Citrus Sinensis ID: 005963
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | 2.2.26 [Sep-21-2011] | |||||||
| Q6R3K6 | 676 | Probable metal-nicotianam | yes | no | 0.995 | 0.982 | 0.780 | 0.0 | |
| Q6R3K8 | 670 | Probable metal-nicotianam | no | no | 0.995 | 0.991 | 0.744 | 0.0 | |
| Q7XRV2 | 678 | Probable metal-nicotianam | yes | no | 0.970 | 0.954 | 0.738 | 0.0 | |
| Q7XRV1 | 668 | Probable metal-nicotianam | no | no | 0.962 | 0.961 | 0.632 | 0.0 | |
| Q5JQD7 | 717 | Probable metal-nicotianam | no | no | 0.956 | 0.889 | 0.578 | 0.0 | |
| Q9SHY2 | 688 | Probable metal-nicotianam | no | no | 0.976 | 0.946 | 0.571 | 0.0 | |
| Q7XKF4 | 724 | Probable metal-nicotianam | no | no | 0.967 | 0.890 | 0.562 | 0.0 | |
| Q6H7J6 | 727 | Probable metal-nicotianam | no | no | 0.965 | 0.885 | 0.557 | 0.0 | |
| Q7X660 | 712 | Probable metal-nicotianam | no | no | 0.968 | 0.907 | 0.556 | 0.0 | |
| Q0J932 | 686 | Probable metal-nicotianam | no | no | 0.977 | 0.950 | 0.545 | 0.0 |
| >sp|Q6R3K6|YSL6_ARATH Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1090 bits (2820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/673 (78%), Positives = 599/673 (89%), Gaps = 9/673 (1%)
Query: 1 MGTEV----EVSEPLI----EKITAEEDQLIPEWKDQITIRGLAVSAIMGTLFCIITHRL 52
MGTE+ E+SE L+ EK ++ +PEWK+QITIRGL VSA++GTLFCIITH+L
Sbjct: 1 MGTEIPRSAEISEALLPPESEKTVTATEEHVPEWKEQITIRGLTVSALLGTLFCIITHKL 60
Query: 53 NLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLGFSTKPFTRQENTVIQTCVVACYGLAAS 112
NLTVGIIPSLN+AAGLLGF VKSWT FLSKLGF+ KPFT+QENTVIQTCVVACYGLA S
Sbjct: 61 NLTVGIIPSLNVAAGLLGFFFVKSWTGFLSKLGFTVKPFTKQENTVIQTCVVACYGLAFS 120
Query: 113 GGFGSSFLAMDKRTYKLIGTEYPGNRAEDVKNPGLGWMIVFMFVVSFVGLFSLVALRKVM 172
GGFGS +AMD++TYKLIG +YPGN AEDV NPGL WMI F+FVVSF+GLFSLV LRKVM
Sbjct: 121 GGFGSYLIAMDEKTYKLIGADYPGNHAEDVINPGLWWMIGFLFVVSFLGLFSLVPLRKVM 180
Query: 173 ILDGKLTYPSGTATAVLINGFHTNAGAELAGMQVRCIGKYLSISFLCSSFKWFFSGVGDS 232
+LD KLTYPSGTATA+LIN FHTN GAELAG QV+C+GKYLS+S + S FKWFFSG+GD+
Sbjct: 181 VLDYKLTYPSGTATAMLINSFHTNTGAELAGNQVKCLGKYLSLSLIWSCFKWFFSGIGDA 240
Query: 233 CGFDNFPSFGLILFKNTFYFDFSPTYVGCGLICPRIVNCSVLLGAIVSWGFLWPYISQHA 292
CGFDNFP+ GL LFKNTFYFDFSPTY+GCGLICP IVNCSVLLGAI+SWG LWP++SQHA
Sbjct: 241 CGFDNFPTLGLTLFKNTFYFDFSPTYIGCGLICPHIVNCSVLLGAIISWGILWPFVSQHA 300
Query: 293 GDWYPADLGNSDFKGLYGYKVFIAISLILGDGLYNLIKIISVTFKELCNKRTKVSKLPID 352
GDWYPADLG++DFKGLYGYKVFIAI++ILGDGLYNL+KII+VT KELC+ R++ LPI
Sbjct: 301 GDWYPADLGSNDFKGLYGYKVFIAIAIILGDGLYNLVKIIAVTVKELCSSRSRRLNLPIV 360
Query: 353 NE-IQDTESSRLLIDQKKRENVFLKDGIPTWFAASGYVGLAAISTATIPTIFPPLKWYLV 411
+ + D+E+S +L+ +KKR+ VFLKD IP FA +GYVGLAAISTATIP IFPPLKWY V
Sbjct: 361 TDGVDDSEASEILLVKKKRDEVFLKDRIPLEFAIAGYVGLAAISTATIPIIFPPLKWYFV 420
Query: 412 LLLYLIAPALAFCNSYGAGLTDCSLSLTYAKIGLFIIASLVGTNGGVIAGLAACGVMMSI 471
L Y IAPALAFCNSYG GLTD SL+ TY KIGLFIIAS+VG++GGVIAGLAACGVMMSI
Sbjct: 421 LCSYFIAPALAFCNSYGTGLTDWSLASTYGKIGLFIIASVVGSDGGVIAGLAACGVMMSI 480
Query: 472 VSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVFAPLTFWMYWTAFDIGSPDGPYK 531
VSTAADLMQDFKTGYLTLSSAKSMFVSQL+GTAMGCV APLTFW++WTAFDIG P+GPYK
Sbjct: 481 VSTAADLMQDFKTGYLTLSSAKSMFVSQLVGTAMGCVIAPLTFWLFWTAFDIGDPNGPYK 540
Query: 532 APYAVILREMAILGIEGFSELPKHCLALCCGFFVAALVINLLRDVIPEKISKFIPVPMAM 591
APYAVI REMAILGIEGF+ELPKHCLALC GFF+AAL++NLLRD+ P KIS+FIP+PMAM
Sbjct: 541 APYAVIFREMAILGIEGFAELPKHCLALCYGFFIAALIVNLLRDITPPKISQFIPIPMAM 600
Query: 592 AIPFFVGAYLAIDMFVGTVILFIWERINRKDSEDYAGAVASGLICGDGIWTMPSAVLSIF 651
A+PF++GAY AIDMFVGTVILF+WERINRKD+ED+AGAVASGLICGDGIWT+PSA+LSI
Sbjct: 601 AVPFYIGAYFAIDMFVGTVILFVWERINRKDAEDFAGAVASGLICGDGIWTIPSAILSIL 660
Query: 652 SINPPICMYFGPT 664
INPPICMYFGP+
Sbjct: 661 RINPPICMYFGPS 673
|
May be involved in the transport of nicotianamine-chelated metals. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6R3K8|YSL4_ARATH Probable metal-nicotianamine transporter YSL4 OS=Arabidopsis thaliana GN=YSL4 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q7XRV2|YSL6_ORYSJ Probable metal-nicotianamine transporter YSL6 OS=Oryza sativa subsp. japonica GN=YSL6 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q7XRV1|YSL5_ORYSJ Probable metal-nicotianamine transporter YSL5 OS=Oryza sativa subsp. japonica GN=YSL5 PE=2 SV=3 | Back alignment and function description |
|---|
| >sp|Q5JQD7|YSL12_ORYSJ Probable metal-nicotianamine transporter YSL12 OS=Oryza sativa subsp. japonica GN=YSL12 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9SHY2|YSL7_ARATH Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q7XKF4|YSL13_ORYSJ Probable metal-nicotianamine transporter YSL13 OS=Oryza sativa subsp. japonica GN=YSL13 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q6H7J6|YSL14_ORYSJ Probable metal-nicotianamine transporter YSL14 OS=Oryza sativa subsp. japonica GN=YSL14 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q7X660|YSL11_ORYSJ Probable metal-nicotianamine transporter YSL11 OS=Oryza sativa subsp. japonica GN=YSL11 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q0J932|YSL10_ORYSJ Probable metal-nicotianamine transporter YSL10 OS=Oryza sativa subsp. japonica GN=YSL10 PE=2 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| 449460551 | 676 | PREDICTED: probable metal-nicotianamine | 0.998 | 0.985 | 0.791 | 0.0 | |
| 224055759 | 669 | oligopeptide transporter OPT family [Pop | 0.994 | 0.991 | 0.797 | 0.0 | |
| 359488466 | 675 | PREDICTED: probable metal-nicotianamine | 0.998 | 0.986 | 0.799 | 0.0 | |
| 356561689 | 674 | PREDICTED: probable metal-nicotianamine | 0.997 | 0.986 | 0.781 | 0.0 | |
| 350285879 | 679 | yellow stripe-like protein 6 [Malus xiao | 0.998 | 0.980 | 0.784 | 0.0 | |
| 18405202 | 676 | putative metal-nicotianamine transporter | 0.995 | 0.982 | 0.780 | 0.0 | |
| 21539461 | 676 | unknown protein [Arabidopsis thaliana] | 0.995 | 0.982 | 0.778 | 0.0 | |
| 21592981 | 676 | unknown [Arabidopsis thaliana] | 0.995 | 0.982 | 0.778 | 0.0 | |
| 298571730 | 678 | yellow stripe-like protein 6.4 [Brassica | 1.0 | 0.983 | 0.771 | 0.0 | |
| 297818256 | 676 | hypothetical protein ARALYDRAFT_904909 [ | 0.995 | 0.982 | 0.777 | 0.0 |
| >gi|449460551|ref|XP_004148009.1| PREDICTED: probable metal-nicotianamine transporter YSL6-like [Cucumis sativus] gi|449501993|ref|XP_004161514.1| PREDICTED: probable metal-nicotianamine transporter YSL6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1108 bits (2867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/676 (79%), Positives = 605/676 (89%), Gaps = 10/676 (1%)
Query: 1 MGTE---VEVSEPLIEK-------ITAEEDQLIPEWKDQITIRGLAVSAIMGTLFCIITH 50
MGTE VE+SEPL+ + + +++ + IP+WKDQITIRGLAVSA++GTLFCIITH
Sbjct: 1 MGTEKTRVEISEPLLVEPENHGGSVESDDLEEIPDWKDQITIRGLAVSALLGTLFCIITH 60
Query: 51 RLNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLGFSTKPFTRQENTVIQTCVVACYGLA 110
+LNLTVGIIPSLN+AAGLLGF VKSWT LSK+GFS PFT+QENTVIQTCVVACYGLA
Sbjct: 61 KLNLTVGIIPSLNVAAGLLGFFFVKSWTGVLSKIGFSVVPFTKQENTVIQTCVVACYGLA 120
Query: 111 ASGGFGSSFLAMDKRTYKLIGTEYPGNRAEDVKNPGLGWMIVFMFVVSFVGLFSLVALRK 170
SGGFGS +AMD+RTYKLIGT+YPGNRAEDV NPGL WMI F+FVVSF+GLFSLV LRK
Sbjct: 121 FSGGFGSYIIAMDERTYKLIGTDYPGNRAEDVINPGLAWMIGFLFVVSFLGLFSLVPLRK 180
Query: 171 VMILDGKLTYPSGTATAVLINGFHTNAGAELAGMQVRCIGKYLSISFLCSSFKWFFSGVG 230
VM+LD KLTYPSGTATA+LIN FHTN GAELAG QV C+GKYL ISF+ S FKWFFSGVG
Sbjct: 181 VMVLDYKLTYPSGTATAMLINSFHTNTGAELAGKQVHCLGKYLGISFIWSCFKWFFSGVG 240
Query: 231 DSCGFDNFPSFGLILFKNTFYFDFSPTYVGCGLICPRIVNCSVLLGAIVSWGFLWPYISQ 290
DSCGFDNFP+ GL L+KNTFYFDFSPTYVGCGLICP IVNCSVLLGAI+SWGFLWP++++
Sbjct: 241 DSCGFDNFPTLGLELYKNTFYFDFSPTYVGCGLICPHIVNCSVLLGAIISWGFLWPFVTR 300
Query: 291 HAGDWYPADLGNSDFKGLYGYKVFIAISLILGDGLYNLIKIISVTFKELCNKRTKVSKLP 350
HAGDWYPADLG++DFKGLYGYKVFIAISLILGDGLYNLIKII +T KE+CNK T + LP
Sbjct: 301 HAGDWYPADLGSNDFKGLYGYKVFIAISLILGDGLYNLIKIIYLTVKEICNKSTTNNNLP 360
Query: 351 IDNEIQDTESSRLLIDQKKRENVFLKDGIPTWFAASGYVGLAAISTATIPTIFPPLKWYL 410
+ E D+E +LL ++++++ VFLKD IPTWFAASGYVGLAAISTAT+P IFPPLKWYL
Sbjct: 361 VIKEATDSEGYKLLAEERRKDKVFLKDRIPTWFAASGYVGLAAISTATMPMIFPPLKWYL 420
Query: 411 VLLLYLIAPALAFCNSYGAGLTDCSLSLTYAKIGLFIIASLVGTNGGVIAGLAACGVMMS 470
VL Y++APALAFCNSYG GLTD +LS TY K+GLF+ ASLVG NGGVIAGLAACGVMMS
Sbjct: 421 VLGAYVVAPALAFCNSYGTGLTDWNLSSTYGKLGLFLFASLVGGNGGVIAGLAACGVMMS 480
Query: 471 IVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVFAPLTFWMYWTAFDIGSPDGPY 530
IVSTAADLMQDFKTGYLTLSSAKSMFVSQL+GTAMGCV APLTFW++W+AFDIG PD PY
Sbjct: 481 IVSTAADLMQDFKTGYLTLSSAKSMFVSQLVGTAMGCVIAPLTFWLFWSAFDIGLPDSPY 540
Query: 531 KAPYAVILREMAILGIEGFSELPKHCLALCCGFFVAALVINLLRDVIPEKISKFIPVPMA 590
KAPYAVI REMAILG+EGFSELPKHCLA+CCGFFVAA ++NLLRDV+P+KI++FIP+PMA
Sbjct: 541 KAPYAVIFREMAILGVEGFSELPKHCLAMCCGFFVAAFLVNLLRDVVPKKIAQFIPIPMA 600
Query: 591 MAIPFFVGAYLAIDMFVGTVILFIWERINRKDSEDYAGAVASGLICGDGIWTMPSAVLSI 650
MA+PF++GAY AIDMFVGTVILFIWERINRKD+EDYAGAVASGLICGDGIWT+PSAVLSI
Sbjct: 601 MAVPFYIGAYFAIDMFVGTVILFIWERINRKDAEDYAGAVASGLICGDGIWTIPSAVLSI 660
Query: 651 FSINPPICMYFGPTVS 666
F INPPICM F PTV+
Sbjct: 661 FRINPPICMSFNPTVA 676
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055759|ref|XP_002298639.1| oligopeptide transporter OPT family [Populus trichocarpa] gi|222845897|gb|EEE83444.1| oligopeptide transporter OPT family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|359488466|ref|XP_002274559.2| PREDICTED: probable metal-nicotianamine transporter YSL6-like isoform 1 [Vitis vinifera] gi|296082320|emb|CBI21325.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356561689|ref|XP_003549112.1| PREDICTED: probable metal-nicotianamine transporter YSL6-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|350285879|gb|AEQ28191.1| yellow stripe-like protein 6 [Malus xiaojinensis] | Back alignment and taxonomy information |
|---|
| >gi|18405202|ref|NP_566806.1| putative metal-nicotianamine transporter YSL6 [Arabidopsis thaliana] gi|160359042|sp|Q6R3K6.2|YSL6_ARATH RecName: Full=Probable metal-nicotianamine transporter YSL6; AltName: Full=Protein YELLOW STRIPE LIKE 6; Short=AtYSL6 gi|9279625|dbj|BAB01083.1| unnamed protein product [Arabidopsis thaliana] gi|332643734|gb|AEE77255.1| putative metal-nicotianamine transporter YSL6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|21539461|gb|AAM53283.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|21592981|gb|AAM64930.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|298571730|gb|ACL83357.2| yellow stripe-like protein 6.4 [Brassica juncea] | Back alignment and taxonomy information |
|---|
| >gi|297818256|ref|XP_002877011.1| hypothetical protein ARALYDRAFT_904909 [Arabidopsis lyrata subsp. lyrata] gi|297322849|gb|EFH53270.1| hypothetical protein ARALYDRAFT_904909 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| TAIR|locus:2091970 | 676 | YSL6 "AT3G27020" [Arabidopsis | 0.994 | 0.980 | 0.728 | 7.4e-272 | |
| TAIR|locus:2163036 | 670 | YSL4 "AT5G41000" [Arabidopsis | 0.995 | 0.991 | 0.692 | 3.8e-259 | |
| TAIR|locus:2018491 | 688 | YSL7 "AT1G65730" [Arabidopsis | 0.976 | 0.946 | 0.527 | 2.5e-184 | |
| TAIR|locus:2090502 | 714 | YSL5 "AT3G17650" [Arabidopsis | 0.970 | 0.906 | 0.515 | 1.5e-179 | |
| TAIR|locus:2134956 | 673 | YSL1 "YELLOW STRIPE like 1" [A | 0.961 | 0.952 | 0.505 | 3.9e-179 | |
| TAIR|locus:2168656 | 675 | YSL3 "YELLOW STRIPE like 3" [A | 0.982 | 0.970 | 0.499 | 1.2e-177 | |
| TAIR|locus:2007715 | 724 | YSL8 "AT1G48370" [Arabidopsis | 0.970 | 0.893 | 0.508 | 3.6e-176 | |
| TAIR|locus:2152896 | 664 | YSL2 "AT5G24380" [Arabidopsis | 0.968 | 0.972 | 0.482 | 3.2e-175 | |
| TAIR|locus:2163508 | 216 | AT5G45450 "AT5G45450" [Arabido | 0.296 | 0.916 | 0.551 | 4.5e-59 | |
| DICTYBASE|DDB_G0291554 | 777 | DDB_G0291554 "Putative oligope | 0.322 | 0.276 | 0.294 | 8e-30 |
| TAIR|locus:2091970 YSL6 "AT3G27020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2614 (925.2 bits), Expect = 7.4e-272, P = 7.4e-272
Identities = 491/674 (72%), Positives = 562/674 (83%)
Query: 1 MGTEV----EVSEPLI----EK-ITAEEDQLIPEWKDQITIRGLAVSAIMGTLFCIITHR 51
MGTE+ E+SE L+ EK +TA E+ +PEWK+QITIRGL VSA++GTLFCIITH+
Sbjct: 1 MGTEIPRSAEISEALLPPESEKTVTATEEH-VPEWKEQITIRGLTVSALLGTLFCIITHK 59
Query: 52 LNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLGFSTKPFTRQENTVIQTCVVACYXXXX 111
LNLTVGIIPSLN+AAGLLGF VKSWT FLSKLGF+ KPFT+QENTVIQTCVVACY
Sbjct: 60 LNLTVGIIPSLNVAAGLLGFFFVKSWTGFLSKLGFTVKPFTKQENTVIQTCVVACYGLAF 119
Query: 112 XXXXXXXXXXMDKRTYKLIGTEYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXALRKV 171
MD++TYKLIG +YPGN AEDV NPGL WMI LRKV
Sbjct: 120 SGGFGSYLIAMDEKTYKLIGADYPGNHAEDVINPGLWWMIGFLFVVSFLGLFSLVPLRKV 179
Query: 172 MILDGKLTYPSGTATAVLINGFHTNAGAELAGMQVRCIGKYLSISFLCSSFKWFFSGVGD 231
M+LD KLTYPSGTATA+LIN FHTN GAELAG QV+C+GKYLS+S + S FKWFFSG+GD
Sbjct: 180 MVLDYKLTYPSGTATAMLINSFHTNTGAELAGNQVKCLGKYLSLSLIWSCFKWFFSGIGD 239
Query: 232 SCGFDNFPSFGLILFKNTFYFDFSPTYVGCGLICPRIVNCSVLLGAIVSWGFLWPYISQH 291
+CGFDNFP+ GL LFKNTFYFDFSPTY+GCGLICP IVNCSVLLGAI+SWG LWP++SQH
Sbjct: 240 ACGFDNFPTLGLTLFKNTFYFDFSPTYIGCGLICPHIVNCSVLLGAIISWGILWPFVSQH 299
Query: 292 AGDWYPADLGNSDFKGLYGYKVFIAISLILGDGLYNLIKIISVTFKELCNKRTKVSKLPI 351
AGDWYPADLG++DFKGLYGYKVFIAI++ILGDGLYNL+KII+VT KELC+ R++ LPI
Sbjct: 300 AGDWYPADLGSNDFKGLYGYKVFIAIAIILGDGLYNLVKIIAVTVKELCSSRSRRLNLPI 359
Query: 352 DNE-IQDTESSRLLIDQKKRENVFLKDGIPTWFAASGYVGLAAISTATIPTIFXXXXXXX 410
+ + D+E+S +L+ +KKR+ VFLKD IP FA +GYVGLAAISTATIP IF
Sbjct: 360 VTDGVDDSEASEILLVKKKRDEVFLKDRIPLEFAIAGYVGLAAISTATIPIIFPPLKWYF 419
Query: 411 XXXXXXXXXXXXFCNSYGAGLTDCSLSLTYAKIGLFIIASLVGTNGGVIAGLAACGVMMS 470
FCNSYG GLTD SL+ TY KIGLFIIAS+VG++GGVIAGLAACGVMMS
Sbjct: 420 VLCSYFIAPALAFCNSYGTGLTDWSLASTYGKIGLFIIASVVGSDGGVIAGLAACGVMMS 479
Query: 471 IVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVFAPLTFWMYWTAFDIGSPDGPY 530
IVSTAADLMQDFKTGYLTLSSAKSMFVSQL+GTAMGCV APLTFW++WTAFDIG P+GPY
Sbjct: 480 IVSTAADLMQDFKTGYLTLSSAKSMFVSQLVGTAMGCVIAPLTFWLFWTAFDIGDPNGPY 539
Query: 531 KAPYAVILREMAILGIEGFSELPKHCLALCCGFFVAALVINLLRDVIPEKISKFIPVPMA 590
KAPYAVI REMAILGIEGF+ELPKHCLALC GFF+AAL++NLLRD+ P KIS+FIP+PMA
Sbjct: 540 KAPYAVIFREMAILGIEGFAELPKHCLALCYGFFIAALIVNLLRDITPPKISQFIPIPMA 599
Query: 591 MAIPFFVGAYLAIDMFVGTVILFIWERINRKDSEDYAGAVASGLICGDGIWTMPSAVLSI 650
MA+PF++GAY AIDMFVGTVILF+WERINRKD+ED+AGAVASGLICGDGIWT+PSA+LSI
Sbjct: 600 MAVPFYIGAYFAIDMFVGTVILFVWERINRKDAEDFAGAVASGLICGDGIWTIPSAILSI 659
Query: 651 FSINPPICMYFGPT 664
INPPICMYFGP+
Sbjct: 660 LRINPPICMYFGPS 673
|
|
| TAIR|locus:2163036 YSL4 "AT5G41000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2018491 YSL7 "AT1G65730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2090502 YSL5 "AT3G17650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2134956 YSL1 "YELLOW STRIPE like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2168656 YSL3 "YELLOW STRIPE like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2007715 YSL8 "AT1G48370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2152896 YSL2 "AT5G24380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2163508 AT5G45450 "AT5G45450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0291554 DDB_G0291554 "Putative oligopeptide transporter YGL114W" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6R3K6 | YSL6_ARATH | No assigned EC number | 0.7800 | 0.9955 | 0.9822 | yes | no |
| Q6R3K8 | YSL4_ARATH | No assigned EC number | 0.7447 | 0.9955 | 0.9910 | no | no |
| Q7XRV2 | YSL6_ORYSJ | No assigned EC number | 0.7387 | 0.9700 | 0.9542 | yes | no |
| Q9AY27 | YS1_MAIZE | No assigned EC number | 0.5022 | 0.9820 | 0.9604 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 667 | |||
| pfam03169 | 619 | pfam03169, OPT, OPT oligopeptide transporter prote | 1e-119 | |
| TIGR00728 | 606 | TIGR00728, OPT_sfam, oligopeptide transporter, OPT | 1e-79 | |
| COG1297 | 624 | COG1297, COG1297, Predicted membrane protein [Func | 6e-22 | |
| TIGR00733 | 591 | TIGR00733, TIGR00733, putative oligopeptide transp | 1e-09 |
| >gnl|CDD|217401 pfam03169, OPT, OPT oligopeptide transporter protein | Back alignment and domain information |
|---|
Score = 368 bits (946), Expect = e-119
Identities = 162/651 (24%), Positives = 260/651 (39%), Gaps = 64/651 (9%)
Query: 29 QITIRGLAVSAIMGTLFCIITHRLNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLGFST 88
++T R + + ++ L + L G + +I A LL + K+ L + FS
Sbjct: 1 ELTFRAVVLGILLAILGAAVNMYFGLKTGSVSISSIPAALLAYPLGKALARILGGIRFSL 60
Query: 89 --KPFTRQENTVIQTCVVACYGLAASGGFGSSFLAMDKRTYKLIGTEYPGNRAEDVKNPG 146
PFT +EN +IQT A A +GGF A+ ++
Sbjct: 61 NPGPFTIKENNLIQTMASAGASTAYAGGFIFVLPALLFY----------------GQSFS 104
Query: 147 LGWMIVFMFVVSFVGLFSLVALRKVMILDGKLTYPSGTATAVLINGFHTNAGAELAGMQV 206
G+ I+ + +G+ LR+ ++ KL +PSG ATA L+ HT G + A ++
Sbjct: 105 FGYAILLLLSTQLLGVGFAGPLRRFLVYPPKLPFPSGLATAELLKALHTPGGWKEAKSRL 164
Query: 207 RCIGKYLSISFLCSSFKWFF-------SGVGDSCGFD-NFPSFGLILFKNTFYFDFSPTY 258
+ SF+ + WF S C + P+FGL+ F FD+S
Sbjct: 165 KFFLIGFVASFV---YYWFPFYIFPALSSFSWVCWIAPSNPTFGLLFGGLGFTFDWSAIL 221
Query: 259 VGCGLICPRIVNCSVLLGAIVSWGFLWPYISQHAGDWYPADL---------GNSDFKGLY 309
+G GLI P V ++L+GA++SWG + P + WY A L GL
Sbjct: 222 LGSGLIVPLWVAVNMLIGAVLSWGIIIPLLYYSGNVWYTAYLPIMSNGLFDNTGTSDGLL 281
Query: 310 GYKVFIAISLILGDGLYNL---IKIISVTFKELCNKRTKVSKLPIDNEIQDTESSRLLID 366
Y +I +L GLY L I + + + + + + D
Sbjct: 282 DYARYIGYGPMLLSGLYALLFFAAITATIVHSILFHGRDIWQALKASR-----GPKKSYD 336
Query: 367 QKKRENVFLKDGIPTWFAASGYVGLAAISTATIPTIFP-PLKWYLVLLLYLIAPALAFCN 425
R + +P W+ +G V + A + +FP L + +LL L+A A +
Sbjct: 337 DPHRRLMRKYKEVPMWWYLAGLVLSLVLGIALVAALFPTQLPVWGLLLALLLAFVFAIPS 396
Query: 426 SYGAGLTDCSLSLTYAKIGLFIIASLVGTNGGVIAGLAACGVMMSIVSTAADLMQDFKTG 485
+Y AGLT S + I ++ G +A L GV + + A D MQD KTG
Sbjct: 397 AYIAGLTGSSPVSGLGILTELIAGYVLP--GRPLANLIFGGVGYNAAAQAGDFMQDLKTG 454
Query: 486 YLTLSSAKSMFVSQLLGTAMGCVFAPLTFWMYWTAFDIGSPDGP---YKAPYAVILREMA 542
+ T + ++ FV+QL+GT +G V P + A+ G AP A +A
Sbjct: 455 HYTGAPPRAQFVAQLIGTLVGSVVNPGVLNLLNQAYGCTGAQGDSWTCPAPQAFFSAAVA 514
Query: 543 ILGIEGF-SELPKHCLALCCGFFVAALVINLLRDVIPEKISKFIPVPMAMA----IPFFV 597
I G LP + L A V++ L K +P +A A I ++
Sbjct: 515 WGVIGGKRFGLPYYALLWGFLVGAVAPVLDWLL-------HKRLPRSLAFAGAGTIGPYL 567
Query: 598 GAYLAIDMFVGTVILFIWERINRKDSEDYAGAVASGLICGDGIWTMPSAVL 648
L + VG + + R + Y +A+GLI G+ + + A L
Sbjct: 568 PPSLTSAILVGGLFNYYVRRRRKAWWRKYNYVLAAGLIAGEALMGVIIAFL 618
|
The OPT family of oligopeptide transporters is distinct from the ABC pfam00005 and PTR pfam00854 transporter families. OPT transporters were first recognised in fungi (Candida albicans and Schizosaccharomyces pombe), but this alignment also includes orthologues from Arabidopsis thaliana. OPT transporters are thought to have 12-14 transmembrane domains and contain the following motif: SPYxEVRxxVxxxDDP. Length = 619 |
| >gnl|CDD|233105 TIGR00728, OPT_sfam, oligopeptide transporter, OPT superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|224216 COG1297, COG1297, Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|129816 TIGR00733, TIGR00733, putative oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| KOG2262 | 761 | consensus Sexual differentiation process protein I | 100.0 | |
| TIGR00727 | 681 | ISP4_OPT small oligopeptide transporter, OPT famil | 100.0 | |
| TIGR00728 | 654 | OPT_sfam oligopeptide transporters, OPT superfamil | 100.0 | |
| PF03169 | 624 | OPT: OPT oligopeptide transporter protein; InterPr | 100.0 | |
| TIGR00733 | 591 | putative oligopeptide transporter, OPT family. Thi | 100.0 | |
| COG1297 | 624 | Predicted membrane protein [Function unknown] | 100.0 | |
| TIGR00733 | 591 | putative oligopeptide transporter, OPT family. Thi | 94.65 | |
| PF03169 | 624 | OPT: OPT oligopeptide transporter protein; InterPr | 86.89 |
| >KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-120 Score=982.58 Aligned_cols=606 Identities=17% Similarity=0.211 Sum_probs=521.8
Q ss_pred ccchhhhhcccCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhccccCccchhHHHHHHHHHHHHHHHHHhhhccC-----
Q 005963 11 LIEKITAEEDQLIPEWKDQITIRGLAVSAIMGTLFCIITHRLNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLG----- 85 (667)
Q Consensus 11 ~~~~~~~~~~~~~~~~~p~lT~Ra~~lG~il~~v~a~~n~~~~lr~g~~~~~si~~~ils~~~~~~~~~~lp~~~----- 85 (667)
-.||||+.++..|||++|++|||+|++|++.+++++++||+|++|++....+++.+|++.+|+||+|+|.||+|+
T Consensus 52 pv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~~~~~~~~ 131 (761)
T KOG2262|consen 52 PVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPTWKFGLGG 131 (761)
T ss_pred cchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCceeeecCc
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -----CCCCCCCcchhhhhhhhhhhcccccccccccceeccchhhhHhhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 005963 86 -----FSTKPFTRQENTVIQTCVVACYGLAASGGFGSSFLAMDKRTYKLIGTEYPGNRAEDVKNPGLGWMIVFMFVVSFV 160 (667)
Q Consensus 86 -----~npgpf~~kE~~liq~~as~~~~~a~a~~~~~~i~a~~~l~y~~lg~~~~~~~p~~~~~~~~~~~i~~~l~~~ll 160 (667)
+||||||.|||+++++++|+++|.+|+. .|....+.||+ ++.++++++++++++|++
T Consensus 132 ~~~fslNPGPFn~KEHvlitIfan~~sg~aYat----~Ii~~~k~fY~--------------~~l~f~~~~ll~lttQ~l 193 (761)
T KOG2262|consen 132 RWSFSLNPGPFNVKEHVLITIFANIGSGTAYAT----HIITAQKAFYK--------------RNLSFGYAFLLVLTTQLL 193 (761)
T ss_pred ceEEEeCCCCCcchheeeeehhhhccCcchhhh----HHHHHHHHHHh--------------ccccHHHHHHHHHHHHHh
Confidence 3999999999999999999998888763 45555555573 357899999999999999
Q ss_pred HHHHHHHhhhheeccCCCcCchhhHHHHHHhhhccCCccccc-chhHHHHHHHHHHHHHHHhh-hhhhcccC---Ccccc
Q 005963 161 GLFSLVALRKVMILDGKLTYPSGTATAVLINGFHTNAGAELA-GMQVRCIGKYLSISFLCSSF-KWFFSGVG---DSCGF 235 (667)
Q Consensus 161 G~~~Ag~lRr~lV~p~~l~wP~~la~a~l~~alh~~~~~~~~-~~~~~~f~~~f~~~fi~~~~-~~i~p~l~---~~c~~ 235 (667)
|||+||++||++|+|++|.||++|++++|+|+||++|+.+++ .+|+|||.++|.+||+|+|+ +|++|.|+ +.||.
T Consensus 194 GyGwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~ 273 (761)
T KOG2262|consen 194 GYGWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWI 273 (761)
T ss_pred cccHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEe
Confidence 999999999999999999999999999999999986654444 68999999999999999998 79999988 57876
Q ss_pred cccc-----c----ccccccCcceEeeccc--ccccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCCCC--
Q 005963 236 DNFP-----S----FGLILFKNTFYFDFSP--TYVGCGLICPRIVNCSVLLGAIVSWGFLWPYISQHAGDWYPADLGN-- 302 (667)
Q Consensus 236 ~~~~-----~----~G~~~~~~~~t~dws~--~~ig~gll~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~p~~~~~-- 302 (667)
.+-. + .|++. .++||||+. +|+|+|+..|+++.+|.++|.++..+|++|++|+. |.|+..++|.
T Consensus 274 ~P~s~~~~qi~sg~~GLGi--~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~-n~~~a~~fPI~S 350 (761)
T KOG2262|consen 274 WPSSITANQIGSGLTGLGI--GPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWT-NTYDAKYFPIFS 350 (761)
T ss_pred ccccHHHHHhccccccccc--ccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhc-cceecceeceec
Confidence 4211 2 34444 678999996 58999999999999999999999999999999997 8886555542
Q ss_pred ------------------CCc-ccchhhH----HHHHHHHHHHHHH--HHHHHHH----HHHHHHHHHHhhhcCCCCCCc
Q 005963 303 ------------------SDF-KGLYGYK----VFIAISLILGDGL--YNLIKII----SVTFKELCNKRTKVSKLPIDN 353 (667)
Q Consensus 303 ------------------~~~-~~~~~y~----~~~~~~~~~~~g~--~~l~~~~----~~~~~~~~~~~~~~~~~~~~~ 353 (667)
+++ .|.++|+ .|+++.+.+++|+ .++...+ ..++||+|++.|+..+
T Consensus 351 s~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~~~----- 425 (761)
T KOG2262|consen 351 SSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKAFN----- 425 (761)
T ss_pred CcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhccc-----
Confidence 111 2445676 4788888888873 4443333 3468999998886542
Q ss_pred cccccchhhhhhhhhhhhcccccCCCchHHHHHHHHHHHHHHHhhcccccC--CchHHHHHHHHHHHHHHHhhhhhheee
Q 005963 354 EIQDTESSRLLIDQKKRENVFLKDGIPTWFAASGYVGLAAISTATIPTIFP--PLKWYLVLLLYLIAPALAFCNSYGAGL 431 (667)
Q Consensus 354 ~~~~~~~~~~~~~d~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~~--~~p~w~~~lai~l~~v~~~~~~~~~g~ 431 (667)
..+|.|++.|+||||||+|||++.+++++++++++.+++.+ |+|||++++|+++++++.+|.|.++|+
T Consensus 426 ----------k~~DiHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~At 495 (761)
T KOG2262|consen 426 ----------KKMDIHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQAT 495 (761)
T ss_pred ----------cCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhh
Confidence 34678876678899999999999999999999999999987 899999999999999999999999999
Q ss_pred cCCCcccchhHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 005963 432 TDCSLSLTYAKIGLFIIASLVGTNGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVFAP 511 (667)
Q Consensus 432 tg~~p~~~l~~i~~li~g~~~g~pg~~~a~l~~~~~~~~~~~qA~~~~~DlK~G~y~~~pPr~~f~~Ql~G~ivg~~v~~ 511 (667)
||++| ++|+++|+|+||+. ||+|+|||+||.+|+.++.||.+++||+|+|||||+|||.||.+|++||+++++|+.
T Consensus 496 TNq~~--GLNiitE~i~Gy~~--PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~ 571 (761)
T KOG2262|consen 496 TNQTP--GLNIITEYIIGYIY--PGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNL 571 (761)
T ss_pred ccCCc--cHHHHHHHHHHhhc--CCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeH
Confidence 99885 79999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhcccccCCC--CCCCCCcHHHHHHHHHhh-hcccCCCCchh--hhhHHHHHHHHHHHHHHH----hhhcccc-
Q 005963 512 LT-FWMYWTAFDIGSP--DGPYKAPYAVILREMAIL-GIEGFSELPKH--CLALCCGFFVAALVINLL----RDVIPEK- 580 (667)
Q Consensus 512 ~v-~~~~~~~~~i~~~--~~~f~~P~a~~~~~~s~~-g~~G~~~l~~~--~~~~~~~~~~~g~~l~ll----~~~~p~~- 580 (667)
++ .|++.++.|+|++ +++||||+.++++++|++ |.+||++++.+ .+..+.++|++|++.|++ .+.+||+
T Consensus 572 gv~~W~m~~I~~iC~~~~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~ 651 (761)
T KOG2262|consen 572 GVAWWLMYSIPNICTTDQNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKK 651 (761)
T ss_pred HhHHHHHhcccccccCCCCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhh
Confidence 99 6788889999984 478999999999999999 99999765432 122223366666666655 4556664
Q ss_pred cccccchhhhhhcccccch----hhHHHHHHHHHHHHHHHHhcccccccccceehhhHHhhHHhHHHHHH-HHHhcCCCC
Q 005963 581 ISKFIPVPMAMAIPFFVGA----YLAIDMFVGTVILFIWERINRKDSEDYAGAVASGLICGDGIWTMPSA-VLSIFSINP 655 (667)
Q Consensus 581 ~~~~~P~~~~~~~~~~~p~----~~~~~~~vG~~~~~~~~r~~~~~~~ky~y~laagL~aG~al~gvii~-~l~~~gv~~ 655 (667)
|.+.++.|+.++....+|| +|++|+.+|.++++++|||++.||+||||++|||||||.++++++++ +++..|++.
T Consensus 652 w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~~~ 731 (761)
T KOG2262|consen 652 WIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGISL 731 (761)
T ss_pred hhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCCcc
Confidence 3454444788887777775 78999999999999999999999999999999999999999999996 488888876
Q ss_pred C
Q 005963 656 P 656 (667)
Q Consensus 656 ~ 656 (667)
+
T Consensus 732 ~ 732 (761)
T KOG2262|consen 732 N 732 (761)
T ss_pred c
Confidence 4
|
|
| >TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
| >TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily | Back alignment and domain information |
|---|
| >PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast | Back alignment and domain information |
|---|
| >TIGR00733 putative oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
| >COG1297 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00733 putative oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
| >PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 667 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 71/502 (14%), Positives = 151/502 (30%), Gaps = 137/502 (27%)
Query: 6 EVSEPLIEKITAEE-DQLIPEWKDQITIRGL----------AVSAIMGTL----FCIITH 50
+V + ++ EE D +I L V + + + +
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 51 RLNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLGFSTKPF-----TRQEN-TVIQTCV- 103
+ T PS+ + + +L + F +R + ++ +
Sbjct: 97 PIK-TEQRQPSMM----------TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 104 -------VACYGLAASGGFGSSFLAMDK-RTYKLIGTEYPG----------NRAEDVKNP 145
V G+ G G +++A+D +YK+ + N E V
Sbjct: 146 ELRPAKNVLIDGV---LGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCNSPETVLEM 201
Query: 146 --GLGWMIVFMFVVSFVGLFSL------VALRKVMILDGKLTYPSGTATAVLI-----NG 192
L + I + ++ + +L K Y +L+ N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YE----NCLLVLLNVQNA 256
Query: 193 FHTNAGAELAGMQVRCIGKYLSIS-------FLCSSFKWFFSGVGDSCGFDNFPSFGLIL 245
NA + C K L + FL ++ S S L+L
Sbjct: 257 KAWNA------FNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 246 -FKNTFYFDFSPTYVGCGLICPRIVNCSVLLGAIVS-----WGFLWPYIS----QHAGDW 295
+ + D PR ++ ++ + W W +++ +
Sbjct: 309 KYLDCRPQDLPR--EVLT-TNPRRLS---IIAESIRDGLATWDN-WKHVNCDKLTTIIES 361
Query: 296 YPADLGNSDFKGLYGY-KVF-----I---AISLILGDGLYNLIKIISVTF--KELCNKRT 344
L ++++ ++ VF I +SLI D + + + ++ L K+
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 345 KVSKLPI-----DNEIQDTESSRL---LIDQ-KKRENVFLKDGIPT-----WFAASGYVG 390
K S + I + +++ L ++D + D IP +++ ++G
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIG 478
Query: 391 --LAAISTATIPTIFPPLKWYL 410
L I T+F +L
Sbjct: 479 HHLKNIEHPERMTLFR--MVFL 498
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00