCceEEEecCccc-CCC--CCcEEEEEeecccCCh
Confidence 45789999999999999999884 5568899998 445544432 2356677677643 333 5899999999888864
Q ss_pred CH-HHHHHHHHhcccCC---eEEEEEeCCC
Q 005959 333 KD-GILLLEVDRVLKPG---GYFVWTSPLT 358 (667)
Q Consensus 333 d~-~~~L~Ei~RvLKPG---G~Lvis~p~~ 358 (667)
+. .++|+.+++.|+|| |.+++.+...
T Consensus 154 ~~~~~iL~~~~~al~pgg~~~~lli~e~~~ 183 (244)
T d1fp2a2 154 KDCLRILKKCKEAVTNDGKRGKVTIIDMVI 183 (244)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred HHHHHHHHHHHHHcCcccCCcEEEEEEeec
Confidence 44 47999999999998 7788887643
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.16 E-value=2.7e-06 Score=87.11 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=72.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCC----CCCCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL----PYPSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~L----pfpd~sFDlV~ 322 (667)
+.+|||+.||+|.++..++..|. +|+++|.|+.+++.|+++ ++ .+.+.+.|+... ....+.||+|+
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 47999999999999999998863 589999999999988764 43 356777775432 12357899999
Q ss_pred eccccc-------cc--ccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 323 CARCGV-------DW--DQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll-------~~--~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.--.+ .+ ..+...++..+.++|+|||.+++...
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 852211 11 12234577788899999997666654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=5.8e-07 Score=86.79 Aligned_cols=121 Identities=19% Similarity=0.228 Sum_probs=79.3
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--ccccc-ccccCCCCCCCccccccccC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVLH-DWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig~~~-~~c~~f~typ~tyDl~H~~~ 587 (667)
-..|||+|||.|.++..|++. ..- .|+-+|-. +.|..+-++ |. +-.++ |. +.++.-+.+||+|.+..
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~-~~~---~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~-~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLP-LFR---EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTT-TCS---EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEES
T ss_pred CCEEEEeccCCCHhhHHHHHh-cCC---EEEEeecCHHHhhccccccccccccccccccccc-ccccccccccccccccc
Confidence 467999999999999998752 221 23333443 555544333 32 11111 22 23443358999999999
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcCH---------------HHHHHHHHHHhhCCCeeEEee
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------RLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------------~~~~~~~~~~~~~~W~~~~~~ 645 (667)
++.+.. +. .+..+|-|+=|+|+|||++++.|.. ...++++++.+.--++++-.+
T Consensus 136 ~l~h~~---~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 136 VIGHLT---DQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp CGGGSC---HH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred ccccch---hh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 988764 21 2446899999999999999986321 136778888888888776554
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=3e-06 Score=82.60 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CC-----CCCCCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-----YPSLSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lp-----fpd~sFDlV 321 (667)
+++|||||||+|..+..+++.-.....++.+|.++...+.|++. |. .+.+..+++.. ++ ...++||+|
T Consensus 60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i 139 (219)
T d2avda1 60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 139 (219)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence 58999999999999999997633346799999999998888654 43 34455555432 21 235789999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+...- .......+..+.+.|+|||.+++.+..
T Consensus 140 fiD~d----k~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 140 VVDAD----KENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp EECSC----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred EEeCC----HHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 97632 345567889999999999999997653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.07 E-value=8e-07 Score=86.05 Aligned_cols=92 Identities=21% Similarity=0.330 Sum_probs=62.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcc---cccccccccccCCCCCCCccccccccCccccccC
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR---GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 594 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~R---Glig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~ 594 (667)
+|||+|||.|.|+..|.+....|..+...| +.+..+-+| ++-=+..+. +.++. |.+||+|.|.++|.+..
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~~v~giD~s~----~~i~~a~~~~~~~~~~~~~~~-~~~~~-~~~fD~I~~~~vleh~~- 95 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFNDITCVEASE----EAISHAQGRLKDGITYIHSRF-EDAQL-PRRYDNIVLTHVLEHID- 95 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCSCEEEEESCH----HHHHHHHHHSCSCEEEEESCG-GGCCC-SSCEEEEEEESCGGGCS-
T ss_pred cEEEEeCCCcHHHHHHHHcCCeEEEEeCcH----HHhhhhhcccccccccccccc-ccccc-ccccccccccceeEecC-
Confidence 599999999999999987555555444322 344444333 221122233 23332 68999999999998765
Q ss_pred CCCCCCcchhheec-cccccCCcEEEEE
Q 005959 595 HRHRCSTLDIFTEI-DRILRPEGWVIIR 621 (667)
Q Consensus 595 ~~~~c~~~~~l~E~-dRiLRP~G~~i~~ 621 (667)
+...+|.|+ +|+|+|||++++.
T Consensus 96 -----d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 96 -----DPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp -----SHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -----CHHHHHHHHHHHhcCCCceEEEE
Confidence 234678888 6999999999985
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.06 E-value=1.4e-06 Score=85.99 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
..++|||||||+|.++..++++. +..+++..|..+ .++.+.+ ...+.+...|... +.|. .|+++...++++|.+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~~~~-~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d 154 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPH-VIEDAPS-YPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSD 154 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTT-TTTTCCC-CTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCH
T ss_pred CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHH-hhhhccc-CCceEEecccccc-cCCC--cceEEEEEEeecCCH
Confidence 35799999999999999999884 567888999854 3333222 2345566666532 4443 467777778677763
Q ss_pred C-HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 333 K-DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 333 d-~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+ ...+|+++++.|+|||.+++.+..
T Consensus 155 ~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 155 EHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp HHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 3 357999999999999999998764
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=1.6e-06 Score=86.60 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=59.1
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-cccccccccCCCCCCCccccccccCcccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
-.+|||+|||.|.|..+|.+....+-+ +-+|-. ..+..+-+|.- +.....=.+.+|.-+.+||+|.+...+.
T Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~---~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~--- 158 (268)
T d1p91a_ 85 ATAVLDIGCGEGYYTHAFADALPEITT---FGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC--- 158 (268)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEE---EEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC---
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCEE---EEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH---
Confidence 457999999999999999874323333 333444 56666666642 1111111233443349999999854332
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
-+-||.|+|||||++++..
T Consensus 159 ----------~~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 159 ----------KAEELARVVKPGGWVITAT 177 (268)
T ss_dssp ----------CHHHHHHHEEEEEEEEEEE
T ss_pred ----------HHHHHHHHhCCCcEEEEEe
Confidence 2458999999999999963
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.04 E-value=6.1e-07 Score=88.74 Aligned_cols=102 Identities=24% Similarity=0.343 Sum_probs=68.4
Q ss_pred CCCCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchh----hHhccccccc----ccccccCCCCCCCcccc
Q 005959 511 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFVGV----LHDWCEAFPTYPRTYDL 582 (667)
Q Consensus 511 ~~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~----~~~~RGlig~----~~~~c~~f~typ~tyDl 582 (667)
+++...+.|||+|||.|.++.+|.+..-.+-+.- .|-+..+. .+-+.|+..- -+|. |...|..||+
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~---~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~---~~~~~~~~D~ 149 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATV---LEMAGTVDTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADA 149 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE---EECTTHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEE
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEE---ccCHHHHHHHHHHHHHhhcccchhhccccc---hhhcccchhh
Confidence 3467789999999999999999997422232221 12223333 3334565322 2333 3445678999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
|.+..++..+. +. ....+|-|+=|.|+|||.++|.|
T Consensus 150 v~~~~vlh~~~---d~-~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 150 IILSFVLLNWP---DH-DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp EEEESCGGGSC---HH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeccccccCC---ch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 99999998875 21 23368999999999999999864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.00 E-value=9.5e-07 Score=85.09 Aligned_cols=93 Identities=28% Similarity=0.370 Sum_probs=65.6
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccc-cccccccCCCCCCCcccccccc-CccccccC
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVG-VLHDWCEAFPTYPRTYDLVHAE-GLLSLESG 594 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig-~~~~~c~~f~typ~tyDl~H~~-~~~~~~~~ 594 (667)
.|||+|||.|.++-.|.+.+. .|+=+|-. ..+..+-++|..- +..+- +.+|.-+.+||+|-|. .++.+..
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~-----~v~giD~s~~~l~~a~~~~~~~~~~~~~-~~l~~~~~~fD~ii~~~~~~~~~~- 117 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGF-----EVVLVDPSKEMLEVAREKGVKNVVEAKA-EDLPFPSGAFEAVLALGDVLSYVE- 117 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTC-----EEEEEESCHHHHHHHHHHTCSCEEECCT-TSCCSCTTCEEEEEECSSHHHHCS-
T ss_pred EEEEECCCCchhcccccccce-----EEEEeecccccccccccccccccccccc-cccccccccccceeeecchhhhhh-
Confidence 489999999999999987322 34444554 7788888888532 22222 3354334899999875 4555443
Q ss_pred CCCCCCcchhheeccccccCCcEEEEEc
Q 005959 595 HRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+...+|-|+-|+|+|||.+++..
T Consensus 118 -----d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 118 -----NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp -----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----hHHHHHHHHHhhcCcCcEEEEEE
Confidence 23457889999999999999964
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.96 E-value=1.2e-05 Score=80.88 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------------CCceEEeecccCCCCCCCC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQLPYPSLS 317 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------------l~~~~~~~da~~Lpfpd~s 317 (667)
.+++||.||+|.|..+..++++. ..+|+.+|+++.+++.|++-. ..+.+...|+...--.+++
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~--~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCceEEEecCCchHHHHHHHHhC--CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 56899999999999999988774 347899999999999997531 2345665665332223578
Q ss_pred ccEEEecccccccccCH----HHHHHHHHhcccCCeEEEEEeCC
Q 005959 318 FDMLHCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 318 FDlV~~s~~ll~~~~d~----~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
||+|++-.. ....... ..+++.+++.|+|||.+++....
T Consensus 150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 999997532 2221111 46899999999999999986543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=1.9e-05 Score=74.31 Aligned_cols=98 Identities=12% Similarity=0.019 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpfpd~sFDlV~~s~~l 327 (667)
..+|||++||+|.++..++.+|.. .|+.+|.+..+++.+++. +. +..+...|+.. +......||+|++.--
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPP- 120 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP- 120 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred hhhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCc-
Confidence 478999999999999999999854 689999999999877653 22 34455555433 3345678999999754
Q ss_pred cccccCHHHHHHHHHh--cccCCeEEEEEe
Q 005959 328 VDWDQKDGILLLEVDR--VLKPGGYFVWTS 355 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~R--vLKPGG~Lvis~ 355 (667)
+. ......++..+.+ +|+++|.+++..
T Consensus 121 Y~-~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 121 FR-RGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp SS-TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cc-cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 22 1234556666654 699999999864
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=3.6e-05 Score=76.13 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=61.7
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCce--EE
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IG 304 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~--~~ 304 (667)
..|...+.+++..... ......+|||||||+|..+..|+.+. ....++++|+++.+++.|++. ++... +.
T Consensus 42 ~~~~~~i~~l~~~~~~---~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~ 117 (250)
T d2h00a1 42 LNYIHWVEDLIGHQDS---DKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV 117 (250)
T ss_dssp HHHHHHHHHHHCCCCG---GGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHhhhhcc---CccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeee
Confidence 4466666666543221 12344689999999999999998773 457899999999999988754 34332 33
Q ss_pred eecccCC------CCCCCCccEEEeccc
Q 005959 305 SFASKQL------PYPSLSFDMLHCARC 326 (667)
Q Consensus 305 ~~da~~L------pfpd~sFDlV~~s~~ 326 (667)
..+.... ...+++||+|+|+--
T Consensus 118 ~~~~~~~~~~~~~~~~~~~fD~ivsNPP 145 (250)
T d2h00a1 118 KVPQKTLLMDALKEESEIIYDFCMCNPP 145 (250)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECCC
T ss_pred eeccHHhhhhhhhhcccCceeEEEecCc
Confidence 2222211 124568999999865
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=97.93 E-value=1.7e-06 Score=85.79 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=79.3
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCCCccccccccCcc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.-.+|||+|||.|.++..|+...-. +|.-+|.. ..|..+-++ ..+-.++.=-+.|+.=+.+||+|.+..+|
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~----~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl 168 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYA----TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCS----EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCeEEEecccCChhhHHHHhhcCc----eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccc
Confidence 4568999999999999998853111 23333433 444444322 22222211112344335899999999999
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcCH----------------HHHHHHHHHHhhCCCeeEEeeecc
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEIES 648 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~~~ 648 (667)
.++. + -.+..+|-++-|+|+|||+++|.|.. ...++++++.+.--++++.++...
T Consensus 169 ~hl~---d-~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q~ 239 (254)
T d1xtpa_ 169 IYLT---D-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp GGSC---H-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred cccc---h-hhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEeeC
Confidence 8775 2 13456799999999999999997531 124567777776677776655433
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.93 E-value=9.2e-07 Score=84.06 Aligned_cols=97 Identities=23% Similarity=0.249 Sum_probs=65.6
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc-cccccccccCCCCCCCccccccccCcccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl-ig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
.|||+|||.|.++..|.+.+. +|+-.|-. +.+..+-++ |. +-..+.=-+.++....+||+|.|..++.+
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~-----~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~ 114 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGF-----EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 114 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCcchhhhhHhhhhc-----ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence 589999999999999987433 34444544 666555443 32 11111111123333489999999999887
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.. ..++..+|-|+-|+|+|||.+++...
T Consensus 115 ~~----~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 115 FE----PLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CC----HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC----hhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 64 13456789999999999999998753
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.5e-06 Score=84.91 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=61.7
Q ss_pred EEEeccccchhhhhhhhhc---CCCeEEEEeecCCCC-CchhhHhcc-----cccccccccc------------cCCCCC
Q 005959 518 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWC------------EAFPTY 576 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~-~~l~~~~~R-----Glig~~~~~c------------~~f~ty 576 (667)
+|||+|||.|.|...|+.. ..+-....++-+|-. ..+..+-+| .+-.+--+|. ++++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 120 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE-- 120 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS--
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC--
Confidence 5999999999998777541 011122334444543 444444433 2222222232 2333
Q ss_pred CCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 577 PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 577 p~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+.+||+|+|.++|.... ++...|-+|-|+|+|||+++|.
T Consensus 121 ~~~fD~I~~~~~l~~~~------d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYYVK------DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CCCEEEEEEESCGGGCS------CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceeEEEEccceecCC------CHHHHHHHHHhhCCCCCEEEEE
Confidence 38999999999988764 3568999999999999998874
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.92 E-value=1.3e-06 Score=88.89 Aligned_cols=101 Identities=11% Similarity=0.133 Sum_probs=70.8
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchh----hHhcccccccccccccCCCCCCCccccccccCcccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~----~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
.|||+|||.||++.+|.+. .++=|..|.... +|+. .+-+.||....+.-+.-+++.+.+||-|=+-+.|.+..
T Consensus 64 ~VLDiGCG~G~~~~~~a~~-~g~~v~git~s~--~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~eH~~ 140 (291)
T d1kpia_ 64 TLLDIGCGWGSTMRHAVAE-YDVNVIGLTLSE--NQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHFA 140 (291)
T ss_dssp EEEEETCTTSHHHHHHHHH-HCCEEEEEESCH--HHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGTT
T ss_pred EEEEecCcchHHHHHHHHh-cCcceeeccchH--HHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHHhcc
Confidence 6999999999999999863 566554443333 4444 34556887666555555666668999988888887754
Q ss_pred CCCCC---CCcchhheeccccccCCcEEEEE
Q 005959 594 GHRHR---CSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 594 ~~~~~---c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
..... -....++=++.|+|+|||.+++.
T Consensus 141 ~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 141 DGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred hhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 11111 12357899999999999999985
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.88 E-value=3.6e-05 Score=78.33 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=74.1
Q ss_pred CCCEEEEeCCCCchHHHHHhh----cCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFS----KELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~----~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s 324 (667)
...+|||.+||+|.++..+.+ +......++|+|+++.+++.|+.. +....+...+... ..+...||+|+++
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~vi~N 195 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISD 195 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccc-ccccccccccccC
Confidence 347899999999999887754 344566899999999999887643 5555555555433 2345689999998
Q ss_pred cccccccc----------------C-HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 325 RCGVDWDQ----------------K-DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 325 ~~ll~~~~----------------d-~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
--...... + ...++..+.+.|+|||++++..|.
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 54211110 0 123688899999999999998874
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=97.88 E-value=1.7e-06 Score=81.83 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=65.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hcccc---cccccccccCCCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGl---ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.|||+|||.|.++-+|.+.+- .|+-+|-. ..|..+ -+.|+ -....|.++..+ +.+||+|.|..+|
T Consensus 33 rvLDiGcG~G~~~~~la~~g~-----~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGY-----DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF--DGEYDFILSTVVM 105 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC--CCCEEEEEEESCG
T ss_pred cEEEECCCCCHHHHHHHHHhh-----hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc--cccccEEEEeeee
Confidence 499999999999999998432 23334433 344432 33444 334455555443 5899999999998
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.+.. .-....+|-++-|+|+|||++++.
T Consensus 106 ~~~~----~~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 106 MFLE----AQTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp GGSC----TTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ecCC----HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8764 234557899999999999999985
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.87 E-value=2.5e-05 Score=73.60 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC----CCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL----PYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L----pfpd~sFDlV~ 322 (667)
.+.+|||+.||+|.++..++.+|. ..|+.+|.++.+++.+++. +. +..+.+.|+... .-....||+|+
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 357999999999999999999985 4689999999999887654 33 345666665432 22456899999
Q ss_pred ecccccccccCHHHHHHHHHh--cccCCeEEEEEeC
Q 005959 323 CARCGVDWDQKDGILLLEVDR--VLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~R--vLKPGG~Lvis~p 356 (667)
+--- +. ..+....+..+.. +|+++|++++...
T Consensus 119 lDPP-Y~-~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 119 LDPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp ECCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred echh-hh-hhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 8743 22 2334567777654 7999999988643
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=4.5e-06 Score=81.27 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=47.6
Q ss_pred CccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH----------------HHHHHHHHHHhhCCCee
Q 005959 578 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDA 641 (667)
Q Consensus 578 ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~ 641 (667)
.+||+|-+..++..... .+-....++-+|-|+|||||++|+.+-. -..+.++++.+.--+++
T Consensus 151 ~~fD~i~~~~~l~~~~~--~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 151 PLADCVLTLLAMECACC--SLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp CCEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CcccEEeehhhHHHhcc--cHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEE
Confidence 79999999888876541 2234556889999999999999996421 13577788888877775
Q ss_pred EEe
Q 005959 642 RVI 644 (667)
Q Consensus 642 ~~~ 644 (667)
.-.
T Consensus 229 ~~~ 231 (257)
T d2a14a1 229 EQL 231 (257)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=97.85 E-value=2.2e-06 Score=84.26 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=68.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----ccc----ccccccc-cCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV----GVLHDWC-EAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gli----g~~~~~c-~~f~typ~tyDl~H~~ 586 (667)
.+|||+|||.|++...+.+.+.. +|+=+|-. ..|..+-+| +.. =...|-. +++. -..+||+|.|.
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~----~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-~~~~fD~V~~~ 100 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIG----EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDVISSQ 100 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS----EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEEEEEE
T ss_pred CEEEEecccCcHHHHHHHHcCCC----eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-ccccceEEEEc
Confidence 47999999999999999874321 34555554 667666655 221 1112221 2222 13689999998
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEE--cCHHHHHHHH
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTARLIESAR 631 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--d~~~~~~~~~ 631 (667)
..+..... ..-.+..+|-||.|+|+|||+||+. |...+++.+.
T Consensus 101 ~~l~~~~~--~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~ 145 (252)
T d1ri5a_ 101 FSFHYAFS--TSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYK 145 (252)
T ss_dssp SCGGGGGS--SHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHH
T ss_pred ceeeecCC--CHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHH
Confidence 77765531 2234557899999999999999975 4334444433
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=2.2e-06 Score=86.87 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=68.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cch-hhHhcccccccccccccCCCCCCCccccccccCccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL-PMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 594 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l-~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~ 594 (667)
..|||+|||.||+|-++.+. .++-|.-|...... ... ..+.+.|+.+-..--+.-+...|-+||-|=+-+.|-+..
T Consensus 64 ~~VLDiGCG~G~~a~~~a~~-~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~eh~~- 141 (285)
T d1kpga_ 64 MTLLDVGCGWGATMMRAVEK-YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHFG- 141 (285)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGGTC-
T ss_pred CEEEEecCcchHHHHHHHhc-CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhhhcC-
Confidence 35999999999999988763 56655555444333 111 245677876655444444555578899888877776643
Q ss_pred CCCCCCcchhheeccccccCCcEEEEE
Q 005959 595 HRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+ =....++-|+.|+|+|||.+++.
T Consensus 142 --~-~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 142 --H-ERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp --T-TTHHHHHHHHHHHSCTTCEEEEE
T ss_pred --c-hhHHHHHHHHHhhcCCCCcEEEE
Confidence 1 22346899999999999999974
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=97.83 E-value=1.9e-06 Score=85.50 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=68.9
Q ss_pred CCCCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchh----hHhcccccccccccc-cCCCCCCCccccccc
Q 005959 511 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFVGVLHDWC-EAFPTYPRTYDLVHA 585 (667)
Q Consensus 511 ~~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~----~~~~RGlig~~~~~c-~~f~typ~tyDl~H~ 585 (667)
+++..++.|||+|||.|.++.+|++. .|=. +++-.|-+..+. .+-+.|+-....-.. ..|...|..||++.+
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~-~P~~--~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~ 153 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALR-APHL--RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 153 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHH-CTTC--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEE
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHh-hcCc--EEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhc
Confidence 34677899999999999999999974 3321 222223232332 233455533211111 223445678999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
..++..|.. . ....+|-++=|.|+|||.++|-|.
T Consensus 154 ~~vLh~~~d--~--~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 154 SFVLLNWSD--E--DALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp ESCGGGSCH--H--HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccccCc--H--HHHHHHHHHHhhcCCcceeEEEEe
Confidence 999988852 2 223578899999999999998754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.83 E-value=3.1e-05 Score=77.66 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCc--eEEeecccC-CCCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPA--MIGSFASKQ-LPYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~--~~~~~da~~-Lpfpd~sFDlV~~s~~ 326 (667)
..+|||+|||+|..+..+++. ....|+++|+|+.+++.|+++ ++.. .+...+... ++...+.||+|+|+--
T Consensus 111 ~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred ccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 468999999999999988865 456799999999999888754 4433 333444322 2233468999999843
Q ss_pred ccc----------cc--------cCHHHHHHH-HHhcccCCeEEEEEeC
Q 005959 327 GVD----------WD--------QKDGILLLE-VDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~----------~~--------~d~~~~L~E-i~RvLKPGG~Lvis~p 356 (667)
.+. +. +|.-.++++ +.+.|+|||++++-..
T Consensus 189 YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 189 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 111 00 111122222 5678999999888654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=97.83 E-value=2.6e-06 Score=82.10 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=75.0
Q ss_pred EEEeccccchhhhhhhhhcC-CCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCC-CccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYP-RTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ-~tyDl~H~~~~~~ 590 (667)
.|||+|||+|..+.+|.+.- .+- .+|+=.|-. ..|..+-++ +....++-.+..+..+| ..+|++.|..++.
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~~~--~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~ 119 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 119 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCCSS--CEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred EEEEeccchhhHHHHHHHhhcCCC--CceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence 69999999999998887521 121 256667765 777776654 67777777777777777 6899999988886
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
... .-+...+|-||-|.|+|||.+|+.|
T Consensus 120 ~~~----~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 120 FLP----PEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GSC----GGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC----hhhHHHHHHHHHHhCCCCceeeccc
Confidence 653 2355579999999999999999975
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=97.82 E-value=4.5e-06 Score=83.68 Aligned_cols=96 Identities=10% Similarity=0.118 Sum_probs=62.0
Q ss_pred eeEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCC-CchhhHhc----cccc-c-cccccccCCCCCCCccccccccC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----RGFV-G-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~~~~----RGli-g-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
-+.|||+|||.|.++..|.+.- ... .|+-+|-. ..+..+-+ .|+- = +..|.. .++ ++.+||+|+|.+
T Consensus 28 ~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~-~~~-~~~~fD~v~~~~ 102 (281)
T d2gh1a1 28 PVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAICHA 102 (281)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEEES
T ss_pred cCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhcccccccccccccccccc-ccc-ccCCceEEEEeh
Confidence 4679999999999998886521 112 22233433 33433322 2331 1 122333 344 468999999999
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++.+.. +...+|-||-|+|+|||++++.+
T Consensus 103 ~l~~~~------d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 103 FLLHMT------TPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp CGGGCS------SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhcCC------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 987764 23478999999999999999865
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.81 E-value=4.4e-06 Score=80.99 Aligned_cols=96 Identities=22% Similarity=0.215 Sum_probs=65.0
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccccc--ccccccCCCCCCCcccccccc-
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGV--LHDWCEAFPTYPRTYDLVHAE- 586 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig~--~~~~c~~f~typ~tyDl~H~~- 586 (667)
..+.|||+|||.|.++..|.+.+. +|+=+|-. +-+-.+-+ +|+-.. .+|. +.++ ++.+||+|.|.
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~-----~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~-~~l~-~~~~fD~I~~~~ 113 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGY-----EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV-LEIA-FKNEFDAVTMFF 113 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG-GGCC-CCSCEEEEEECS
T ss_pred CCCEEEEeCCCCCccchhhcccce-----EEEEEeeccccccccccccccccccchheehhh-hhcc-cccccchHhhhh
Confidence 356899999999999999987432 45555554 55554443 354221 2233 3343 46899999986
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+.|.+.+ .......|-++-|+|+|||++|+.
T Consensus 114 ~~~~~~~----~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 114 STIMYFD----EEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp SGGGGSC----HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhcCC----hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4555442 235567899999999999999984
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.77 E-value=2.9e-05 Score=79.38 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCceEEeecccCC-CCCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQL-PYPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~L-pfpd~sFDlV 321 (667)
.+++||.||.|.|..+..+++.. ...+|+.+|+++.+++.|++.- ..+.+..+|+... .-.++.||+|
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 46899999999999999998763 4568999999999999887541 2345555564332 2235689999
Q ss_pred Eecccccccc-cC------HHHHHHHHHhcccCCeEEEEEeC
Q 005959 322 HCARCGVDWD-QK------DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 322 ~~s~~ll~~~-~d------~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++-.. -.+. .. -..+++.+.+.|+|||++++...
T Consensus 156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 97532 1111 11 14699999999999999998653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=97.74 E-value=4.4e-06 Score=83.17 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=71.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHh----cccccc--cccccccCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGFVG--VLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~----~RGlig--~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
..|||+|||.|.++.++...+..|.-+-+-| .-+..+- ..|+-. +..|.-+.++. .+||+|.|+-+..
T Consensus 122 ~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~----~av~~A~~na~~n~~~~~~~~~d~~~~~~~--~~fD~V~ani~~~ 195 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDP----MVLPQAEANAKRNGVRPRFLEGSLEAALPF--GPFDLLVANLYAE 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCG----GGHHHHHHHHHHTTCCCEEEESCHHHHGGG--CCEEEEEEECCHH
T ss_pred CEEEEcccchhHHHHHHHhcCCEEEEEECCh----HHHHHHHHHHHHcCCceeEEeccccccccc--cccchhhhccccc
Confidence 3799999999999988887544444333322 3333332 234411 12233344443 6899999865444
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCeeEEe
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 644 (667)
... .++=++-|+|+|||++|+++- .+..+.+.+..+...|+....
T Consensus 196 ~l~---------~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 196 LHA---------ALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp HHH---------HHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred cHH---------HHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEE
Confidence 332 566789999999999998752 223456777777777876554
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.72 E-value=3.4e-05 Score=75.77 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=57.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.+|..|++.+ ..++++|.++.+++.++++. .++.+..+|+..++++......|+++.-
T Consensus 21 ~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv~NLP 94 (235)
T d1qama_ 21 EHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGNIP 94 (235)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEEECC
T ss_pred CCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccceeeeeeh
Confidence 34899999999999999999884 45899999999999988764 3467888999888887665556777643
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.72 E-value=1.2e-05 Score=76.39 Aligned_cols=100 Identities=20% Similarity=0.144 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc-
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD- 331 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~- 331 (667)
.+.+|||.|||+|.|+..+.++......+.++|+++..+..+. ...+...+..... ....||+|+++.-.....
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~----~~~~~~~~~~~~~-~~~~fd~ii~npP~~~~~~ 93 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP----WAEGILADFLLWE-PGEAFDLILGNPPYGIVGE 93 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT----TEEEEESCGGGCC-CSSCEEEEEECCCCCCBSC
T ss_pred CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc----cceeeeeehhccc-cccccceecccCccccccc
Confidence 3479999999999999888776445567999999876543322 2344455544433 346899999985421110
Q ss_pred --------------------------c-CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 332 --------------------------Q-KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 332 --------------------------~-d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. -...++....+.|+|||++++..|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 94 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 0 0124677889999999999998874
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.69 E-value=2.8e-05 Score=76.05 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=73.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccC-CC------CCCCCccE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LP------YPSLSFDM 320 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~-Lp------fpd~sFDl 320 (667)
+++|||||+++|..+..|++.-.....++.+|.++...+.|++. |.. +.+..+++.. ++ ...++||+
T Consensus 60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~ 139 (227)
T d1susa1 60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 139 (227)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSE
T ss_pred CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeE
Confidence 58999999999999999997533356789999999988877653 443 4445555422 12 13568999
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+.-. ........+..+.+.|+|||.+++...
T Consensus 140 iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 140 IFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp EEECS----CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred EEecc----chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 99763 235566889999999999999999855
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.64 E-value=3.3e-06 Score=84.83 Aligned_cols=100 Identities=21% Similarity=0.303 Sum_probs=62.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccccc-----c--cccc---cCCCCCCCcc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGV-----L--HDWC---EAFPTYPRTY 580 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig~-----~--~~~c---~~f~typ~ty 580 (667)
.++|||+|||.|.++..|.+.+. +|+-+|-. +-|..+-+ ++.-.. + .+|- ..+| +..+|
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~-----~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f 130 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGF-----SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGF 130 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCE
T ss_pred CCEEEEecCCCcHHHHHHHHcCC-----eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCc
Confidence 56899999999999999998432 45556655 55554433 332211 1 1221 1232 23689
Q ss_pred ccccccC-ccccccCC-CCCCCcchhheeccccccCCcEEEEE
Q 005959 581 DLVHAEG-LLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 581 Dl~H~~~-~~~~~~~~-~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
|+|-|.+ +|.+.... ...-....+|-||-|+|+|||.+|+.
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 9998754 45554310 01122446899999999999999984
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.64 E-value=1.1e-05 Score=79.93 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeec
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA 307 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~d 307 (667)
....+.+.+.+....+ .+|||||||+|.+|..|++.+ ..++++|.++.+++.++++. .++.+..+|
T Consensus 15 ~~ii~kIv~~~~~~~~--------d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D 83 (245)
T d1yuba_ 15 EKVLNQIIKQLNLKET--------DTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQD 83 (245)
T ss_dssp TTTHHHHHHHCCCCSS--------EEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSC
T ss_pred HHHHHHHHHhcCCCCC--------CeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhhccchhhhhhh
Confidence 3445566666654443 799999999999999999985 45899999999988776653 356678889
Q ss_pred ccCCCCCCCCccEEEecccccccc
Q 005959 308 SKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 308 a~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
+..++++...++.|+++.- ++..
T Consensus 84 ~l~~~~~~~~~~~vv~NLP-Y~Is 106 (245)
T d1yuba_ 84 ILQFQFPNKQRYKIVGNIP-YHLS 106 (245)
T ss_dssp CTTTTCCCSSEEEEEEECC-SSSC
T ss_pred hhccccccceeeeEeeeee-hhhh
Confidence 9999998888888888855 5544
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.64 E-value=0.0002 Score=72.24 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=75.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------CCCceEEeecccC-C-CCCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQ-L-PYPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---------gl~~~~~~~da~~-L-pfpd~sFDlV 321 (667)
.+++||-||-|.|..+..+++.. ....++.+|+++.+++.+++- ...+.+...|+.. + ..++++||+|
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 56899999999999999998873 456799999999999998763 2344555555332 2 1345689999
Q ss_pred EecccccccccC----HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 322 ~~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+.-.. -..... ...+++.+++.|+|||.+++....+
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 97532 111111 1469999999999999999987654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.55 E-value=2e-05 Score=75.96 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=59.1
Q ss_pred EEEeccccchhhhhhhhhcC--CCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCCCccccccccCccccccCC
Q 005959 518 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~--~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
.|||+|||.|++..+|.+.- ..|..+-+.|.--..-...+-.|+.+-....=....+.|+..+|.+-+ +|....
T Consensus 59 ~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~--v~~~~~-- 134 (209)
T d1nt2a_ 59 RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDL--IYQDIA-- 134 (209)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEE--EEECCC--
T ss_pred EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEE--EEeccc--
Confidence 89999999999999987621 123333333221111112334456444433334444556666665433 343332
Q ss_pred CCCCCcchhheeccccccCCcEEEEEc
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+......++.|+.|+|+|||++++-+
T Consensus 135 -~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 135 -QKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp -STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 33445578999999999999999864
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=97.53 E-value=4.5e-05 Score=73.20 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=72.5
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cchh----hHhccccccc--c----cccccCCCCCCCcccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGFVGV--L----HDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~----~~~~RGlig~--~----~~~c~~f~typ~tyDl~H~~ 586 (667)
.|||+|||.|.|...|.....+. |++-+|-. +.+. .+-++|+--+ + .+.-+.|+. .++|.|+..
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~---~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~--~~~d~v~i~ 106 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEP--GEVKRVYLN 106 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCT--TSCCEEEEE
T ss_pred eEEEEEecCcHHHHHHHHhCCCC---cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCc--hhhhccccc
Confidence 69999999999999998753333 44555543 3333 3555676211 1 111123443 889988864
Q ss_pred CccccccC-CCCCCCc-chhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhCCC
Q 005959 587 GLLSLESG-HRHRCST-LDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKW 639 (667)
Q Consensus 587 ~~~~~~~~-~~~~c~~-~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W 639 (667)
...-..+. +..+.-+ ..+|-||-|+|+|||.++|+ |..+..+.+.......-.
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~ 162 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL 162 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCC
Confidence 44322221 0122332 36888999999999999875 777777777776665443
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.52 E-value=0.00028 Score=71.30 Aligned_cols=104 Identities=15% Similarity=0.053 Sum_probs=74.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+++||-||.|.|..+..++++. ...+|+.+|+++.+++.|++-. ..+.+...|+.. +.-.++.||+|+
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 56899999999999999998863 4567999999999999887532 234555555432 223456899999
Q ss_pred ecccccccc-cC----HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGVDWD-QK----DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll~~~-~d----~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+-.. -... +. ...+++.+++.|+|||.+++....+
T Consensus 168 ~D~~-dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp 207 (295)
T d1inla_ 168 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 207 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCC-CCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence 7632 2111 11 1479999999999999999987654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.52 E-value=2.8e-05 Score=76.01 Aligned_cols=119 Identities=12% Similarity=0.109 Sum_probs=75.0
Q ss_pred EEEeccccchhhhhhhhhcC--CCeEEEEeecCCCCCchhhHhccc-ccccccccccCCCCCCCccccccccCccccccC
Q 005959 518 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLPMILDRG-FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 594 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~--~~vwvmnv~p~~~~~~l~~~~~RG-lig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~ 594 (667)
.|||+|||.|.++.+|.+.. -.|+.+.+.|.--..-...+-.|+ ++-+.+|...+.+.-+.++|.+-+...+.
T Consensus 77 ~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~---- 152 (230)
T d1g8sa_ 77 KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVA---- 152 (230)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC----
T ss_pred EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecccc----
Confidence 79999999999999998742 236666655543222222344455 45566677666654446666544432232
Q ss_pred CCCCCCcchhheeccccccCCcEEEEEcC----------HHHHHHHHHHHhhCCCeeE
Q 005959 595 HRHRCSTLDIFTEIDRILRPEGWVIIRDT----------ARLIESARALTTRLKWDAR 642 (667)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----------~~~~~~~~~~~~~~~W~~~ 642 (667)
.......++.|+.|+|+|||++++.++ ..+.+++.+.++.-..+..
T Consensus 153 --~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv 208 (230)
T d1g8sa_ 153 --QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV 208 (230)
T ss_dssp --STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred --chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 234456789999999999999998632 2445666666655555543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.50 E-value=3.7e-05 Score=72.45 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=71.4
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccc-----cccccccCCCCCCCccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG-----VLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig-----~~~~~c~~f~typ~tyDl~H~ 585 (667)
-.+|||+|||.|.|+.+|..... +|.-+|-. ..+..+-+ -|+-. +..|+-+.++ +.+||+|-+
T Consensus 53 ~~~VLDiGcG~G~~~~~la~~~~-----~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--~~~fD~Ii~ 125 (194)
T d1dusa_ 53 DDDILDLGCGYGVIGIALADEVK-----STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIIT 125 (194)
T ss_dssp TCEEEEETCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEE
T ss_pred CCeEEEEeecCChhHHHHHhhcc-----ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--cCCceEEEE
Confidence 45899999999999999987433 34444543 44444432 23311 2235555443 589999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEc-CHHHHHHHHHHHhhCCCeeEEe
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
+..|.... -.+..++-++.|+|+|||.+++.- ....-+.+....+.+-+++...
T Consensus 126 ~~p~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~ 180 (194)
T d1dusa_ 126 NPPIRAGK-----EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETV 180 (194)
T ss_dssp CCCSTTCH-----HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEE
T ss_pred cccEEecc-----hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEE
Confidence 87764332 123457888999999999876632 2222344445555554554443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=1.6e-05 Score=77.01 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=60.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc------cccccccc---ccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG------FVGVLHDW---CEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG------lig~~~~~---c~~f~typ~tyDl~H~~ 586 (667)
..|||+|||.|.++.+|.+ ... -+|+-+|-. ..+..+-++. +..+.+++ ...++. .+||+|-.+
T Consensus 55 ~~VLdIGcG~G~~a~~~a~--~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~fD~i~fD 128 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQE--API--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYD 128 (229)
T ss_dssp EEEEEECCTTSHHHHHHHT--SCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEEC
T ss_pred CeEEEeeccchHHHHHHHH--cCC--CeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccccc--ccccceeec
Confidence 4799999999999999986 222 244445544 5555554432 22333444 344443 678887644
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
...+.... .+.-....++-|+=|+|||||.|++-
T Consensus 129 ~~~~~~~~-~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 129 TYPLSEET-WHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCCCBGGG-TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccc-ccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 43332210 02223446889999999999999884
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=97.47 E-value=1.7e-05 Score=76.97 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=65.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc-ccc-ccccccCCCCCCCcccccccc-Cc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGV-LHDWCEAFPTYPRTYDLVHAE-GL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl-ig~-~~~~c~~f~typ~tyDl~H~~-~~ 588 (667)
++|||+|||.|.++-.|.+.+. +|+=+|.. ..|..+-+| |+ +-+ ..|..+ |+. +++||+|=|. +.
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~-----~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFK-----NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN-LNI-NRKFDLITCCLDS 111 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS-----EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG-CCC-SCCEEEEEECTTG
T ss_pred CeEEEEeCcCCHHHHHHHHhCC-----ccEeeccchhhhhhccccccccCccceeeccchhh-hcc-cccccccceeeee
Confidence 5799999999999999998433 45556766 667776654 43 111 123433 332 6899998764 44
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
|.... +.-....+|-+|-|.|+|||.||+.
T Consensus 112 ~~~~~---~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 112 TNYII---DSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGGCC---SHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeccC---CHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 55443 3345556899999999999999973
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.00029 Score=70.90 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=74.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+++||-||.|.|..+..+.+.. ....++.+|+++.+++.|++-. ..+.+...|+.. +.-..++||+|+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 56899999999999999998763 3568999999999999997542 344555555432 223456899999
Q ss_pred ecccccccccC----HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+-.. -..... -..+++.+++.|+|||.+++....+
T Consensus 157 ~D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 157 TDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EcCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 8632 111111 1258999999999999999976544
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.45 E-value=0.00025 Score=70.87 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=75.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+.+||-||.|.|..+..++++. ...+++.+|+++++++.|++-. ..+.+...|+.. +--.+++||+|+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 46899999999999999998862 3567999999999999987542 234555555432 223457899999
Q ss_pred eccccccccc--C--HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGVDWDQ--K--DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll~~~~--d--~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.-.. -.... . -..+++.+.+.|+|||.++.....+
T Consensus 154 ~D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~ 192 (274)
T d1iy9a_ 154 VDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (274)
T ss_dssp ESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence 7632 21111 1 2479999999999999999876544
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.45 E-value=0.00018 Score=73.30 Aligned_cols=105 Identities=12% Similarity=0.020 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+++||-||.|.|..+..+++.. ....|+.+|+++.+++.|++-. ..+.+...|+.. +.-..++||+|+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 56899999999999999999863 4568999999999999998642 223444444322 122456899999
Q ss_pred ecccccccccC----HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 323 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 323 ~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+-.. -...+. -..+++.+++.|+|||.++.....+.
T Consensus 185 ~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~ 224 (312)
T d2b2ca1 185 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW 224 (312)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred EcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChH
Confidence 8633 211111 13589999999999999999865443
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=3.1e-05 Score=78.44 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=63.6
Q ss_pred eEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCCCchhhHhcccc---cccccccccCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~~~l~~~~~RGl---ig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
.+|||+|||.|.++..+.+.+ +.|..+-.-+. .......+-+.|+ |=+.+.-.+-++.-+..||+|-+.-+++..
T Consensus 37 ~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~-~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~ 115 (311)
T d2fyta1 37 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFL 115 (311)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTB
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHH-HHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeec
Confidence 469999999999988887643 22333222110 0012234455565 444444445555445899999887666655
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEE
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
. ..-.++.++-.++|+|+|||.+|-
T Consensus 116 ~---~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 116 L---FESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp T---TTCHHHHHHHHHHHHEEEEEEEES
T ss_pred c---cccccHHHHHHHHhcCCCCcEEec
Confidence 4 334556778889999999999983
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.43 E-value=9.4e-05 Score=70.90 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=74.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cch----hhHhcccc--cccc-cccc---cCCCCCCCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL----PMILDRGF--VGVL-HDWC---EAFPTYPRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l----~~~~~RGl--ig~~-~~~c---~~f~typ~tyDl~H~ 585 (667)
..|||+|||.|.|...|....-+. |++-.|-. +-+ .-+-+.|+ |-++ .|-. +-|+. .++|.||.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~---~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~--~~~~~i~i 107 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFED--GEIDRLYL 107 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCT--TCCSEEEE
T ss_pred CeEEEEeccCCHHHHHHHHHCCCC---ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccC--Cceehhcc
Confidence 479999999999999998753344 33444433 223 33445665 2222 2222 22332 79999986
Q ss_pred cCccccccCC--CCCCCc-chhheeccccccCCcEEEE-EcCHHHHHHHHHHHhhCCCeeEE
Q 005959 586 EGLLSLESGH--RHRCST-LDIFTEIDRILRPEGWVII-RDTARLIESARALTTRLKWDARV 643 (667)
Q Consensus 586 ~~~~~~~~~~--~~~c~~-~~~l~E~dRiLRP~G~~i~-~d~~~~~~~~~~~~~~~~W~~~~ 643 (667)
... ..|... .+|--+ ..+|-++.|+|+|||.+++ +|..+..+.+........|....
T Consensus 108 ~fP-dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~ 168 (204)
T d1yzha1 108 NFS-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 168 (204)
T ss_dssp ESC-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred ccc-ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccc
Confidence 332 223210 122333 4778889999999999987 57777777777766666665443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=0.00046 Score=66.20 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=73.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|+|||+|.|.-+..++-.. +...++.+|.+..-+.+.+ +-++ ++.+....++.+. .+.+||+|+|-.+
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhh--
Confidence 3689999999999998888652 4578999999988775543 3465 4666666777664 3468999988643
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.....++.-....+++||.+++.--
T Consensus 142 ---~~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 142 ---ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---cCHHHHHHHHHHhcCCCcEEEEECC
Confidence 4467899999999999999998753
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.33 E-value=4.2e-05 Score=77.74 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=62.7
Q ss_pred eEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCCCchhhHhcccc---cccccccccCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~~~l~~~~~RGl---ig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
.+|||+|||.|.++-.+.+.+ +.|..+-.-|. .......+-..|+ |-+.+.--+-++.-+..+|+|-+.-+.+..
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l 113 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCL 113 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTB
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeee
Confidence 469999999999877666543 33433332111 0122234444566 333333333344444789999887666555
Q ss_pred cCCCCCCCcchhheeccccccCCcEEE
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVI 619 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i 619 (667)
. ....++.++-+++|+|+|||.+|
T Consensus 114 ~---~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 114 F---YESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp T---BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred c---cHHHHHHHHHHHHhcCCCCeEEE
Confidence 4 45667789999999999999998
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.22 E-value=0.00054 Score=64.04 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---ceEEeecc---cCCCCCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFAS---KQLPYPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da---~~Lpfpd~sFDlV~~ 323 (667)
..+|||+-||+|.++...+.+|.. .++.+|.+...++..++. +.. ..+...++ .........||+|++
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 368999999999999999999854 688999999998766643 222 23333332 222344567999998
Q ss_pred cccccccccCHHHHHHHHH--hcccCCeEEEEEeC
Q 005959 324 ARCGVDWDQKDGILLLEVD--RVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~--RvLKPGG~Lvis~p 356 (667)
--- +.. .....++..+. .+|+++|++++...
T Consensus 122 DPP-Y~~-~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 122 DPP-FHF-NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCC-SSS-CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred chh-Hhh-hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 754 222 22345666664 47999999999654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.16 E-value=8.8e-05 Score=75.63 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=62.0
Q ss_pred eEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCCCchhhHhcccccc---cccccccCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~~~l~~~~~RGlig---~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
.+|||+|||+|.++-.+.+.+ +.|...-.-+ ........+-+.|+.. +++.-.+.++.-+..||+|-+.-++...
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~ 118 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL 118 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTB
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceee
Confidence 379999999999987777643 2333322211 0001223445567633 2333333333324789999987776655
Q ss_pred cCCCCCCCcchhheeccccccCCcEEE
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVI 619 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i 619 (667)
. ..-.+..++.+++|+|+|||.+|
T Consensus 119 ~---~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 119 L---YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp S---TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred c---cchhHHHHHHHHHhccCCCeEEE
Confidence 4 44556688999999999999987
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00042 Score=64.99 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=64.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~sFDlV~~s 324 (667)
+..+||||||++|.++.++.+.......+.++|..+- +.-....+..++..... ...+.||+|+|-
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD 95 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc------cccCCceEeecccccchhhhhhhhhccCcceeEEEec
Confidence 3579999999999999999876334456888887541 11123344555543321 235679999997
Q ss_pred ccccccccCH-----------HHHHHHHHhcccCCeEEEEEeCC
Q 005959 325 RCGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 325 ~~ll~~~~d~-----------~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.+ .....+. ...+.-+.++|++||.|++=.+.
T Consensus 96 ~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 96 MA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred cc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 54 3322111 13566788999999999998764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.12 E-value=8.7e-05 Score=69.41 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=69.4
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc---ccccccccCCCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli---g~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.|||+|||+|+++.+|......| +-+|-. +-+..+-+ -|+- =+++.--+...+=...||+|-+....
T Consensus 36 ~VLDiGcGsG~~s~~lA~~~~~V-----~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~ 110 (186)
T d1l3ia_ 36 VAVDVGCGTGGVTLELAGRVRRV-----YAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG 110 (186)
T ss_dssp EEEEESCTTSHHHHHHHTTSSEE-----EEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred EEEEEECCeEcccccccccceEE-----EEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc
Confidence 69999999999999998643333 333443 44444433 3431 12221111111112578888765432
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCeeEEe
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 644 (667)
. .+..++-++-+.|||||++++..- .+...++.+......|+....
T Consensus 111 ~---------~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~~~ 157 (186)
T d1l3ia_ 111 G---------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (186)
T ss_dssp T---------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred c---------cchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeEEE
Confidence 2 345788899999999999998753 355666667777767765544
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.12 E-value=0.00021 Score=69.62 Aligned_cols=134 Identities=13% Similarity=0.247 Sum_probs=76.7
Q ss_pred EEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhccc-ccccccccccC--CCCCCCccccccccCcccc
Q 005959 518 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRG-FVGVLHDWCEA--FPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~RG-lig~~~~~c~~--f~typ~tyDl~H~~~~~~~ 591 (667)
+|||+|||.|+++.+|.+. +-.|..+-+.|.-.......+-.|+ +.-+..|=..+ ++...-.+|.++++-...
T Consensus 76 ~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~- 154 (227)
T d1g8aa_ 76 SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQP- 154 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCST-
T ss_pred EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcccc-
Confidence 7999999999999999862 2235555444433222233444556 34444443322 222234577776532111
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEc----------CHHHHHHHHHHHhhCCCeeE-EeeeccCC-CccEEEEEc
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD----------TARLIESARALTTRLKWDAR-VIEIESNS-DERLLICQK 659 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d----------~~~~~~~~~~~~~~~~W~~~-~~~~~~~~-~~~~li~~K 659 (667)
-....++-++.|.|+|||+++|.. ...+.++++++.+. .++.. ..+.+.-. +.-++|++|
T Consensus 155 -------~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 155 -------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp -------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTSSSEEEEEEEC
T ss_pred -------chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCCCceEEEEEEe
Confidence 122358999999999999999852 23555666666554 45543 22333222 345677777
Q ss_pred c
Q 005959 660 P 660 (667)
Q Consensus 660 ~ 660 (667)
+
T Consensus 227 ~ 227 (227)
T d1g8aa_ 227 T 227 (227)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=8.5e-05 Score=71.56 Aligned_cols=120 Identities=12% Similarity=-0.022 Sum_probs=74.5
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----------------------cc-c-ccccccccC
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----------------------GF-V-GVLHDWCEA 572 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----------------------Gl-i-g~~~~~c~~ 572 (667)
.|||+|||.|-.+-.|.+.+.. |+-+|.. .-+..+.++ |. + -...|.-+-
T Consensus 48 rvLd~GCG~G~~a~~LA~~G~~-----V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 48 RVFFPLCGKAVEMKWFADRGHS-----VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp EEEETTCTTCTHHHHHHHTTCE-----EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred EEEEeCCCCcHHHHHHHhCCCc-----EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 5999999999999999985543 4444544 333222221 10 0 011122222
Q ss_pred CCCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEE----cCH--------HHHHHHHHHHhhCCCe
Q 005959 573 FPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR----DTA--------RLIESARALTTRLKWD 640 (667)
Q Consensus 573 f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~----d~~--------~~~~~~~~~~~~~~W~ 640 (667)
-+.+..+||+|....+|.+.. .-....++-+|-|+|||||++++. +.. -.-++++.+... .|+
T Consensus 123 ~~~~~~~fd~i~~~~~l~~~~----~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~ 197 (229)
T d2bzga1 123 PRTNIGKFDMIWDRGALVAIN----PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICN 197 (229)
T ss_dssp GGSCCCCEEEEEESSSTTTSC----GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEE
T ss_pred cccccCceeEEEEEEEEEecc----chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCE
Confidence 245557999999988887764 233457889999999999987764 110 124567777765 477
Q ss_pred eEEeeec
Q 005959 641 ARVIEIE 647 (667)
Q Consensus 641 ~~~~~~~ 647 (667)
+...+..
T Consensus 198 i~~le~~ 204 (229)
T d2bzga1 198 IRCLEKV 204 (229)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7655443
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.06 E-value=0.0011 Score=62.22 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=79.2
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CceEEeecccCC
Q 005959 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQL 311 (667)
Q Consensus 233 y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~L 311 (667)
+.+++.+.+...++ ..++|..+|.|..+..+++.+ ..|+++|..+.+++.|+++.. ...+.......+
T Consensus 6 ll~Evl~~l~~~~g--------~~~vD~T~G~GGhs~~iL~~~---~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~ 74 (182)
T d1wg8a2 6 LYQEALDLLAVRPG--------GVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHL 74 (182)
T ss_dssp THHHHHHHHTCCTT--------CEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGH
T ss_pred HHHHHHHhcCCCCC--------CEEEEeCCCCcHHHHHHhccc---CcEEEEhhhhhHHHHHhhccccceeEeehHHHHH
Confidence 34455566654444 899999999999999999974 468999999999999987532 334444443332
Q ss_pred C-----CCCCCccEEEecccccccc-cC-------HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 312 P-----YPSLSFDMLHCARCGVDWD-QK-------DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 312 p-----fpd~sFDlV~~s~~ll~~~-~d-------~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. +..+.+|.|+.-..+-.+. ++ ....|.....+|+|||.+++..+.
T Consensus 75 ~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 75 KRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred HHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 2 3346799998754321111 11 234788889999999999998873
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00017 Score=71.17 Aligned_cols=121 Identities=17% Similarity=0.067 Sum_probs=76.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cccc----------------------------
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVG---------------------------- 564 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Glig---------------------------- 564 (667)
=+.|||+|||.|.+...++. + +..+|+-.|-. +.+..+-.+ .-.+
T Consensus 55 g~~vLDiGcG~g~~~~~~~~--~--~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 55 GRTLIDIGSGPTVYQLLSAC--S--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSEEEEETCTTCCGGGTTGG--G--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CcEEEEeccCCCHHHHHHhc--c--cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 45789999999988765543 2 23366766765 555544211 0000
Q ss_pred ------c-ccccc-----cCCCCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH--------
Q 005959 565 ------V-LHDWC-----EAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------- 624 (667)
Q Consensus 565 ------~-~~~~c-----~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------- 624 (667)
+ .+|-. .+.+..+..||+|-+..+++.... ++.++..+|-++-|+|||||++|+.+..
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~--~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~ 208 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP--DLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG 208 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHcc--CHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC
Confidence 0 11111 122333468999999888887753 5567788999999999999999986321
Q ss_pred --------HHHHHHHHHHhhCCCeeE
Q 005959 625 --------RLIESARALTTRLKWDAR 642 (667)
Q Consensus 625 --------~~~~~~~~~~~~~~W~~~ 642 (667)
-..++++++.+.---+++
T Consensus 209 ~~~~~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 209 EARLTVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred CcccccCCCCHHHHHHHHHHCCCeEE
Confidence 134677777766655544
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=96.95 E-value=5.1e-05 Score=69.67 Aligned_cols=95 Identities=9% Similarity=-0.038 Sum_probs=60.9
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhccc----cc---c------------cccccccCCCCCC-
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRG----FV---G------------VLHDWCEAFPTYP- 577 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RG----li---g------------~~~~~c~~f~typ- 577 (667)
.|||+|||.|-++..|.+.+..|+...+.+ +.|..+-+|- .. + ...|+ ...+.++
T Consensus 23 rvLd~GCG~G~~a~~la~~G~~V~gvD~S~----~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~ 97 (201)
T d1pjza_ 23 RVLVPLCGKSQDMSWLSGQGYHVVGAELSE----AAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-FALTARDI 97 (201)
T ss_dssp EEEETTTCCSHHHHHHHHHCCEEEEEEECH----HHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-SSSTHHHH
T ss_pred EEEEecCcCCHHHHHHHHcCCceEeecccH----HHHHHHHHHhccccchhhhhhhhhccccccceecccc-cccccccc
Confidence 799999999999999998766666554432 3333333321 10 0 11111 1112222
Q ss_pred CccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 578 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 578 ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.+||+|.+..++.... ......++-+|-|.|+|||.+++.
T Consensus 98 ~~~D~i~~~~~l~~l~----~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 98 GHCAAFYDRAAMIALP----ADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp HSEEEEEEESCGGGSC----HHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred cceeEEEEEeeeEecc----hhhhHHHHHHHHHhcCCCcEEEEE
Confidence 5799999988887653 133446888899999999998774
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.95 E-value=0.00058 Score=66.62 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=64.7
Q ss_pred CCEEEEeCCCCchHHHHHhhc---CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC----CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP----YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~---g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp----fpd~sFDlV~~s~~ 326 (667)
+.+|||||++.|..+..+++. -.....++++|+.+.....+......+.+..++..... +....||+|+.-..
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~ 160 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 160 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence 579999999999877666532 11345789999876554433333345666666654432 33557898886533
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++ ......-+ ++...|+|||++++.|..
T Consensus 161 -H~-~~~v~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 161 -HA-NTFNIMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp -CS-SHHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred -cc-hHHHHHHH-HHhcccCcCCEEEEEcCC
Confidence 32 22222223 466899999999998864
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=96.91 E-value=0.00023 Score=70.27 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=57.9
Q ss_pred EEEeccccchhhhhhhhhc-CCCeEEEEeecCCCC-CchhhHhcc----cc----cccccccccCCCCCCCccccccccC
Q 005959 518 NVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GF----VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~~~~R----Gl----ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.|||+|||.|+++.+|... +..= .|.-.|-. .-+..+-++ +. --...|.++.++. .+||.|..+
T Consensus 88 rVLEiG~GsG~lt~~la~~v~~~g---~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~--~~fD~V~ld- 161 (250)
T d1yb2a1 88 DILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD--QMYDAVIAD- 161 (250)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS--CCEEEEEEC-
T ss_pred EEEEeeeeCcHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc--ceeeeeeec-
Confidence 6999999999999888752 0110 12222333 344444432 32 2244677777664 889999863
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+-+.|. +|=++-|+|||||.+++.-
T Consensus 162 ~p~p~~----------~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 162 IPDPWN----------HVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp CSCGGG----------SHHHHHHTEEEEEEEEEEE
T ss_pred CCchHH----------HHHHHHHhcCCCceEEEEe
Confidence 334443 7889999999999999863
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.004 Score=63.30 Aligned_cols=95 Identities=17% Similarity=0.260 Sum_probs=66.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-C---CCCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-L---PYPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-L---pfpd~sFDlV~~s 324 (667)
..+|||+-||+|.++..|++. ...|+++|.++.+++.|++. ++ +..+..++.+. + +.....||+|+..
T Consensus 213 ~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD 289 (358)
T d1uwva2 213 EDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 289 (358)
T ss_dssp TCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence 478999999999999999987 35699999999999877653 44 45566666543 2 2335679999876
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
--.-- ....+..+.+ ++|.-++++|.-
T Consensus 290 PPR~G----~~~~~~~l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 290 PARAG----AAGVMQQIIK-LEPIRIVYVSCN 316 (358)
T ss_dssp CCTTC----CHHHHHHHHH-HCCSEEEEEESC
T ss_pred CCCcc----HHHHHHHHHH-cCCCEEEEEeCC
Confidence 32111 1245666655 377777777753
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.72 E-value=0.0025 Score=62.51 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=62.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH--HH-HHcCCCc-eEE-eecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ--LT-LERGLPA-MIG-SFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~--~A-~ergl~~-~~~-~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|+|+|||+|.++.+++++. .+..+.++++--..-+ .. ...+-++ .+. ..++. -.+++..|+|+|-.+ .
T Consensus 67 ~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~--~l~~~~~D~vlcDm~-e 142 (257)
T d2p41a1 67 EGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVF--FIPPERCDTLLCDIG-E 142 (257)
T ss_dssp CEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTT--TSCCCCCSEEEECCC-C
T ss_pred CCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccchhhhhHH--hcCCCcCCEEEeeCC-C
Confidence 3689999999999999999873 4567777776322100 00 0000011 111 11222 235678999999854 2
Q ss_pred ccccCH-------HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 329 DWDQKD-------GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 329 ~~~~d~-------~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+ ..++ -++|.-+.+.|+|||-|++-.+.+..
T Consensus 143 s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~ 180 (257)
T d2p41a1 143 S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM 180 (257)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS
T ss_pred C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCC
Confidence 2 2222 14666777999999999998887654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.70 E-value=0.0033 Score=61.38 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCC-ceEEeecccCCCC---CCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP-AMIGSFASKQLPY---PSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~-~~~~~~da~~Lpf---pd~sFDlV~~s 324 (667)
...+++|||+|.|.-+..|+-. .+...++.+|.+..-+.+.+ +-++. +.+....++.+.. ..++||+|+|-
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~-~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHh-CCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 3468999999999988888754 24567999999987765543 34654 3455555555432 23589999987
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+ .....++.-....+++||.+++.--
T Consensus 149 Av-----a~l~~ll~~~~~~l~~~g~~i~~KG 175 (239)
T d1xdza_ 149 AV-----ARLSVLSELCLPLVKKNGLFVALKA 175 (239)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred hh-----hCHHHHHHHHhhhcccCCEEEEECC
Confidence 44 4567899999999999999998754
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.67 E-value=0.004 Score=62.96 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCC-ceEEeecccCCCCCCCCccEEEe----
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHC---- 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~-~~~~~~da~~Lpfpd~sFDlV~~---- 323 (667)
.+.+|||+.||.|.=|..+++.......+++.|.++.-++..++ .++. +.+...+...++..+..||.|++
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPC 195 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC 195 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcccc
Confidence 34899999999999888887664445678999999887765443 3443 34455566666666788999986
Q ss_pred ccc-ccc--------cc-cCH-------HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 ARC-GVD--------WD-QKD-------GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 s~~-ll~--------~~-~d~-------~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+.. .+. +. .+. .++|....+.|||||+++.++-....
T Consensus 196 Sg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~ 249 (313)
T d1ixka_ 196 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 249 (313)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred ccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence 211 011 11 111 24788999999999999999876544
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=96.48 E-value=0.00032 Score=67.21 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=49.2
Q ss_pred EEEeccccchhhhhhhhhc-CC--CeEEEEeecCCCCCchhhHh---c-ccccccccccccCCCCCC--CccccccccCc
Q 005959 518 NVLDMNAHFGGFNSALLEK-GK--SVWVMNVVPTIGTNHLPMIL---D-RGFVGVLHDWCEAFPTYP--RTYDLVHAEGL 588 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~-~~--~vwvmnv~p~~~~~~l~~~~---~-RGlig~~~~~c~~f~typ--~tyDl~H~~~~ 588 (667)
+|||+|||+|.+++.|... +. .|...-+-| ..+..+- + -|+-.+..-.......+| .+||.|++...
T Consensus 78 ~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~----~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (213)
T d1dl5a1 78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR----KICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG 153 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH----HHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred eEEEecCccchhHHHHHHHhCCCCcEEEeecch----hhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhcc
Confidence 8999999999999888642 11 233332222 2222222 2 233222222222333333 68999999766
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+.... + ++=|.|+|||.+|+-
T Consensus 154 ~~~~p---------~---~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 154 VDEVP---------E---TWFTQLKEGGRVIVP 174 (213)
T ss_dssp BSCCC---------H---HHHHHEEEEEEEEEE
T ss_pred HHHhH---------H---HHHHhcCCCcEEEEE
Confidence 54322 2 233679999999973
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.0019 Score=63.61 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=52.8
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecc
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFAS 308 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da 308 (667)
...+.+.+.+.... ...|||||||+|.+|..|++.+ ..++++|.++.+++..+++. .+..+..+|+
T Consensus 8 ~~~~~Iv~~~~~~~--------~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~ 76 (252)
T d1qyra_ 8 FVIDSIVSAINPQK--------GQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDA 76 (252)
T ss_dssp HHHHHHHHHHCCCT--------TCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCG
T ss_pred HHHHHHHHhcCCCC--------CCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhhhccchhHHhhhh
Confidence 44556666665443 3789999999999999999885 45899999999999887653 2355666666
Q ss_pred cCCCC
Q 005959 309 KQLPY 313 (667)
Q Consensus 309 ~~Lpf 313 (667)
..+++
T Consensus 77 l~~~~ 81 (252)
T d1qyra_ 77 MTFNF 81 (252)
T ss_dssp GGCCH
T ss_pred hhhcc
Confidence 65543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.0032 Score=62.83 Aligned_cols=82 Identities=18% Similarity=0.141 Sum_probs=59.3
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEe
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGS 305 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~ 305 (667)
...+.+.+.+.... ...|||||+|+|.+|..|++.+ ..+++++.++.+++..+++- .+..+..
T Consensus 8 ~i~~kIv~~~~~~~--------~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~ 76 (278)
T d1zq9a1 8 LIINSIIDKAALRP--------TDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLV 76 (278)
T ss_dssp HHHHHHHHHTCCCT--------TCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEE
T ss_pred HHHHHHHHHhCCCC--------CCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhH
Confidence 34455555554433 3799999999999999999985 36899999999998877641 2455677
Q ss_pred ecccCCCCCCCCccEEEeccc
Q 005959 306 FASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+|+....++ .++.|+++.-
T Consensus 77 ~D~l~~~~~--~~~~vV~NLP 95 (278)
T d1zq9a1 77 GDVLKTDLP--FFDTCVANLP 95 (278)
T ss_dssp SCTTTSCCC--CCSEEEEECC
T ss_pred HHHhhhhhh--hhhhhhcchH
Confidence 777666655 3677887743
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.0037 Score=62.31 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCceEEeecccCCC--CCCCCccEEEe---
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLP--YPSLSFDMLHC--- 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~~~~~~~da~~Lp--fpd~sFDlV~~--- 323 (667)
.+.+|||+.+|.|.=|..+++.+. ...|+++|.++.-++.. ++.|+.......+....+ ...+.||.|++
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred ccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 448999999999999999987643 36789999997665443 344666555443322221 23468999995
Q ss_pred -ccc-ccc--------cccC--------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 -ARC-GVD--------WDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 -s~~-ll~--------~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+.. .+. +.+. ..++|....+.|||||+++.++-....
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 235 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence 211 111 1111 125788899999999999999876544
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.17 E-value=0.0061 Score=63.78 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcC----C--------ceeEEEEecCCHHHHHHHHHc-
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE----L--------LTMCIANYEASGSQVQLTLER- 297 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g----~--------~~~sV~gvD~S~~ml~~A~er- 297 (667)
....+.+.+++... ...+|+|-.||+|.|...+.++- . ....+.|+|.++.+...|+..
T Consensus 148 ~~Iv~~mv~ll~~~--------~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~ 219 (425)
T d2okca1 148 RPLIQAMVDCINPQ--------MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL 219 (425)
T ss_dssp HHHHHHHHHHHCCC--------TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred hhhhHhhheeccCc--------ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhh
Confidence 34455556555432 34789999999999987776531 0 013488999999998877643
Q ss_pred ---CCC---ceEEeecccCCCCCCCCccEEEeccccc-ccc--------------cC-HHHHHHHHHhcccCCeEEEEEe
Q 005959 298 ---GLP---AMIGSFASKQLPYPSLSFDMLHCARCGV-DWD--------------QK-DGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 298 ---gl~---~~~~~~da~~Lpfpd~sFDlV~~s~~ll-~~~--------------~d-~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+.. ..+...+...- .+...||+|+++.-.- .+. .+ ...++..+...|++||.+++..
T Consensus 220 ~l~g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 220 YLHGIGTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp HHTTCCSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCCccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 322 22344443322 3456899999985421 000 01 1258999999999999999988
Q ss_pred CC
Q 005959 356 PL 357 (667)
Q Consensus 356 p~ 357 (667)
|.
T Consensus 299 p~ 300 (425)
T d2okca1 299 PD 300 (425)
T ss_dssp EH
T ss_pred ch
Confidence 73
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=96.15 E-value=0.002 Score=63.83 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=64.2
Q ss_pred EEEeccccchhhhhhhhhcC-CCeEEEEeecCCCC-CchhhHhc----ccccc----cccccccCCCCCCCccccccccC
Q 005959 518 NVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~~~~----RGlig----~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.|||+|||.|+++++|...- ..-- |.-.|-+ ..+..+-+ -|+.. ...|-++.|+. ..||.|..
T Consensus 106 ~VLDiG~GsG~lt~~lA~~~~~~G~---V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~--~~~D~V~~-- 178 (266)
T d1o54a_ 106 RIIDTGVGSGAMCAVLARAVGSSGK---VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--KDVDALFL-- 178 (266)
T ss_dssp EEEEECCTTSHHHHHHHHHTTTTCE---EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC--CSEEEEEE--
T ss_pred EEEECCCCCCHHHHHHHHHhCCCcE---EEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc--cceeeeEe--
Confidence 79999999999999997521 1111 2223333 33333322 24422 23344555554 67887654
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhCCCe
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWD 640 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~ 640 (667)
+-.+...+|-++-|+|||||.+++- -..+.++++.+.++.-.|.
T Consensus 179 ---------d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 179 ---------DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp ---------CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred ---------cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 2233446899999999999999864 4455555555555555664
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0016 Score=64.90 Aligned_cols=135 Identities=12% Similarity=0.177 Sum_probs=83.9
Q ss_pred EEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cc---ccccccccccCCCCCCCccccccccCccc
Q 005959 519 VLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RG---FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 519 vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RG---lig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
|||+|||+|.-|.+|....... .|+-+|-. ..+.++-+ -| +-=+..||-++++. ..||+|=|+--+.
T Consensus 112 vlDlGtGSG~I~i~la~~~p~~---~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPPYi 186 (274)
T d2b3ta1 112 ILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG--QQFAMIVSNPPYI 186 (274)
T ss_dssp EEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT--CCEEEEEECCCCB
T ss_pred eeeeehhhhHHHHHHHhhCCcc---eeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC--CceeEEEecchhh
Confidence 8999999999999997643333 34445543 33333221 12 22355678777765 6899998864432
Q ss_pred ccc------------CCCCCCC-------cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeeccCCC
Q 005959 591 LES------------GHRHRCS-------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSD 651 (667)
Q Consensus 591 ~~~------------~~~~~c~-------~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 651 (667)
... ....... +..++-+.-+.|+|||++++-=..+.-+.+.+++....|.....-.+-.+.
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl~g~ 266 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDN 266 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTTSS
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 211 0000000 114778889999999999996433445778888888888643332344557
Q ss_pred ccEEEEE
Q 005959 652 ERLLICQ 658 (667)
Q Consensus 652 ~~~li~~ 658 (667)
+++++++
T Consensus 267 ~R~v~~r 273 (274)
T d2b3ta1 267 ERVTLGR 273 (274)
T ss_dssp EEEEEEE
T ss_pred ceEEEEe
Confidence 8888875
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.69 E-value=0.0018 Score=64.22 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=61.1
Q ss_pred EEEeccccchhhhhhhhhc---CCCeEEEEeecCCCC-CchhhHhc---c---cccccc----ccccc-CCCCCCCcccc
Q 005959 518 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGT-NHLPMILD---R---GFVGVL----HDWCE-AFPTYPRTYDL 582 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~-~~l~~~~~---R---Glig~~----~~~c~-~f~typ~tyDl 582 (667)
+|||+|||.|+++.+|... +-.|++. |-. ..+..+-+ + +..... .|-.+ +|+. .+||.
T Consensus 99 ~VLE~G~GsG~lt~~La~~vgp~G~V~~~-----d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~--~~fDa 171 (264)
T d1i9ga_ 99 RVLEAGAGSGALTLSLLRAVGPAGQVISY-----EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD--GSVDR 171 (264)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTSEEEEE-----CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT--TCEEE
T ss_pred EEEecCcCCcHHHHHHHHhhCCCcEEEEe-----cCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccC--CCcce
Confidence 7999999999999999752 1123333 333 33333332 1 111111 22222 3443 89999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEE-cCHHHHHHH-HHHHhhCCCe
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESA-RALTTRLKWD 640 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~-~~~~~~~~W~ 640 (667)
|.. ++-+.|. ++-++-|+|||||.+++- -+.+.+.++ +.+...-.|.
T Consensus 172 V~l-dlp~P~~----------~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 172 AVL-DMLAPWE----------VLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp EEE-ESSCGGG----------GHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred EEE-ecCCHHH----------HHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence 876 3445554 788999999999998874 444444333 3343343464
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.56 E-value=0.0024 Score=62.01 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=63.7
Q ss_pred CceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhccc-ccccccccccCCCCCCCccccccccCccccc
Q 005959 514 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRG-FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 514 ~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RG-lig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
.+++.|+|+|||.|.++.+|++. .|=+ .++-.|-|..+..+-+.. +-.+-||..++.|. .|..-..+++..|
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~-~P~l--~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~----ad~~~l~~vlh~~ 152 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSK-YPTI--KGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPK----ADAVFMKWICHDW 152 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHH-CTTS--EEEEEECTTTTTTCCCCTTEEEEECCTTTCCCC----CSCEECSSSSTTS
T ss_pred cCCcEEEEecCCCcHHHHHHHHH-CCCC--eEEEcccHHhhhhcccCCceEEecccccccCCC----cceEEEEEEeecC
Confidence 56899999999999999999974 4422 222233333333222222 56677888777765 3444445566655
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.. +.|. .||-.+=+.|+|||.++|-|
T Consensus 153 ~d--~~~~--~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 153 SD--EHCL--KFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp CH--HHHH--HHHHHHHHHCCSSSCEEEEE
T ss_pred CH--HHHH--HHHHHHHHhcCCCceEEEEE
Confidence 42 2243 48999999999999999854
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.53 E-value=0.0012 Score=64.64 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=64.4
Q ss_pred CCceeEEEeccccchhhhhhhhhcCCC---eEEEEeecCCCCCchhhHhccc----ccccccccccCCCCCCCccccccc
Q 005959 513 YNMVRNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 513 ~~~~R~vlDm~~~~g~faa~l~~~~~~---vwvmnv~p~~~~~~l~~~~~RG----lig~~~~~c~~f~typ~tyDl~H~ 585 (667)
+..++.|+|+|||.|.++++|++. .| +.++.. |. +|-+.+ +--+-+|.=+++|. .|++..
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~-~P~l~~~v~Dl-----p~---vi~~~~~~~ri~~~~gd~~~~~p~----~D~~~l 145 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISK-YPLIKGINFDL-----PQ---VIENAPPLSGIEHVGGDMFASVPQ----GDAMIL 145 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHH-CTTCEEEEEEC-----HH---HHTTCCCCTTEEEEECCTTTCCCC----EEEEEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHH-CCCCeEEEecc-----hh---hhhccCCCCCeEEecCCccccccc----ceEEEE
Confidence 457999999999999999999974 33 333332 21 122221 23334565455553 599999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.+++..|.. +.|. .||-.+=+.|+|||.++|-|
T Consensus 146 ~~vLh~~~d--e~~~--~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 146 KAVCHNWSD--EKCI--EFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp ESSGGGSCH--HHHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred ehhhhhCCH--HHHH--HHHHHHHHHcCCCcEEEEEE
Confidence 999999863 3343 58888899999999999865
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.45 E-value=0.014 Score=60.36 Aligned_cols=98 Identities=14% Similarity=0.012 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC----------------ceEEeecccCCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP----------------AMIGSFASKQLPY 313 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~----------------~~~~~~da~~Lpf 313 (667)
+.+|||..||+|..+.+.+... ....|+..|.|+..++.++++ ++. ..+...|+..+..
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 4789999999999999766542 245799999999999888754 221 1122223222221
Q ss_pred -CCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 314 -PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 314 -pd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
....||+|..-- + ..+..+|....+.++.||.|.++..-
T Consensus 125 ~~~~~fDvIDiDP----f-Gs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 125 ERHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HSTTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhcCcCCcccCCC----C-CCcHHHHHHHHHHhccCCEEEEEecC
Confidence 235799998763 1 23456999999999999999998653
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.008 Score=64.73 Aligned_cols=119 Identities=11% Similarity=0.008 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhc----CC-------------ceeEEEEecCCHHHHHH
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK----EL-------------LTMCIANYEASGSQVQL 293 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~----g~-------------~~~sV~gvD~S~~ml~~ 293 (667)
....+.+.+++.... ..+|+|-.||+|.|.....++ .. ....+.|.|.++.+...
T Consensus 150 ~~Iv~~mv~ll~~~~--------~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l 221 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQP--------REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 221 (524)
T ss_dssp HHHHHHHHHHHCCCT--------TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred cchhHhhhhcccCcc--------chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence 344455666654333 378999999999998765542 10 01258899999999887
Q ss_pred HHHc----CCCce------EEeecccCCC-CCCCCccEEEeccccc-ccc-----------cCH-HHHHHHHHhcccCCe
Q 005959 294 TLER----GLPAM------IGSFASKQLP-YPSLSFDMLHCARCGV-DWD-----------QKD-GILLLEVDRVLKPGG 349 (667)
Q Consensus 294 A~er----gl~~~------~~~~da~~Lp-fpd~sFDlV~~s~~ll-~~~-----------~d~-~~~L~Ei~RvLKPGG 349 (667)
|+.. +.... +...+....+ .....||+|+++--.- .+. .+. -.++..+.+.|+|||
T Consensus 222 a~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gG 301 (524)
T d2ar0a1 222 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 301 (524)
T ss_dssp HHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccC
Confidence 7643 32221 1111111101 2345799999985311 110 111 248999999999999
Q ss_pred EEEEEeCC
Q 005959 350 YFVWTSPL 357 (667)
Q Consensus 350 ~Lvis~p~ 357 (667)
++++..|.
T Consensus 302 r~aiIlP~ 309 (524)
T d2ar0a1 302 RAAVVVPD 309 (524)
T ss_dssp EEEEEEEH
T ss_pred cEEEEEeh
Confidence 99998873
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.041 Score=54.67 Aligned_cols=106 Identities=8% Similarity=-0.015 Sum_probs=65.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCC-ceEEeecccCCCCCC---CCccEEEec-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPS---LSFDMLHCA- 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~-~~~~~~da~~Lpfpd---~sFDlV~~s- 324 (667)
+.+|||+.||+|.-|.++++.--....++++|.++.-++..++ .|+. +.+...|...+...+ +.||.|++-
T Consensus 95 g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~Da 174 (293)
T d2b9ea1 95 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDP 174 (293)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECC
T ss_pred cceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEeecC
Confidence 4789999999999888887652234568999999877655443 3554 445555655554322 579999863
Q ss_pred ---ccc-cc------c--c-cC--H-------HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 325 ---RCG-VD------W--D-QK--D-------GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 325 ---~~l-l~------~--~-~d--~-------~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
... +. | . .+ . ..++.... .|+|||+++.++-....
T Consensus 175 PCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~ 231 (293)
T d2b9ea1 175 SCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ 231 (293)
T ss_dssp CCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG
T ss_pred cccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh
Confidence 110 10 1 0 00 0 12444444 47999999999876543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.08 E-value=0.048 Score=48.84 Aligned_cols=96 Identities=11% Similarity=-0.007 Sum_probs=66.5
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC--------C-CCCCCccEEE
Q 005959 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL--------P-YPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCG-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L--------p-fpd~sFDlV~ 322 (667)
...+||-+||| .|.++..+++.. ...|+++|.++.-++.|++.+....+..-....- . ...+.+|+|+
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vi 103 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTI 103 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred CCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceee
Confidence 34789999999 578888777662 2468999999999999999876554432111100 0 1124689887
Q ss_pred ecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
-.-. ....+....++|+|+|.+++....
T Consensus 104 d~~g-------~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 104 DCSG-------NEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp ECSC-------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred ecCC-------ChHHHHHHHHHHhcCCceEEEecC
Confidence 5422 235788889999999999987654
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.01 Score=60.19 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=55.3
Q ss_pred EEEeccccchhhhhhhhhc---CCCeEEEEeecCCCC-CchhhHhcc--------------cc---cc-cccccccCCCC
Q 005959 518 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGT-NHLPMILDR--------------GF---VG-VLHDWCEAFPT 575 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~-~~l~~~~~R--------------Gl---ig-~~~~~c~~f~t 575 (667)
.|||+|||.|+++.+|... +-.|... |-+ ..+..+.++ +. +- ...|.|.....
T Consensus 101 rVLE~GtGsG~lt~~LAr~vg~~G~V~t~-----E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 101 TVLEAGSGSGGMSLFLSKAVGSQGRVISF-----EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEE-----ESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred EEEEecccccHHHHHHHHHhCCCcEEEEe-----cCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 6999999999999999752 1123332 222 222222210 11 11 12233333222
Q ss_pred CC-CccccccccCccccccCCCCCCCcchhheeccccccCCcEEEE-EcCHHHHHHHHHHHh--hCCCee
Q 005959 576 YP-RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII-RDTARLIESARALTT--RLKWDA 641 (667)
Q Consensus 576 yp-~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~-~d~~~~~~~~~~~~~--~~~W~~ 641 (667)
++ .+||.|..+ +-+.|. +|=|+-|+|||||.+++ .-+.+.+.++-+.++ .+.|..
T Consensus 176 ~~~~~fD~V~LD-~p~P~~----------~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~ 234 (324)
T d2b25a1 176 IKSLTFDAVALD-MLNPHV----------TLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSC 234 (324)
T ss_dssp -----EEEEEEC-SSSTTT----------THHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred cCCCCcceEeec-CcCHHH----------HHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCcee
Confidence 22 578877642 223332 67789999999999986 444444444433332 345643
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.42 E-value=0.0039 Score=59.55 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=66.1
Q ss_pred ceeEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhcccccc----cccccccCCCCC-----CCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFVG----VLHDWCEAFPTY-----PRTYDL 582 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~RGlig----~~~~~c~~f~ty-----p~tyDl 582 (667)
+-++||++|||.|..+.+|.+. +-.|+++-+-|......-..+-.-|+-. +..+..+-.+.+ ..+||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 4679999999999888888752 1224433332211111111222335411 122223333321 267999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc-----CHHHHHHHHHHHhhCCCeeEEe
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
|+.++-.+.+. ....+.|.-|+|||||.+|+-| .++.++.|++ .=.|+....
T Consensus 136 ifiD~~~~~~~-------~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~~ 192 (214)
T d2cl5a1 136 VFLDHWKDRYL-------PDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTHY 192 (214)
T ss_dssp EEECSCGGGHH-------HHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEEE
T ss_pred eeecccccccc-------cHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehhh
Confidence 99876544433 1235677889999999877633 3566666654 345665543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.29 E-value=0.015 Score=56.93 Aligned_cols=115 Identities=14% Similarity=0.215 Sum_probs=64.6
Q ss_pred eEEEeccccchhhhhhhhhcCC-CeEEEEeecCCCCCchhhHhc----ccccccccccccCCCCCC--CccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGTNHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~-~vwvmnv~p~~~~~~l~~~~~----RGlig~~~~~c~~f~typ--~tyDl~H~~~~~ 589 (667)
.+||||+||+|+|+-.++..+. .|+..-+-| ..+..+-+ -|+-+...-.+.-.-.++ ..||.|..+-..
T Consensus 109 ~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~----~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~ 184 (260)
T d2frna1 109 ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDP----YTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 184 (260)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCEEEEECCCH----HHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred cEEEECcceEcHHHHHHHHhCCcEEEEecCCH----HHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence 4799999999999987775432 333322222 33332221 244222211111112222 468877653222
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEc----C---HHHHHHHHHHHhhCCCeeEEee
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD----T---ARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d----~---~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
+ -...|-+.=++|+|||++.+-+ + .+..+.++.++....+++....
T Consensus 185 ~----------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~ 237 (260)
T d2frna1 185 R----------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN 237 (260)
T ss_dssp S----------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred c----------hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEEE
Confidence 1 1235556678999999986632 1 2346777888888888877654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.24 E-value=0.0072 Score=54.85 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=64.1
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC-CCCCCCCccEEEeccccccc
Q 005959 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-LPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 253 ~~~~VLDIGCG-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-Lpfpd~sFDlV~~s~~ll~~ 330 (667)
++.+||-+|+| .|.++..+++. ....++++|.+++.++.+++-|....+...+... ..-..+.||+|+..-...+
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~- 103 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT- 103 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST-
T ss_pred CCCEEEEECCCCcchhHHHHhhh--ccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc-
Confidence 34899999999 68888888765 2345788999999999999988654443211111 1112357998876422111
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
...+....+.|+|+|.+++...
T Consensus 104 ----~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 104 ----DIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp ----TCCTTTGGGGEEEEEEEEECCC
T ss_pred ----cchHHHHHHHhhccceEEEecc
Confidence 1124567889999999998754
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=94.18 E-value=0.006 Score=61.66 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=71.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----ccccc------ccccccccCCCCCCCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFV------GVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGli------g~~~~~c~~f~typ~tyDl~H~ 585 (667)
+.|||++||+|+|+.++... .-+|+-+|.. .-|..+- .-|+- +-.-+|.+.+..-..+||+|-+
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g-----~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALG-----FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHH-----EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeeeccCCCCcHHHHHHHhc-----CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 68999999999999998742 2356666655 4443332 23441 1112333334443468999987
Q ss_pred cCc-cccccCCC--CCCCcchhheeccccccCCcEEEEEcC------HHHHHHHHHHHhhCCCeeEEee
Q 005959 586 EGL-LSLESGHR--HRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 586 ~~~-~~~~~~~~--~~c~~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
+-= |+.-.... .......|+-..=++|+|||.+++... .+..+.+.+-+..-..++++.+
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~ 290 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 290 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 532 32211000 001122677788899999999999632 2444555555556666666553
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.012 Score=56.34 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=74.1
Q ss_pred ceeEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhcccc---cccc-cccccCCCC-----CCCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGF---VGVL-HDWCEAFPT-----YPRTYDL 582 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~RGl---ig~~-~~~c~~f~t-----yp~tyDl 582 (667)
+-++||++|+++|-=+.+|.+. +-.|.+.=.-|......-..+-.-|+ |-+. .+-.+..+. .+.+||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 4789999999999888888752 11222222111111111112222232 1111 222232222 2468999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH---------------HHHHH-HHHHHhhCCCeeEEeee
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------RLIES-ARALTTRLKWDARVIEI 646 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------------~~~~~-~~~~~~~~~W~~~~~~~ 646 (667)
|+.++--+.+. .++-++=+.|||||.+|+-|-. ..+.+ .+.|.+.-+|+....-.
T Consensus 139 ifiD~dk~~y~---------~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPi 209 (219)
T d2avda1 139 AVVDADKENCS---------AYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 209 (219)
T ss_dssp EEECSCSTTHH---------HHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred EEEeCCHHHHH---------HHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeec
Confidence 99865444443 4566666999999999985331 12323 34567778888777632
Q ss_pred ccCCCccEEEEEc
Q 005959 647 ESNSDERLLICQK 659 (667)
Q Consensus 647 ~~~~~~~~li~~K 659 (667)
.++++|++|
T Consensus 210 ----gdGl~ia~K 218 (219)
T d2avda1 210 ----GDGLTLAFK 218 (219)
T ss_dssp ----TTCEEEEEE
T ss_pred ----CCeeEEEEe
Confidence 356999987
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.0081 Score=57.61 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=22.6
Q ss_pred CccccccccCccccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 578 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 578 ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
..||.|++...... +.-++=+.|+|||.+|+
T Consensus 149 ~~fD~I~~~~~~~~------------ip~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 149 APYDAIHVGAAAPV------------VPQALIDQLKPGGRLIL 179 (224)
T ss_dssp CCEEEEEECSBBSS------------CCHHHHHTEEEEEEEEE
T ss_pred hhhhhhhhhcchhh------------cCHHHHhhcCCCcEEEE
Confidence 67999999655432 23344578999999997
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.62 E-value=0.049 Score=49.57 Aligned_cols=95 Identities=20% Similarity=0.244 Sum_probs=64.5
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecc---------cCCCCCCCCccEEE
Q 005959 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS---------KQLPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da---------~~Lpfpd~sFDlV~ 322 (667)
.+.+||-+|||. |.++..+++.- -...|+++|.+++.++.+++.|....+...+. .++ .....||+|+
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~-~~~~g~Dvvi 105 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDI-THGRGADFIL 105 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHH-TTTSCEEEEE
T ss_pred CCCEEEEECCCccchhheeccccc-ccccccccccccccccccccccceEEEeccccchHHHHHHHHHh-hCCCCceEEe
Confidence 348999999984 77888888762 12368999999999999998875433311110 011 1234599988
Q ss_pred ecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-.-. ....+....+.|+|||.+++...
T Consensus 106 d~vG-------~~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 106 EATG-------DSRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp ECSS-------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred ecCC-------chhHHHHHHHHhcCCCEEEEEee
Confidence 5522 12467888999999999988753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.40 E-value=0.13 Score=47.67 Aligned_cols=99 Identities=13% Similarity=-0.006 Sum_probs=66.5
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCC--------CCCCccEEEec
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY--------PSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpf--------pd~sFDlV~~s 324 (667)
+.+||-+|||. |.++..+++.. ....|+.+|.++.-++.|++.|....+ +...-++ ....+|+++-.
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t~g~g~D~vid~ 101 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFEIAD---LSLDTPLHEQIAALLGEPEVDCAVDA 101 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCEEEE---TTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhccccEEE---eCCCcCHHHHHHHHhCCCCcEEEEEC
Confidence 48999999997 77777777641 234688999999999999998854322 1111111 23468988854
Q ss_pred ccc------ccc--ccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCG------VDW--DQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~l------l~~--~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-.. .+. .......|.+..++++|||.+++...
T Consensus 102 vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 102 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 210 000 11234689999999999999998764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.041 Score=49.77 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=63.4
Q ss_pred CCCEEEEeCC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEE
Q 005959 253 GVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGC--GtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~sFDlV~ 322 (667)
+..+||-+|+ |.|..+..+++.- ...+++++.+++..+.+++.|....+ +..... ...+.||+|+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQNGAHEVF---NHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEE---ETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEecccccccccccccccc--CcccccccccccccccccccCccccc---ccccccHHHHhhhhhccCCceEEe
Confidence 4579999997 4678888888762 24577777788888999888765433 222211 1345799998
Q ss_pred ecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.... ...+.+..++|+|+|.++...
T Consensus 103 d~~g--------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 103 EMLA--------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp ESCH--------HHHHHHHHHHEEEEEEEEECC
T ss_pred eccc--------HHHHHHHHhccCCCCEEEEEe
Confidence 7632 246788889999999999864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.0087 Score=62.63 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=19.0
Q ss_pred cchhheeccccccCCcEEEEEc
Q 005959 601 TLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 601 ~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+...|-||=|+|||||.+|..+
T Consensus 312 l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 312 LNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHHHHHHHTTCCTTCEEEESS
T ss_pred HHHHHHHHHHhcCCCcEEEEec
Confidence 4478999999999999999865
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=93.00 E-value=0.071 Score=52.44 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=79.5
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cccc-cccccCCCCCCCcccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVL-HDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig~~-~~~c~~f~typ~tyDl~H~~ 586 (667)
...|+|+|||.|..+.++.+. .+. +|+-+|-. .-+.++-+ -|+ +-+. .||-++++.....||+|=++
T Consensus 111 ~~~vld~g~GsG~i~~~la~~-~~~---~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKF-SDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-SSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccEEEEeeeeeehhhhhhhhc-ccc---eeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 557999999999988888763 232 23444544 44443332 243 3333 45677766544679998876
Q ss_pred CccccccCC--------------CCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeeccCCCc
Q 005959 587 GLLSLESGH--------------RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSDE 652 (667)
Q Consensus 587 ~~~~~~~~~--------------~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 652 (667)
-=....... +...++.++--=+.++|+|||++++-=..+.-++++++++...| + .+-.+.+
T Consensus 187 PPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~----~-kDl~g~~ 261 (271)
T d1nv8a_ 187 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDTVF----L-KDSAGKY 261 (271)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTCEE----E-ECTTSSE
T ss_pred ccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHHhCCE----E-eccCCCc
Confidence 332111100 01111221100036889999999997444555677777776655 2 2445679
Q ss_pred cEEEEEcc
Q 005959 653 RLLICQKP 660 (667)
Q Consensus 653 ~~li~~K~ 660 (667)
++++.+|+
T Consensus 262 R~~~~~k~ 269 (271)
T d1nv8a_ 262 RFLLLNRR 269 (271)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEc
Confidence 99999985
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=92.97 E-value=0.014 Score=56.13 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=45.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cc--cccccccccCCCCCC--CccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GF--VGVLHDWCEAFPTYP--RTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Gl--ig~~~~~c~~f~typ--~tyDl~H~~~~~~ 590 (667)
.|||+|||+|-++|.|......| +-++-. ..+..+-++ .. +-+.+ ...+..|| ..||.|++.+...
T Consensus 73 ~VLdIG~GsGy~ta~La~l~~~V-----~aiE~~~~~~~~A~~~~~~~~nv~~~~--~d~~~g~~~~~pfD~Iiv~~a~~ 145 (224)
T d1vbfa_ 73 KVLEIGTGIGYYTALIAEIVDKV-----VSVEINEKMYNYASKLLSYYNNIKLIL--GDGTLGYEEEKPYDRVVVWATAP 145 (224)
T ss_dssp EEEEECCTTSHHHHHHHHHSSEE-----EEEESCHHHHHHHHHHHTTCSSEEEEE--SCGGGCCGGGCCEEEEEESSBBS
T ss_pred eEEEecCCCCHHHHHHHHHhccc-----ccccccHHHHHHHHHHHhccccccccc--CchhhcchhhhhHHHHHhhcchh
Confidence 79999999999998887643333 333332 222222221 11 11111 11122233 4599999865543
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
.. ..-| =+.|+|||.+|+
T Consensus 146 ~i---------p~~l---~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 146 TL---------LCKP---YEQLKEGGIMIL 163 (224)
T ss_dssp SC---------CHHH---HHTEEEEEEEEE
T ss_pred hh---------hHHH---HHhcCCCCEEEE
Confidence 22 2223 356999999987
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.83 E-value=0.089 Score=47.84 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=64.5
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC------CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp------fpd~sFDlV~~s~~ 326 (667)
..+||=+|||. |.++..+++.- -...|+++|.++.-++.+++-|....+. ...+... .....||+|+-.-.
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~-~~~~~~~~~v~~~t~g~G~D~vid~~g 105 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAKFYGATDILN-YKNGHIEDQVMKLTNGKGVDRVIMAGG 105 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHHHHTCSEEEC-GGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred CCEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHHhhCcccccc-ccchhHHHHHHHHhhccCcceEEEccC
Confidence 37888899996 88888888762 2235889999999999999888543331 1111110 12345999876522
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.+..+.|+|+|.+++...
T Consensus 106 -------~~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 106 -------GSETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp -------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred -------CHHHHHHHHHHHhcCCEEEEEee
Confidence 12467788899999999998764
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.90 E-value=0.025 Score=53.91 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=49.0
Q ss_pred EEEeccccchhhhhhhhhc-CCCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCC--CccccccccCccccccC
Q 005959 518 NVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYP--RTYDLVHAEGLLSLESG 594 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ--~tyDl~H~~~~~~~~~~ 594 (667)
+|||+|||+|-++|-|... +..|.++-+-+.-....-..+.+.|+-.+.--....+.-+| ..||.|++.+.....
T Consensus 81 ~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~i-- 158 (215)
T d1jg1a_ 81 NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKI-- 158 (215)
T ss_dssp CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSC--
T ss_pred eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccccC--
Confidence 8999999999999877642 22244333322111000011222344222222223333334 679999985544432
Q ss_pred CCCCCCcchhheeccccccCCcEEEE
Q 005959 595 HRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
..-|++ -|+|||.+|.
T Consensus 159 -------p~~l~~---qL~~gGrLv~ 174 (215)
T d1jg1a_ 159 -------PEPLIE---QLKIGGKLII 174 (215)
T ss_dssp -------CHHHHH---TEEEEEEEEE
T ss_pred -------CHHHHH---hcCCCCEEEE
Confidence 244554 4899999986
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=91.74 E-value=0.25 Score=50.38 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=62.8
Q ss_pred CCEEEEeCCCCchHHHHHhhc---------------CCceeEEEEecCCHHHHHHHHHc------CCCceEE---eeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGSQVQLTLER------GLPAMIG---SFASK 309 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~---------------g~~~~sV~gvD~S~~ml~~A~er------gl~~~~~---~~da~ 309 (667)
.-+|.|+||.+|..|..+.+. ..+...|.-.|.-.+--...-+. ..+..+. -++..
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 357999999999887544332 12344555555543222211110 0111232 22333
Q ss_pred CCCCCCCCccEEEecccccccccC---------------------------------HHHHHHHHHhcccCCeEEEEEeC
Q 005959 310 QLPYPSLSFDMLHCARCGVDWDQK---------------------------------DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 310 ~Lpfpd~sFDlV~~s~~ll~~~~d---------------------------------~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.=-||++|.|++||+.+ +||... ...+|+-=.+-|+|||.++++..
T Consensus 132 ~rLfP~~Slh~~~Ss~a-lHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhcCCCCceEEeeehhh-hhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 33489999999999987 888521 11366666777899999999876
Q ss_pred CCC
Q 005959 357 LTN 359 (667)
Q Consensus 357 ~~~ 359 (667)
+..
T Consensus 211 gr~ 213 (359)
T d1m6ex_ 211 GRR 213 (359)
T ss_dssp ECS
T ss_pred ccC
Confidence 543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.66 E-value=0.15 Score=45.27 Aligned_cols=92 Identities=11% Similarity=0.076 Sum_probs=61.2
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----CCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----pfpd~sFDlV~~s~~l 327 (667)
..+||=+|+|. |.++..+++.. ...|+++|.++.-++.+++-|....+. ...+.. ....+.+|.|.+...
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~~~~i~~~~~- 103 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLGASLTVN-ARQEDPVEAIQRDIGGAHGVLVTAVS- 103 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEE-TTTSCHHHHHHHHHSSEEEEEECCSC-
T ss_pred CCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccCcccccc-ccchhHHHHHHHhhcCCccccccccc-
Confidence 47888899984 77777777762 256889999999999999887543332 111110 011233455554422
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
...+....+.|+|||.+++...
T Consensus 104 -------~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 104 -------NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp -------HHHHHHHHTTEEEEEEEEECCC
T ss_pred -------chHHHHHHHHhcCCcEEEEEEe
Confidence 3567888999999999998754
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.22 E-value=0.28 Score=48.98 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecc
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFAS 308 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da 308 (667)
....+.+.+.+..... .......+|||||+|.|.+|..|++.+ ....++++|.++...+..+++. -+..+...|.
T Consensus 23 ~~i~~~Iv~~~~l~~~--~~~~~~~~VlEIGPG~G~LT~~Ll~~~-~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~ 99 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKT--YKHPEELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP 99 (322)
T ss_dssp HHHHHHHHHHHCGGGT--CCCTTTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred HHHHHHHHHHhcCCcc--ccccCCCeEEEECCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHhccCCCcEEEeCch
Confidence 4455566666654332 111235789999999999999998763 1246899999999988876652 2445555554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.20 E-value=0.22 Score=45.12 Aligned_cols=97 Identities=11% Similarity=-0.043 Sum_probs=67.2
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC------CCCCCccEEEecc
Q 005959 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp------fpd~sFDlV~~s~ 325 (667)
.+.+||=+|||. |.++..+++.- -...|+..|.++.-++.|++-|....+..-..+... ...+.+|+|+-.-
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~ 106 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA 106 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred CCCEEEEECCChHHHHHHHHHHHh-CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEec
Confidence 448899999997 88888888762 234588899999999999998865443211111110 1235689987542
Q ss_pred cccccccCHHHHHHHHHhcccCC-eEEEEEeCC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPG-GYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPG-G~Lvis~p~ 357 (667)
. .+..+.+..+.|+|| |.+++....
T Consensus 107 G-------~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 107 G-------TAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp C-------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred c-------cchHHHHHHHHhhcCCeEEEecCCC
Confidence 1 246889999999996 999987653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.29 Score=43.67 Aligned_cols=97 Identities=10% Similarity=-0.005 Sum_probs=65.7
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEe
Q 005959 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~sFDlV~~ 323 (667)
+..+||=+|||. |.++..+++.- -...|+.+|.++.-++.|++.|....+.. +.+... -....+|+|+-
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~-~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQI-SKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEEC-SSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHHHhCCcccccc-cccccccccccccccCCCCceEEEe
Confidence 347899999985 56666666551 22368999999999999998875543321 111100 01246899886
Q ss_pred cccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.-. ....+....+.+++||.+++.....
T Consensus 104 ~~G-------~~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 104 CTG-------AEASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp CSC-------CHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred ccC-------CchhHHHHHHHhcCCCEEEEEecCC
Confidence 532 2357889999999999999976543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=90.70 E-value=0.024 Score=54.86 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=61.1
Q ss_pred CCceeEEEeccccchhhhhhhhhcCCC---eEEEEeecCCCCCchhhHhc-ccccccccccccCCCCCCCccccccccCc
Q 005959 513 YNMVRNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMILD-RGFVGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 513 ~~~~R~vlDm~~~~g~faa~l~~~~~~---vwvmnv~p~~~~~~l~~~~~-RGlig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
+.++++|+|+|||.|.++.++++. .| +.|... +..+..+-. -.+--+-||.=++.| .+|++...++
T Consensus 78 ~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dl-----p~vi~~~~~~~rv~~~~gD~f~~~p----~aD~~~l~~v 147 (244)
T d1fp2a2 78 FDGLESIVDVGGGTGTTAKIICET-FPKLKCIVFDR-----PQVVENLSGSNNLTYVGGDMFTSIP----NADAVLLKYI 147 (244)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHH-CTTCEEEEEEC-----HHHHTTCCCBTTEEEEECCTTTCCC----CCSEEEEESC
T ss_pred ccCceEEEEecCCccHHHHHHHHh-CCCCeEEEecC-----HHHHHhCcccCceEEEecCcccCCC----CCcEEEEEee
Confidence 356899999999999999999974 33 334433 211111111 113333455434333 5799999999
Q ss_pred cccccCCCCCCCcchhheeccccccCC---cEEEEEc
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPE---GWVIIRD 622 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~---G~~i~~d 622 (667)
+..|.. +.|. .||--+=+.|+|| |.++|-|
T Consensus 148 LHdw~d--~~~~--~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 148 LHNWTD--KDCL--RILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp GGGSCH--HHHH--HHHHHHHHHHSGGGCCCEEEEEE
T ss_pred cccCCh--HHHH--HHHHHHHHHcCcccCCcEEEEEE
Confidence 999973 3333 4677777889999 5566643
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.98 E-value=0.044 Score=55.18 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=18.5
Q ss_pred cchhheeccccccCCcEEEEEc
Q 005959 601 TLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 601 ~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+...|.||=|+|+|||.+|..+
T Consensus 245 ~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 245 VDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHHHHHTTCCTTCEEEESS
T ss_pred HHHHHHHHHHhCCCCcEEEEec
Confidence 3467899999999999999743
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.93 E-value=0.039 Score=52.76 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=16.5
Q ss_pred eEEEeccccchhhhhhhhh
Q 005959 517 RNVLDMNAHFGGFNSALLE 535 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~ 535 (667)
-+|||+|||+|-++|.|..
T Consensus 82 ~~VLeIGtGsGY~ta~la~ 100 (223)
T d1r18a_ 82 ARILDVGSGSGYLTACFYR 100 (223)
T ss_dssp CEEEEESCTTSHHHHHHHH
T ss_pred CeEEEecCCCCHHHHHHHH
Confidence 3799999999999988864
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.91 E-value=0.029 Score=56.45 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=61.6
Q ss_pred eEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCCCchhhHh----ccccccccc-------ccccCCCCCCCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPMIL----DRGFVGVLH-------DWCEAFPTYPRTYDLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~~~l~~~~----~RGlig~~~-------~~c~~f~typ~tyDl~H 584 (667)
.+|||++||+|+|+.++...+ +.|+.+=+.| ..+..+- .-|+-...+ +|-+.++.-..+||+|=
T Consensus 147 ~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~----~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSP----RAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCSEEEEEESCH----HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CeeecccCcccchhhhhhhcCCcEEEeecCCH----HHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 379999999999999887632 1233332222 2232221 124422222 22222332336899987
Q ss_pred ccCc-cccccCCC--CCCCcchhheeccccccCCcEEEEEcC------HHHHHHHHHHHhhC
Q 005959 585 AEGL-LSLESGHR--HRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRL 637 (667)
Q Consensus 585 ~~~~-~~~~~~~~--~~c~~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~ 637 (667)
++-- |+...... .......++...=++|+|||.+++... .+..+.+.+-+...
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~ 284 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKA 284 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHc
Confidence 7543 22211000 001223577778899999999998642 23345555444433
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.74 E-value=0.31 Score=42.90 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=61.4
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC----C-CCCCCccEEEecccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL----P-YPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L----p-fpd~sFDlV~~s~~l 327 (667)
..+||=+|||. |..+..+++.. ...++.++.++.-++.+++.|....+...+ ... . ...+.+|+|++..
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~-- 102 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKELGADLVVNPLK-EDAAKFMKEKVGGVHAAVVTAV-- 102 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTCSEEECTTT-SCHHHHHHHHHSSEEEEEESSC--
T ss_pred CCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhhcCcceeccccc-chhhhhcccccCCCceEEeecC--
Confidence 47899999985 66666666652 235888999999999999877554332111 100 0 1233445554331
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
....+....+.|+|||.+++.....
T Consensus 103 ------~~~~~~~a~~~l~~~G~i~~~g~~~ 127 (168)
T d1rjwa2 103 ------SKPAFQSAYNSIRRGGACVLVGLPP 127 (168)
T ss_dssp ------CHHHHHHHHHHEEEEEEEEECCCCS
T ss_pred ------CHHHHHHHHHHhccCCceEeccccc
Confidence 1357889999999999999876543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.50 E-value=0.21 Score=44.44 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=63.7
Q ss_pred CCCEEEEeCC-C-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC------CCCCCccEEEec
Q 005959 253 GVRTILDIGC-G-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGC-G-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp------fpd~sFDlV~~s 324 (667)
+..+||=+|| | .|.++..+++.. ....|+.+|.++.-++.+++.|....+. .+..+.. ...+.||+|+..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRAGADYVIN-ASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHcCCceeec-cCCcCHHHHHHHHhhcccchhhhcc
Confidence 3478999997 3 566666666541 1246889999999999999887543332 1111110 123569999865
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.. ....+....+.|+|||.+++...
T Consensus 105 ~g-------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 105 NN-------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp CC-------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred cc-------cchHHHhhhhhcccCCEEEEecc
Confidence 32 24577888999999999998754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.42 E-value=0.23 Score=44.69 Aligned_cols=94 Identities=12% Similarity=0.038 Sum_probs=63.4
Q ss_pred CCCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----CCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGt-G~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----pfpd~sFDlV~~s~ 325 (667)
+..+||=+|||. |.++..+++. |. ..++..|.++.-++.+++.|....+. ...+.. .+.++.||+|+-.-
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~--~~v~~~~~~~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t~gg~D~vid~~ 104 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGA--SIIIAVDIVESRLELAKQLGATHVIN-SKTQDPVAAIKEITDGGVNFALEST 104 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCEEEEeCCCHHHhhhhhccccccc--ceeeeeccHHHHHHHHHHcCCeEEEe-CCCcCHHHHHHHHcCCCCcEEEEcC
Confidence 457899999984 5566666654 43 34778899999999999888543332 111111 12345799988542
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. ....+.+..++++|+|.+++...
T Consensus 105 G-------~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 105 G-------SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp C-------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred C-------cHHHHHHHHhcccCceEEEEEee
Confidence 1 23578889999999999998753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.20 E-value=0.13 Score=46.04 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=61.5
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
+.+||=+|||. |.++..+++.- ...++.+|.+++-++.+++.|....+...+........+.||+|+-.-. -
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g-~---- 103 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA-A---- 103 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS-S----
T ss_pred CCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee-c----
Confidence 47899999984 77888888752 2345678888888888888876544321111111122357998886522 1
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
...+....+.|+|||.+++...
T Consensus 104 --~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 104 --PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp --CCCHHHHHTTEEEEEEEEECCC
T ss_pred --chhHHHHHHHHhcCCEEEEecc
Confidence 1245677889999999998764
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.16 E-value=0.31 Score=45.20 Aligned_cols=114 Identities=9% Similarity=0.036 Sum_probs=63.4
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccccccccccCCCCCCCccccccccCccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
+|||+|||+|+++.+++..+- . +|+-+|-. ..+..+.+ -|+- .--.+.-...++..||+|=++--|...
T Consensus 49 ~vLDlg~GtG~l~i~a~~~g~-~---~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~~~~~~~fD~Vi~nPP~~~~ 122 (201)
T d1wy7a1 49 VVADLGAGTGVLSYGALLLGA-K---EVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDVSEFNSRVDIVIMNPPFGSQ 122 (201)
T ss_dssp EEEEETCTTCHHHHHHHHTTC-S---EEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCGGGCCCCCSEEEECCCCSSS
T ss_pred EEEECcCcchHHHHHHHHcCC-C---EEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECchhhhCCcCcEEEEcCccccc
Confidence 799999999999876665321 1 23333333 33433332 1221 111122233446789999887766543
Q ss_pred cCCCCCCCcchhheeccccccCCcE--EEEEcCHHHHHHHHHHHhhCCCeeEEe
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGW--VIIRDTARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~--~i~~d~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
. ....+.++. +.+.+++. .+-.......+-+++++..-.|.+...
T Consensus 123 ~---~~~d~~~l~----~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 123 R---KHADRPFLL----KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp S---TTTTHHHHH----HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred c---ccccHHHHH----HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEEE
Confidence 3 334443332 23344443 344556666677888888888876554
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.16 E-value=0.029 Score=50.11 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=51.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---ccccc-ccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLH-DWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig~~~-~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||++||+|+|+-..+..+ . =+|.-+|.. ..+..+-+ -|+ +-+++ |.-+.+......||+|.++-
T Consensus 16 ~~vlDl~~GtG~~~iea~~rg--a--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRG--M--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTT--C--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CeEEEcCCccCHHHHHHHHhC--c--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 479999999999996444322 1 144555554 33332221 233 22222 22222233347899999865
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
-|.... ....+ +.+.+ .++|+|+|.+|+..
T Consensus 92 Py~~~~---~~~~l-~~i~~-~~~L~~~g~iiiE~ 121 (152)
T d2esra1 92 PYAKET---IVATI-EALAA-KNLLSEQVMVVCET 121 (152)
T ss_dssp SSHHHH---HHHHH-HHHHH-TTCEEEEEEEEEEE
T ss_pred hhccch---HHHHH-HHHHH-CCCcCCCeEEEEEe
Confidence 443221 11112 23333 48999999999953
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.05 E-value=1.1 Score=39.31 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=61.1
Q ss_pred EEEEeCCCC--chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 256 TILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 256 ~VLDIGCGt--G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
+|+=||||. |+++..|.+.++ ...|+++|.+++.++.+++.+......... . ...+...|+|+..-- ...
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~-~--~~~~~~~dlIila~p----~~~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDLGIIDEGTTSI-A--KVEDFSPDFVMLSSP----VRT 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHTTSCSEEESCG-G--GGGGTCCSEEEECSC----HHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECChHHHHHHHHhhcchhhhhhh-h--hhhccccccccccCC----chh
Confidence 578899984 456667777664 357999999999999999987644333111 1 122345799986622 123
Q ss_pred HHHHHHHHHhcccCCeEEEEE
Q 005959 334 DGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis 354 (667)
....+.++...++++-.++-.
T Consensus 75 ~~~vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp HHHHHHHHHHHSCTTCEEEEC
T ss_pred hhhhhhhhhcccccccccccc
Confidence 456889999999988665443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=87.62 E-value=0.13 Score=48.07 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=51.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCCCCccccccccCccccccCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
++|||+|||+|.++-++...+-. +|+-+|-. ..+..+-+. + .-..--|.-+...|..||+|=++--|....
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~----~V~~vDid~~a~~~ar~N-~-~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~-- 121 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAE----SVTAFDIDPDAIETAKRN-C-GGVNFMVADVSEISGKYDTWIMNPPFGSVV-- 121 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS----EEEEEESCHHHHHHHHHH-C-TTSEEEECCGGGCCCCEEEEEECCCC------
T ss_pred CEEEEeCCCCcHHHHHHHHcCCC----cccccccCHHHHHHHHHc-c-ccccEEEEehhhcCCcceEEEeCcccchhh--
Confidence 58999999999887544432111 34444543 444444332 1 111112223344568899998876664322
Q ss_pred CCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHh
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTT 635 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~ 635 (667)
...++ .+ ++..+.+++.+...-.....+-+++...
T Consensus 122 -~~~D~--~f--l~~a~~~~~~iy~ih~~~~~~~i~~~~~ 156 (197)
T d1ne2a_ 122 -KHSDR--AF--IDKAFETSMWIYSIGNAKARDFLRREFS 156 (197)
T ss_dssp ----CH--HH--HHHHHHHEEEEEEEEEGGGHHHHHHHHH
T ss_pred -hhchH--HH--HHHHHhcCCeEEEehhhhHHHHHHHHhh
Confidence 22222 22 3455666655443322333334444433
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=86.84 E-value=0.48 Score=45.42 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=93.5
Q ss_pred ccchhhhHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEeccccch--hhhhhhhhcCCCeEEEEeecCCCC-
Q 005959 475 AEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGT- 551 (667)
Q Consensus 475 ~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~~g--~faa~l~~~~~~vwvmnv~p~~~~- 551 (667)
....+.|.+.+-+-...+. .+ +...-.+++|+|+|-| |.--|++- |=+ +|.-+|..
T Consensus 46 ~~~~~i~~rHi~DSl~~~~-~~---------------~~~~~~~ilDiGSGaGfPGi~laI~~---p~~--~v~Lves~~ 104 (239)
T d1xdza_ 46 TEKKEVYLKHFYDSITAAF-YV---------------DFNQVNTICDVGAGAGFPSLPIKICF---PHL--HVTIVDSLN 104 (239)
T ss_dssp CSHHHHHHHTHHHHHGGGG-TS---------------CGGGCCEEEEECSSSCTTHHHHHHHC---TTC--EEEEEESCH
T ss_pred CCHHHHHHHhccchhhhhh-hh---------------cccCCCeEEeecCCCchHHHHHHHhC---CCc--cceeecchH
Confidence 3445678777766554332 22 2234568999999866 33334332 222 34444443
Q ss_pred ---Cchh-hHhcccc--cccccccccCCCC---CCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEE-
Q 005959 552 ---NHLP-MILDRGF--VGVLHDWCEAFPT---YPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR- 621 (667)
Q Consensus 552 ---~~l~-~~~~RGl--ig~~~~~c~~f~t---yp~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~- 621 (667)
+=|. ++-+=|| +=++|..-|.+.. +...||+|=|- .-..+..++-=...+|+|||.+++-
T Consensus 105 KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR----------Ava~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 105 KRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR----------AVARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE----------CCSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh----------hhhCHHHHHHHHhhhcccCCEEEEEC
Confidence 2222 4455577 4568888887753 33579998772 3344445666678999999999984
Q ss_pred --cCHHHHHHHHHHHhhCCCeeEEeeec----cCCCccEEEEEcc
Q 005959 622 --DTARLIESARALTTRLKWDARVIEIE----SNSDERLLICQKP 660 (667)
Q Consensus 622 --d~~~~~~~~~~~~~~~~W~~~~~~~~----~~~~~~~li~~K~ 660 (667)
+-.+.+++.++..+.+.++......- .+.+..+++.+|.
T Consensus 175 G~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K~ 219 (239)
T d1xdza_ 175 AASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKI 219 (239)
T ss_dssp CC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred CCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEEEC
Confidence 45566777788888888876543322 2223457787764
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.34 E-value=0.55 Score=41.82 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=60.8
Q ss_pred CCCEEEEeCC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC------CCCCCccEEEec
Q 005959 253 GVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGC--GtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp------fpd~sFDlV~~s 324 (667)
+..+||=.|+ |.|.++..+++. ....+.++..+++..+.+++.|....+. ....++. .....||+|+..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~--~g~~vi~~~~~~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~t~~~g~d~v~d~ 101 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKM--IGARIYTTAGSDAKREMLSRLGVEYVGD-SRSVDFADEILELTDGYGVDVVLNS 101 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHTTCCSEEEE-TTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCEEEEECCCCCcccccchhhcc--ccccceeeeccccccccccccccccccc-CCccCHHHHHHHHhCCCCEEEEEec
Confidence 3478998873 367888888876 2244566666778888888877554332 1111110 134579999976
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
-. ...+.+..++|+++|+++...
T Consensus 102 ~g--------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 102 LA--------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp CC--------THHHHHHHHTEEEEEEEEECS
T ss_pred cc--------chHHHHHHHHhcCCCEEEEEc
Confidence 32 246778889999999999863
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=83.62 E-value=1.1 Score=40.07 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=64.3
Q ss_pred CCCEEEEeCCC--CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC------CCCCCccEEEec
Q 005959 253 GVRTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCG--tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp------fpd~sFDlV~~s 324 (667)
++++||=.|++ .|..+..+++.. ...++++..+++.++.+++.|....+..-+ +... .....+|+|+-.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~-~~~~~~~~~~~~~~Gvd~v~D~ 105 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIGFDAAFNYKT-VNSLEEALKKASPDGYDCYFDN 105 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEEETTS-CSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhhhhhhhccccc-ccHHHHHHHHhhcCCCceeEEe
Confidence 34889988875 567888888762 356888888999999999888655443211 1110 123469998765
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
-. ...+.+..+.|+|||.+++..
T Consensus 106 vG--------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 106 VG--------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp SC--------HHHHHHHGGGEEEEEEEEECC
T ss_pred cC--------chhhhhhhhhccCCCeEEeec
Confidence 22 357889999999999999864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=83.19 E-value=2.7 Score=36.60 Aligned_cols=87 Identities=17% Similarity=0.069 Sum_probs=58.2
Q ss_pred EEEEeCCC--CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 256 TILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 256 ~VLDIGCG--tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
+|.=||+| -+.++..|.+.|+ .|+++|.+++.++.+++.+.-.... -+.+.+ ...|+|+.+- . ...
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~---~V~~~d~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~DiIilav---p-~~~ 69 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH---YLIGVSRQQSTCEKAVERQLVDEAG-QDLSLL----QTAKIIFLCT---P-IQL 69 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHTTSCSEEE-SCGGGG----TTCSEEEECS---C-HHH
T ss_pred EEEEEeecHHHHHHHHHHHHCCC---EEEEEECCchHHHHHHHhhccceee-eecccc----cccccccccC---c-Hhh
Confidence 56778887 3456777777765 4789999999999998887533221 111222 3579988642 1 123
Q ss_pred HHHHHHHHHhcccCCeEEEEE
Q 005959 334 DGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis 354 (667)
.+.+++++...|+++-+++-.
T Consensus 70 ~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 70 ILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp HHHHHHHHGGGSCTTCEEEEC
T ss_pred hhhhhhhhhhhcccccceeec
Confidence 457899999999988866543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=81.15 E-value=1.3 Score=39.07 Aligned_cols=93 Identities=9% Similarity=0.053 Sum_probs=62.4
Q ss_pred CCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC-----CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-----YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp-----fpd~sFDlV~~s~~ 326 (667)
..+||=+|+|. |.++..+++. |. ..++.+|.++.-++.+++.+....+. ...+... ...+.+|+|+-.-.
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~--~~vv~~~~~~~k~~~~~~~ga~~~i~-~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAERLGADHVVD-ARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHHHTTCSEEEE-TTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcC--cccccccchhHHHHHHhhcccceeec-CcccHHHHHHHhhCCCCceEEEEecC
Confidence 47899999985 5566666654 42 35788999999999998877443321 1111100 12345898886532
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+....+.|++||.+++...
T Consensus 110 -------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 110 -------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp -------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred -------cchHHHHHHHHHhCCCEEEEEeC
Confidence 23578889999999999998764
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.83 E-value=1.1 Score=43.51 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=53.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCC---CCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY---PSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpf---pd~sFDlV~~s~ 325 (667)
+.+|+|+=||.|.+...|.+.|+..-.+.++|+.+..++..+.+.....+...|+..+.. +...+|+++.+.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 368999999999999888777876555778999999988777665445555566665542 223689998764
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=80.50 E-value=0.32 Score=48.50 Aligned_cols=121 Identities=13% Similarity=0.074 Sum_probs=60.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc--------ccccccccCCCCCCCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV--------GVLHDWCEAFPTYPRTYDLV 583 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli--------g~~~~~c~~f~typ~tyDl~ 583 (667)
+.|||+.||+|||+-++... ..--|.+| |.. ..+..+-+ .|+= +-.-+|.+.+..-.++||+|
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~-ga~~V~~v---D~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMG-GAMATTSV---DLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHT-TBSEEEEE---ESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CceeecCCCCcHHHHHHHhC-CCceEEEe---cCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 57999999999998765542 22234333 332 22332221 2331 11222322222223679999
Q ss_pred cccCc-cccccCCCCCCC----cchhheeccccccCCcEEEEEcC------HHHHHHHHHHHhhCCCeeEE
Q 005959 584 HAEGL-LSLESGHRHRCS----TLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLKWDARV 643 (667)
Q Consensus 584 H~~~~-~~~~~~~~~~c~----~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~W~~~~ 643 (667)
=++-= |+.-.. ..=. ...++-..=++|+|||.+++.-. .+..+.+.+.+..-.+....
T Consensus 222 i~DPP~f~~~~~--~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~ 290 (317)
T d2b78a2 222 IIDPPSFARNKK--EVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLD 290 (317)
T ss_dssp EECCCCC-------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEcChhhccchh--HHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEE
Confidence 87522 332110 1111 12455556688999999999632 23344444444444444443
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=80.48 E-value=0.4 Score=43.83 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=70.5
Q ss_pred eeEEEeccccchhhhhhhhhcC---CCeEEEEeecCCCCCchhhHhcccccccccc---cccCCCCCCCccccccccCcc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFVGVLHD---WCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~---~c~~f~typ~tyDl~H~~~~~ 589 (667)
-.+|+|+||+-|||.-++.+.. ..|+..-..|.+.-... .+-.|-+..... ..+.+.. ..+|+|=++..+
T Consensus 23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~--~~~~~d~~~~~~~~~~~~~~~~--~~~DlVlSD~ap 98 (180)
T d1ej0a_ 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGV--DFLQGDFRDELVMKALLERVGD--SKVQVVMSDMAP 98 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTE--EEEESCTTSHHHHHHHHHHHTT--CCEEEEEECCCC
T ss_pred CCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCc--eEeecccccchhhhhhhhhccC--cceeEEEecccc
Confidence 4589999999999998877521 22444444443322211 111222211111 1111221 468999988876
Q ss_pred ccccCCCCCC-----Ccc---hhheeccccccCCcEEEEE--cCHHHHHHHHHHHhhCCCeeEEeeecc---CCCccEEE
Q 005959 590 SLESGHRHRC-----STL---DIFTEIDRILRPEGWVIIR--DTARLIESARALTTRLKWDARVIEIES---NSDERLLI 656 (667)
Q Consensus 590 ~~~~~~~~~c-----~~~---~~l~E~dRiLRP~G~~i~~--d~~~~~~~~~~~~~~~~W~~~~~~~~~---~~~~~~li 656 (667)
.... .+- .+. ..|.=..++|+|||.||+. +..+. +.+...++.+=-++.+.+-.. .+.|..+|
T Consensus 99 ~~sg---~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~-~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv 174 (180)
T d1ej0a_ 99 NMSG---TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGF-DEYLREIRSLFTKVKVRKPDSSRARSREVYIV 174 (180)
T ss_dssp CCCS---CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTH-HHHHHHHHHHEEEEEEECCTTSCTTCCEEEEE
T ss_pred hhcc---cchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccH-HHHHHHHHhhcCEEEEECCCCcccCCceEEEE
Confidence 5421 111 111 1222246899999999985 33322 233333333333455554443 35789999
Q ss_pred EEc
Q 005959 657 CQK 659 (667)
Q Consensus 657 ~~K 659 (667)
|+.
T Consensus 175 ~~g 177 (180)
T d1ej0a_ 175 ATG 177 (180)
T ss_dssp EEE
T ss_pred Eec
Confidence 874
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=80.44 E-value=0.29 Score=43.98 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=58.4
Q ss_pred CCEEEEeCC-C-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeeccc-CCCCCCCCccEEEeccccccc
Q 005959 254 VRTILDIGC-G-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-QLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 254 ~~~VLDIGC-G-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~-~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
..+||=.|+ | .|.++..+++.. ...+++++.+++.++.+++.|....+...+.. .. -..+.+|+|+-. +
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~-~~~~g~D~v~d~-~---- 99 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLALGAEEAATYAEVPERA-KAWGGLDLVLEV-R---- 99 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHH-HHTTSEEEEEEC-S----
T ss_pred CCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccccccceeeehhhhhhhh-hccccccccccc-c----
Confidence 478999885 3 477888888762 24577888888888889888865443221110 11 123469998753 1
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.+ .+.+..+.|+|||.+++..
T Consensus 100 G~----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 100 GK----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp CT----THHHHHTTEEEEEEEEEC-
T ss_pred ch----hHHHHHHHHhcCCcEEEEe
Confidence 11 3567788999999998753
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=80.21 E-value=1.1 Score=39.64 Aligned_cols=93 Identities=12% Similarity=0.027 Sum_probs=64.1
Q ss_pred CCCEEEEeCCC--CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC------CCCCCccEEEec
Q 005959 253 GVRTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCG--tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp------fpd~sFDlV~~s 324 (667)
+..+||=.|+| .|.++..+++. ....|++++.+++-.+.+++.|....+. ...+++. -....+|+|+..
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~--~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~-~~~~d~~~~v~~~t~g~g~d~v~d~ 104 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALKAGAWQVIN-YREEDLVERLKEITGGKKVRVVYDS 104 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCEEEEEccccccchHHHHHHHH--hCCeEeecccchHHHHHHHhcCCeEEEE-CCCCCHHHHHHHHhCCCCeEEEEeC
Confidence 34789998666 57888888876 2356899999999999999888654332 1111110 124579998876
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-. ...+......|+|+|.+++...
T Consensus 105 ~g--------~~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 105 VG--------RDTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp SC--------GGGHHHHHHTEEEEEEEEECCC
T ss_pred cc--------HHHHHHHHHHHhcCCeeeeccc
Confidence 32 1256788899999999887544
|