Citrus Sinensis ID: 005969
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WN01 | 741 | Pentatricopeptide repeat- | yes | no | 0.992 | 0.893 | 0.553 | 0.0 | |
| Q9SS83 | 1028 | Pentatricopeptide repeat- | no | no | 0.928 | 0.602 | 0.312 | 3e-95 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.920 | 0.577 | 0.315 | 8e-92 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.932 | 0.705 | 0.311 | 2e-90 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.920 | 0.707 | 0.295 | 5e-87 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.920 | 0.716 | 0.297 | 8e-87 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.928 | 0.622 | 0.311 | 2e-86 | |
| Q9FWA6 | 903 | Pentatricopeptide repeat- | no | no | 0.953 | 0.704 | 0.294 | 3e-86 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.860 | 0.709 | 0.309 | 3e-85 | |
| Q9SVA5 | 834 | Pentatricopeptide repeat- | no | no | 0.923 | 0.738 | 0.294 | 4e-84 |
| >sp|Q0WN01|PP286_ARATH Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana GN=At3g58590 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/663 (55%), Positives = 476/663 (71%), Gaps = 1/663 (0%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQ 60
MP+RN VSFN+II YS+ G V+ A +F M G+ P Q T GLLSC SL+ G Q
Sbjct: 75 MPERNKVSFNTIIKGYSKYGDVDKAWGVFSEMRYFGYLPNQSTVSGLLSCASLDVRAGTQ 134
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
L LK GLF ADAFVGT LL LYGR L+ VFEDMP KSL TWN ++S+ G G
Sbjct: 135 LHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFEDMPFKSLETWNHMMSLLGHRG 194
Query: 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVAN 180
F+++CMF F ELVR +LTESSF+GV+ G+S +DL+ +Q+H K G D E+ V N
Sbjct: 195 FLKECMFFFRELVRMGASLTESSFLGVLKGVSCVKDLDISKQLHCSATKKGLDCEISVVN 254
Query: 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240
SL++ Y +C AE+MF+D D+VSWN II A A+SEN KAL+L++ M P
Sbjct: 255 SLISAYGKCGNTHMAERMFQDAGSWDIVSWNAIICATAKSENPLKALKLFVSMPEHGFSP 314
Query: 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300
NQ T+V V+ + +Q G+ IH +IKN E + +G+AL+DFYAKC NLE + LCF
Sbjct: 315 NQGTYVSVLGVSSLVQLLSCGRQIHGMLIKNGCETGIVLGNALIDFYAKCGNLEDSRLCF 374
Query: 301 SEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360
I +KNIV WNAL+ GYA+K P + L +++LQ+G+RP E+TFS L+S +L QL
Sbjct: 375 DYIRDKNIVCWNALLSGYANKDGPICLSLFLQMLQMGFRPTEYTFSTALKSCCVTELQQL 434
Query: 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQ 420
H +I+RMGYE+ +YVL SLM SYAK+ L++DAL + + P +VVP NI+AGIY+R GQ
Sbjct: 435 HSVIVRMGYEDNDYVLSSLMRSYAKNQLMNDALLLLDWASGPTSVVPLNIVAGIYSRRGQ 494
Query: 421 YNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480
Y+E+VKL+S LE+PD VSWNI IAAC+ + ++EV+ELFK+M + I PD YTFVS+LS
Sbjct: 495 YHESVKLISTLEQPDTVSWNIAIAACSRSDYHEEVIELFKHMLQSNIRPDKYTFVSILSL 554
Query: 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVIT 540
CSKLC+L LGSS+HGLI KT+ +DTFVCN+LIDMYGKCGSI S +K+F E ++N+IT
Sbjct: 555 CSKLCDLTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLIT 614
Query: 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600
WTALIS LG++G+ Q ALEKF+E LGFKPDRV+ I++LTACRHGG+V+EGM LF++M
Sbjct: 615 WTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKM- 673
Query: 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYD 660
+ YGVEPEMDHY C VDLL R G+LKEAE +I MPFP +A +WRTFL+GC R + +
Sbjct: 674 KDYGVEPEMDHYRCAVDLLARNGYLKEAEHLIREMPFPADAPVWRTFLDGCNRFAEEQRN 733
Query: 661 TLN 663
TLN
Sbjct: 734 TLN 736
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 206/660 (31%), Positives = 342/660 (51%), Gaps = 41/660 (6%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSL--NPVEG 58
M +VV++N +IS + + G A+ F M + T+ T G +LS + N G
Sbjct: 287 MSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLG 346
Query: 59 AQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGK 118
+ A +K GL ++ +VG++L+ +Y + ++ VFE + K+ V WN+++ +
Sbjct: 347 LVVHAEAIKLGL-ASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAH 405
Query: 119 HGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLV 178
+G M LF ++ S + + +F ++ + DLE G Q H ++IK L V
Sbjct: 406 NGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFV 465
Query: 179 ANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIV 238
N+LV+MY +C + A ++F+ + RD V+WNTIIG+ + EN +A +L+ RM++ +
Sbjct: 466 GNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGI 525
Query: 239 FPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHL 298
+ + +C + GK +H +K L+ D+ GS+L+D Y+KC ++ A
Sbjct: 526 VSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARK 585
Query: 299 CFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLL 358
FS + ++VS NALI GY+ + ++ L E+L G P+E TF+ ++ + + L
Sbjct: 586 VFSSLPEWSVVSMNALIAGYSQNNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESL 645
Query: 359 ----QLHCLIIRMGYENY-EYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAG 413
Q H I + G+ + EY+ SL+ Y S +++A A + L+ P++
Sbjct: 646 TLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKS--------- 696
Query: 414 IYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYT 473
IV W +++ + NG Y+E L+ +K MR + PD T
Sbjct: 697 ----------------------IVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQAT 734
Query: 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEM 533
FV++L CS L +L G ++H LI D N LIDMY KCG + S ++F+EM
Sbjct: 735 FVTVLRVCSVLSSLREGRAIHSLIFHL-AHDLDELTSNTLIDMYAKCGDMKGSSQVFDEM 793
Query: 534 TDR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREG 592
R NV++W +LI+ NG+A+ AL+ F M PD + + VLTAC H G V +G
Sbjct: 794 RRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDG 853
Query: 593 MELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQ 652
++FE M YG+E +DH C+VDLL R+G+L+EA+ I P+A +W + L C+
Sbjct: 854 RKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACR 913
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 338 bits (867), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 204/647 (31%), Positives = 335/647 (51%), Gaps = 33/647 (5%)
Query: 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVE-GAQLQASV 65
S+ ++IS S+ +A+R+F M G PT + F +LS C + +E G QL V
Sbjct: 255 SWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLV 314
Query: 66 LKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDC 125
LK G F +D +V AL+ LY G L +F +M ++ VT+N++++ + G+ E
Sbjct: 315 LKLG-FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 373
Query: 126 MFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNM 185
M LF + + ++ ++ S + L G+Q+H K GF + +L+N+
Sbjct: 374 MELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 433
Query: 186 YFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTF 245
Y +CA I +A F + E+ +VV WN ++ A ++ + ++ +M ++ + PNQ T+
Sbjct: 434 YAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTY 493
Query: 246 VYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN 305
++ +C L + LG+ IH+++IK + + +V S L+D YAK L+ A +
Sbjct: 494 PSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG 553
Query: 306 KNIVSWNALILGYASKS-SPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLI 364
K++VSW +I GY + ++ ++L G R +E ++ + + Q L
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQAL------ 607
Query: 365 IRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNET 424
+ G + + SG SD L F AL +Y+R G+ E+
Sbjct: 608 -KEGQQ--------IHAQACVSGFSSD-LPFQNAL------------VTLYSRCGKIEES 645
Query: 425 VKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKL 484
Q E D ++WN +++ +G+ +E L +F M I +N+TF S + A S+
Sbjct: 646 YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASET 705
Query: 485 CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTAL 544
N+ G +H +I KT S+T VCN LI MY KCGSI + K F E++ +N ++W A+
Sbjct: 706 ANMKQGKQVHAVITKTGY-DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAI 764
Query: 545 ISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYG 604
I+A +GF AL+ F +M +P+ V L+ VL+AC H GLV +G+ FE MN YG
Sbjct: 765 INAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYG 824
Query: 605 VEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGC 651
+ P+ +HY CVVD+L R G L A++ I MP P+AL+WRT L C
Sbjct: 825 LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSAC 871
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (855), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 203/652 (31%), Positives = 345/652 (52%), Gaps = 30/652 (4%)
Query: 2 PDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLL-SCDSLNPVEGAQ 60
P +NV +NSII A+S+ G +AL + + P ++TF ++ +C L E
Sbjct: 67 PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
L + + F +D FVG AL+ +Y R G L VF++MP + LV+WNS++S + HG
Sbjct: 127 LVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHG 186
Query: 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVAN 180
+ E+ + ++ EL S + + V+ N ++ G+ +HG +K+G + ++V N
Sbjct: 187 YYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNN 246
Query: 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240
LV MY + A ++F ++++RD VS+NT+I + E +++ ++L ++D P
Sbjct: 247 GLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKP 305
Query: 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300
+ T V+ +C L++ L K I+ ++K + V + L+D YAKC ++ A F
Sbjct: 306 DLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVF 365
Query: 301 SEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360
+ + K+ VSWN++I GY L+E ++L F ++ A + L
Sbjct: 366 NSMECKDTVSWNSIISGYIQSGD------LMEAMKL------FKMMMIMEEQ-ADHITYL 412
Query: 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQ 420
+ + + ++ G L ++ KSG+ D + +N + +Y + G+
Sbjct: 413 MLISVSTRLADLKFGKG-LHSNGIKSGICID-------------LSVSNALIDMYAKCGE 458
Query: 421 YNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480
+++K+ S + D V+WN VI+AC GD+ L++ MR + + PD TF+ L
Sbjct: 459 VGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPM 518
Query: 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVIT 540
C+ L LG +H + + S+ + N LI+MY KCG + +S ++F M+ R+V+T
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGY-ESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVT 577
Query: 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600
WT +I A G+ G ++ALE F +ME G PD V IA++ AC H GLV EG+ FE+M
Sbjct: 578 WTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMK 637
Query: 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQ 652
Y ++P ++HY CVVDLL R + +AE+ I MP P+A IW + L C+
Sbjct: 638 THYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACR 689
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (826), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 195/659 (29%), Positives = 333/659 (50%), Gaps = 45/659 (6%)
Query: 2 PDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-----CDSLNPV 56
P R+ S+ S++ +SR G ++A R+FL + G E F +L CD L
Sbjct: 54 PGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELF-- 111
Query: 57 EGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIF 116
G QL +K G F D VGT+L+ Y + + VF++M +++VTW +++S +
Sbjct: 112 -GRQLHCQCIKFG-FLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGY 169
Query: 117 GKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYEL 176
++ ++ + LF + +F + L+ E G Q+H +V+KNG D +
Sbjct: 170 ARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTI 229
Query: 177 LVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVD 236
V+NSL+N+Y +C + A +F E++ VV+WN++I A + +AL ++ M ++
Sbjct: 230 PVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLN 289
Query: 237 IVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGA 296
V ++++F VI CA L+ + +H V+K D + +AL+ Y+KC + A
Sbjct: 290 YVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDA 349
Query: 297 HLCFSEIS-NKNIVSWNALILGY-ASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLA 354
F EI N+VSW A+I G+ + ++ L E+ + G RPNEFT+S +L +
Sbjct: 350 LRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPV 409
Query: 355 FQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGI 414
++H +++ YE V +L+ +Y K
Sbjct: 410 ISPSEVHAQVVKTNYERSSTVGTALLDAYVK----------------------------- 440
Query: 415 YNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTF 474
G+ E K+ S ++ DIV+W+ ++A A G+ + +++F + I P+ +TF
Sbjct: 441 ---LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTF 497
Query: 475 VSLLSACSKL-CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEM 533
S+L+ C+ ++ G HG K+ + SS V + L+ MY K G+I S+ ++F
Sbjct: 498 SSILNVCAATNASMGQGKQFHGFAIKSRLDSS-LCVSSALLTMYAKKGNIESAEEVFKRQ 556
Query: 534 TDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGM 593
++++++W ++IS +G A +AL+ F+EM+ K D V I V AC H GLV EG
Sbjct: 557 REKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGE 616
Query: 594 ELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQ 652
+ F+ M R + P +H C+VDL R G L++A K+I MP P + IWRT L C+
Sbjct: 617 KYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACR 675
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 195/656 (29%), Positives = 351/656 (53%), Gaps = 42/656 (6%)
Query: 5 NVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLL-SCDSLNPVEGAQ-LQ 62
++ +NSIIS++ R G + AL + M+ G P TF L+ +C +L +G L
Sbjct: 102 SIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLS 161
Query: 63 ASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFV 122
+V G+ C + FV ++L+ Y +G +D +F+ + +K V WN +++ + K G +
Sbjct: 162 DTVSSLGMDC-NEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGAL 220
Query: 123 EDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSL 182
+ + F + +++ +F V+ +++ ++ G Q+HGLV+ +G D+E + NSL
Sbjct: 221 DSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSL 280
Query: 183 VNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQ 242
++MY +C A K+F+ + D V+WN +I +S ++L + M V P+
Sbjct: 281 LSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDA 340
Query: 243 TTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSE 302
TF ++ S + +N K IH ++++++ D+F+ SAL+D Y KC + A FS+
Sbjct: 341 ITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQ 400
Query: 303 ISNKNIVSWNALILGYASKS-SPTSIFLLIELLQLGYRPNEFTFSHVLRSS---LAFQL- 357
++ ++V + A+I GY S+ + L+++ PNE T +L LA +L
Sbjct: 401 CNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLG 460
Query: 358 LQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNR 417
+LH II+ G++N NI AV+ +Y +
Sbjct: 461 RELHGFIIKKGFDN--------------------------RCNIGCAVI------DMYAK 488
Query: 418 TGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSL 477
G+ N ++ +L + DIVSWN +I CA + + +++F+ M + I D + +
Sbjct: 489 CGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAA 548
Query: 478 LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN 537
LSAC+ L + + G ++HG + K + +SD + + LIDMY KCG++ +++ +F M ++N
Sbjct: 549 LSACANLPSESFGKAIHGFMIKHSL-ASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKN 607
Query: 538 VITWTALISALGLNGFAQRALEKFREM-EFLGFKPDRVALIAVLTACRHGGLVREGMELF 596
+++W ++I+A G +G + +L F EM E G +PD++ + ++++C H G V EG+ F
Sbjct: 608 IVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFF 667
Query: 597 ERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQ 652
M YG++P+ +HY CVVDL R G L EA + + +MPFPP+A +W T L C+
Sbjct: 668 RSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACR 723
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (821), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 207/664 (31%), Positives = 336/664 (50%), Gaps = 45/664 (6%)
Query: 4 RNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS--CDSLNPVEG--A 59
+N VS+NSIIS YS+ G A R+F M G PT++TFG L++ C P
Sbjct: 169 KNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLE 228
Query: 60 QLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKH 119
Q+ ++ K+GL D FVG+ L+ + + G L VF M ++ VT N ++ +
Sbjct: 229 QIMCTIQKSGLL-TDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQ 287
Query: 120 GFVEDCMFLFCELVRSEVALTESSFVGVI-----HGLSNEQDLEFGEQIHGLVIKNGF-D 173
+ E+ LF ++ S + ++ S+V ++ + L+ E L+ G ++HG VI G D
Sbjct: 288 KWGEEATKLFMDM-NSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVD 346
Query: 174 YELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRM 233
+ + + N LVNMY +C I A ++F + +D VSWN++I L ++ F +A+E Y M
Sbjct: 347 FMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSM 406
Query: 234 SVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNL 293
+ P T + ++SCA L+ + LG+ IH + +K ++ +V V +AL+ YA+ L
Sbjct: 407 RRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYL 466
Query: 294 EGAHLCFSEISNKNIVSWNALI--LGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRS 351
FS + + VSWN++I L + +S P ++ + + G + N TFS VL +
Sbjct: 467 NECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSA 526
Query: 352 SLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANII 411
+ +L I + +N NI N +
Sbjct: 527 VSSLSFGELGKQIHGLALKN----------------------------NIADEATTENAL 558
Query: 412 AGIYNRTGQYNETVKLLSQL-ERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD 470
Y + G+ + K+ S++ ER D V+WN +I+ HN + L+L +M D
Sbjct: 559 IACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLD 618
Query: 471 NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIF 530
++ + ++LSA + + L G +H + + SD V + L+DMY KCG + +++ F
Sbjct: 619 SFMYATVLSAFASVATLERGMEVHACSVRA-CLESDVVVGSALVDMYSKCGRLDYALRFF 677
Query: 531 NEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLG-FKPDRVALIAVLTACRHGGLV 589
N M RN +W ++IS +G + AL+ F M+ G PD V + VL+AC H GL+
Sbjct: 678 NTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLL 737
Query: 590 REGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLE 649
EG + FE M+ SYG+ P ++H+ C+ D+L R G L + E I MP PN LIWRT L
Sbjct: 738 EEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLG 797
Query: 650 GCQR 653
C R
Sbjct: 798 ACCR 801
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 194/658 (29%), Positives = 341/658 (51%), Gaps = 22/658 (3%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVE-G 58
MP R+VVS+NS++S Y + G ++ +F+ M G E TF +L C L G
Sbjct: 140 MPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLG 199
Query: 59 AQLQASVLKNGLFC-ADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFG 117
Q+ V++ G C D +ALL +Y + E + VF+ +P K+ V+W++I++
Sbjct: 200 MQIHGIVVRVG--CDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCV 257
Query: 118 KHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELL 177
++ + + F E+ + +++S + V+ + +L G Q+H +K+ F + +
Sbjct: 258 QNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGI 317
Query: 178 VANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDI 237
V + ++MY +C + A+ +F + E + S+N +I ++ E+ KAL L+ R+
Sbjct: 318 VRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSG 377
Query: 238 VFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAH 297
+ ++ + V +CA ++ G I+ IK++L DV V +A +D Y KC L A
Sbjct: 378 LGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAF 437
Query: 298 LCFSEISNKNIVSWNALILGYASKSSP-TSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQ 356
F E+ ++ VSWNA+I + ++FL + +L+ P+EFTF +L++
Sbjct: 438 RVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGS 497
Query: 357 L---LQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAG 413
L +++H I++ G + V SL+ Y+K G+I +A + R AN+
Sbjct: 498 LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHS-----RFFQRANV--- 549
Query: 414 IYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYT 473
+G E K+ ++ + VSWN +I+ ++ LF M I PD +T
Sbjct: 550 ----SGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFT 605
Query: 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEM 533
+ ++L C+ L + LG +H + K E+ SD ++C+ L+DMY KCG + S +F +
Sbjct: 606 YATVLDTCANLASAGLGKQIHAQVIKKEL-QSDVYICSTLVDMYSKCGDLHDSRLMFEKS 664
Query: 534 TDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGM 593
R+ +TW A+I +G + A++ F M KP+ V I++L AC H GL+ +G+
Sbjct: 665 LRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGL 724
Query: 594 ELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGC 651
E F M R YG++P++ HY +VD+L + G +K A ++I MPF + +IWRT L C
Sbjct: 725 EYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVC 782
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (811), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 188/607 (30%), Positives = 309/607 (50%), Gaps = 33/607 (5%)
Query: 47 LLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSL 106
L C SL E Q+ V KNGL+ + F T L+ L+ R+G +DE VFE + K
Sbjct: 44 LERCSSLK--ELRQILPLVFKNGLY-QEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLN 100
Query: 107 VTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGL 166
V +++++ F K ++ + F + +V +F ++ +E +L G++IHGL
Sbjct: 101 VLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGL 160
Query: 167 VIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKA 226
++K+GF +L L NMY +C + A K+F + RD+VSWNTI+ +++ A
Sbjct: 161 LVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 220
Query: 227 LELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDF 286
LE+ M + + P+ T V V+ + + L+ +GK IH +++ + V + +ALVD
Sbjct: 221 LEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDM 280
Query: 287 YAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIE-LLQLGYRPNEFTF 345
YAKC +LE A F + +N+VSWN++I Y +P L+ + +L G +P + +
Sbjct: 281 YAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSV 340
Query: 346 SHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAV 405
L + L+ I ++ E L + R V
Sbjct: 341 MGALHACADLGDLERGRFIHKLSVE----------------------------LGLDRNV 372
Query: 406 VPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAA 465
N + +Y + + + + +L+ +VSWN +I A NG + L F MR+
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 432
Query: 466 RIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGS 525
+ PD +T+VS+++A ++L +HG++ ++ + + FV L+DMY KCG+I
Sbjct: 433 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRS-CLDKNVFVTTALVDMYAKCGAIMI 491
Query: 526 SVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585
+ IF+ M++R+V TW A+I G +GF + ALE F EM+ KP+ V ++V++AC H
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSH 551
Query: 586 GGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWR 645
GLV G++ F M +Y +E MDHY +VDLL R G L EA I MP P ++
Sbjct: 552 SGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYG 611
Query: 646 TFLEGCQ 652
L CQ
Sbjct: 612 AMLGACQ 618
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (801), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 197/668 (29%), Positives = 345/668 (51%), Gaps = 52/668 (7%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFL-YMINRGFEPTQFTFGGLL-SCDSLNPVEG 58
MP+RN+VS+++++SA + G E++L +FL + R P ++ + +C L+ G
Sbjct: 105 MPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDG-RG 163
Query: 59 A----QLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVS 114
QLQ+ ++K+G F D +VGT L+ Y + G +D VF+ +P KS VTW +++S
Sbjct: 164 RWMVFQLQSFLVKSG-FDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMIS 222
Query: 115 IFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDY 174
K G + LF +L+ V V+ S LE G+QIH +++ G +
Sbjct: 223 GCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEM 282
Query: 175 ELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMS 234
+ + N L++ Y +C + +A K+F + ++++SW T++ ++ +A+EL+ MS
Sbjct: 283 DASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMS 342
Query: 235 VDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLE 294
+ P+ ++ SCA L G +HA IK L D +V ++L+D YAKCD L
Sbjct: 343 KFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLT 402
Query: 295 GAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQ----LGYRPNEFTFSHVLR 350
A F + ++V +NA+I GY+ + + + + + RP+ TF +LR
Sbjct: 403 DARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLR 462
Query: 351 SSLAFQLL----QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVV 406
+S + L Q+H L+ + G + +A S LI
Sbjct: 463 ASASLTSLGLSKQIHGLMFKYGLN---------LDIFAGSALID---------------- 497
Query: 407 PANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAAR 466
+Y+ ++ + +++ D+V WN + A + +E L LF ++ +R
Sbjct: 498 -------VYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSR 550
Query: 467 IYPDNYTFVSLLSACSKLCNLALGSSLH-GLIKKTEIISSDTFVCNMLIDMYGKCGSIGS 525
PD +TF ++++A L ++ LG H L+K+ + + ++ N L+DMY KCGS
Sbjct: 551 ERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRG--LECNPYITNALLDMYAKCGSPED 608
Query: 526 SVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585
+ K F+ R+V+ W ++IS+ +G ++AL+ +M G +P+ + + VL+AC H
Sbjct: 609 AHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSH 668
Query: 586 GGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWR 645
GLV +G++ FE M R +G+EPE +HY C+V LL R G L +A ++I MP P A++WR
Sbjct: 669 AGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWR 727
Query: 646 TFLEGCQR 653
+ L GC +
Sbjct: 728 SLLSGCAK 735
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| 359485428 | 921 | PREDICTED: pentatricopeptide repeat-cont | 0.985 | 0.713 | 0.653 | 0.0 | |
| 224146493 | 737 | predicted protein [Populus trichocarpa] | 0.980 | 0.887 | 0.642 | 0.0 | |
| 255568319 | 792 | pentatricopeptide repeat-containing prot | 0.989 | 0.833 | 0.607 | 0.0 | |
| 356515100 | 732 | PREDICTED: pentatricopeptide repeat-cont | 0.986 | 0.898 | 0.588 | 0.0 | |
| 147853495 | 954 | hypothetical protein VITISV_021279 [Viti | 0.898 | 0.627 | 0.636 | 0.0 | |
| 297817172 | 741 | pentatricopeptide repeat-containing prot | 0.992 | 0.893 | 0.547 | 0.0 | |
| 6735376 | 810 | putative protein [Arabidopsis thaliana] | 0.992 | 0.817 | 0.553 | 0.0 | |
| 30694836 | 741 | pentatricopeptide repeat-containing prot | 0.992 | 0.893 | 0.553 | 0.0 | |
| 110739166 | 741 | hypothetical protein [Arabidopsis thalia | 0.992 | 0.893 | 0.552 | 0.0 | |
| 357130989 | 680 | PREDICTED: pentatricopeptide repeat-cont | 0.968 | 0.95 | 0.452 | 1e-160 |
| >gi|359485428|ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/658 (65%), Positives = 527/658 (80%), Gaps = 1/658 (0%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQ 60
M RNVVS+N+II YSR G VE+A +F M GFEPTQ TF GLLSC SL +G Q
Sbjct: 114 MTQRNVVSYNTIIGGYSRNGSVEEAWNLFSEMRRYGFEPTQHTFAGLLSCASLKLSQGFQ 173
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
LQA ++K+GLF AD + GTALL L+GR+GC+DEVV FE+MP+K+LVTWN+++S+FG +G
Sbjct: 174 LQAQMVKSGLFHADPYAGTALLSLFGRNGCIDEVVCAFEEMPQKNLVTWNTVISLFGNYG 233
Query: 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVAN 180
F E+ MFLF EL+R+ L+E SF+GV+ G ++EQDLE GEQ+H L+IKNGFD E+ V N
Sbjct: 234 FSEESMFLFRELMRTGAGLSECSFMGVLSGFASEQDLELGEQVHDLLIKNGFDCEVSVLN 293
Query: 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240
SL+NMY +C+ I AEKMF+ +RDVVSWNT+IGALA+SE K LEL+L+MS+D V P
Sbjct: 294 SLINMYVKCSCICLAEKMFELGCVRDVVSWNTMIGALAKSERPSKVLELFLKMSLDGVLP 353
Query: 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300
N+TTFV VINSC LQ + G+ IHAKVI+N +E +VFVGSALVDFYAKCDNLE AH CF
Sbjct: 354 NETTFVSVINSCTNLQILVFGEYIHAKVIRNKIESNVFVGSALVDFYAKCDNLESAHCCF 413
Query: 301 SEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360
EI KN+V WNALILGY++K +S+ LL +LQLGY PNEF+FS L+SSL F+L QL
Sbjct: 414 DEIDEKNVVCWNALILGYSNKCF-SSVSLLKRMLQLGYCPNEFSFSAALKSSLVFELQQL 472
Query: 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQ 420
HCLI+RMGY+ EYV +L+TSYAK+G+ISDAL F A N P V P+N IAG+YN+ GQ
Sbjct: 473 HCLIMRMGYQQNEYVSSALITSYAKNGIISDALIFDAASNKPLLVGPSNAIAGVYNKIGQ 532
Query: 421 YNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480
Y+ T L S LE PDIVSWNI+IAACA NGDYKEV ELFK+M+ A+IYPDNYT VSLLS
Sbjct: 533 YHRTQDLFSLLEEPDIVSWNILIAACARNGDYKEVFELFKHMQMAQIYPDNYTVVSLLSV 592
Query: 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVIT 540
C+KLCNLALGSS+HG I KT+ DTFV N+LIDMYGKCG I SS+KIFN++ +RN+IT
Sbjct: 593 CTKLCNLALGSSIHGFIIKTDFKFCDTFVFNVLIDMYGKCGCIESSLKIFNKIIERNIIT 652
Query: 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600
WTALISALG+NG+A AL+ FREME LGFKPD VAL+AV +ACRHGGLV+EGMELF +M
Sbjct: 653 WTALISALGVNGYANEALKLFREMESLGFKPDGVALVAVFSACRHGGLVKEGMELFWQMK 712
Query: 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAK 658
+S G+EP +DHYHCVVDLL R GHL+EAE++I+ MPFPPNALIWR+FLEGC+R + A+
Sbjct: 713 KSCGIEPNIDHYHCVVDLLARCGHLQEAEQVISNMPFPPNALIWRSFLEGCKRWKTAE 770
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146493|ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|222862901|gb|EEF00408.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/655 (64%), Positives = 521/655 (79%), Gaps = 1/655 (0%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQ 60
MP RN VS+NSIIS +S+ GY+E+A R F MI+ GF P FT GLLSC S++ G
Sbjct: 74 MPHRNKVSYNSIISCFSKYGYLEEAWRTFCEMIDCGFRPNNFTLSGLLSCASMDVGRGIM 133
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
LQA +KNGLFC+D FVGTALLGL+GR G LDE VFEDMP KSLVTWNS++S+ G HG
Sbjct: 134 LQALAIKNGLFCSDVFVGTALLGLFGRCGWLDEAFHVFEDMPDKSLVTWNSMISLLGHHG 193
Query: 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVAN 180
FVEDC+ LF +LVR E +L++ SF GV+ GL E+DLEFG QIHGLVIK+G D E+LV+N
Sbjct: 194 FVEDCVVLFRKLVRKEGSLSKCSFEGVLSGLVCEEDLEFGGQIHGLVIKSGLDCEVLVSN 253
Query: 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240
SL+NMY + + + EK+F++V+ RDVV+WNTII A ++S+N GKALE++L+MS D + P
Sbjct: 254 SLINMYARRSSMSQVEKLFEEVDGRDVVTWNTIISAFSKSKNPGKALEVFLKMSEDGIMP 313
Query: 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300
NQTTFV VINSC L + G+ +H K++K ALE DV++GSALVD+YAKC L+ AH CF
Sbjct: 314 NQTTFVSVINSCTSLLVPMCGEYVHGKIVKTALETDVYLGSALVDYYAKCGKLDNAHYCF 373
Query: 301 SEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360
EI KN+VSWN+LILGYA+K S S+ LL+E+L+LG+RPNEF+FS VL+SSL +L Q+
Sbjct: 374 REIHQKNVVSWNSLILGYANKCSFASVSLLLEMLKLGFRPNEFSFSAVLKSSLVLELKQI 433
Query: 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQ 420
H L IR+GYEN EYVL SL+TSY ++GLI+DAL FV A AVVPAN IAGIYNR+GQ
Sbjct: 434 HSLTIRLGYENNEYVLTSLITSYGRNGLITDALIFVKASETLLAVVPANSIAGIYNRSGQ 493
Query: 421 YNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480
Y ET+K LSQLE PD VSWNIVIAACA NG+Y EV ELFK+MR A++ PDNYT+ SLL
Sbjct: 494 YFETLKFLSQLEEPDTVSWNIVIAACARNGNYNEVFELFKHMRVAQMLPDNYTYTSLLCV 553
Query: 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVIT 540
SK+CNLALGSS+HGL+ KT D V N+LIDMYGKCG++ SS KIF+ MT+RN+IT
Sbjct: 554 SSKVCNLALGSSIHGLLIKTNFSYFDIVVRNVLIDMYGKCGNLESSAKIFDSMTERNLIT 613
Query: 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600
WTALISALG+NG AQ ALE+F +MEFLG +PD+VA IAVLTACRHG LVREGM+LF +MN
Sbjct: 614 WTALISALGINGCAQEALERFNDMEFLGSRPDKVAFIAVLTACRHGALVREGMQLFGKMN 673
Query: 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCR 655
+Y +EP+MDHYHC+VDLL R GHL+EAEK+I+ MPFPP+A IWR+FLEGC++ R
Sbjct: 674 -NYHIEPDMDHYHCLVDLLARNGHLEEAEKVISCMPFPPDAQIWRSFLEGCKKRR 727
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568319|ref|XP_002525134.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535593|gb|EEF37261.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/663 (60%), Positives = 511/663 (77%), Gaps = 3/663 (0%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQ 60
MP R++ S+NSII++Y + GY+E+AL +F M + GF P FT GLLSC ++ G Q
Sbjct: 74 MPQRSIASYNSIITSYCKYGYLEEALGVFSRMRDCGFRPNNFTLSGLLSCSKMDLSIGLQ 133
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
LQA +KNGLF DAFVGTALL ++GR G L+E + VFED+P KSLVTWNSI+ +FG+HG
Sbjct: 134 LQALAMKNGLFYIDAFVGTALLNVFGRWGWLNEALHVFEDLPIKSLVTWNSIICLFGQHG 193
Query: 121 FVEDCMFLFCELVRS-EVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVA 179
+VEDC+ FCEL R L+E SFVGV+ GL + LEFGEQIH LV K GFDY + V
Sbjct: 194 YVEDCIIYFCELHREIGCCLSECSFVGVLSGLVCGKYLEFGEQIHSLVTKTGFDYTVSVV 253
Query: 180 NSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVF 239
NS++++Y +CA + AEK F++ +D+V+WNT+I ALA+SE KALEL+ +M D +
Sbjct: 254 NSVISVYVKCATLHLAEKKFEEAACKDIVTWNTMIVALAKSEKPIKALELFFKMPRDAIR 313
Query: 240 PNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLC 299
PNQ TF +I+SCA LQ + + IHAKVI +A + DV+VGSALVD+YAKCD L+ A C
Sbjct: 314 PNQITFASLISSCANLQIPMYAEFIHAKVIMHAFDTDVYVGSALVDYYAKCDKLDDARCC 373
Query: 300 FSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQ 359
F +I KN+VSWN+LILG A+K +I LL+E+LQ GY+PNEF+FS VL SS +L Q
Sbjct: 374 FVKIHEKNVVSWNSLILGCANKCPYAAISLLVEMLQCGYQPNEFSFSAVLISSSILELQQ 433
Query: 360 LHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTG 419
LHCLIIRMGY+N +YVL SL+TSY ++GLISDAL F+ A P A VP+N +AGIYN+ G
Sbjct: 434 LHCLIIRMGYDNNDYVLSSLITSYGRNGLISDALVFLAASETPLAAVPSNNVAGIYNKAG 493
Query: 420 QYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLS 479
Y +T++LLSQLE PD VSWNI IAACA NG+YKEV ELFK M A+I+PDNYT+VSLLS
Sbjct: 494 HYYKTLELLSQLEEPDNVSWNIAIAACARNGNYKEVFELFKQMLVAQIHPDNYTYVSLLS 553
Query: 480 ACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVI 539
+ S++C+LALGSS+HG + K S DTFVCN+L+DMYGKCG + SSVKIFN M DRN+I
Sbjct: 554 SSSQICDLALGSSIHGFLIKNNFSSCDTFVCNVLLDMYGKCGCLRSSVKIFNSMRDRNLI 613
Query: 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599
TWTALISALG+N A ALE+F++ME G +PD+VA IAVLTACRHG LV EG+ELF++M
Sbjct: 614 TWTALISALGINSCAHEALERFKDMEHQGLRPDKVAFIAVLTACRHGALVGEGIELFKKM 673
Query: 600 NRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKY 659
+SYG+EPEMDHYHC+VDL R+GH+KEAEK+I++MP PPNALIWRTFLEGC++ R +K
Sbjct: 674 -KSYGLEPEMDHYHCLVDLFSRHGHVKEAEKVISSMPCPPNALIWRTFLEGCKKYR-SKE 731
Query: 660 DTL 662
D L
Sbjct: 732 DQL 734
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515100|ref|XP_003526239.1| PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/659 (58%), Positives = 502/659 (76%), Gaps = 1/659 (0%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQ 60
+P R VVS+N++I+AY R G V+DA + +M GF PTQ+T GLLSC+ LN G Q
Sbjct: 74 LPHRTVVSYNTLITAYCRRGNVDDAWNLLCHMRGSGFAPTQYTLTGLLSCELLNHSRGVQ 133
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
LQA ++NGL ADAFVGTALLGL+GR GC DE+ FEDMP+KSLVTWNS+VS+ ++G
Sbjct: 134 LQALSIRNGLLDADAFVGTALLGLFGRLGCWDELFLAFEDMPQKSLVTWNSMVSLLARNG 193
Query: 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGL-SNEQDLEFGEQIHGLVIKNGFDYELLVA 179
FVE+C LF +LV + ++L+E S V V+ GL +E+DLE+GEQIHGL++K GF E+ A
Sbjct: 194 FVEECKILFRDLVGTGISLSEGSVVAVLSGLVDSEEDLEYGEQIHGLMVKCGFGCEITAA 253
Query: 180 NSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVF 239
NSL+++Y +C +++ E++F+ V + +VVSWNT+I AL +SE AL+L+L M+ +
Sbjct: 254 NSLISVYVRCKAMFAVERLFEQVPVENVVSWNTVIDALVKSERPMMALDLFLNMARRGLM 313
Query: 240 PNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLC 299
P+Q TFV VI+SC L+NS+ G+S+HAK+I++ E DV VG+ALVDFY+KCD AH C
Sbjct: 314 PSQATFVAVIHSCTSLRNSVCGESVHAKIIRSGFESDVIVGTALVDFYSKCDKFISAHKC 373
Query: 300 FSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQ 359
F +I KN+VSWNALI GY++ S TSI LL ++LQLGY PNEF+FS VL+SS L Q
Sbjct: 374 FDQIEEKNVVSWNALITGYSNICSSTSILLLQKMLQLGYSPNEFSFSAVLKSSSMSNLHQ 433
Query: 360 LHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTG 419
LH LIIR GYE+ EYVL SL+ +Y ++GLI++AL+FV N P VVP+NIIAGIYNRT
Sbjct: 434 LHGLIIRSGYESNEYVLSSLVMAYTRNGLINEALSFVEEFNNPLPVVPSNIIAGIYNRTS 493
Query: 420 QYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLS 479
Y+ET+KLLS LE+PD VSWNIVI+ACA + Y EV LFK+M +A I+PD+YTF+S++S
Sbjct: 494 LYHETIKLLSLLEKPDAVSWNIVISACARSNSYDEVFALFKHMHSACIHPDSYTFMSIIS 553
Query: 480 ACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVI 539
C+KLC L LGSSLHGLI KT + + DTF+ N+LIDMYGKCGSI SSVK+F E+ +N+I
Sbjct: 554 VCTKLCLLNLGSSLHGLIIKTNLSNYDTFLGNVLIDMYGKCGSIDSSVKVFEEIMYKNII 613
Query: 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599
TWTALI+ALGLNGFA A+ +F+ +E +G KPD +AL AVL++CR+GGLV EGME+F +M
Sbjct: 614 TWTALITALGLNGFAHEAVMRFQNLELMGLKPDALALRAVLSSCRYGGLVNEGMEIFRQM 673
Query: 600 NRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAK 658
YGV PE DHYHCVVDLL + G +KEAEKII MPFPPNA IWR+FLEG R IA
Sbjct: 674 GTRYGVPPEHDHYHCVVDLLAKNGQIKEAEKIIACMPFPPNANIWRSFLEGYSRQEIAN 732
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853495|emb|CAN82291.1| hypothetical protein VITISV_021279 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/600 (63%), Positives = 466/600 (77%), Gaps = 1/600 (0%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQ 60
M RNVVS+N+II YSR G VE+A +F + GFEPTQ TF GLLSC SL +G Q
Sbjct: 114 MTQRNVVSYNTIIGGYSRNGSVEEAWNLFSELRRYGFEPTQHTFAGLLSCASLKLSQGFQ 173
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
LQA ++K+GLF AD + GTALL L+ R+GC+DEVV FE+MP K+LVTWN+++S+FG +G
Sbjct: 174 LQAQMVKSGLFHADPYAGTALLSLFRRNGCIDEVVCAFEEMPLKNLVTWNTVISLFGNYG 233
Query: 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVAN 180
F E+ MFLF EL+R+ L+E SF+GV+ G ++EQDLE GEQ+H L+IKNGFD E+ V N
Sbjct: 234 FSEESMFLFRELMRTGAGLSECSFMGVLSGFASEQDLELGEQVHDLLIKNGFDXEVSVLN 293
Query: 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240
SL+NMY +C+ I AEKMF+ +RDVVSWNT+IGALA+SE K LEL+L+MS+D V P
Sbjct: 294 SLINMYVKCSCIXLAEKMFELGCVRDVVSWNTMIGALAKSERPSKVLELFLKMSLDGVLP 353
Query: 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300
N+TTFV VINSC LQ + G+ IHAKVI+N +E +VFVGSALVDFYAKCDNLE AH CF
Sbjct: 354 NETTFVSVINSCTNLQILVFGEYIHAKVIRNKIESNVFVGSALVDFYAKCDNLESAHCCF 413
Query: 301 SEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360
EI KN+V WNALILGY++K +S+ LL +LQLGY PNE +FS L+SSL F+L QL
Sbjct: 414 DEIDEKNVVCWNALILGYSNKCF-SSVSLLKRMLQLGYXPNEXSFSAALKSSLVFELQQL 472
Query: 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQ 420
HCLI+RMGY+ EYV +L+TSYAK+G+ISDAL F A N P V P+N IAG+YN+ GQ
Sbjct: 473 HCLIMRMGYQQNEYVSSALITSYAKNGIISDALIFDAASNKPLLVGPSNAIAGVYNKIGQ 532
Query: 421 YNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480
Y+ T L S LE PDIVSWNI+IAACA NGDYKEV ELFK+M+ A+IYPDNYT VSLLS
Sbjct: 533 YHXTQDLFSLLEEPDIVSWNILIAACARNGDYKEVFELFKHMQMAQIYPDNYTVVSLLSV 592
Query: 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVIT 540
C+KLCNLALGSS+HG I KT+ DTFV N+LIDMYGKCG I SS+KIFN++ RN+IT
Sbjct: 593 CTKLCNLALGSSIHGFIIKTDFKFCDTFVFNVLIDMYGKCGCIESSLKIFNKIIXRNIIT 652
Query: 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600
WTALISALG+NG+A AL+ FREME LGFKPD VAL+AV +ACRHGGL+ L E N
Sbjct: 653 WTALISALGVNGYANEALKLFREMESLGFKPDGVALVAVFSACRHGGLIFLAGRLPEHTN 712
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817172|ref|XP_002876469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322307|gb|EFH52728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/663 (54%), Positives = 476/663 (71%), Gaps = 1/663 (0%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQ 60
MP+RN VSFN+II+ YS+ G E A + M G+ P Q T GLLSC SL+ G Q
Sbjct: 75 MPERNKVSFNTIINGYSKYGDAEKAWGVLSEMRYFGYLPNQSTVSGLLSCASLDIRAGTQ 134
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
L LK GLF ADA+VGT LL YGR L+ VFEDMP KSL TWN ++S+ G HG
Sbjct: 135 LHGLSLKYGLFMADAYVGTCLLCFYGRLELLEMAEQVFEDMPFKSLETWNHMMSLLGHHG 194
Query: 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVAN 180
F+++CMFLF ELV LTESS +GV+ G+S E DLE +Q+H K G D E+ V N
Sbjct: 195 FLKECMFLFRELVGMGACLTESSLLGVLKGVSCENDLEISKQLHCSATKQGLDCEISVVN 254
Query: 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240
SL++ Y +C AE+MF++ D+VSWN IIGA A+SEN K L+L++ M P
Sbjct: 255 SLISAYGKCGNTHMAERMFQEAGSWDIVSWNAIIGATAKSENPLKTLKLFVSMPEHGFSP 314
Query: 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300
NQ T++ V+ + + Q G+ IH +IKN + D+F+G+AL+DFYAKC +LE +HLCF
Sbjct: 315 NQGTYISVLGASSLRQLLSFGRQIHGMLIKNGCKTDIFLGNALIDFYAKCGSLEDSHLCF 374
Query: 301 SEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360
I +KNIV WNAL+ GY++K P + L +++LQ+G+RP E+TFS L+S +L QL
Sbjct: 375 DYIRDKNIVCWNALLSGYSNKDGPICLSLFLQMLQMGFRPTEYTFSTTLKSCCVTELQQL 434
Query: 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQ 420
H +I+RMGYE+ +YVL SLM SYAK+ L+SDAL + + P +VVP NI+AGIY+R GQ
Sbjct: 435 HSVIVRMGYEDNDYVLSSLMRSYAKNQLMSDALFLLDWASGPTSVVPLNIVAGIYSRRGQ 494
Query: 421 YNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480
Y+E+VKL+S LE+PD VSWNI IAAC+ + ++ EV++LFK+M + I PDNYTFVS+LS
Sbjct: 495 YHESVKLISTLEQPDTVSWNIAIAACSRSDNHGEVIDLFKHMLQSNIRPDNYTFVSILSL 554
Query: 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVIT 540
CSKLC+L LGSS+HGLI KT+ DTFVCN+LIDMYGKCGSI S +K+F E ++N+IT
Sbjct: 555 CSKLCDLTLGSSIHGLITKTDFSCVDTFVCNVLIDMYGKCGSIRSVIKVFEETREKNLIT 614
Query: 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600
WTALIS+LG+ G+ ALEKF+E LGFKPDRV+ I++LTACRHGG+V+EGM+LF++M
Sbjct: 615 WTALISSLGIYGYGHEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMDLFQKM- 673
Query: 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYD 660
+ YG+EPEMDHY C VDLL R G+LKEAE +I MPFP +A +WRTFL+GC R + +
Sbjct: 674 KDYGIEPEMDHYRCAVDLLARNGYLKEAEHLIHRMPFPADAPVWRTFLDGCNRFAEEQRN 733
Query: 661 TLN 663
TLN
Sbjct: 734 TLN 736
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6735376|emb|CAB68197.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/663 (55%), Positives = 476/663 (71%), Gaps = 1/663 (0%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQ 60
MP+RN VSFN+II YS+ G V+ A +F M G+ P Q T GLLSC SL+ G Q
Sbjct: 144 MPERNKVSFNTIIKGYSKYGDVDKAWGVFSEMRYFGYLPNQSTVSGLLSCASLDVRAGTQ 203
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
L LK GLF ADAFVGT LL LYGR L+ VFEDMP KSL TWN ++S+ G G
Sbjct: 204 LHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFEDMPFKSLETWNHMMSLLGHRG 263
Query: 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVAN 180
F+++CMF F ELVR +LTESSF+GV+ G+S +DL+ +Q+H K G D E+ V N
Sbjct: 264 FLKECMFFFRELVRMGASLTESSFLGVLKGVSCVKDLDISKQLHCSATKKGLDCEISVVN 323
Query: 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240
SL++ Y +C AE+MF+D D+VSWN II A A+SEN KAL+L++ M P
Sbjct: 324 SLISAYGKCGNTHMAERMFQDAGSWDIVSWNAIICATAKSENPLKALKLFVSMPEHGFSP 383
Query: 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300
NQ T+V V+ + +Q G+ IH +IKN E + +G+AL+DFYAKC NLE + LCF
Sbjct: 384 NQGTYVSVLGVSSLVQLLSCGRQIHGMLIKNGCETGIVLGNALIDFYAKCGNLEDSRLCF 443
Query: 301 SEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360
I +KNIV WNAL+ GYA+K P + L +++LQ+G+RP E+TFS L+S +L QL
Sbjct: 444 DYIRDKNIVCWNALLSGYANKDGPICLSLFLQMLQMGFRPTEYTFSTALKSCCVTELQQL 503
Query: 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQ 420
H +I+RMGYE+ +YVL SLM SYAK+ L++DAL + + P +VVP NI+AGIY+R GQ
Sbjct: 504 HSVIVRMGYEDNDYVLSSLMRSYAKNQLMNDALLLLDWASGPTSVVPLNIVAGIYSRRGQ 563
Query: 421 YNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480
Y+E+VKL+S LE+PD VSWNI IAAC+ + ++EV+ELFK+M + I PD YTFVS+LS
Sbjct: 564 YHESVKLISTLEQPDTVSWNIAIAACSRSDYHEEVIELFKHMLQSNIRPDKYTFVSILSL 623
Query: 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVIT 540
CSKLC+L LGSS+HGLI KT+ +DTFVCN+LIDMYGKCGSI S +K+F E ++N+IT
Sbjct: 624 CSKLCDLTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLIT 683
Query: 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600
WTALIS LG++G+ Q ALEKF+E LGFKPDRV+ I++LTACRHGG+V+EGM LF++M
Sbjct: 684 WTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKM- 742
Query: 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYD 660
+ YGVEPEMDHY C VDLL R G+LKEAE +I MPFP +A +WRTFL+GC R + +
Sbjct: 743 KDYGVEPEMDHYRCAVDLLARNGYLKEAEHLIREMPFPADAPVWRTFLDGCNRFAEEQRN 802
Query: 661 TLN 663
TLN
Sbjct: 803 TLN 805
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30694836|ref|NP_191418.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218525906|sp|Q0WN01.2|PP286_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g58590 gi|332646281|gb|AEE79802.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/663 (55%), Positives = 476/663 (71%), Gaps = 1/663 (0%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQ 60
MP+RN VSFN+II YS+ G V+ A +F M G+ P Q T GLLSC SL+ G Q
Sbjct: 75 MPERNKVSFNTIIKGYSKYGDVDKAWGVFSEMRYFGYLPNQSTVSGLLSCASLDVRAGTQ 134
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
L LK GLF ADAFVGT LL LYGR L+ VFEDMP KSL TWN ++S+ G G
Sbjct: 135 LHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFEDMPFKSLETWNHMMSLLGHRG 194
Query: 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVAN 180
F+++CMF F ELVR +LTESSF+GV+ G+S +DL+ +Q+H K G D E+ V N
Sbjct: 195 FLKECMFFFRELVRMGASLTESSFLGVLKGVSCVKDLDISKQLHCSATKKGLDCEISVVN 254
Query: 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240
SL++ Y +C AE+MF+D D+VSWN II A A+SEN KAL+L++ M P
Sbjct: 255 SLISAYGKCGNTHMAERMFQDAGSWDIVSWNAIICATAKSENPLKALKLFVSMPEHGFSP 314
Query: 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300
NQ T+V V+ + +Q G+ IH +IKN E + +G+AL+DFYAKC NLE + LCF
Sbjct: 315 NQGTYVSVLGVSSLVQLLSCGRQIHGMLIKNGCETGIVLGNALIDFYAKCGNLEDSRLCF 374
Query: 301 SEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360
I +KNIV WNAL+ GYA+K P + L +++LQ+G+RP E+TFS L+S +L QL
Sbjct: 375 DYIRDKNIVCWNALLSGYANKDGPICLSLFLQMLQMGFRPTEYTFSTALKSCCVTELQQL 434
Query: 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQ 420
H +I+RMGYE+ +YVL SLM SYAK+ L++DAL + + P +VVP NI+AGIY+R GQ
Sbjct: 435 HSVIVRMGYEDNDYVLSSLMRSYAKNQLMNDALLLLDWASGPTSVVPLNIVAGIYSRRGQ 494
Query: 421 YNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480
Y+E+VKL+S LE+PD VSWNI IAAC+ + ++EV+ELFK+M + I PD YTFVS+LS
Sbjct: 495 YHESVKLISTLEQPDTVSWNIAIAACSRSDYHEEVIELFKHMLQSNIRPDKYTFVSILSL 554
Query: 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVIT 540
CSKLC+L LGSS+HGLI KT+ +DTFVCN+LIDMYGKCGSI S +K+F E ++N+IT
Sbjct: 555 CSKLCDLTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLIT 614
Query: 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600
WTALIS LG++G+ Q ALEKF+E LGFKPDRV+ I++LTACRHGG+V+EGM LF++M
Sbjct: 615 WTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKM- 673
Query: 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYD 660
+ YGVEPEMDHY C VDLL R G+LKEAE +I MPFP +A +WRTFL+GC R + +
Sbjct: 674 KDYGVEPEMDHYRCAVDLLARNGYLKEAEHLIREMPFPADAPVWRTFLDGCNRFAEEQRN 733
Query: 661 TLN 663
TLN
Sbjct: 734 TLN 736
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110739166|dbj|BAF01499.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/663 (55%), Positives = 475/663 (71%), Gaps = 1/663 (0%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQ 60
MP+RN VSFN+II YS+ G V+ A +F M G+ P Q T GLLSC SL+ G Q
Sbjct: 75 MPERNKVSFNTIIKGYSKYGDVDKAWGVFSEMRYFGYLPNQSTVSGLLSCASLDVRAGTQ 134
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
L LK GLF ADAFVGT LL LYGR L+ VFEDMP KSL TWN ++S+ G G
Sbjct: 135 LHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFEDMPFKSLETWNHMMSLLGHRG 194
Query: 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVAN 180
F+++CMF F ELVR +LTESSF+GV+ G+S +DL+ +Q+H K G D E+ V N
Sbjct: 195 FLKECMFFFRELVRMGASLTESSFLGVLKGVSCVKDLDISKQLHCSATKKGLDCEISVVN 254
Query: 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240
SL++ Y +C AE+MF+D D+VSWN II A A+SEN KAL+L++ M P
Sbjct: 255 SLISAYGKCGNTHMAERMFQDAGSWDIVSWNAIICATAKSENPLKALKLFVSMPEHGFSP 314
Query: 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300
NQ T+V V+ + +Q G+ IH +IKN E + +G+AL+DFYAKC NLE + LCF
Sbjct: 315 NQGTYVSVLGVSSLVQLLSCGRQIHGMLIKNGCETGIVLGNALIDFYAKCGNLEDSRLCF 374
Query: 301 SEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360
I +KNIV WNAL+ GYA+K P + L +++LQ+G+RP E+TFS L+S +L QL
Sbjct: 375 DYIRDKNIVCWNALLSGYANKDGPICLSLFLQMLQMGFRPTEYTFSTALKSCCVTELQQL 434
Query: 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQ 420
H +I+RMGYE+ +YVL SLM SYAK+ L++DAL + + P +VVP NI+AGIY+R GQ
Sbjct: 435 HSVIVRMGYEDNDYVLSSLMRSYAKNQLMNDALLLLDWASGPTSVVPLNIVAGIYSRRGQ 494
Query: 421 YNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480
Y+E+VKL+S LE+PD VSWNI IAAC+ + ++EV+ELFK+M + I PD YTFVS+LS
Sbjct: 495 YHESVKLISTLEQPDTVSWNIAIAACSRSDYHEEVIELFKHMLQSNIRPDKYTFVSILSL 554
Query: 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVIT 540
CSKLC+L LGSS+HGLI KT+ +DTFVCN+LIDMYGKCGSI S +K+F E ++N+IT
Sbjct: 555 CSKLCDLTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLIT 614
Query: 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600
WTALIS LG++G+ Q ALEKF+E LGFKPDRV+ I++LTACRHGG+V+EGM LF++M
Sbjct: 615 WTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKM- 673
Query: 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYD 660
+ YGVEP MDHY C VDLL R G+LKEAE +I MPFP +A +WRTFL+GC R + +
Sbjct: 674 KDYGVEPGMDHYRCAVDLLARNGYLKEAEHLIREMPFPADAPVWRTFLDGCNRFAEEQRN 733
Query: 661 TLN 663
TLN
Sbjct: 734 TLN 736
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357130989|ref|XP_003567126.1| PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 297/656 (45%), Positives = 403/656 (61%), Gaps = 10/656 (1%)
Query: 1 MPDRNVV----SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPV 56
MP R+ FNS+I++ R G DA + M+ G PT FTF +LS S+
Sbjct: 1 MPSRDPPLSPSFFNSLIASRVRAGRGADAFSLLARMLAAGVAPTAFTFAPILSSPSVGTR 60
Query: 57 EGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIF 116
AQL +LK+GL +D + GTALLG + R G E + VF +MP ++ VTWN ++S+F
Sbjct: 61 RAAQLHPHILKSGLLHSDPYSGTALLGFFARDGRFGEALRVFGEMPARNAVTWNCLISLF 120
Query: 117 GKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYEL 176
++G+V+D +F F LV S L+E S V V+ + EQ+HG +K D
Sbjct: 121 VQYGYVKDAVFWFRGLVSSGDGLSEGSIVAVLPAFGSP------EQVHGFAMKIAMDSFS 174
Query: 177 LVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVD 236
VANSL+N Y C + +AEK+F + DVVSWNT+I A A S G+ EL+L M
Sbjct: 175 AVANSLLNSYCTCCAVCAAEKLFNWLMFTDVVSWNTMITAFARSNLPGRTFELFLMMQGQ 234
Query: 237 IVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGA 296
V P++TTF V+N+C + GK +HAK IK+ L VFV ++LVDFY KC + A
Sbjct: 235 GVLPDETTFSSVLNACTNINGHEHGKYVHAKSIKHNLNTRVFVNTSLVDFYTKCVGSKDA 294
Query: 297 HLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQ 356
EIS+K+ WNALI G + PT +L ++L+ G PNEFTFS +L+
Sbjct: 295 RKVLEEISDKSASCWNALISGRSDGDVPTLFVILRDMLRSGISPNEFTFSSLLKDPSLLD 354
Query: 357 LLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYN 416
L Q+H L+ R+GY + +YV ++++SY G ISDALA+ L+ V N++AG YN
Sbjct: 355 LWQIHSLVARLGYGSNDYVSSAIISSYVSHGFISDALAYGATLDPESCTVSMNVLAGAYN 414
Query: 417 RTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVS 476
R Y ET +LL + D +S +I I ACA NGDY E E F+ MR + DNY VS
Sbjct: 415 RAHMYQETKELLLHQQSSDNISCSIFITACARNGDYSEAFEYFRQMRILGHHFDNYVTVS 474
Query: 477 LLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR 536
LLS C K+ +L LG +HGLI KT SDT+V NML+DMY KCG I V+ F EM +R
Sbjct: 475 LLSICIKVNSLILGRLVHGLIIKTSSGCSDTYVHNMLLDMYAKCGRIEDCVRAFEEMENR 534
Query: 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELF 596
N+I+WT +IS L LNGF+++AL F+ ME G KPD+VA++AVL+ACRHGGLV+EGM++F
Sbjct: 535 NIISWTTVISGLALNGFSRKALAWFKAMEEAGLKPDKVAILAVLSACRHGGLVQEGMKIF 594
Query: 597 ERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQ 652
+ M Y E EM+HY CVVD+L + GHLK+A +I MPF P+ +IWRTFL+GC
Sbjct: 595 KCMEADYSTEAEMEHYICVVDMLCKCGHLKQAGSVIRGMPFRPSTIIWRTFLQGCN 650
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| TAIR|locus:2076456 | 741 | AT3G58590 "AT3G58590" [Arabido | 0.992 | 0.893 | 0.553 | 1.3e-195 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.707 | 0.677 | 0.316 | 1.2e-81 | |
| TAIR|locus:2159582 | 849 | SLG1 "AT5G08490" [Arabidopsis | 0.967 | 0.759 | 0.275 | 3.5e-75 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.727 | 0.570 | 0.262 | 6.5e-44 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.907 | 0.679 | 0.307 | 4.6e-73 | |
| TAIR|locus:2088827 | 700 | AT3G26540 [Arabidopsis thalian | 0.847 | 0.807 | 0.283 | 7.7e-70 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.734 | 0.663 | 0.323 | 1.2e-65 | |
| TAIR|locus:2117084 | 545 | AT4G18840 "AT4G18840" [Arabido | 0.410 | 0.502 | 0.375 | 1.4e-64 | |
| TAIR|locus:2007888 | 731 | AT1G17630 [Arabidopsis thalian | 0.437 | 0.399 | 0.337 | 9.1e-63 | |
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.779 | 0.756 | 0.299 | 2.7e-61 |
| TAIR|locus:2076456 AT3G58590 "AT3G58590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1876 (665.4 bits), Expect = 1.3e-195, Sum P(2) = 1.3e-195
Identities = 367/663 (55%), Positives = 476/663 (71%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQ 60
MP+RN VSFN+II YS+ G V+ A +F M G+ P Q T GLLSC SL+ G Q
Sbjct: 75 MPERNKVSFNTIIKGYSKYGDVDKAWGVFSEMRYFGYLPNQSTVSGLLSCASLDVRAGTQ 134
Query: 61 LQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120
L LK GLF ADAFVGT LL LYGR L+ VFEDMP KSL TWN ++S+ G G
Sbjct: 135 LHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFEDMPFKSLETWNHMMSLLGHRG 194
Query: 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVAN 180
F+++CMF F ELVR +LTESSF+GV+ G+S +DL+ +Q+H K G D E+ V N
Sbjct: 195 FLKECMFFFRELVRMGASLTESSFLGVLKGVSCVKDLDISKQLHCSATKKGLDCEISVVN 254
Query: 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240
SL++ Y +C AE+MF+D D+VSWN II A A+SEN KAL+L++ M P
Sbjct: 255 SLISAYGKCGNTHMAERMFQDAGSWDIVSWNAIICATAKSENPLKALKLFVSMPEHGFSP 314
Query: 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300
NQ T+V V+ + +Q G+ IH +IKN E + +G+AL+DFYAKC NLE + LCF
Sbjct: 315 NQGTYVSVLGVSSLVQLLSCGRQIHGMLIKNGCETGIVLGNALIDFYAKCGNLEDSRLCF 374
Query: 301 SEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360
I +KNIV WNAL+ GYA+K P + L +++LQ+G+RP E+TFS L+S +L QL
Sbjct: 375 DYIRDKNIVCWNALLSGYANKDGPICLSLFLQMLQMGFRPTEYTFSTALKSCCVTELQQL 434
Query: 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQ 420
H +I+RMGYE+ +YVL SLM SYAK+ L++DAL + + P +VVP NI+AGIY+R GQ
Sbjct: 435 HSVIVRMGYEDNDYVLSSLMRSYAKNQLMNDALLLLDWASGPTSVVPLNIVAGIYSRRGQ 494
Query: 421 YNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480
Y+E+VKL+S LE+PD VSWNI IAAC+ + ++EV+ELFK+M + I PD YTFVS+LS
Sbjct: 495 YHESVKLISTLEQPDTVSWNIAIAACSRSDYHEEVIELFKHMLQSNIRPDKYTFVSILSL 554
Query: 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVIT 540
CSKLC+L LGSS+HGLI KT+ +DTFVCN+LIDMYGKCGSI S +K+F E ++N+IT
Sbjct: 555 CSKLCDLTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLIT 614
Query: 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600
WTALIS LG++G+ Q ALEKF+E LGFKPDRV+ I++LTACRHGG+V+EGM LF++M
Sbjct: 615 WTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKM- 673
Query: 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYD 660
+ YGVEPEMDHY C VDLL R G+LKEAE +I MPFP +A +WRTFL+GC R + +
Sbjct: 674 KDYGVEPEMDHYRCAVDLLARNGYLKEAEHLIREMPFPADAPVWRTFLDGCNRFAEEQRN 733
Query: 661 TLN 663
TLN
Sbjct: 734 TLN 736
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
Identities = 153/484 (31%), Positives = 256/484 (52%)
Query: 180 NSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVF 239
NS+V + + A+ +F+ + RD +WN+++ A+ + +AL + M +
Sbjct: 90 NSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFV 149
Query: 240 PNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLC 299
N+ +F V+++C+GL + G +H+ + K+ DV++GSALVD Y+KC N+ A
Sbjct: 150 LNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRV 209
Query: 300 FSEISNKNIVSWNALILGYASKSSPTSIFLLIEL-LQLGYRPNEFTFSHVLRSSLAFQLL 358
F E+ ++N+VSWN+LI + + ++ L+ P+E T + V+ + + +
Sbjct: 210 FDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAI 269
Query: 359 ----QLHCLIIRMGYENYEYVLGSLMTS-YAKSGLISDALAFVTALNIPRAVVPANIIAG 413
++H +++ + +L + YAK I +A ++ I + ++I+G
Sbjct: 270 KVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISG 329
Query: 414 IYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYT 473
Y + +++ ++VSWN +IA NG+ +E L LF ++ + P +Y+
Sbjct: 330 -YAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388
Query: 474 FVSLLSACSKLCNLALGSSLH-GLIKKTEIISS----DTFVCNMLIDMYGKCGSIGSSVK 528
F ++L AC+ L L LG H ++K S D FV N LIDMY KCG +
Sbjct: 389 FANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYL 448
Query: 529 IFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGL 588
+F +M +R+ ++W A+I NG+ ALE FREM G KPD + +I VL+AC H G
Sbjct: 449 VFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGF 508
Query: 589 VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFL 648
V EG F M R +GV P DHY C+VDLL R G L+EA+ +I MP P+++IW + L
Sbjct: 509 VEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLL 568
Query: 649 EGCQ 652
C+
Sbjct: 569 AACK 572
|
|
| TAIR|locus:2159582 SLG1 "AT5G08490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 185/671 (27%), Positives = 347/671 (51%)
Query: 1 MPDRNVVSFNSIISAYS-RCGYVEDALRMFLYM-INRGFEPTQFTFGGLLS-CDSL-NPV 56
M + V +N +++ S CG + +R F M +P+ TF +L C L +
Sbjct: 82 MDSLDPVVWNIVLTGLSVSCG--RETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSY 139
Query: 57 EGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCL-DEVVSVFEDMPRKSLVTWNSIVSI 115
G + + ++K GL D VG AL+ +Y + G + + + F+ + K +V+WN+I++
Sbjct: 140 NGKSMHSYIIKAGLE-KDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAG 198
Query: 116 FGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSN-EQDL--EFGEQIHGLVIKNGF 172
F ++ + D FC +++ ++ V+ ++ ++++ G QIH V++ +
Sbjct: 199 FSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQRSW 258
Query: 173 -DYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYL 231
+ V NSLV+ Y + I A +F + +D+VSWN +I A + + KA +L+
Sbjct: 259 LQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFH 318
Query: 232 RM-SVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNA--LECDVFVGSALVDFYA 288
+ V P+ T + ++ CA L + GK IH+ +++++ LE D VG+AL+ FYA
Sbjct: 319 NLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLE-DTSVGNALISFYA 377
Query: 289 KCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIF-LLIELLQLGYRPNEFTFSH 347
+ + A+ FS +S K+I+SWNA++ +A LL LL + T
Sbjct: 378 RFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEAITLDSVTILS 437
Query: 348 VLRSSLAFQ----LLQLHCLIIRMG--YENYEYVLGS-LMTSYAKSGLISDALAFVTALN 400
+L+ + Q + ++H ++ G ++ E LG+ L+ +YAK G + A L+
Sbjct: 438 LLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVEYAHKIFLGLS 497
Query: 401 IPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFK 460
R +V N + Y +G +++ L +++ D+ +W++++ A + E + +F+
Sbjct: 498 ERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFR 557
Query: 461 YMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC 520
++A + P+ T ++LL C++L +L L HG I + + D + L+D+Y KC
Sbjct: 558 EIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGL--GDIRLKGTLLDVYAKC 615
Query: 521 GSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVL 580
GS+ + +F R+++ +TA+++ ++G + AL + M KPD V + +L
Sbjct: 616 GSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTML 675
Query: 581 TACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPN 640
TAC H GL+++G+++++ + +G++P M+ Y C VDL+ R G L +A +T MP PN
Sbjct: 676 TACCHAGLIQDGLQIYDSIRTVHGMKPTMEQYACAVDLIARGGRLDDAYSFVTQMPVEPN 735
Query: 641 ALIWRTFLEGC 651
A IW T L C
Sbjct: 736 ANIWGTLLRAC 746
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 481 (174.4 bits), Expect = 6.5e-44, P = 6.5e-44
Identities = 134/510 (26%), Positives = 241/510 (47%)
Query: 163 IHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRD--VVSWNTIIGALAES 220
IH ++ G L + + L++ Y + A + + D V WN++I + ++
Sbjct: 47 IHQKLLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDN 105
Query: 221 ENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVG 280
K L L+ M P+ TF +V +C + + G+S HA + +VFVG
Sbjct: 106 GCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVG 165
Query: 281 SALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELL--QLGY 338
+ALV Y++C +L A F E+S ++VSWN++I YA P + + + G
Sbjct: 166 NALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGC 225
Query: 339 RPNEFTFSHVLR--SSLAFQLL--QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALA 394
RP+ T +VL +SL L QLHC + +V L+ YAK G++ +A
Sbjct: 226 RPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANT 285
Query: 395 FVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE----RPDIVSWNIVIAACAHNG 450
+ +++ + VV N + Y++ G++ + V+L +++ + D+V+W+ I+ A G
Sbjct: 286 VFSNMSV-KDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRG 344
Query: 451 DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEII------S 504
E L + + M ++ I P+ T +S+LS C+ + L G +H K I
Sbjct: 345 LGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHG 404
Query: 505 SDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNVITWTALISALGLNGFAQRALEKFR 562
+ V N LIDMY KC + ++ +F+ ++ +R+V+TWT +I +G A +ALE
Sbjct: 405 DENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLS 464
Query: 563 EM--EFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLV 620
EM E +P+ + L AC +R G ++ R+ + +C++D+
Sbjct: 465 EMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYA 524
Query: 621 RYGHLKEAEKIITTMPFPPNALIWRTFLEG 650
+ G + +A + M N + W + + G
Sbjct: 525 KCGSISDARLVFDNM-MAKNEVTWTSLMTG 553
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 202/656 (30%), Positives = 332/656 (50%)
Query: 18 RCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDS-LNPVE-GAQLQASVLKNGLFCADA 75
R + +A+ ++ MI G +P + F LL + L +E G Q+ A V K G
Sbjct: 74 RSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSV 133
Query: 76 FVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRS 135
V L+ LY + G V VF+ + ++ V+WNS++S E + F ++
Sbjct: 134 TVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDE 193
Query: 136 EVALTESSFVGVIHGLSN---EQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGI 192
V + + V V+ SN + L G+Q+H ++ G + + N+LV MY + +
Sbjct: 194 NVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKL 252
Query: 193 WSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLR-MSVDIVFPNQTTFVYVINS 251
S++ + RD+V+WNT++ +L ++E +ALE YLR M ++ V P++ T V+ +
Sbjct: 253 ASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALE-YLREMVLEGVEPDEFTISSVLPA 311
Query: 252 CAGLQNSILGKSIHAKVIKN-ALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVS 310
C+ L+ GK +HA +KN +L+ + FVGSALVD Y C + F + ++ I
Sbjct: 312 CSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL 371
Query: 311 WNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMG-Y 369
WNA+I GY+ LL +G + + +L +S + C +R G +
Sbjct: 372 WNAMIAGYSQNEHDKEALLLF----IGMEES----AGLLANSTTMAGVVPAC--VRSGAF 421
Query: 370 ENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLS 429
E + G ++ K GL D FV N + +Y+R G+ + +++
Sbjct: 422 SRKEAIHGFVV----KRGLDRDR--FVQ-----------NTLMDMYSRLGKIDIAMRIFG 464
Query: 430 QLERPDIVSWNIVIAACAHNGDYKEVLELFKYMR---------AARIY--PDNYTFVSLL 478
++E D+V+WN +I + +++ L L M+ A+R+ P++ T +++L
Sbjct: 465 KMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTIL 524
Query: 479 SACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNV 538
+C+ L LA G +H K + ++D V + L+DMY KCG + S K+F+++ +NV
Sbjct: 525 PSCAALSALAKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNV 583
Query: 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFER 598
ITW +I A G++G Q A++ R M G KP+ V I+V AC H G+V EG+ +F
Sbjct: 584 ITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYV 643
Query: 599 MNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPN-ALIWRTFLEGCQR 653
M YGVEP DHY CVVDLL R G +KEA +++ MP N A W + L G R
Sbjct: 644 MKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLL-GASR 698
|
|
| TAIR|locus:2088827 AT3G26540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
Identities = 166/586 (28%), Positives = 284/586 (48%)
Query: 85 YGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSF 144
YG+ GC+D+ +FE+MP + +WN++++ ++G ++ +F + R V TE+SF
Sbjct: 106 YGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSF 165
Query: 145 VGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI 204
GV+ DL Q+H V+K G+ + + S+V++Y +C + A ++F ++
Sbjct: 166 AGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVN 225
Query: 205 RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSI 264
VSWN I+ E +A+ ++ +M V P T V+ +C+ +GK I
Sbjct: 226 PSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVI 285
Query: 265 HAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSP 324
HA +K ++ D V +++ D Y KCD LE A F + +K++ SW + + GYA
Sbjct: 286 HAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLT 345
Query: 325 TSIFLLIELLQ----LGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLM 380
L +L+ + + + H A L L +R EN + V +
Sbjct: 346 REARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTL----MRQEIENIDNVTLVWI 401
Query: 381 TSYAKSGLISD------ALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQL-ER 433
+ SG ISD A F+ V+ AN + +Y + G Q+ E
Sbjct: 402 LNVC-SG-ISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSEL 459
Query: 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSL 493
D VSWN ++ A G ++ L F+ M+ P YT +LL+ C+ + L LG ++
Sbjct: 460 RDEVSWNALLTGVARVGRSEQALSFFEGMQV-EAKPSKYTLATLLAGCANIPALNLGKAI 518
Query: 494 HGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGF 553
HG + + + D + ++DMY KC ++++F E R++I W ++I NG
Sbjct: 519 HGFLIR-DGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGR 577
Query: 554 AQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYH 613
++ E F +E G KPD V + +L AC G V G + F M+ Y + P+++HY
Sbjct: 578 SKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHYD 637
Query: 614 CVVDLLVRYGHLKEAEKIITTMPF-PPNALIWRTFLEGCQRCRIAK 658
C+++L +YG L + E+ + MPF PP ++ R + CQR R +K
Sbjct: 638 CMIELYCKYGCLHQLEEFLLLMPFDPPMQMLTR-INDACQRYRWSK 682
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 162/501 (32%), Positives = 257/501 (51%)
Query: 161 EQIHGLVIKNGFDYELLVANSLVNM--YFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALA 218
+Q HG +I+ G + A+ L M A + A K+F ++ + +WNT+I A A
Sbjct: 47 KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYA 106
Query: 219 ESENFGKALELYLRM-SVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDV 277
+ ++ +L M S +PN+ TF ++I + A + + LG+S+H +K+A+ DV
Sbjct: 107 SGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDV 166
Query: 278 FVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQL- 336
FV ++L+ Y C +L+ A F+ I K++VSWN++I G+ K SP L + ++
Sbjct: 167 FVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESE 226
Query: 337 GYRPNEFTFSHVLRSSLAFQLLQLH---CLIIRMGYENYEYVLGSLMTS-YAKSGLISDA 392
+ + T VL + + L+ C I N L + M Y K G I DA
Sbjct: 227 DVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDA 286
Query: 393 LAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDY 452
A+ V ++ G Y + Y ++L+ + + DIV+WN +I+A NG
Sbjct: 287 KRLFDAMEEKDNVTWTTMLDG-YAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKP 345
Query: 453 KEVLELFKYMRAARIYPDNY-TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCN 511
E L +F ++ + N T VS LSAC+++ L LG +H IKK I + V +
Sbjct: 346 NEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGI-RMNFHVTS 404
Query: 512 MLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKP 571
LI MY KCG + S ++FN + R+V W+A+I L ++G A++ F +M+ KP
Sbjct: 405 ALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKP 464
Query: 572 DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKI 631
+ V V AC H GLV E LF +M +YG+ PE HY C+VD+L R G+L++A K
Sbjct: 465 NGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKF 524
Query: 632 ITTMPFPPNALIWRTFLEGCQ 652
I MP PP+ +W L C+
Sbjct: 525 IEAMPIPPSTSVWGALLGACK 545
|
|
| TAIR|locus:2117084 AT4G18840 "AT4G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 104/277 (37%), Positives = 164/277 (59%)
Query: 378 SLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIV 437
SL+++Y + GL+ +A A + R V N + Y G E ++ + D+V
Sbjct: 211 SLLSAYLEKGLVDEARALFDEME-ERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVV 269
Query: 438 SWNIVIAACAHNGDYKEVLELF-KYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGL 496
SWN ++ A AH G Y EVLE+F K + + PD +T VS+LSAC+ L +L+ G +H
Sbjct: 270 SWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVY 329
Query: 497 IKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQR 556
I K I + F+ L+DMY KCG I ++++F + R+V TW ++IS L ++G +
Sbjct: 330 IDKHGI-EIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKD 388
Query: 557 ALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616
ALE F EM + GFKP+ + I VL+AC H G++ + +LFE M+ Y VEP ++HY C+V
Sbjct: 389 ALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMV 448
Query: 617 DLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQR 653
DLL R G ++EAE+++ +P +++ + L C+R
Sbjct: 449 DLLGRMGKIEEAEELVNEIPADEASILLESLLGACKR 485
|
|
| TAIR|locus:2007888 AT1G17630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 9.1e-63, Sum P(2) = 9.1e-63
Identities = 102/302 (33%), Positives = 170/302 (56%)
Query: 359 QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRT 418
++H +I+ G+E Y +L+ Y K G + DA + + + N + +
Sbjct: 315 KVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIR-NKGIESWNSLITSFVDA 373
Query: 419 GQYNETVKLLSQLE--------RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD 470
G+ +E + L S+LE + ++V+W VI C G + LE F+ M+ +++ +
Sbjct: 374 GKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLAN 433
Query: 471 NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIF 530
+ T +LS C++L L LG +HG + +T + S + V N L++MY KCG + +F
Sbjct: 434 SVTICCILSICAELPALNLGREIHGHVIRTSM-SENILVQNALVNMYAKCGLLSEGSLVF 492
Query: 531 NEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590
+ D+++I+W ++I G++GFA++AL F M GF PD +AL+AVL+AC H GLV
Sbjct: 493 EAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVE 552
Query: 591 EGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEG 650
+G E+F M++ +G+EP+ +HY C+VDLL R G LKEA +I+ MP P + L
Sbjct: 553 KGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNS 612
Query: 651 CQ 652
C+
Sbjct: 613 CR 614
|
|
| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 160/534 (29%), Positives = 268/534 (50%)
Query: 128 LFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYF 187
L + ++ S F+ ++ G+ D +F +Q+H I G L +
Sbjct: 21 LLMSTITESISNDYSRFISIL-GVCKTTD-QF-KQLHSQSITRGVAPNPTFQKKLFVFWC 77
Query: 188 QCAG--IWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTF 245
G + A K+F + DVV WN +I ++ + G+ + LYL M + V P+ TF
Sbjct: 78 SRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTF 137
Query: 246 VYVINSCAGLQNSIL-GKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEIS 304
+++N ++ GK +H V+K L +++V +ALV Y+ C ++ A F
Sbjct: 138 PFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRC 197
Query: 305 NKNIVSWNALILGY-ASKSSPTSIFLLIELLQLGYRPNEFTFSHVLR--SSLAFQLL--Q 359
+++ SWN +I GY K SI LL+E+ + P T VL S + + L +
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKR 257
Query: 360 LHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTG 419
+H + E + +L+ +YA G + A+ ++ + +I+ G R G
Sbjct: 258 VHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVER-G 316
Query: 420 QYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLS 479
Q+ D +SW I+I G + E LE+F+ M++A + PD +T VS+L+
Sbjct: 317 NLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLT 376
Query: 480 ACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVI 539
AC+ L +L +G + I K +I +D V N LIDMY KCG + K+F++M R+
Sbjct: 377 ACAHLGSLEIGEWIKTYIDKNKI-KNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKF 435
Query: 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599
TWTA++ L NG Q A++ F +M+ + +PD + + VL+AC H G+V + + F +M
Sbjct: 436 TWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKM 495
Query: 600 NRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQR 653
+ +EP + HY C+VD+L R G +KEA +I+ MP PN+++W L G R
Sbjct: 496 RSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALL-GASR 548
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WN01 | PP286_ARATH | No assigned EC number | 0.5535 | 0.9925 | 0.8933 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 667 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-95 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-66 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-64 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-57 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-44 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-39 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-35 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = 1e-95
Identities = 171/581 (29%), Positives = 274/581 (47%), Gaps = 40/581 (6%)
Query: 77 VGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSE 136
+G A+L ++ R G L VF MP + L +WN +V + K G+ ++ + L+ ++ +
Sbjct: 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182
Query: 137 VALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAE 196
V +F V+ DL G ++H V++ GF+ ++ V N+L+ MY +C + SA
Sbjct: 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242
Query: 197 KMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQ 256
+F + RD +SWN +I E+ + LEL+ M V P+ T VI++C L
Sbjct: 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302
Query: 257 NSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALIL 316
+ LG+ +H V+K DV V ++L+ Y + A FS + K+ VSW A+I
Sbjct: 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362
Query: 317 GYASKSSPTSIFLLIELLQL-GYRPNEFTFSHVLRSSLAFQLL----QLHCLIIRMGYEN 371
GY P L++ P+E T + VL + L +LH L R G +
Sbjct: 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422
Query: 372 YEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQL 431
Y V +L+ Y+K I AL ++ +
Sbjct: 423 YVVVANALIEMYSKCKCIDKAL--------------------------------EVFHNI 450
Query: 432 ERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGS 491
D++SW +IA N E L F+ M + P++ T ++ LSAC+++ L G
Sbjct: 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509
Query: 492 SLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLN 551
+H + +T I D F+ N L+D+Y +CG + + FN +++V++W L++ +
Sbjct: 510 EIHAHVLRTGI-GFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAH 567
Query: 552 GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDH 611
G A+E F M G PD V I++L AC G+V +G+E F M Y + P + H
Sbjct: 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
Query: 612 YHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQ 652
Y CVVDLL R G L EA I MP P+ +W L C+
Sbjct: 628 YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR 668
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 233 bits (595), Expect = 3e-66
Identities = 150/511 (29%), Positives = 257/511 (50%), Gaps = 32/511 (6%)
Query: 119 HGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLV 178
HG +E + L + V + E ++V + ++ +E G ++ + + + +
Sbjct: 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123
Query: 179 ANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIV 238
N++++M+ + + A +F + RD+ SWN ++G A++ F +AL LY RM V
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 239 FPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHL 298
P+ TF V+ +C G+ + G+ +HA V++ E DV V +AL+ Y KC ++ A L
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 299 CFSEISNKNIVSWNALILGY-ASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQL 357
F + ++ +SWNA+I GY + + L + +L P+ T + V+ + +L
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC---EL 300
Query: 358 LQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNR 417
L R+G E + YV+ K+G D V N + +Y
Sbjct: 301 LG----DERLGREMHGYVV--------KTGFAVD-------------VSVCNSLIQMYLS 335
Query: 418 TGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSL 477
G + E K+ S++E D VSW +I+ NG + LE + M + PD T S+
Sbjct: 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395
Query: 478 LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN 537
LSAC+ L +L +G LH L ++ +IS V N LI+MY KC I ++++F+ + +++
Sbjct: 396 LSACACLGDLDVGVKLHELAERKGLISY-VVVANALIEMYSKCKCIDKALEVFHNIPEKD 454
Query: 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFE 597
VI+WT++I+ L LN AL FR+M L KP+ V LIA L+AC G + G E+
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHA 513
Query: 598 RMNRSYGVEPEMDHYHCVVDLLVRYGHLKEA 628
+ R+ G+ + + ++DL VR G + A
Sbjct: 514 HVLRT-GIGFDGFLPNALLDLYVRCGRMNYA 543
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 2e-64
Identities = 151/557 (27%), Positives = 264/557 (47%), Gaps = 47/557 (8%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLL-SCDSL-NPVEG 58
MP+R++ S+N ++ Y++ GY ++AL ++ M+ G P +TF +L +C + + G
Sbjct: 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206
Query: 59 AQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGK 118
++ A V++ G F D V AL+ +Y + G + VF+ MPR+ ++WN+++S + +
Sbjct: 207 REVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE 265
Query: 119 HGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLV 178
+G + + LF + V + VI D G ++HG V+K GF ++ V
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325
Query: 179 ANSLVNMYFQCAGIW-SAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDI 237
NSL+ MY G W AEK+F +E +D VSW +I ++ KALE Y M D
Sbjct: 326 CNSLIQMYLS-LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384
Query: 238 VFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAH 297
V P++ T V+++CA L + +G +H + L V V +AL++ Y+KC ++ A
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
Query: 298 LCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQL 357
F I K+++SW ++I G + + + L +PN T L +
Sbjct: 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504
Query: 358 L----QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAG 413
L ++H ++R G ++ +L+ Y + G ++ A
Sbjct: 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN------------------- 545
Query: 414 IYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYT 473
Q+N K D+VSWNI++ +G +ELF M + + PD T
Sbjct: 546 ------QFNSHEK--------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 474 FVSLLSACSKLCNLALGSSL-HGLIKKTEIISS-DTFVCNMLIDMYGKCGSIGSSVKIFN 531
F+SLL ACS+ + G H + +K I + + C ++D+ G+ G + + N
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--VVDLLGRAGKLTEAYNFIN 649
Query: 532 EM-TDRNVITWTALISA 547
+M + W AL++A
Sbjct: 650 KMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 2e-57
Identities = 130/468 (27%), Positives = 213/468 (45%), Gaps = 44/468 (9%)
Query: 194 SAEKMFKDVEIR-DVVSWNTIIGALAESENFGKALELY--LRMSVDIVFPNQTTFVYVIN 250
S + D +IR VS + I L +ALEL+ L P +T+ ++
Sbjct: 73 SKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP-ASTYDALVE 131
Query: 251 SCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVS 310
+C L++ K+++ V + E D ++ + ++ + KC L A F E+ +N+ S
Sbjct: 132 ACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS 191
Query: 311 WNALILGYASKSSPTSIF-LLIELLQLGYRPNEFTFSHVLRSSLAFQLL----QLHCLII 365
W +I G + F L E+ + G TF +LR+S QLHC ++
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 366 RMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETV 425
+ G +V +L+ Y+K G I DA R V
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDA----------RCV-------------------- 281
Query: 426 KLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC 485
+ V+WN ++A A +G +E L L+ MR + + D +TF ++ S+L
Sbjct: 282 --FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339
Query: 486 NLALGSSLH-GLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTAL 544
L H GLI+ D L+D+Y K G + + +F+ M +N+I+W AL
Sbjct: 340 LLEHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397
Query: 545 ISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYG 604
I+ G +G +A+E F M G P+ V +AVL+ACR+ GL +G E+F+ M+ ++
Sbjct: 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457
Query: 605 VEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQ 652
++P HY C+++LL R G L EA +I PF P +W L C+
Sbjct: 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 6e-44
Identities = 127/489 (25%), Positives = 222/489 (45%), Gaps = 87/489 (17%)
Query: 159 FGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALA 218
+ ++ V +GF+ + + N ++ M+ +C + A ++F ++ R++ SW TIIG L
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLV 200
Query: 219 ESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVF 278
++ N+ +A L+ M D TFV ++ + AGL ++ G+ +H V+K + D F
Sbjct: 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260
Query: 279 VGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKS-SPTSIFLLIELLQLG 337
V AL+D Y+KC ++E A F + K V+WN+++ GYA S ++ L E+ G
Sbjct: 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 338 YRPNEFTFSHVLRSSLAFQLL----QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDAL 393
++FTFS ++R LL Q H +IR G+ +L+ Y+K G + DA
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA- 379
Query: 394 AFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYK 453
R V ++ R +++SWN +IA ++G
Sbjct: 380 ---------RNV----------------------FDRMPRKNLISWNALIAGYGNHGRGT 408
Query: 454 EVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNML 513
+ +E+F+ M A + P++ TF+++LSAC GL ++
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSAC----------RYSGLSEQ-------------- 444
Query: 514 IDMYGKCGSIGSSVKIFNEMTDRNVIT-----WTALISALGLNGFAQRALEKFREMEFLG 568
G +IF M++ + I + +I LG G A R
Sbjct: 445 ----GW--------EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--- 489
Query: 569 FKPDRVALIAVLTACRHGGLVREGMELFE-RMNRSYGVEPE-MDHYHCVVDLLVRYGHLK 626
FKP A+LTACR + + +EL + YG+ PE +++Y +++L G
Sbjct: 490 FKPTVNMWAALLTACR----IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545
Query: 627 EAEKIITTM 635
EA K++ T+
Sbjct: 546 EAAKVVETL 554
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 7e-39
Identities = 77/255 (30%), Positives = 135/255 (52%), Gaps = 3/255 (1%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLL--SCDSLNPVEG 58
MP+RN+ S+ +II G +A +F M G + TF +L S + G
Sbjct: 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243
Query: 59 AQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGK 118
QL VLK G+ D FV AL+ +Y + G +++ VF+ MP K+ V WNS+++ +
Sbjct: 244 QQLHCCVLKTGV-VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 119 HGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLV 178
HG+ E+ + L+ E+ S V++ + +F +I S LE +Q H +I+ GF +++
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 179 ANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIV 238
+LV++Y + + A +F + ++++SWN +I KA+E++ RM + V
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 239 FPNQTTFVYVINSCA 253
PN TF+ V+++C
Sbjct: 423 APNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 2e-35
Identities = 92/346 (26%), Positives = 160/346 (46%), Gaps = 3/346 (0%)
Query: 7 VSFNSIISAYSRCGYVEDALRMF-LYMINRGFEPTQFTFGGLL-SCDSLNPVEGAQLQAS 64
VS S I CG +AL +F + F T+ L+ +C +L + +
Sbjct: 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW 147
Query: 65 VLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVED 124
+++ F D ++ +L ++ + G L + +F++MP ++L +W +I+ G +
Sbjct: 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYRE 207
Query: 125 CMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVN 184
LF E+ +FV ++ + G+Q+H V+K G + V+ +L++
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 185 MYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTT 244
MY +C I A +F + + V+WN+++ A +AL LY M V +Q T
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 245 FVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEIS 304
F +I + L K HA +I+ D+ +ALVD Y+K +E A F +
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 305 NKNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVL 349
KN++SWNALI GY + T ++ + ++ G PN TF VL
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 1e-20
Identities = 52/172 (30%), Positives = 95/172 (55%), Gaps = 3/172 (1%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGA 59
MP++ V++NS+++ Y+ GY E+AL ++ M + G QFTF ++ L +E A
Sbjct: 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344
Query: 60 -QLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGK 118
Q A +++ G F D TAL+ LY + G +++ +VF+ MPRK+L++WN++++ +G
Sbjct: 345 KQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403
Query: 119 HGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKN 170
HG + +F ++ VA +F+ V+ E G +I + +N
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 46/195 (23%), Positives = 89/195 (45%), Gaps = 7/195 (3%)
Query: 444 AACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEII 503
A C+H G ++ L+L + M+ R+ D +V+L C + GS +
Sbjct: 60 ALCSH-GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS-SHP 117
Query: 504 SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFRE 563
S + N ++ M+ + G + + +F +M +R++ +W L+ G+ AL +
Sbjct: 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR 177
Query: 564 MEFLGFKPDRVALIAVLTACRHGGL--VREGMELFERMNRSYGVEPEMDHYHCVVDLLVR 621
M + G +PD VL C GG+ + G E+ + R +G E ++D + ++ + V+
Sbjct: 178 MLWAGVRPDVYTFPCVLRTC--GGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVK 234
Query: 622 YGHLKEAEKIITTMP 636
G + A + MP
Sbjct: 235 CGDVVSARLVFDRMP 249
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSK 483
PD+V++N +I G +E L+LF M+ I P+ YT+ L+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-10
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 5 NVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSC 50
+VV++N++I Y + G VE+AL++F M RG +P +T+ L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 47/209 (22%), Positives = 92/209 (44%), Gaps = 11/209 (5%)
Query: 433 RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSS 492
+ D + +I+ CA +G + E+F M A + + +TF +L+ C++ +A
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 493 LHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT------DRNVITWTALIS 546
+G I +++ + D V N LI G+ G++ + + EM D + IT AL+
Sbjct: 529 AYG-IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587
Query: 547 ALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVE 606
A G RA E ++ + K + +C G + +++ M + GV+
Sbjct: 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVK 646
Query: 607 PEMDHYHCVVDLLVRYGHLKEAEKIITTM 635
P+ + +VD+ GH + +K +
Sbjct: 647 PDEVFFSALVDVA---GHAGDLDKAFEIL 672
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 4e-09
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 10/209 (4%)
Query: 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNL-ALGSS 492
P + ++N++++ CA + D L + + ++ A + D + +L+S C+K + A+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 493 LHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNV----ITWTALISAL 548
H ++ + TF LID + G + + + M +NV + + ALISA
Sbjct: 495 FHEMVNAGVEANVHTF--GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 549 GLNGFAQRALEKFREM--EFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVE 606
G +G RA + EM E PD + + A++ AC + G V E+++ M Y ++
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ-MIHEYNIK 611
Query: 607 PEMDHYHCVVDLLVRYGHLKEAEKIITTM 635
+ Y V+ + G A I M
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPV--EG 58
MP +N++S+N++I+ Y G A+ MF MI G P TF +LS + + +G
Sbjct: 386 MPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 59 AQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVT-WNSIVS 114
++ S+ +N A ++ L GR G LDE ++ P K V W ++++
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLT 502
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 49/236 (20%), Positives = 110/236 (46%), Gaps = 11/236 (4%)
Query: 427 LLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAAR--IYPDNYTFVSLLSACSKL 484
+ S+ +PD V +N +I+AC +G ++ M+A I PD+ T +L+ AC+
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 485 CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNV----IT 540
+ ++ +I + I + V + ++ + G ++ I+++M + V +
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPE-VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600
++AL+ G G +A E ++ G K V+ +++ AC + ++ +EL+E +
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI- 710
Query: 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP---FPPNALIWRTFLEGCQR 653
+S + P + + ++ L L +A ++++ M PN + + L +R
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 45/229 (19%)
Query: 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARI--YPDNYTFVSLLSACSKLCNLALGS 491
PD ++ ++ ACA+ G E+++ + I P+ YT +++CS+ +
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA--VNSCSQKGDWDFAL 634
Query: 492 SLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR--------------- 536
S++ +KK + + F + L+D+ G G + + +I + +
Sbjct: 635 SIYDDMKKKGVKPDEVFF-SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693
Query: 537 ------------------------NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD 572
V T ALI+AL +ALE EM+ LG P+
Sbjct: 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753
Query: 573 RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVR 621
+ +L A G++L + + G++P + C+ L +R
Sbjct: 754 TITYSILLVASERKDDADVGLDLLSQA-KEDGIKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 8e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD 470
V++N +I G +E LELFK M+ I PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-06
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR----NVITWTALISAL 548
D N LID Y K G + ++K+FNEM R NV T++ LI L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 206 DVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCA 253
DVV++NT+I + +AL+L+ M + PN T+ +I+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 7 VSFNSIISAYSRCGYVEDALRMFLYMINRGFEPT 40
V++N++I + G VE+AL +F M RG EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 7 VSFNSIISAYSRCGYVEDALRMFLYMINRGF 37
V++NS+IS Y + G +E+AL +F M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 6e-05
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYP 469
+ ++N ++ A A GD L + + M+A+ + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARI 467
V++N +I+ G +E LELFK M+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 50/233 (21%), Positives = 106/233 (45%), Gaps = 11/233 (4%)
Query: 9 FNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLK 67
+ ++IS ++ G V+ +F M+N G E TFG L+ C V A +++
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 68 NGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSL------VTWNSIVSIFGKHGF 121
+ D V AL+ G+ G +D V +M ++ +T +++ G
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 122 VEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANS 181
V+ ++ + + T + ++ S + D +F I+ + K G + + ++
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 182 LVNMYFQCAGIWSAEKMFKDVEIRDV----VSWNTIIGALAESENFGKALELY 230
LV++ + A ++ +D + + VS+++++GA + ++N+ KALELY
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV 574
+V+T+ LI G + AL+ F EM+ G KP+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVY 39
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 6e-04
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 5 NVVSFNSIISAYSRCGYVEDALRMFLYM 32
+VV++N++I R G V++A+ + M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 6 VVSFNSIISAYSRCGYVEDALRMFLYMINRGFEP 39
+ ++N+++ A ++ G + AL + M G +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 104 KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSN 153
+VT+N+++ + K G VE+ + LF E+ + + ++ +I GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 306 KNIVSWNALILGYASKSSPTSIF-LLIELLQLGYRPNEFTFS 346
++V++N LI GY K L E+ + G +PN +T+S
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYS 42
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKPD 572
+T+ LI L G + ALE F+EM+ G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.66 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.63 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.39 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.39 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.37 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.36 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.34 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.31 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.3 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.28 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.19 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.19 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.19 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.16 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.12 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.12 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.07 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.05 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.04 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.02 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.0 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.0 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.99 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.97 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.96 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.96 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.95 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.9 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.88 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.85 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.84 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.7 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.7 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.64 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.59 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.58 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.5 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.46 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.43 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.31 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.3 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.3 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.28 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.27 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.27 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.25 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.24 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.23 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.19 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.19 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.18 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.18 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.17 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.17 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.16 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.16 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.15 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.14 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.1 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.03 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.01 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.95 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.94 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.93 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.92 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.92 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.88 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.87 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.86 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.81 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.75 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.74 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.68 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.64 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.58 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.54 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.49 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.42 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.41 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.39 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.34 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.32 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.28 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.26 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.26 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.19 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.17 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.16 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.14 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.12 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.11 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.08 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.08 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.06 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.04 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.99 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.97 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.95 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.95 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.93 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.92 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.91 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.87 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.85 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.8 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.76 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.73 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.72 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.71 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.63 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.61 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.51 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.49 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.47 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.47 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.38 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.37 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.34 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.33 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.31 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.3 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.26 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.24 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.18 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.11 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.06 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.05 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.82 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.8 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.8 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.67 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.65 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.63 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.62 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.51 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.36 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.34 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.29 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.18 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.92 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.92 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.83 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.79 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.58 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.58 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.28 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.17 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.1 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.06 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.05 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.78 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.77 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.73 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.72 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.59 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 93.52 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.37 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.36 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.32 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.29 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.23 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.94 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.94 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.65 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.59 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.58 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.58 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.57 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.45 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.32 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 92.2 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.1 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.97 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.56 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.56 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.54 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.34 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.13 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.07 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.0 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.8 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.53 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.38 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 89.82 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.74 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.59 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.58 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 89.36 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 89.29 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 88.95 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.87 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.72 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.05 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 87.78 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.69 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.4 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.34 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.29 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.28 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 87.26 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.13 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 87.07 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.05 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.88 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.79 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.69 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.62 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.48 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 86.41 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.18 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 85.87 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.85 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 85.48 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.2 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 85.11 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.11 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.92 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 84.82 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.71 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.51 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 84.5 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.29 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 84.17 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.4 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.99 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 82.57 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 82.04 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.86 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.8 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 80.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 80.77 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 80.72 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.53 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.5 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.42 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-92 Score=762.41 Aligned_cols=630 Identities=28% Similarity=0.517 Sum_probs=593.6
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChhHHh
Q 005969 2 PDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAFVGT 79 (667)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 79 (667)
+.|+..++|.+|.+|++.|++++|..+|+.|.+.|+.|+..+|..++. |... ..+.+.+++..+.+.+ ..++...++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHH
Confidence 467888999999999999999999999999999999999999999999 7776 8999999999999998 789999999
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHH
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEF 159 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 159 (667)
+|+.+|++.|+++.|.++|++|++||..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcC
Q 005969 160 GEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVF 239 (667)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 239 (667)
+.+++..+.+.|+.||..++|.|+.+|++.|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|...|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHh
Q 005969 240 PNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYA 319 (667)
Q Consensus 240 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 319 (667)
||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..||+.+||.+|.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHh
Q 005969 320 SKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTA 398 (667)
Q Consensus 320 ~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 398 (667)
+.|+.+ |+++|.+|.+.|+.||..||+.++. +|++.|++++|.++++.
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~-------------------------------a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLS-------------------------------ACACLGDLDVGVKLHEL 414 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH-------------------------------HHhccchHHHHHHHHHH
Confidence 999999 9999999999999999999985555 44555555555555544
Q ss_pred c---CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 005969 399 L---NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFV 475 (667)
Q Consensus 399 ~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 475 (667)
+ +..++...++.++..|++.|++++|.++|++|.++|..+|+++|.+|++.|+.++|+.+|++|.. +++||..||+
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~ 493 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLI 493 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHH
Confidence 4 44445555555555555555555555599999999999999999999999999999999999986 5999999999
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChH
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQ 555 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 555 (667)
.++.+|++.|+++.+.+++..+.+.|..+ +..++++|+++|+++|++++|.++|+.+ +||..+||+||.+|++.|+.+
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999877 9999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 556 RALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+.+|+.|+..+|++++++|++.|++++|.+++++|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999768899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 636 PFPPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 636 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
+++||..+|++|+.+|+.+|+.+.++.++++
T Consensus 652 ~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 652 PITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999999999999999999887754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-81 Score=680.48 Aligned_cols=572 Identities=27% Similarity=0.470 Sum_probs=539.9
Q ss_pred CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChhHH
Q 005969 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAFVG 78 (667)
Q Consensus 1 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 78 (667)
||+||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++. |... +...+.+++..+.+.| +.||..++
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~ 225 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVV 225 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchH
Confidence 6899999999999999999999999999999999999999999999999 7766 9999999999999999 99999999
Q ss_pred hhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchH
Q 005969 79 TALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLE 158 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 158 (667)
++|+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCc
Q 005969 159 FGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIV 238 (667)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 238 (667)
.+.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|..||..+||.+|.+|++.|++++|+++|++|.+.|+
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHH
Q 005969 239 FPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGY 318 (667)
Q Consensus 239 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 318 (667)
.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|+++|++.|++++|.++|++|.++|+.+|+.+|.+|
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhh----HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHH
Q 005969 319 ASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLL----QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDAL 393 (667)
Q Consensus 319 ~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 393 (667)
++.|+.+ |+.+|.+|.. +++||..||..++.+|+..+.+ +++..+.+.|+.++..++++++++|++.|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 9999999 9999999986 6999999999777777776666 66666677777777777777777777777777776
Q ss_pred HHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 005969 394 AFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYT 473 (667)
Q Consensus 394 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 473 (667)
+ +|+.+ .+|..+||++|.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 545 ~--------------------------------~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 545 N--------------------------------QFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred H--------------------------------HHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 6 88888 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHH-HhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-CCChhhHHHHHHHHHhC
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIK-KTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT-DRNVITWTALISALGLN 551 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~ 551 (667)
|+.++.+|++.|++++|.++|+.|. +.|+.| +..+|+.++++|++.|++++|.+++++|. +||..+|++|+.+|...
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999 556555 99999999999999999999999999996 89999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcch
Q 005969 552 GFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDH 611 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (667)
|+.+.+....+++.+. .|+ ...|..|...|+..|++++|.++.+.| +..|+++++..
T Consensus 671 ~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M-~~~g~~k~~g~ 728 (857)
T PLN03077 671 RHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTM-RENGLTVDPGC 728 (857)
T ss_pred CChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHH-HHcCCCCCCCc
Confidence 9999999999998884 665 567788889999999999999999999 55599988754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=566.62 Aligned_cols=536 Identities=15% Similarity=0.180 Sum_probs=454.1
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHH
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALL 82 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 82 (667)
.++...|..++..|++.|++++|+++|+.|...|+ ++++..+++.++
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv---------------------------------v~~~~v~~~~li 413 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL---------------------------------LDMDKIYHAKFF 413 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC---------------------------------CCchHHHHHHHH
Confidence 45566677777777777777777777777776654 456667778899
Q ss_pred HHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHH
Q 005969 83 GLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQ 162 (667)
Q Consensus 83 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 162 (667)
..|.+.|.+++|..+|+.|..|+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.+
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC----CCCchhHHHHHHHHHccCChhHHHHHHHHhHh--C
Q 005969 163 IHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE----IRDVVSWNTIIGALAESENFGKALELYLRMSV--D 236 (667)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~ 236 (667)
+|++|.+.|+.||..+|+.||.+|++.|++++|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.. .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998885 57888999999999999999999999999976 5
Q ss_pred CcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC----CCcccHH
Q 005969 237 IVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN----KNIVSWN 312 (667)
Q Consensus 237 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~ 312 (667)
|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999988888888865 6778888
Q ss_pred HHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHH
Q 005969 313 ALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISD 391 (667)
Q Consensus 313 ~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (667)
.+|.+|++.|+.+ |.+++.+|.+.|+.||..+|+ +++.+|++.|++++
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn-------------------------------sLI~ay~k~G~~ee 702 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS-------------------------------SLMGACSNAKNWKK 702 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-------------------------------HHHHHHHhCCCHHH
Confidence 8888888888888 888888888888888877775 77778888888888
Q ss_pred HHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 005969 392 ALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN 471 (667)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 471 (667)
|.++|++| .+.-..||..+|++||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 703 A~~lf~eM----------------------------~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 703 ALELYEDI----------------------------KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHHHHHH----------------------------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 88844431 11113699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhC
Q 005969 472 YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLN 551 (667)
Q Consensus 472 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 551 (667)
.||+.++.+|++.|+++.|.++++.|.+.|..| |..+|++++..|. +++++|.++.+.+...+. .......
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p-d~~tynsLIglc~--~~y~ka~~l~~~v~~f~~------g~~~~~n 825 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKP-NLVMCRCITGLCL--RRFEKACALGEPVVSFDS------GRPQIEN 825 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc------ccccccc
Confidence 999999999999999999999999999999877 9999999987654 245555555443331110 1111122
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHH
Q 005969 552 GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKI 631 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (667)
+..++|+.+|++|.+.|+.||..||+.++.++++.+....+..+++.|. ..+..|+..+|++|++++++. .++|..+
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 3456799999999999999999999999988889999999999999884 448889999999999998532 4689999
Q ss_pred HHhC---CCCCCHH
Q 005969 632 ITTM---PFPPNAL 642 (667)
Q Consensus 632 ~~~m---~~~p~~~ 642 (667)
+++| ++.|+..
T Consensus 903 ~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 903 LEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHcCCCCCcc
Confidence 9999 3666653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-66 Score=544.91 Aligned_cols=472 Identities=23% Similarity=0.414 Sum_probs=440.2
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHH
Q 005969 104 KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSE-VALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSL 182 (667)
Q Consensus 104 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (667)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 567799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHH
Q 005969 183 VNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGK 262 (667)
Q Consensus 183 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 262 (667)
+.+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCC
Q 005969 263 SIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPN 341 (667)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~ 341 (667)
+++..+.+.|+.||..++++|+++|++.|++++|.++|++|.++|+.+||++|.+|++.|+.+ |+++|.+|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc---CCCCCcchhHHHHHHHhhc
Q 005969 342 EFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL---NIPRAVVPANIIAGIYNRT 418 (667)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~ 418 (667)
..||+ .++.+|++.|++++|.+++..+ +.+++..+++.+++.|++.
T Consensus 325 ~~t~~-------------------------------~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 325 QFTFS-------------------------------IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHH-------------------------------HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 99997 6666677777777777777666 6667777777777777777
Q ss_pred CChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 005969 419 GQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIK 498 (667)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 498 (667)
|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus 374 G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 374 GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 77777777999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHH
Q 005969 499 KTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT-DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVAL 576 (667)
Q Consensus 499 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~ 576 (667)
+.....|+..+|+.++++|++.|++++|.+++++|. +|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y 531 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNY 531 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcch
Confidence 753344499999999999999999999999999997 79999999999999999999999999999975 5664 6799
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (667)
..|+..|++.|++++|.++++.| ++.|++..+
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m-~~~g~~k~~ 563 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETL-KRKGLSMHP 563 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH-HHcCCccCC
Confidence 99999999999999999999999 555876543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-66 Score=547.06 Aligned_cols=580 Identities=22% Similarity=0.340 Sum_probs=460.4
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCchhHhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChhHHhh
Q 005969 4 RNVVSFNSIISAYSRCGYVEDALRMFLYMINRG-FEPTQFTFGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAFVGTA 80 (667)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (667)
++..+|+.+|.+|.+.|++.+|+++|+.|...+ +.||..+|+.++. |... +.+.+.+++..+.+.| +.||..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 355699999999999999999999999999864 7899999999999 7766 9999999999999999 9999999999
Q ss_pred HHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHH
Q 005969 81 LLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFG 160 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 160 (667)
|+.+|++.|++++|.++|++|++||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCC
Q 005969 161 EQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240 (667)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 240 (667)
.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhc
Q 005969 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYAS 320 (667)
Q Consensus 241 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 320 (667)
|..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|++.|++++|.++|++|.++|+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc
Q 005969 321 KSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL 399 (667)
Q Consensus 321 ~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 399 (667)
.|+.+ |+++|++|.+.|+.||..||+ .++.+|.+.|.+++|.++|+.|
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~-------------------------------~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFL-------------------------------AVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHH-------------------------------HHHHHHhcCCcHHHHHHHHHHH
Confidence 99999 999999999999999999997 7778888889999999866655
Q ss_pred ----CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 005969 400 ----NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFV 475 (667)
Q Consensus 400 ----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 475 (667)
+.. |+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+
T Consensus 453 ~~~~g~~-------------------------------p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~ 498 (697)
T PLN03081 453 SENHRIK-------------------------------PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWA 498 (697)
T ss_pred HHhcCCC-------------------------------CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 233 45555555555555555555555555443 3455555555
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC-----hhhHHHH------
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN-----VITWTAL------ 544 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l------ 544 (667)
.++.+|...|+++.|..+++++.+. .|.+..+|..|++.|++.|++++|.++++.|.+.. ..+|..+
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~ 576 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS 576 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE
Confidence 5555555555555555555554432 23234455555555555555555555555554211 1111100
Q ss_pred -HHHHHhC----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHH---hHHhhCCCCCc-chhHHH
Q 005969 545 -ISALGLN----GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFER---MNRSYGVEPEM-DHYHCV 615 (667)
Q Consensus 545 -i~~~~~~----~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~-~~~~~l 615 (667)
+.+-..+ .-++...++..+|.+.|..||...... ...+-++-..+..+ +--.+|+--++ .+--.+
T Consensus 577 f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~------~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i 650 (697)
T PLN03081 577 FFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLP------DVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQI 650 (697)
T ss_pred EccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhc------cccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEE
Confidence 0000000 113456678889999999998543211 11111111111111 11112222111 111234
Q ss_pred HHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCh
Q 005969 616 VDLLVRYGHLKEAEKIITTMP----FPPNALIWRTFLEGCQRCRIA 657 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~l~~~~~~~~~~ 657 (667)
++-+--+|+-..|.+++.+.. +..|..-|+++-.+-+.+||.
T Consensus 651 ~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~ 696 (697)
T PLN03081 651 TQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDY 696 (697)
T ss_pred ecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccccccc
Confidence 555567889999999998883 556777788887777777763
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=534.35 Aligned_cols=494 Identities=17% Similarity=0.218 Sum_probs=445.3
Q ss_pred CcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHH
Q 005969 137 VALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGF-DYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIG 215 (667)
Q Consensus 137 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 215 (667)
..++...|..++..+++.|+++.|.++|+.|.+.|+ +++..+++.++..|.+.|..++|.++|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446677888889999999999999999999999885 5677788889999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 005969 216 ALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEG 295 (667)
Q Consensus 216 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (667)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC----CCcccHHHHHHHHhcCCChH-HHHHHHHHHH--cCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhc
Q 005969 296 AHLCFSEISN----KNIVSWNALILGYASKSSPT-SIFLLIELLQ--LGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMG 368 (667)
Q Consensus 296 a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 368 (667)
|.++|+.|.+ ||..+|+.+|.+|++.|+.+ |.+++.+|.. .|+.||..+|+
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyn---------------------- 583 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG---------------------- 583 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHH----------------------
Confidence 9999999864 88899999999999999999 9999999976 57788888775
Q ss_pred CcchhhhHHHHHHHHHhhCCHHHHHHHHHhc---CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC----CCCcchHHH
Q 005969 369 YENYEYVLGSLMTSYAKSGLISDALAFVTAL---NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE----RPDIVSWNI 441 (667)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ 441 (667)
+++.+|++.|++++|.++|+.| +.+|+..+|+.++.+|++.|++++|.++|++|. .||..+|++
T Consensus 584 ---------aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 584 ---------ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred ---------HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7888888888888888888888 677888888888888888899999998999887 489999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|..| +..+|+.|+.+|++.|
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999998766 9999999999999999
Q ss_pred ChHHHHHHHHhcC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----c-------
Q 005969 522 SIGSSVKIFNEMT----DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH----G------- 586 (667)
Q Consensus 522 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~------- 586 (667)
++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999997 599999999999999999999999999999999999999999999876542 1
Q ss_pred ------------CCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHH
Q 005969 587 ------------GLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP---FPPNALIWRTFLEGC 651 (667)
Q Consensus 587 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~l~~~~ 651 (667)
+..+.|..+|++|.+. |+.||..+|+.++.++++.+..+.+..+++.|. ..|+..+|++|+.+|
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 2246799999999655 999999999999999999999999999999995 667899999999998
Q ss_pred HhcCChhHHhhhhh
Q 005969 652 QRCRIAKYDTLNST 665 (667)
Q Consensus 652 ~~~~~~~~a~~~~~ 665 (667)
... .++|...++
T Consensus 893 ~~~--~~~A~~l~~ 904 (1060)
T PLN03218 893 GEY--DPRAFSLLE 904 (1060)
T ss_pred ccC--hHHHHHHHH
Confidence 432 245655443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=322.96 Aligned_cols=647 Identities=12% Similarity=-0.004 Sum_probs=430.6
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHH--
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVG-- 78 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 78 (667)
+++...|..+...+...|++++|...|++..+... .+..++..+.. +..++++.|...++.+.+.. +.+....
T Consensus 190 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 266 (899)
T TIGR02917 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKA--PNSPLAHYL 266 (899)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHH
Confidence 34445555556666666666666666666655321 12222222222 22335555555555554443 2222222
Q ss_pred --------------------------------hhHHHHhhccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChH
Q 005969 79 --------------------------------TALLGLYGRHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVE 123 (667)
Q Consensus 79 --------------------------------~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~ 123 (667)
..+...+...|++++|...|+...+ | +...+..+...+.+.|+++
T Consensus 267 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH
Confidence 2233334444555555555544332 1 2334444555555556666
Q ss_pred HHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC
Q 005969 124 DCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 124 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
+|+..++.+.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+...
T Consensus 347 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 347 EAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 6666665555432 2344455555555566666666666666655443 2234455555555666666666666655543
Q ss_pred C---CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHH
Q 005969 204 I---RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVG 280 (667)
Q Consensus 204 ~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 280 (667)
. .+......++..+.+.|++++|..+++++... .+++..++..+...+...|+.++|.+.++++.+... .+...+
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 502 (899)
T TIGR02917 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAA 502 (899)
T ss_pred hhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHH
Confidence 2 12234445556666677777777777766553 344556677777777777777777777777766542 244556
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhh
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQ 356 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 356 (667)
..+...+...|++++|.+.|+++.. .+...+..+...+.+.|+.+ |...+.++...+. .+...+..+...+...+
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCC
Confidence 6677777777888888777777654 34556667777777778877 8877777766432 23344444555555555
Q ss_pred hh----HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhc
Q 005969 357 LL----QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQ 430 (667)
Q Consensus 357 ~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 430 (667)
.. ..+..+.+ ..+.++..+..+...+.+.|++++|...|+.+ ..|.+...+..+..++...|++++|...+++
T Consensus 582 ~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 582 QLKKALAILNEAAD-AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred CHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54 33333332 23455677888888888888888888888887 4455666777888888888888888888887
Q ss_pred CCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch
Q 005969 431 LER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT 507 (667)
Q Consensus 431 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 507 (667)
+.+ .+..++..+...+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...++.+.+.+ | +.
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~-~~ 736 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--P-SS 736 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--C-Cc
Confidence 663 345677888888888889999998888888765 4566777788888888899999999998888765 3 44
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR 584 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 584 (667)
.++..+...+.+.|++++|.+.++.+.+ .+...+..+...|...|+.++|.+.|+++.+.. +++..+++.+...+.
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 6777788888999999999988888762 356688888888999999999999999998863 456778888999999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHhh
Q 005969 585 HGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP--FPPNALIWRTFLEGCQRCRIAKYDTL 662 (667)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a~~ 662 (667)
..|+ ++|+.+++++... .+-++.++..+..++.+.|++++|.++++++- .+.+..++..+..++...|+.+.|..
T Consensus 816 ~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred hcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999 8899999988544 34455667788899999999999999999983 33478999999999999999999988
Q ss_pred hhhc
Q 005969 663 NSTK 666 (667)
Q Consensus 663 ~~~~ 666 (667)
..++
T Consensus 893 ~~~~ 896 (899)
T TIGR02917 893 ELDK 896 (899)
T ss_pred HHHH
Confidence 7764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=315.34 Aligned_cols=647 Identities=11% Similarity=-0.015 Sum_probs=403.4
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhh
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTA 80 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (667)
+.+...+..++..+...|++++|..+++.+.+.. +++...+..+.. ...++.+.|...+++.++.+ +.+...+..
T Consensus 156 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~ 232 (899)
T TIGR02917 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR--PNNPAVLLA 232 (899)
T ss_pred CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHH
Confidence 4566789999999999999999999999998863 233344444433 44559999999999999876 778888899
Q ss_pred HHHHhhccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCC-hhhHHHHHHHhcccCc
Q 005969 81 LLGLYGRHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALT-ESSFVGVIHGLSNEQD 156 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~ 156 (667)
++..+...|++++|...++.+.+ | +...+......+...|++++|...|+.+.+.+ |+ ...+..+...+...|+
T Consensus 233 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~ 310 (899)
T TIGR02917 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGN 310 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCC
Confidence 99999999999999999988753 2 22233333344456677777777777766543 22 2223333444555666
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC---CCchhHHHHHHHHHccCChhHHHHHHHHh
Q 005969 157 LEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI---RDVVSWNTIIGALAESENFGKALELYLRM 233 (667)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 233 (667)
++.|...++.+.+.. +.+...+..+...+.+.|++++|...++.+.. .+...+..+...+.+.|++++|.++|+++
T Consensus 311 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 389 (899)
T TIGR02917 311 LEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA 389 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666655543 22344445555555555555555555554432 23344555555555555555555555555
Q ss_pred HhCCcCCChhhHHHHHH----------------------------------HhhccCChhHHHHHHHHHHHhcCCCCchH
Q 005969 234 SVDIVFPNQTTFVYVIN----------------------------------SCAGLQNSILGKSIHAKVIKNALECDVFV 279 (667)
Q Consensus 234 ~~~g~~p~~~t~~~ll~----------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 279 (667)
.+.. +.+...+..+.. .+.+.|+.++|..+++.+.+.. +.+..+
T Consensus 390 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 467 (899)
T TIGR02917 390 TELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASL 467 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHH
Confidence 4331 112223333333 3444444555555444444332 224445
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhh
Q 005969 280 GSALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAF 355 (667)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 355 (667)
+..+...+...|++++|.+.|+++.+ .+...+..+...+...|+.+ |...+.++.+.+. .+...+..+...+...
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHc
Confidence 55555556666666666666655433 22334444555555566666 6666665554321 1233333333333333
Q ss_pred hhh----HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHh
Q 005969 356 QLL----QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLS 429 (667)
Q Consensus 356 ~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 429 (667)
+.. ..+..+...+ +.+...+..+...+...|++++|.++++.+ ..|.+...+..+..++...|++++|...|+
T Consensus 547 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333 2222222221 223344556666777777777777777766 445556666777777777777777777777
Q ss_pred cCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc
Q 005969 430 QLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD 506 (667)
Q Consensus 430 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 506 (667)
.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|.++++.+.+.. |++
T Consensus 626 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~ 702 (899)
T TIGR02917 626 KLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKA 702 (899)
T ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCC
Confidence 6542 344556666777777777777777777776642 3345667777777777777777777777776664 335
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR 584 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 584 (667)
...+..+...+...|++++|.+.|+.+. .|+..++..+..++...|+.++|.+.++++.+.. +.+...+..+...|.
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL 781 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 6667777777777777777777777765 3555666677777777788888888877777752 345667777777777
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHhh
Q 005969 585 HGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-F-PPNALIWRTFLEGCQRCRIAKYDTL 662 (667)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~~~~~~~~~~~a~~ 662 (667)
..|++++|.++|+++... .++++.++..+...+...|+ .+|.+.+++.- . +-+..++..+...+...|+++.|..
T Consensus 782 ~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 788888888888877544 35566777777888887777 77887777762 2 3345666777777888888888877
Q ss_pred hhhc
Q 005969 663 NSTK 666 (667)
Q Consensus 663 ~~~~ 666 (667)
.+++
T Consensus 859 ~~~~ 862 (899)
T TIGR02917 859 LLRK 862 (899)
T ss_pred HHHH
Confidence 6654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-24 Score=235.69 Aligned_cols=595 Identities=11% Similarity=0.043 Sum_probs=347.8
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhH---------------hh-c---cCCccchhhHHHHH
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGG---------------LL-S---CDSLNPVEGAQLQA 63 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------ll-~---~~~~~~~~a~~~~~ 63 (667)
+.|+..+..++..+.+.|+.++|...+++..+. .|+...+.. +. . ...+++++|...++
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 344555555566666666666666666666654 233322210 10 0 22235566666666
Q ss_pred HHHHhCCCCCChhHHhhHH-HHhhccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCc-
Q 005969 64 SVLKNGLFCADAFVGTALL-GLYGRHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVA- 138 (667)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 138 (667)
.+++.+ +++......+. ......|+.++|++.|+++.. | +...+..+...+...|+.++|++.++++.+....
T Consensus 137 ~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 137 KLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 655443 33322111111 111223556666666655543 2 2334445555555556666666666555432100
Q ss_pred ---------------CChh---hHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhc
Q 005969 139 ---------------LTES---SFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFK 200 (667)
Q Consensus 139 ---------------~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 200 (667)
++.. .+...+..+-.....+.+...+.........|+.. .......+...|++++|+..|+
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 0000 01111111222222333333333333222222211 1123445556677777777666
Q ss_pred cCCC--C-CchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCC-ChhhHH---------H---HHHHhhccCChhHHHHH
Q 005969 201 DVEI--R-DVVSWNTIIGALAESENFGKALELYLRMSVDIVFP-NQTTFV---------Y---VINSCAGLQNSILGKSI 264 (667)
Q Consensus 201 ~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~---------~---ll~~~~~~~~~~~a~~~ 264 (667)
+... | +...+..+...+.+.|++++|+..|++..+..... ....+. . .-..+.+.|++++|...
T Consensus 294 ~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6542 2 44556666666677777777777776665532111 111111 1 11234566677777777
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCC
Q 005969 265 HAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN--K-NIVSWNALILGYASKSSPT-SIFLLIELLQLGYRP 340 (667)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~ 340 (667)
++++.+... .+...+..+..++...|++++|.+.|++..+ | +...+..+...+.. ++.+ |...+..+.....
T Consensus 374 ~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~-- 449 (1157)
T PRK11447 374 YQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ-QSPEKALAFIASLSASQR-- 449 (1157)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHH--
Confidence 776666532 2444555566666677777777777666554 2 22233334444432 3344 5555543222100
Q ss_pred CHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhc
Q 005969 341 NEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRT 418 (667)
Q Consensus 341 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~ 418 (667)
. ..... ... .....+..+...+...|++++|.+.|++. ..|.+...+..+..++.+.
T Consensus 450 ~--~~~~~-----------------~~~--l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 450 R--SIDDI-----------------ERS--LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred H--HHHHH-----------------HHH--hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 0 00000 000 01122345677888899999999999988 5555667778889999999
Q ss_pred CChhHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhccCC
Q 005969 419 GQYNETVKLLSQLER--P-DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNY---------TFVSLLSACSKLCN 486 (667)
Q Consensus 419 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~ 486 (667)
|++++|...++++.+ | +...+..+...+...++.++|...++.+......++.. .+..+...+...|+
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999998753 3 33444445555677899999999998865433222221 12344566788999
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHH
Q 005969 487 LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFRE 563 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~ 563 (667)
.++|..+++. .|+++..+..+...+.+.|+.++|...|+.+. .| +...+..++..|...|+.++|++.++.
T Consensus 589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998871 35577788889999999999999999999887 34 567888899999999999999999998
Q ss_pred HHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC----CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 564 MEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEP----EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 564 ~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
..+. .|+ ..++..+..++...|++++|.++++++.....-.| +...+..+...+...|+.++|.+.+++.
T Consensus 663 ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 663 LPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred Hhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8774 554 45667788888999999999999999855421112 1235666788889999999999998876
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-23 Score=232.85 Aligned_cols=607 Identities=9% Similarity=0.006 Sum_probs=357.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCc-hhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHH-----------
Q 005969 13 ISAYSRCGYVEDALRMFLYMINRGFEPTQ-FTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVG----------- 78 (667)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 78 (667)
+......++.+.|.+.++++... .|+. ..+..+.. ...++.++|.+.++++.+.. |.+....
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 33444566666666666666653 3333 22322222 33446666666666666655 3332221
Q ss_pred -----hhHHHHhhccCChhHHHHhhccCCC--CCchhH--HHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHH
Q 005969 79 -----TALLGLYGRHGCLDEVVSVFEDMPR--KSLVTW--NSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIH 149 (667)
Q Consensus 79 -----~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 149 (667)
..+...+.+.|++++|...|+.... |+.... ..........|+.++|++.++++.+.. +-+......+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 2223345566666666666666543 211111 011111123466666666666666543 223444555556
Q ss_pred HhcccCchHHHHHHHHHHHHhcCCCc--hHH-----------------HHHHHHHHHhcCChhHHHHhhccCCC--CCch
Q 005969 150 GLSNEQDLEFGEQIHGLVIKNGFDYE--LLV-----------------ANSLVNMYFQCAGIWSAEKMFKDVEI--RDVV 208 (667)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 208 (667)
.+...|+.++|...++.+.+...... ... +...+..+-.....+.|...+..... .|..
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 66666666666666666644221000 000 00011111111112223333322110 0111
Q ss_pred -hHHHHHHHHHccCChhHHHHHHHHhHhCCcCC-ChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCc-hHH-----
Q 005969 209 -SWNTIIGALAESENFGKALELYLRMSVDIVFP-NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDV-FVG----- 280 (667)
Q Consensus 209 -~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~----- 280 (667)
........+...|++++|+..|++.... .| +...+..+-..+.+.|+.++|...|++..+....... ..+
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 1112234455566666666666666553 23 4445555555566666666666666666655432211 111
Q ss_pred -------HHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHH
Q 005969 281 -------SALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVL 349 (667)
Q Consensus 281 -------~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l 349 (667)
......+.+.|++++|.+.|++... .+...+..+...+...|+.+ |.+.+++..+.. |+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~------- 418 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGN------- 418 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC-------
Confidence 1112345566666666666666544 22334445555566666666 666666655432 221
Q ss_pred HHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCC-----------CCcchhHHHHHHHhhc
Q 005969 350 RSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIP-----------RAVVPANIIAGIYNRT 418 (667)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~l~~~~~~~ 418 (667)
...+..+...+ ..++.++|..+++.+... .....+......+...
T Consensus 419 -----------------------~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 419 -----------------------TNAVRGLANLY-RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ 474 (1157)
T ss_pred -----------------------HHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 11122444455 346788898888766211 1122344566778889
Q ss_pred CChhHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 005969 419 GQYNETVKLLSQLER--P-DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHG 495 (667)
Q Consensus 419 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 495 (667)
|++++|++.|++..+ | +...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++
T Consensus 475 g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 475 GKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999988764 3 34556778888899999999999999988643 2234444444455677889999999888
Q ss_pred HHHHhCCCCCch---------hHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 496 LIKKTEIISSDT---------FVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 496 ~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
.+......+ +. ..+..+...+...|+.++|.++++. ...+...+..+...+.+.|+.++|++.|++..+
T Consensus 554 ~l~~~~~~~-~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 554 TLPRAQWNS-NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred hCCchhcCh-hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 764332111 11 1223456778889999999999983 223556677888999999999999999999998
Q ss_pred cCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CC----C-
Q 005969 567 LGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FP----P- 639 (667)
Q Consensus 567 ~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~----p- 639 (667)
. .| +...+..++..+...|++++|.+.++..... -+.+...+..+..++...|++++|.++++++. .. |
T Consensus 632 ~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 707 (1157)
T PRK11447 632 R--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPS 707 (1157)
T ss_pred h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcc
Confidence 5 55 5678899999999999999999999987433 23345567778889999999999999999983 21 2
Q ss_pred --CHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 640 --NALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 640 --~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
+...+..+...+...|+.+.|...+++
T Consensus 708 ~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 708 MESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 235667777888999999999887654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-20 Score=196.45 Aligned_cols=601 Identities=9% Similarity=-0.049 Sum_probs=298.8
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHH
Q 005969 4 RNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALL 82 (667)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 82 (667)
.+..++..|...|...|+.++|+..+++..+. .|+...|..++. + .+..+|..+++++.+.. |.+..++..+.
T Consensus 76 ~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i--~~~~kA~~~ye~l~~~~--P~n~~~~~~la 149 (987)
T PRK09782 76 DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI--PVEVKSVTTVEELLAQQ--KACDAVPTLRC 149 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh--ccChhHHHHHHHHHHhC--CCChhHHHHHH
Confidence 34555666666666666666666666666654 455555544444 4 45556666666666655 44444444444
Q ss_pred HH--------hhccCChhHHHHhhccCCC-CCchhHHH-HHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhc
Q 005969 83 GL--------YGRHGCLDEVVSVFEDMPR-KSLVTWNS-IVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLS 152 (667)
Q Consensus 83 ~~--------~~~~g~~~~a~~~~~~~~~-~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 152 (667)
.. |.+.+...++++ .+.... |+...... +.+.|...|++++|++++.++.+.+. .+..-...+-.++.
T Consensus 150 ~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~ 227 (987)
T PRK09782 150 RSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLL 227 (987)
T ss_pred HHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 44 555544444444 221111 12222222 35666666666666666666666542 22333444444444
Q ss_pred c-cCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC-----CCchhHHH--------------
Q 005969 153 N-EQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI-----RDVVSWNT-------------- 212 (667)
Q Consensus 153 ~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-------------- 212 (667)
. .++ +.+..++.. .+.-+..++..+...|.+.|+.++|.+.++++.. |+..+|--
T Consensus 228 q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~ 302 (987)
T PRK09782 228 AGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA 302 (987)
T ss_pred HhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence 4 244 444444331 2234566666666666666666666666666541 11111111
Q ss_pred ----------------HHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHH--hhccCChhHHHHHHHHHHHhcCC
Q 005969 213 ----------------IIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINS--CAGLQNSILGKSIHAKVIKNALE 274 (667)
Q Consensus 213 ----------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~ 274 (667)
.+..+.+.++++.+.++. ...|..... .++. ....+...++.+.+..|.+....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~ 374 (987)
T PRK09782 303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EERYAVSVATRNKAEALRLARLLYQQEPA 374 (987)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcCCC
Confidence 122233333333332221 112222211 1111 11223333444444444333111
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHhccCC--CCc----ccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHH
Q 005969 275 CDVFVGSALVDFYAKCDNLEGAHLCFSEISN--KNI----VSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSH 347 (667)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~ 347 (667)
+.....-+.-...+.|+.++|.++|+.... ++. ....-++..|.+.+... ..+...- |.+++..+-..
T Consensus 375 -~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~ 449 (987)
T PRK09782 375 -NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL----SKPLPLAEQRQ 449 (987)
T ss_pred -CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh----ccccccchhHH
Confidence 222222222334455666666666655443 111 11223344444443322 1111000 00111111111
Q ss_pred HHHHhhh-hhhhHHHHHHHHhcC-cc--hhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHHHHHhhcCChh
Q 005969 348 VLRSSLA-FQLLQLHCLIIRMGY-EN--YEYVLGSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANIIAGIYNRTGQYN 422 (667)
Q Consensus 348 ~l~~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 422 (667)
....... .......... .+. ++ +...+..+...+.. ++.++|...+... ...|+......+...+...|+++
T Consensus 450 ~~~~~~~~~~~~~~~~~a--l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRL--LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHhhhhhhhhhHHHHHHh--cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHH
Confidence 1110000 0000000011 111 12 34455555555554 6777777755554 33333333333344445677777
Q ss_pred HHHHHHhcCCC--CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 423 ETVKLLSQLER--PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 423 ~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
+|...|+++.. |+...+..+...+.+.|++++|...+++..+.. +++...+..+.......|+.++|...++...+.
T Consensus 527 eAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 527 TALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 77777766542 333445555566667777777777777776643 222222323333344457777777777777765
Q ss_pred CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHH
Q 005969 501 EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVAL 576 (667)
Q Consensus 501 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~ 576 (667)
. | +...+..+...+.+.|+.++|...+++.. .| +...++.+...+...|+.++|+..+++..+. .| +...+
T Consensus 606 ~--P-~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~ 680 (987)
T PRK09782 606 A--P-SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALI 680 (987)
T ss_pred C--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 4 3 46667777777777777777777777666 23 3446666666777777777777777777763 44 34566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRSYGVEPEM-DHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNAL 642 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~ 642 (667)
..+..++...|++++|...+++.... .|+. .+.........+..+++.|.+-+++- .+.|+..
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l---~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDD---IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 77777777777777777777766432 3433 55556666666666777777766655 3555544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-20 Score=196.26 Aligned_cols=611 Identities=11% Similarity=-0.000 Sum_probs=386.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCch-hHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHH
Q 005969 18 RCGYVEDALRMFLYMINRGFEPTQF-TFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEV 94 (667)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 94 (667)
..|++++|+..|++..+. .|+.. .+..+.. ...++.++|+..+++..+.. |.|...+..+ ..+ ++.++|
T Consensus 56 ~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L-a~i---~~~~kA 127 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSL-AAI---PVEVKS 127 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH-HHh---ccChhH
Confidence 349999999999999985 55554 3433333 44458999999999999876 4444444444 333 888899
Q ss_pred HHhhccCCC--C-CchhHHHHHHH--------HHhCCChHHHHHHHHHHHHCCCcCChhhHHHH-HHHhcccCchHHHHH
Q 005969 95 VSVFEDMPR--K-SLVTWNSIVSI--------FGKHGFVEDCMFLFCELVRSEVALTESSFVGV-IHGLSNEQDLEFGEQ 162 (667)
Q Consensus 95 ~~~~~~~~~--~-~~~~~~~li~~--------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~ 162 (667)
..+++++.. | +...+..+... |.+. ++|.+.++ .......|+....... .+.|...++++.|..
T Consensus 128 ~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 128 VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999864 4 34455555544 5555 55555554 3333333445555555 888889999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHh-cCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcC-C
Q 005969 163 IHGLVIKNGFDYELLVANSLVNMYFQ-CAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVF-P 240 (667)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p 240 (667)
++..+.+.+. .+......|..+|.. .++ +.+..+++...+.+...+..+...+.+.|+.++|.+++.++...-.. |
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 9999999873 345556677778887 466 88888877655567888889999999999999999999998654332 5
Q ss_pred ChhhHHHHHHHhhccCChh-HHHHHHHHHHHhcCCCC-chHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHH
Q 005969 241 NQTTFVYVINSCAGLQNSI-LGKSIHAKVIKNALECD-VFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGY 318 (667)
Q Consensus 241 ~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 318 (667)
...++..++.- .+... .+..-+.. ...++ ....-.++..+.+.++++.+.++.. ....+. . ..+...
T Consensus 282 ~~~~~~~~l~r---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~ 350 (987)
T PRK09782 282 QEKSWLYLLSK---YSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYA 350 (987)
T ss_pred ccHHHHHHHHh---ccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHh
Confidence 66555555433 33221 11111110 00111 1112234777888899987777743 332232 1 233322
Q ss_pred h--cCCChH-HHHHHHHHHHcC-CCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcC------cchhhhHHHHHHHHHhhCC
Q 005969 319 A--SKSSPT-SIFLLIELLQLG-YRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGY------ENYEYVLGSLMTSYAKSGL 388 (667)
Q Consensus 319 ~--~~~~~~-a~~~~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~ 388 (667)
. ..+... +...+..|.+.. -.+..-.-.+.+ ....+..+....+....+ .++......++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ--LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 2 223333 666666665541 122211111111 112222222222222222 2244455678888888887
Q ss_pred ---HHHHHHHHH------------hc---------------CCCC--CcchhHHHHHHHhhcCChhHHHHHHhcCCC--C
Q 005969 389 ---ISDALAFVT------------AL---------------NIPR--AVVPANIIAGIYNRTGQYNETVKLLSQLER--P 434 (667)
Q Consensus 389 ---~~~a~~~~~------------~~---------------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 434 (667)
..++..+.. .. ..|+ +...+..+..++.. ++.++|...+.+... |
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P 507 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP 507 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC
Confidence 445544411 11 1233 44555666666665 788888886666553 4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.+.|...++...+.. |+....+..+.
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La 583 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLH 583 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHH
Confidence 4333222334445788899999888887553 4555556666777788888888888888887764 33444444444
Q ss_pred HHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVRE 591 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~ 591 (667)
....+.|++++|...+++.. .|+...|..+...+.+.|+.++|+..+++.... .|+ ...++.+..++...|++++
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 45556688999998888877 477778888888888899999999999888885 564 5567777778888899999
Q ss_pred HHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHhhhh
Q 005969 592 GMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNA-LIWRTFLEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~ 664 (667)
|+..+++..+. .+-+...+..+..++...|++++|.+.+++. ...|+. .+.........+..+++.+-...
T Consensus 662 Ai~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 662 SREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 99988888544 3445667888888888899999999888887 355653 55555556666666666665544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-17 Score=163.09 Aligned_cols=622 Identities=11% Similarity=0.053 Sum_probs=410.9
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCchhHhHhhccCCc----------------cchhhHHHHHHH
Q 005969 6 VVSFNSIISAYSRCGYVEDALRMFLYMINRGF----EPTQFTFGGLLSCDSL----------------NPVEGAQLQASV 65 (667)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~----------------~~~~a~~~~~~~ 65 (667)
..+|..+...|.+.|+.++.+.+++.-..... .++...+..+-.++.. ....|..+|...
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 45788999999999999999999998772211 1111111111000000 122333333333
Q ss_pred HHhCCCCCChhHHhhHHHHhhccCC--hhHHHHhhccCCCCCchh-HHHHHHH--HHhCCChHHHHHHHHHHHHCC--Cc
Q 005969 66 LKNGLFCADAFVGTALLGLYGRHGC--LDEVVSVFEDMPRKSLVT-WNSIVSI--FGKHGFVEDCMFLFCELVRSE--VA 138 (667)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~-~~~li~~--~~~~~~~~~a~~~~~~m~~~~--~~ 138 (667)
-+-....+...++.. ..|...|. ++.|...|..+.+.+..- ...+..+ ....|++..|+.+|....... .+
T Consensus 121 ~ki~m~~~~~l~~~~--~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQR--GFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HHhhccCcchhhhhh--hhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 222211111111111 22223333 478888888776533322 2223333 345689999999999976532 33
Q ss_pred CChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC---hhHHHHhhccCC---CCCchhHHH
Q 005969 139 LTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAG---IWSAEKMFKDVE---IRDVVSWNT 212 (667)
Q Consensus 139 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~---~~~~~~~~~ 212 (667)
||+. ..+-.++.+.|+.+.|...|....+.+. .++.++-.|...-....+ +..+...+...- ..|++..+.
T Consensus 199 aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~ 275 (1018)
T KOG2002|consen 199 ADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNH 275 (1018)
T ss_pred CCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHH
Confidence 4432 2333556688999999999999887653 233333333322223333 333444443332 357888899
Q ss_pred HHHHHHccCChhHHHHHHHHhHhCCcC--CChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 005969 213 IIGALAESENFGKALELYLRMSVDIVF--PNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKC 290 (667)
Q Consensus 213 li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (667)
|...|.-.|++..++.+...+...... .-...|-.+-+++-..|+++.|...|-+..+.........+.-|...|.+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 999999999999999999888765311 123446677888888999999999998887765443344556788999999
Q ss_pred CChHHHHHHHhccCC--CC-cccHHHHHHHHhcCC----ChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhh---h-
Q 005969 291 DNLEGAHLCFSEISN--KN-IVSWNALILGYASKS----SPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQL---L- 358 (667)
Q Consensus 291 g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~----~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~---~- 358 (667)
|+++.+...|+.+.. || ..+...+-..|...+ ..+ |..++.+..+.- .-|...|..+-..+..... +
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~ 434 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLD 434 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHH
Confidence 999999999999876 33 233333444444443 223 444444433322 2233334333333222211 1
Q ss_pred ---HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CC-----C------CCcchhHHHHHHHhhcCChhH
Q 005969 359 ---QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NI-----P------RAVVPANIIAGIYNRTGQYNE 423 (667)
Q Consensus 359 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-----~------~~~~~~~~l~~~~~~~~~~~~ 423 (667)
.....+...+..+.+.+.|.+...+...|++.+|...|... +. . +....--.+..++-..++.+.
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~ 514 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV 514 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH
Confidence 44456667777799999999999999999999999999887 11 1 122233456677778889999
Q ss_pred HHHHHhcCCCCCcch---HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 424 TVKLLSQLERPDIVS---WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 424 a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
|.+++..+.+..+.- |--+.......++..+|..++++..... .-++..+..+-..+.+...+..|..-|..+.+.
T Consensus 515 A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 515 AEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 999999988533322 2222222223578889999999887643 445555555666788888888888877777666
Q ss_pred CCCCCchhHHhHHHHHHHh------------cCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 501 EIISSDTFVCNMLIDMYGK------------CGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 501 ~~~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 565 (667)
-...+|+.+.-+|.+.|.+ .+..++|+++|..+.+ .|...-|.+.-.++..|++.+|..+|.+..
T Consensus 594 ~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVr 673 (1018)
T KOG2002|consen 594 TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVR 673 (1018)
T ss_pred hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHH
Confidence 4444577777777776653 2456789999987774 366777888889999999999999999999
Q ss_pred HcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 566 FLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 566 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+.. .-...+|-.+..+|...|++..|.++|+...+++...-+..+...|.+++.++|.+.+|.+.+...
T Consensus 674 Ea~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 674 EAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 974 345668888999999999999999999999899888888899999999999999999999987766
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-17 Score=154.03 Aligned_cols=436 Identities=11% Similarity=0.094 Sum_probs=294.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 005969 109 WNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQ 188 (667)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (667)
-..|..-.-+.|++.+|++.-...-+.+ +.+......+-..+.+..+.+...+--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445555567778888777665544332 1122222222333444444444333322222222 2345667777777777
Q ss_pred cCChhHHHHhhccCCC---CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHH-hhccCChhHHHHH
Q 005969 189 CAGIWSAEKMFKDVEI---RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINS-CAGLQNSILGKSI 264 (667)
Q Consensus 189 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~ 264 (667)
.|++++|...++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+.. +...|++.+|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 7777777777776653 2455677777777777777777777766654 35665555444444 2335666666666
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCHhh
Q 005969 265 HAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFT 344 (667)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 344 (667)
+.+..+.... -...|..|...+-.+|++..|++.|++...-|+.-.. .
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d-------------------------------A 254 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD-------------------------------A 254 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH-------------------------------H
Confidence 6665554321 2334555555566666666666666555442221111 1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChh
Q 005969 345 FSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYN 422 (667)
Q Consensus 345 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 422 (667)
|-.|...|...+.+++|...|.+. ..|.....+..+.-+|-.+|..+
T Consensus 255 -------------------------------YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 255 -------------------------------YINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred -------------------------------HhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence 114556666777777777777766 55666777777777888888888
Q ss_pred HHHHHHhcCCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHH
Q 005969 423 ETVKLLSQLER--PD-IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIK 498 (667)
Q Consensus 423 ~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 498 (667)
-|+..+++..+ |+ ...|+.|..++-..|++.+|.+.|++... +.|+ ..+.+.|...+...|..+.|..++....
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 88888887764 33 35789999999999999999999998887 3454 4578888999999999999999999887
Q ss_pred HhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-Hh
Q 005969 499 KTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN-VITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RV 574 (667)
Q Consensus 499 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~ 574 (667)
+-. |.-...++.|...|-..|+.++|...+++.. +|+ ...|+.+...|-..|+.+.|+..+.+.+. +.|. ..
T Consensus 382 ~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~Ae 457 (966)
T KOG4626|consen 382 EVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAE 457 (966)
T ss_pred hhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHH
Confidence 764 4356788899999999999999999999887 454 35888899999999999999999999888 5676 55
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHh
Q 005969 575 ALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM-DHYHCVVDLLV 620 (667)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 620 (667)
.++.|...|-.+|++.+|+.-++... .++||. ..|..++.++.
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aL---klkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTAL---KLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHH---ccCCCCchhhhHHHHHHH
Confidence 88889999999999999999998774 356664 56677766654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-16 Score=141.93 Aligned_cols=335 Identities=13% Similarity=0.111 Sum_probs=226.8
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccC--chHHH-HHHHHHHHHhcCCCchHHHHHH
Q 005969 106 LVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQ--DLEFG-EQIHGLVIKNGFDYELLVANSL 182 (667)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a-~~~~~~~~~~~~~~~~~~~~~l 182 (667)
+.+-|.|+. ....|.+.++.-+|+.|...|+..++..-..|++.-+-.+ ++--+ ++.|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 345566655 4567899999999999999999988887777665544332 22222 2333344444422 22222
Q ss_pred HHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHH
Q 005969 183 VNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGK 262 (667)
Q Consensus 183 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 262 (667)
+.|++.+ ++-+...++..+|.++|.++|+--..+.|.++|++-.....+.+..+||.+|.+-+-..+ .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 3344433 444444467789999999999999999999999999999899999999999988543333 7
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCH
Q 005969 263 SIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNE 342 (667)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~~~ 342 (667)
.++.+|....+.||..++|+++.+..+.|+++.|.+- +++++.+|++-|+.|..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a--------------------------alqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA--------------------------ALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH--------------------------HHHHHHHHHHhCCCcch
Confidence 8999999999999999999999999999999887653 45677788888888888
Q ss_pred hhHHHHHHHhhhhhhh---------HHHHHHHHhcCc----chhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhH
Q 005969 343 FTFSHVLRSSLAFQLL---------QLHCLIIRMGYE----NYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPAN 409 (667)
Q Consensus 343 ~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 409 (667)
.+|..+++.+.+.++. ++...+.-..++ .+...|...|..|.+..+.+-|.++-.-+..
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t-------- 384 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT-------- 384 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc--------
Confidence 8887777766655544 111222112222 2445566777777777777777764432200
Q ss_pred HHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhh
Q 005969 410 IIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLAL 489 (667)
Q Consensus 410 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 489 (667)
..+++..-.. .....-|..+....|.....+.-..+|+.|+-.-+-|+..+...++++....+.++-
T Consensus 385 --------g~N~~~ig~~-----~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ 451 (625)
T KOG4422|consen 385 --------GDNWKFIGPD-----QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEV 451 (625)
T ss_pred --------CCchhhcChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchh
Confidence 0000000000 011223455666677777777888888888777677888888888888888888888
Q ss_pred HHHHHHHHHHhCCCC
Q 005969 490 GSSLHGLIKKTEIIS 504 (667)
Q Consensus 490 a~~~~~~~~~~~~~~ 504 (667)
..++|..+...|...
T Consensus 452 ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 452 IPRIWKDSKEYGHTF 466 (625)
T ss_pred HHHHHHHHHHhhhhh
Confidence 888888877776433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=171.32 Aligned_cols=289 Identities=15% Similarity=0.124 Sum_probs=229.1
Q ss_pred cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCC-CC------chhHHHHHHHHHhCCCh
Q 005969 50 CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR-KS------LVTWNSIVSIFGKHGFV 122 (667)
Q Consensus 50 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~------~~~~~~li~~~~~~~~~ 122 (667)
...++++.|...++++.+.+ +.+..++..+...+.+.|++++|..+++.+.. ++ ...+..+...|...|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 33346666777777776655 55666788888889999999999999888764 22 24577888889999999
Q ss_pred HHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHhcCChhHHHHh
Q 005969 123 EDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYE----LLVANSLVNMYFQCAGIWSAEKM 198 (667)
Q Consensus 123 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 198 (667)
++|.++|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999998753 35677888899999999999999999999988664332 22456677788899999999999
Q ss_pred hccCCC--C-CchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCC
Q 005969 199 FKDVEI--R-DVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALEC 275 (667)
Q Consensus 199 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 275 (667)
|+++.+ | +...+..+...+.+.|++++|.++|+++...+......++..+..++...|+.++|...++.+.+.. |
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 988753 2 3557777888999999999999999999876433334667888889999999999999999988874 5
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHhccCC--CCcccHHHHHHHHhc---CCChH-HHHHHHHHHHcCCCCCHh
Q 005969 276 DVFVGSALVDFYAKCDNLEGAHLCFSEISN--KNIVSWNALILGYAS---KSSPT-SIFLLIELLQLGYRPNEF 343 (667)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~---~~~~~-a~~~~~~m~~~~~~~~~~ 343 (667)
+...+..+...+.+.|++++|.++++++.+ |+...++.++..+.. .|+.+ ++.++++|.+.++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 556668899999999999999999988765 777888888877664 45777 999999999988888776
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-16 Score=142.08 Aligned_cols=309 Identities=15% Similarity=0.119 Sum_probs=205.4
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc--cCCc--c-chhhHHHHHHHHHhCCCCCChhHHhh
Q 005969 6 VVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS--CDSL--N-PVEGAQLQASVLKNGLFCADAFVGTA 80 (667)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~--~-~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (667)
+.+=|.|+. ...+|.++++.-+|+.|.+.|+..+...-..++. |.-. + +-.-.+.|-.+...| .-+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW-- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc--
Confidence 334455444 4567999999999999999998888877766666 3332 3 322333444444444 2222322
Q ss_pred HHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHH
Q 005969 81 LLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFG 160 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 160 (667)
+.|.+.+ ++-+...++..+|..||.++|+-...+.|.+++++..+...+.+..+||.+|.+-.-.. .
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c
Confidence 2344433 44344445667899999999999999999999999998888999999999987765332 2
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCC
Q 005969 161 EQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240 (667)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 240 (667)
.+++.+|......||..++|+++....+.|+++.|.+ .|++++.+|++-|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCc
Confidence 7889999999999888888888888888887776533 3566677777777777
Q ss_pred ChhhHHHHHHHhhccCChhH-HHHHHHHHHHh----cCCC----CchHHHHHHHHHHhcCChHHHHHHHhccCC------
Q 005969 241 NQTTFVYVINSCAGLQNSIL-GKSIHAKVIKN----ALEC----DVFVGSALVDFYAKCDNLEGAHLCFSEISN------ 305 (667)
Q Consensus 241 ~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------ 305 (667)
...+|..+|..+++.++..+ +..++.++... .++| |...|..-+..|.+..+.+-|.++-.-...
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 77777777777776666543 33333333321 1222 444556666666677777666665544332
Q ss_pred --CC---cccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhH
Q 005969 306 --KN---IVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQ 359 (667)
Q Consensus 306 --~~---~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (667)
++ ...|..+....++....+ -+.++..|.-.-+-|...+...++++....+.++
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e 450 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLE 450 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcch
Confidence 11 123455556666666667 7777777777777777777777777766666663
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-17 Score=156.69 Aligned_cols=432 Identities=15% Similarity=0.180 Sum_probs=304.9
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---CCCchhHHHHHHHHHccC
Q 005969 145 VGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSWNTIIGALAESE 221 (667)
Q Consensus 145 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~ 221 (667)
..|.....+.|++++|++--..+-..+ +.+....-.+-.++....+.++....-.... ..-..+|+.+...+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 334445556677777776655544433 2222223333344444444444322211111 123456777777777777
Q ss_pred ChhHHHHHHHHhHhCCcCC-ChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchH-HHHHHHHHHhcCChHHHHHH
Q 005969 222 NFGKALELYLRMSVDIVFP-NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFV-GSALVDFYAKCDNLEGAHLC 299 (667)
Q Consensus 222 ~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~ 299 (667)
++++|+.+|+.+.+. +| ....|..+..++...|+.+.|.+.|.+..+.. |+..- ..-+...+...|++.+|...
T Consensus 131 ~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 777777777777764 33 34456666666677777777777776666543 32222 22233333445666666655
Q ss_pred HhccCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHH
Q 005969 300 FSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSL 379 (667)
Q Consensus 300 ~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (667)
+.+..+.+ | +| ...|+.|
T Consensus 207 YlkAi~~q--------------------------------p---~f---------------------------AiawsnL 224 (966)
T KOG4626|consen 207 YLKAIETQ--------------------------------P---CF---------------------------AIAWSNL 224 (966)
T ss_pred HHHHHhhC--------------------------------C---ce---------------------------eeeehhc
Confidence 54433211 1 00 0112245
Q ss_pred HHHHHhhCCHHHHHHHHHhc-CC-CCCcchhHHHHHHHhhcCChhHHHHHHhcCC--CC-CcchHHHHHHHHHHcCChhH
Q 005969 380 MTSYAKSGLISDALAFVTAL-NI-PRAVVPANIIAGIYNRTGQYNETVKLLSQLE--RP-DIVSWNIVIAACAHNGDYKE 454 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~ 454 (667)
...+...|+...|++.|++. .. |.-...|-.+..+|...+.++.|...+.+.. +| ....+..+...|-..|.++-
T Consensus 225 g~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 225 GCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred chHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHH
Confidence 55566778888888888777 43 4445677888888999999999998888765 34 34667778888889999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhc
Q 005969 455 VLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEM 533 (667)
Q Consensus 455 A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 533 (667)
|+..|++..+ +.|+ ...|+.|..++-..|++.+|.+.+.+..... |.-....+.|...|...|.+++|.++|...
T Consensus 305 AI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 305 AIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999999998 5676 4689999999999999999999999999886 446788999999999999999999999988
Q ss_pred CC--CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc
Q 005969 534 TD--RN-VITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 534 ~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (667)
.+ |. ...++.|...|-++|++++|+..|++..+ ++|+ ...|+.+...|-..|+.+.|.+.+.+.+ .+.|+.
T Consensus 381 l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---~~nPt~ 455 (966)
T KOG4626|consen 381 LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI---QINPTF 455 (966)
T ss_pred HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH---hcCcHH
Confidence 75 33 34789999999999999999999999998 7898 4599999999999999999999999874 345654
Q ss_pred -chhHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 005969 610 -DHYHCVVDLLVRYGHLKEAEKIITTM-PFPPN-ALIWRTFLEGCQ 652 (667)
Q Consensus 610 -~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~ 652 (667)
+.++.|..+|..+|+..+|.+-+++. +++|| +..|..++.+..
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 67889999999999999999999887 57777 456666665543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=164.73 Aligned_cols=228 Identities=16% Similarity=0.110 Sum_probs=116.8
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CCc------chHHHHHHHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PDI------VSWNIVIAACA 447 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~------~~~~~li~~~~ 447 (667)
.+...|.+.|++++|...|+.+ ..+.+...+..++.++.+.|++++|.+.++.+.+ |+. ..+..+...+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 4555556666666666655544 1222233334444444444444444444444432 110 12333444555
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
..|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+... ...+++.++.+|...|++++|.
T Consensus 192 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHHHHHHHHHHHHHcCCHHHHH
Confidence 5666666666666665532 2223345555555666666666666666655543111 1334555556666666666666
Q ss_pred HHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc---cCCHHHHHHHHHHhHHh
Q 005969 528 KIFNEMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH---GGLVREGMELFERMNRS 602 (667)
Q Consensus 528 ~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~ 602 (667)
+.++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++++.++
T Consensus 270 ~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 270 EFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 6666554 344444555556666666666666666665553 4555555555555443 33556666666666433
Q ss_pred hCCCCCcc
Q 005969 603 YGVEPEMD 610 (667)
Q Consensus 603 ~~~~~~~~ 610 (667)
++.|++.
T Consensus 348 -~~~~~p~ 354 (389)
T PRK11788 348 -QLKRKPR 354 (389)
T ss_pred -HHhCCCC
Confidence 4455544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-15 Score=147.80 Aligned_cols=253 Identities=10% Similarity=0.017 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHCCCCCCchhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccC
Q 005969 24 DALRMFLYMINRGFEPTQFTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDM 101 (667)
Q Consensus 24 ~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 101 (667)
....+|-.+...|+.|+..||.+++. |..++.+-|- +|.-|.-.. .+.+...++.++.+....|+.+.+.
T Consensus 8 ~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 8 FPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred CcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC------
Confidence 34567888899999999999999998 8788888888 888888777 8888899999999998888887765
Q ss_pred CCCCchhHHHHHHHHHhCCChHHHHHHHHH-HH-------HCCCcCChhhHHHHHHHh--------------cccCchHH
Q 005969 102 PRKSLVTWNSIVSIFGKHGFVEDCMFLFCE-LV-------RSEVALTESSFVGVIHGL--------------SNEQDLEF 159 (667)
Q Consensus 102 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~-------~~~~~~~~~~~~~li~~~--------------~~~~~~~~ 159 (667)
+|...+|..|..+|.+.|+... ++..++ |. ..|+..-..-|-..++++ ...|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6888899999999999999875 222222 22 233322222222222222 22233333
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHh-cCChhHHHHhhccCC-CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCC
Q 005969 160 GEQIHGLVIKNGFDYELLVANSLVNMYFQ-CAGIWSAEKMFKDVE-IRDVVSWNTIIGALAESENFGKALELYLRMSVDI 237 (667)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 237 (667)
+.+++..+......-...+ .++-... ...+++-..+.+... .++..+|..++..-.-+|+.+.|..++.+|++.|
T Consensus 158 llkll~~~Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHhhCCcccccchHHH---HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 3333322211110000000 1111111 122344444434333 3889999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 005969 238 VFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDN 292 (667)
Q Consensus 238 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 292 (667)
++.+.+-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+.+.|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999988888876 78888899999999999999999999888777777554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-15 Score=156.43 Aligned_cols=414 Identities=12% Similarity=-0.009 Sum_probs=228.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 005969 108 TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYF 187 (667)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (667)
.+......+.+.|++++|++.|++.++ ..|+...|..+..++...|++++|...++..++.+ +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344566778888999999999988876 44777778888888888888888888888877654 224556666666666
Q ss_pred hcCChhHHHHhhccCCCCC---chhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHH
Q 005969 188 QCAGIWSAEKMFKDVEIRD---VVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSI 264 (667)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 264 (667)
..|++++|...|......+ ......++..+.. ..+.........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~----------------------------- 252 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILE----------------------------- 252 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHh-----------------------------
Confidence 6666666665554332111 0111111111110 011111111111
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCc---ccHHHHHHH---HhcCCChH-HHHHHHHHHHcC
Q 005969 265 HAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNI---VSWNALILG---YASKSSPT-SIFLLIELLQLG 337 (667)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~---~~~~~~~~-a~~~~~~m~~~~ 337 (667)
.. +++...+..+. .+...........-+....+.+. ..+..+... ....+.++ |...+.+....+
T Consensus 253 ------~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 253 ------TK-PENLPSVTFVG-NYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred ------cC-CCCCCCHHHHH-HHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 10 00111111111 11111111111111111111000 001111000 11234555 666666666543
Q ss_pred -CCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHH
Q 005969 338 -YRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGI 414 (667)
Q Consensus 338 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~ 414 (667)
..|+.. ..+..+...+...|++++|+..++.. ..|.....+..+..+
T Consensus 325 ~~~~~~a------------------------------~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~ 374 (615)
T TIGR00990 325 KLGEKEA------------------------------IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374 (615)
T ss_pred CCChhhH------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 122211 12235666777888999998888876 334445566667777
Q ss_pred HhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHH
Q 005969 415 YNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGS 491 (667)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 491 (667)
+...|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|+.+.|.
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777777776542 334566666777777777777777777776642 223455666666677777777777
Q ss_pred HHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--CCh-h-------hHHHHHHHHHhCCChHHHHHHH
Q 005969 492 SLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RNV-I-------TWTALISALGLNGFAQRALEKF 561 (667)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~-------~~~~li~~~~~~~~~~~A~~~~ 561 (667)
..++...+.. |.++..++.+...+...|++++|.+.|+...+ |+. . .++.....+...|++++|.+++
T Consensus 454 ~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 454 ATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 7777776653 43566777777777777777777777776552 211 1 1111122233356777777777
Q ss_pred HHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 562 REMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 562 ~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
++.... .|+ ...+..+...+...|++++|.++|++..
T Consensus 532 ~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 532 EKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 776664 343 3456667777777777777777777663
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-15 Score=153.97 Aligned_cols=243 Identities=17% Similarity=0.052 Sum_probs=194.3
Q ss_pred hhCCHHHHHHHHHhcC-----CCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CC-cchHHHHHHHHHHcCChhHHH
Q 005969 385 KSGLISDALAFVTALN-----IPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PD-IVSWNIVIAACAHNGDYKEVL 456 (667)
Q Consensus 385 ~~~~~~~a~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~ 456 (667)
..+++++|.+.|+... .+.....+..+...+...|++++|...+++..+ |+ ...|..+...+...|++++|.
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 3578899999998872 233455677788888999999999999998764 33 346777888889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-
Q 005969 457 ELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD- 535 (667)
Q Consensus 457 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 535 (667)
..|++..+.. +.+...+..+...+...|+++.|...+++..+.. |.+...+..+...+.+.|++++|...|++..+
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998753 3456788889999999999999999999998875 54677888899999999999999999998763
Q ss_pred -C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--Hh------HHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 536 -R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD--RV------ALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 536 -~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
| +...++.+...+...|++++|++.|++.... .|+ .. .++.....+...|++++|.+++++....
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--- 537 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--- 537 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---
Confidence 4 5678888999999999999999999999884 332 11 1122222334479999999999987443
Q ss_pred CCCc-chhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 606 EPEM-DHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 606 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.|+. ..+..+..++.+.|++++|.+.|++.
T Consensus 538 ~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 538 DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3443 46888999999999999999999887
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-14 Score=140.14 Aligned_cols=223 Identities=12% Similarity=0.108 Sum_probs=163.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc-CCCCC-cchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCCh
Q 005969 378 SLMTSYAKSGLISDALAFVTAL-NIPRA-VVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDY 452 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 452 (667)
.+...+-..++.+.|.+.|..+ ...|+ ...|.-++-.....+...+|...+..... .++..+..+...+.+...+
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 3445566677888888988887 33333 33444444333344677888888887663 5566666667688888888
Q ss_pred hHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc------------cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh
Q 005969 453 KEVLELFKYMRAAR-IYPDNYTFVSLLSACSK------------LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK 519 (667)
Q Consensus 453 ~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (667)
..|.+-|....+.- ..+|..+...|.+.|.+ .+..++|+++|.++.+.. |.+...-|-+.-.++.
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAE 658 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhh
Confidence 88888777665432 23666666666665533 234577888888888775 5578888888888999
Q ss_pred cCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHhccCCHHHHHHH
Q 005969 520 CGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGF-KPDRVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 520 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
.|++.+|..+|..+.+ .+..+|-.+.++|...|++..|+++|+...+.-. ..+....+.|.+++.+.|++.+|.+.
T Consensus 659 kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999998885 3557888999999999999999999998776533 33566888999999999999999998
Q ss_pred HHHhHHh
Q 005969 596 FERMNRS 602 (667)
Q Consensus 596 ~~~~~~~ 602 (667)
+......
T Consensus 739 ll~a~~~ 745 (1018)
T KOG2002|consen 739 LLKARHL 745 (1018)
T ss_pred HHHHHHh
Confidence 8877443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-14 Score=150.76 Aligned_cols=125 Identities=8% Similarity=-0.011 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCChhHHHHhhccCC---CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhc
Q 005969 178 VANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAG 254 (667)
Q Consensus 178 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 254 (667)
.+..+...+...|++++|.+.|++.. ..+...+..+...+...|++++|+..+++.... .|+...+..+...+..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34444444444444444444444422 122334445555556666666666666666544 2322224444445556
Q ss_pred cCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC
Q 005969 255 LQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN 305 (667)
Q Consensus 255 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (667)
.|+.++|...++.+.+..+. +...+..+..++...|..+.|.+.++....
T Consensus 129 ~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 66666666666666665433 344444556666667777777777766554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-14 Score=149.33 Aligned_cols=322 Identities=11% Similarity=-0.028 Sum_probs=202.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 005969 209 SWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYA 288 (667)
Q Consensus 209 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (667)
....++..+.+.|++++|+.+++........+... +..+..+....|+.+.|...++.+.+..+. +...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 34456677788888888888888887764333333 333334455678888888888888776433 4556777777888
Q ss_pred hcCChHHHHHHHhccCC--C-CcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHH
Q 005969 289 KCDNLEGAHLCFSEISN--K-NIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLI 364 (667)
Q Consensus 289 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 364 (667)
..|++++|...+++... | +...+..+...+...|+.+ |...+..+......+....+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~------------------- 182 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIA------------------- 182 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHH-------------------
Confidence 88888888888877654 2 3445555666666666666 66666655443222211111
Q ss_pred HHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC----CCcchHH
Q 005969 365 IRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER----PDIVSWN 440 (667)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 440 (667)
.+ ..+...|++++|...++. +.+ ++...+.
T Consensus 183 -------------~~-~~l~~~g~~~eA~~~~~~--------------------------------~l~~~~~~~~~~~~ 216 (656)
T PRK15174 183 -------------TC-LSFLNKSRLPEDHDLARA--------------------------------LLPFFALERQESAG 216 (656)
T ss_pred -------------HH-HHHHHcCCHHHHHHHHHH--------------------------------HHhcCCCcchhHHH
Confidence 11 124455666666664443 322 1222233
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhh----HHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 441 IVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLAL----GSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 441 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
.+...+...|++++|+..++++.+.. +.+...+..+...+...|+.+. |...++.+.+.. |.+...+..+...
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~ 293 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHH
Confidence 34556667777777777777777643 3345566666677777777764 677777776653 4466677777777
Q ss_pred HHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhccCCHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVA-LIAVLTACRHGGLVREG 592 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~-~~~li~~~~~~g~~~~A 592 (667)
+...|++++|...+++.. .| +...+..+...+...|++++|+..++++... .|+... +..+..++...|++++|
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHH
Confidence 777777777777777665 23 3345666677777777888888777777764 454433 33345567777888888
Q ss_pred HHHHHHhHHh
Q 005969 593 MELFERMNRS 602 (667)
Q Consensus 593 ~~~~~~~~~~ 602 (667)
...|++..+.
T Consensus 372 ~~~l~~al~~ 381 (656)
T PRK15174 372 ESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHh
Confidence 8877776444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-13 Score=142.25 Aligned_cols=199 Identities=11% Similarity=0.034 Sum_probs=130.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCC----CCCchhHHhHHHHHHH
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEI----ISSDTFVCNMLIDMYG 518 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~ 518 (667)
+-++...|++.++++.|+.+...|.+....+-..+..+|...+++++|..+++.+..... .+++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 445556667777777777777666554555666677777777777777777776655431 1223333456677777
Q ss_pred hcCChHHHHHHHHhcCC--C-------------Ch---hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 005969 519 KCGSIGSSVKIFNEMTD--R-------------NV---ITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVL 580 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~~--~-------------~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li 580 (667)
..+++++|..+++.+.+ | |. ..+..++..+...|++.+|++.++++.... +-|......+.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A 457 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA 457 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 77777777777776653 1 11 133445677778888888888888887742 33677778888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 005969 581 TACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIW 644 (667)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~ 644 (667)
..+...|.+.+|++.++.. .. --+-+..+....+.++...|++.+|..+.++.. ..|+....
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a-~~-l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAV-ES-LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHhcCCHHHHHHHHHHH-hh-hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8888888888888888665 33 133334556677777788888888888876662 34444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-15 Score=154.46 Aligned_cols=323 Identities=8% Similarity=-0.080 Sum_probs=258.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhc
Q 005969 9 FNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGR 87 (667)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (667)
.-.++..+.+.|++.+|..+++........+....|...+. +..++++.|...++++.+.. |.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHH
Confidence 34567788899999999999999999855555556665655 66679999999999999987 7778888889999999
Q ss_pred cCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHH
Q 005969 88 HGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIH 164 (667)
Q Consensus 88 ~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 164 (667)
.|++++|...|++... | +...+..+...+...|++++|...++.+...... +...+.. +..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCCHHHHHHHH
Confidence 9999999999998764 4 4567888999999999999999999988765422 2233333 34477899999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC---CCchhHHHHHHHHHccCChhH----HHHHHHHhHhCC
Q 005969 165 GLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI---RDVVSWNTIIGALAESENFGK----ALELYLRMSVDI 237 (667)
Q Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g 237 (667)
+.+.+....++...+..+...+...|++++|...|++... .+...+..+...+.+.|++++ |...|++....
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l- 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF- 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence 9988775444555556667889999999999999988763 355677888899999999986 89999998865
Q ss_pred cCC-ChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC--CCccc-HHH
Q 005969 238 VFP-NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN--KNIVS-WNA 313 (667)
Q Consensus 238 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~ 313 (667)
.| +...+..+...+...|++++|...++...+.... +...+..+..++.+.|++++|.+.|+.+.. |+... +..
T Consensus 280 -~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 -NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 34 4556777888899999999999999999887533 456677888999999999999999998875 44333 333
Q ss_pred HHHHHhcCCChH-HHHHHHHHHHcCC
Q 005969 314 LILGYASKSSPT-SIFLLIELLQLGY 338 (667)
Q Consensus 314 li~~~~~~~~~~-a~~~~~~m~~~~~ 338 (667)
+...+...|+.+ |...+.+..+...
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 456788999999 9999999877543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-13 Score=147.11 Aligned_cols=385 Identities=10% Similarity=-0.044 Sum_probs=231.8
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVEDCMFLFC 130 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~ 130 (667)
+.++|..+++...... +.+...+..+..++.+.|++++|..++++... | +...+..+...+...|++++|+..++
T Consensus 30 ~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 30 QDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred CHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444444444444322 45555567777777788888888888877532 3 34556667777778888888888888
Q ss_pred HHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC-CCc--
Q 005969 131 ELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI-RDV-- 207 (667)
Q Consensus 131 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-- 207 (667)
+..+.. +.+.. +..+..++...|+.+.|...++.+.+... .+...+..+..++...|..+.|.+.++.... |+.
T Consensus 108 ~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 108 QLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred HHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence 877652 23344 66677777778888888888888877643 2455556677777777888888887776664 110
Q ss_pred ----hhHHHHHHHHH-----ccCCh---hHHHHHHHHhHhC-CcCCChh-hHHH----HHHHhhccCChhHHHHHHHHHH
Q 005969 208 ----VSWNTIIGALA-----ESENF---GKALELYLRMSVD-IVFPNQT-TFVY----VINSCAGLQNSILGKSIHAKVI 269 (667)
Q Consensus 208 ----~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-t~~~----ll~~~~~~~~~~~a~~~~~~~~ 269 (667)
......+.... ..+++ ++|++.++.+... ...|+.. .+.. .+..+...|+.++|...|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 01122222221 12233 6788888887754 2233321 1111 1334556688899999999888
Q ss_pred HhcCC-CCchHHHHHHHHHHhcCChHHHHHHHhccCCCC-------cccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCC
Q 005969 270 KNALE-CDVFVGSALVDFYAKCDNLEGAHLCFSEISNKN-------IVSWNALILGYASKSSPT-SIFLLIELLQLGYRP 340 (667)
Q Consensus 270 ~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~ 340 (667)
+.+.+ |+. ....+...|...|++++|...|+++...+ ......+..++...|+.+ |...+..+..... +
T Consensus 265 ~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P-~ 342 (765)
T PRK10049 265 AEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP-P 342 (765)
T ss_pred ccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC-c
Confidence 77643 322 22335678888999999999988875422 123455666778888888 8888888776421 1
Q ss_pred CHhhHHHHHHHhhhhhhhHHHHHHHHhcCcch---hhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHH
Q 005969 341 NEFTFSHVLRSSLAFQLLQLHCLIIRMGYENY---EYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIY 415 (667)
Q Consensus 341 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~ 415 (667)
....+.. ..-.|+ ...+..+...+...|+.++|++.++++ ..|.+...+..+..++
T Consensus 343 ~~~~~~~-------------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 343 FLRLYGS-------------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred eEeecCC-------------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1100000 000111 112235666777889999999888776 4455555556666666
Q ss_pred hhcCChhHHHHHHhcCCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005969 416 NRTGQYNETVKLLSQLER--PD-IVSWNIVIAACAHNGDYKEVLELFKYMRA 464 (667)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 464 (667)
...|++++|++.+++... |+ ...+......+...|++++|+.+++++.+
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666666666666665553 32 23334444455556666666666666665
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-13 Score=139.80 Aligned_cols=436 Identities=9% Similarity=0.018 Sum_probs=256.8
Q ss_pred HhhccCChhHHHHhhccCCC--CCch-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHH
Q 005969 84 LYGRHGCLDEVVSVFEDMPR--KSLV-TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFG 160 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 160 (667)
...+.|+++.|+..|++..+ |+.. .-..++..+...|+.++|+..+++... ...........+...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 35577777777777777654 3321 122666777777777777777777761 1111222222234466667777777
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCC--CchhHHHHHHHHHccCChhHHHHHHHHhHhCCc
Q 005969 161 EQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIR--DVVSWNTIIGALAESENFGKALELYLRMSVDIV 238 (667)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 238 (667)
.++++.+.+.... ++.++..++..+...++.++|++.++++... +...+-.++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~-- 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL-- 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--
Confidence 7777777776532 3556666677777777777777777777643 3233322222223345555577778777765
Q ss_pred CC-ChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHH
Q 005969 239 FP-NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILG 317 (667)
Q Consensus 239 ~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~ 317 (667)
.| +...+..++.++.+.|-...|.++..+- |+..+-...... ..+.|.+..+.-..++.
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~--------- 258 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR--------- 258 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcccccc---------
Confidence 34 3444455666666666666666554442 211111110000 01111111111100000
Q ss_pred HhcCCC---hH-HHHHHHHHHH-cCCCCCHhh-HHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHH
Q 005969 318 YASKSS---PT-SIFLLIELLQ-LGYRPNEFT-FSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISD 391 (667)
Q Consensus 318 ~~~~~~---~~-a~~~~~~m~~-~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (667)
....+ .+ ++.-+..+.. .+..|.... |... ..-.+-++...|++.+
T Consensus 259 -~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~---------------------------~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 259 -SETERFDIADKALADYQNLLTRWGKDPEAQADYQRA---------------------------RIDRLGALLVRHQTAD 310 (822)
T ss_pred -cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHH---------------------------HHHHHHHHHHhhhHHH
Confidence 00011 22 3444444333 122232221 1110 0134567778888999
Q ss_pred HHHHHHhcC---CCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCC---------CcchHHHHHHHHHHcCChhHHHHHH
Q 005969 392 ALAFVTALN---IPRAVVPANIIAGIYNRTGQYNETVKLLSQLERP---------DIVSWNIVIAACAHNGDYKEVLELF 459 (667)
Q Consensus 392 a~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~ 459 (667)
+.+.|+.+. .+........+.++|...+++++|+.+++.+..+ +......|..++...+++++|..++
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 999888884 3334445567888888888888888888876431 1222466788888899999999999
Q ss_pred HHHHHcCC-----------CC--CHH-HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHH
Q 005969 460 KYMRAARI-----------YP--DNY-TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGS 525 (667)
Q Consensus 460 ~~m~~~g~-----------~p--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 525 (667)
+++.+.-. .| |-. .+..++..+.-.|++.+|++.++.+.... |-|......+...+...|.+.+
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHH
Confidence 98887311 12 222 23445566777888888888888887664 5577888888888888888888
Q ss_pred HHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhH
Q 005969 526 SVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVA 575 (667)
Q Consensus 526 A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~ 575 (667)
|++.++... .| +..+....+.++...+++.+|..+.+.+... .|+...
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchh
Confidence 888887655 34 4456666777777778888888888777774 565443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-13 Score=126.18 Aligned_cols=450 Identities=14% Similarity=0.152 Sum_probs=283.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHhcCChhHHHHhhccCCC--C------CchhHHHHH
Q 005969 144 FVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVA-NSLVNMYFQCAGIWSAEKMFKDVEI--R------DVVSWNTII 214 (667)
Q Consensus 144 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li 214 (667)
...|.+-|.......+|...++.+.+...-|+.... ..+.+.|.+...+.+|.++++.... | .+...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 334455566666777888888888887766665443 2456677888888888888765431 2 123445555
Q ss_pred HHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHH--------HHHHHH
Q 005969 215 GALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVG--------SALVDF 286 (667)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~li~~ 286 (667)
-.+.+.|++++|+.-|+...+. .|+..+-..++-++...|+.++..+.|..|......||..-| ..|+.-
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5678889999999999888765 688777666666666678888888888888776443332211 112211
Q ss_pred HHhcCChH--------HHHH-------HHhccCCCCccc---HH----------HH--------HHHHhcCCChH-HHHH
Q 005969 287 YAKCDNLE--------GAHL-------CFSEISNKNIVS---WN----------AL--------ILGYASKSSPT-SIFL 329 (667)
Q Consensus 287 ~~~~g~~~--------~a~~-------~~~~~~~~~~~~---~~----------~l--------i~~~~~~~~~~-a~~~ 329 (667)
-.+...+. .|.+ +..-+..|+-.. |. .| ...+.++|+++ |.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 11111110 1111 111111121100 00 00 01133444444 4444
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHh--hCCHHHHHHHHHhc--CCCCCc
Q 005969 330 LIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAK--SGLISDALAFVTAL--NIPRAV 405 (667)
Q Consensus 330 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~--~~~~~~ 405 (667)
+.-+.... -......-+.|...+.- -.++..|.++-+.. ...-+.
T Consensus 442 lkv~~~kd-------------------------------nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 442 LKVFEKKD-------------------------------NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred HHHHHhcc-------------------------------chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 44333221 11111111122222221 23344444433222 111111
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHH---HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVI---AACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACS 482 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 482 (667)
.....-.+.....|++++|.+.+++....|...-.+|. -.+-..|++++|++.|-++..- +..+...+..+.+.|-
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye 569 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYE 569 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHH
Confidence 11112222344568888888888888776665544443 3466789999999999887643 3445667777888888
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALE 559 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 559 (667)
...+...|.+++..... .+|.|+....-|...|-+.|+...|.+.+-+-- ..++.+..-|...|....-+++++.
T Consensus 570 ~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 88899999988876654 467799999999999999999999998776544 2477788888888999989999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHh-ccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHh
Q 005969 560 KFREMEFLGFKPDRVALIAVLTACR-HGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITT 634 (667)
Q Consensus 560 ~~~~~~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (667)
+|++..- ++|+.+-|..++..|. +.|++.+|.++++...++ ++-+...+..|++.+...|. .+|.++-++
T Consensus 648 y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 648 YFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 9999876 7999999999888775 589999999999999544 88899999999999888773 444444333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-11 Score=123.56 Aligned_cols=609 Identities=12% Similarity=0.077 Sum_probs=347.3
Q ss_pred CCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccC---CCCCchhHHHHHHHHHhCCChHHHHH
Q 005969 51 DSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDM---PRKSLVTWNSIVSIFGKHGFVEDCMF 127 (667)
Q Consensus 51 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~ 127 (667)
..++.++|..++.+++++. +.....|..|...|-..|+.+++...+--. ...|..-|..+..-..+.|++++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 3456777777777777766 667777777777777777777776655332 22355667777777777777777777
Q ss_pred HHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHH----HHHHHHhcCChhHHHHhhccCC
Q 005969 128 LFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANS----LVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 128 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
+|.+.++.. +++...+-.-...|-+.|+...|..-+.++.....+.|..-... +++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777654 23434444455666677777777777777777654333332222 3444555566666766666554
Q ss_pred C-----CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhH--------------------------HHHHHHh
Q 005969 204 I-----RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTF--------------------------VYVINSC 252 (667)
Q Consensus 204 ~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--------------------------~~ll~~~ 252 (667)
. -+...++.++..+.+...++.|......+......+|..-+ -.+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 2 23445667777777777777777777666552222222111 1122334
Q ss_pred hccCChhHHHHHHHHHHHhc--CCCCchHHHHHHHHHHhcCChHHHHHHHhccCC----CCcccHHHHHHHHhcCCChH-
Q 005969 253 AGLQNSILGKSIHAKVIKNA--LECDVFVGSALVDFYAKCDNLEGAHLCFSEISN----KNIVSWNALILGYASKSSPT- 325 (667)
Q Consensus 253 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~- 325 (667)
...+..+....+.....+.. +..+...|.-+..+|...|++..|..+|..+.. .+...|-.+...|...|..+
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 45555555566666666665 333556677777777777777777777777655 34456777777777777777
Q ss_pred HHHHHHHHHHcCCCCCH----hhHHHHHHHhhhhh-hhHHHHH--------HHHhcCcchhhhHHHHHHHHHhhCCHHHH
Q 005969 326 SIFLLIELLQLGYRPNE----FTFSHVLRSSLAFQ-LLQLHCL--------IIRMGYENYEYVLGSLMTSYAKSGLISDA 392 (667)
Q Consensus 326 a~~~~~~m~~~~~~~~~----~~~~~~l~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 392 (667)
|.+.+...+.. .|+. ++.+++........ .++.... ....+..|...........+...|+.++-
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 77777766553 2221 23333332222111 1122222 22334556666666677777777877775
Q ss_pred HHHHHhcC-------------------------CCCCcchhHHHHHHHhhcCChhHHHHHHhcC--------CCCCc---
Q 005969 393 LAFVTALN-------------------------IPRAVVPANIIAGIYNRTGQYNETVKLLSQL--------ERPDI--- 436 (667)
Q Consensus 393 ~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~--- 436 (667)
..+-..+- .+........+..+-.+.++.....+-...- ...+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 55544330 0000111111222222222222111111111 01111
Q ss_pred -chHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCCH---HHHHHHHHHHhccCChhhHHHHHHHHHHh---CCCCCch
Q 005969 437 -VSWNIVIAACAHNGDYKEVLELFKYMRAARI--YPDN---YTFVSLLSACSKLCNLALGSSLHGLIKKT---EIISSDT 507 (667)
Q Consensus 437 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 507 (667)
..+.-++.++++.+++++|+.+...+..... .++. ..-...+.++...+++..|...++.+... ...+.-.
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1234567788899999999999988876542 2222 12234456677889999999998888765 1112235
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC--CCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHH-H
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN--VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLT-A 582 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~-~ 582 (667)
..|+..+....+.++----.+.+.... .|+ ...+....+-....+.+..|+..+-+.... .|+....+..+. +
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHH
Confidence 566655566665555444444444333 222 222223334455677888899888777663 677444433222 2
Q ss_pred Hh--------ccC--CHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CC------CC-----
Q 005969 583 CR--------HGG--LVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FP------PN----- 640 (667)
Q Consensus 583 ~~--------~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~------p~----- 640 (667)
+. ..+ ..-.+..++.+..+-++..-....+-.+.++|-..|-..-|..++++.- +. |.
T Consensus 784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~d 863 (895)
T KOG2076|consen 784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYD 863 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCccc
Confidence 21 111 1334566666663332332345678889999999999999999999872 21 11
Q ss_pred --HHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 641 --ALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 641 --~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
...-.-|.-.|..+|+...|..+.++
T Consensus 864 LrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 864 LRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 12223445568899999999888764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-10 Score=109.51 Aligned_cols=590 Identities=12% Similarity=0.041 Sum_probs=353.6
Q ss_pred ChHHHHHHHHHHHHCCCC--------CCchhHhHhh----ccCCc---cchhhHHHHHHHHHhCCCCCChhHHhhHHHHh
Q 005969 21 YVEDALRMFLYMINRGFE--------PTQFTFGGLL----SCDSL---NPVEGAQLQASVLKNGLFCADAFVGTALLGLY 85 (667)
Q Consensus 21 ~~~~a~~~~~~m~~~~~~--------p~~~~~~~ll----~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (667)
+..+|+.-+-.|.-..+. .|+..|..=+ ....+ +...|+.++....+.+.-.|..++.+ ...=
T Consensus 218 kig~ar~~l~~~kl~qvsdsvtgqtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAs--ArLE 295 (913)
T KOG0495|consen 218 KIGQARNTLMDMKLNQVSDSVTGQTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIAS--ARLE 295 (913)
T ss_pred hhhHHHHHHHhhhhhhccccCCCCcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHH--HHHH
Confidence 445666666666654322 2333343333 22222 88999999999999884444444444 3444
Q ss_pred hccCChhHHHHhhccCC---CCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCC--------------------------
Q 005969 86 GRHGCLDEVVSVFEDMP---RKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSE-------------------------- 136 (667)
Q Consensus 86 ~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------------------- 136 (667)
-..|++..|..+...=- .++...|-.-+ +....+.|..+.-...+.-
T Consensus 296 EvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRK 371 (913)
T KOG0495|consen 296 EVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRK 371 (913)
T ss_pred HHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHH
Confidence 45677777777764321 12233332211 1222333333333332211
Q ss_pred ---CcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---CCCchhH
Q 005969 137 ---VALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSW 210 (667)
Q Consensus 137 ---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 210 (667)
.-|+.+. |-++.....+.+.|.-++....+.- +.+...| -+|++..-++.|.++++... ..+...|
T Consensus 372 ALe~iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IW 443 (913)
T KOG0495|consen 372 ALEHIPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIW 443 (913)
T ss_pred HHHhCCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHH
Confidence 0111111 1122222223333444444443321 2222222 23333344444444444332 2233444
Q ss_pred HHHHHHHHccCChhHHHHHHHH----hHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCC--CchHHHHHH
Q 005969 211 NTIIGALAESENFGKALELYLR----MSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALEC--DVFVGSALV 284 (667)
Q Consensus 211 ~~li~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 284 (667)
-+-...=-.+|+.+...+++++ +...|+..+...|..=...|-..|.+-.+..+.......|++. -..+|..-.
T Consensus 444 itaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da 523 (913)
T KOG0495|consen 444 ITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDA 523 (913)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhH
Confidence 4433333445555555544432 3334555555555555555555555555555555555555433 123444445
Q ss_pred HHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHH
Q 005969 285 DFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360 (667)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~ 360 (667)
..|.+.+.++-|..+|....+ .+...|......--..|..+ -..+|.+......+
T Consensus 524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk--------------------- 582 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK--------------------- 582 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc---------------------
Confidence 555555555555555554433 22233433333333444444 34444444433221
Q ss_pred HHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC--CCCc
Q 005969 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE--RPDI 436 (667)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~ 436 (667)
....+-...+-+-..|++..|..++... -.|.+...+...+.....+.+++.|..+|.+.. .++.
T Consensus 583 -----------ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 583 -----------AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred -----------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 1222223445566679999999998887 566677778888888899999999999998876 4778
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN-YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
..|..-+..-.-.++.++|.+++++..+. -|+. ..|-.+-+.+-+.++.+.|...+..-.+. +|..+..|-.|..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLak 727 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHH
Confidence 88887777777788999999999888774 4554 46667777788888888888877655444 4656778888888
Q ss_pred HHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHH
Q 005969 516 MYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 592 (667)
.=-+.|.+-.|..+++... .| +...|-..|+.-.+.|+.+.|..+..+..+. ++.+...|.--|...-+.++-...
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHH
Confidence 8888899999999999766 44 6678888999999999999999988887775 455566777777777666664444
Q ss_pred HHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHhhhhhcC
Q 005969 593 MELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPN-ALIWRTFLEGCQRCRIAKYDTLNSTKC 667 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 667 (667)
...++ + ..-|+++...+...+....++++|.+.|.+. ...|| -.+|.-+.....++|.-++-+.++.+|
T Consensus 807 ~DALk----k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 807 IDALK----K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHH----h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44333 2 5667888888999999999999999999887 34444 688888888999999777666665554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.6e-13 Score=130.49 Aligned_cols=608 Identities=12% Similarity=0.033 Sum_probs=327.2
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChhHHhh
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAFVGTA 80 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (667)
.||..||.++|.-|+..|+.+.|- +|..|..+....+...++.++. -+.. +.+.+. .|.+.+|..
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhHHHH
Confidence 588899999999999999999999 9999998877777777777776 2222 555442 577778888
Q ss_pred HHHHhhccCChhH---HHHhhccCC-----------------------C--CCc----------hhHHHHHHHHHh----
Q 005969 81 LLGLYGRHGCLDE---VVSVFEDMP-----------------------R--KSL----------VTWNSIVSIFGK---- 118 (667)
Q Consensus 81 l~~~~~~~g~~~~---a~~~~~~~~-----------------------~--~~~----------~~~~~li~~~~~---- 118 (667)
|..+|..+|++.. +.+-+..+. + ||. ..|..++..+.+
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 8888888877543 333111110 0 111 122233332211
Q ss_pred --CCCh-----------HHHHHHHHHHHHCCC-cCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 005969 119 --HGFV-----------EDCMFLFCELVRSEV-ALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVN 184 (667)
Q Consensus 119 --~~~~-----------~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 184 (667)
.+.+ ....+++ .|.+.+. .|++.+|..++......|+++.|..++..|.+.|++.+..-+-.|+-
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl-~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLL-NMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHH-HHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 1100 0111111 1222222 48888888888888888888888888888888888888776666665
Q ss_pred HHHhcCChhHHHHhhccCC----CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhH
Q 005969 185 MYFQCAGIWSAEKMFKDVE----IRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSIL 260 (667)
Q Consensus 185 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 260 (667)
+ .++..-++.+++.|. .|+..|+...+-.+..+|....+.+..+ .....+...+..++++.....+++.
T Consensus 248 g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq----~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 248 G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQ----LAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccc----hhhhhhHHHHHHHhcccHhHHHHHH
Confidence 5 555555555555543 5788888777777777555322221110 0000111222333333222222222
Q ss_pred -----HHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCC-------CcccHHHHHHHHhcCCChH-HH
Q 005969 261 -----GKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNK-------NIVSWNALILGYASKSSPT-SI 327 (667)
Q Consensus 261 -----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~-a~ 327 (667)
....+....=.|+.....+|...+. ...+|+-+...++...+..| ++..|..++.-|.+.-+.- ..
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 1222222222333333333332222 22356666666666655442 3344544444443322111 11
Q ss_pred HHHH--HHHHc--C-------------CCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcC-------cchhhhHHHHHHHH
Q 005969 328 FLLI--ELLQL--G-------------YRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGY-------ENYEYVLGSLMTSY 383 (667)
Q Consensus 328 ~~~~--~m~~~--~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 383 (667)
.++. +.... + ..|+..--. +. .+...-..+.. .+-..+-+.++..+
T Consensus 400 ~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~--lv--------~Lss~Eler~he~~~~~~h~irdi~~ql~l~l 469 (1088)
T KOG4318|consen 400 RIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQ--LV--------GLSSTELERSHEPWPLIAHLIRDIANQLHLTL 469 (1088)
T ss_pred HHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHH--Hh--------hhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence 1111 11110 0 122211100 00 01111111111 12233445677777
Q ss_pred HhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCc------chHHHHHHHHHHcCChhHHHH
Q 005969 384 AKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDI------VSWNIVIAACAHNGDYKEVLE 457 (667)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~ 457 (667)
++.-+..+++..-+......-...|..++..+....+.+.|..+.++...++. .-+..+.+...+.+....+..
T Consensus 470 ~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 470 NSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 77777777765544443333337788888888999999999988888875443 446778888888889999999
Q ss_pred HHHHHHHcCC-CCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-
Q 005969 458 LFKYMRAARI-YPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT- 534 (667)
Q Consensus 458 ~~~~m~~~g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 534 (667)
++.++.+.-. .|+ ..++-.+++.....|+.+...++++.+...|... + .-++....+.++...|.++++...
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-t----gPl~~vhLrkdd~s~a~ea~e~~~q 624 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-T----GPLWMVHLRKDDQSAAQEAPEPEEQ 624 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-c----ccceEEEeeccchhhhhhcchHHHH
Confidence 9998877422 232 3456667777788889888888888888777543 2 345555667777777777776554
Q ss_pred --CCChhhHHHHHHHHHh--CCChHHHHHHHHHHH---HcCC---------CCCHhHHHHHHHHHhccCCHHHHHHHHHH
Q 005969 535 --DRNVITWTALISALGL--NGFAQRALEKFREME---FLGF---------KPDRVALIAVLTACRHGGLVREGMELFER 598 (667)
Q Consensus 535 --~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~---~~g~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (667)
++.+.....+.+.+-+ ..+++++..+-.... +.|- .|...+-+.- ..|...|...-.....+.
T Consensus 625 kyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~R-Dr~~de~e~~~lEll~el 703 (1088)
T KOG4318|consen 625 KYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGR-DRDTDEGEIVPLELLLEL 703 (1088)
T ss_pred HhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCC-ccccccCccccHHHHHHH
Confidence 2333322222222221 112333322211111 1110 0000000000 112222222222222222
Q ss_pred hHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005969 599 MNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCR 655 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~ 655 (667)
+ .. ......|+..|.+.|+++.|..+|.++++.|+..+...|...++++.
T Consensus 704 t-~~------lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n 753 (1088)
T KOG4318|consen 704 T-HE------LGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMN 753 (1088)
T ss_pred H-hH------hHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhc
Confidence 2 11 11233477788888888888888888888888888887777777664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-13 Score=123.40 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=135.2
Q ss_pred hcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHH
Q 005969 417 RTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSL 493 (667)
Q Consensus 417 ~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (667)
..|+.++|.+.|-++. ..+..+...+...|-...+...|++++...... ++.|+..+..|...|-+.|+...|.+.
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 3444444444554443 356666777788888889999999999887664 566888999999999999999999988
Q ss_pred HHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHH-HhCCChHHHHHHHHHHHHcCCC
Q 005969 494 HGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNVITWTALISAL-GLNGFAQRALEKFREMEFLGFK 570 (667)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~-~~~~~~~~A~~~~~~~~~~g~~ 570 (667)
+-.--+. .|.+..+...|...|....-++++...|++.. +|+..-|..|+..| .+.|++.+|.++|+...+. ++
T Consensus 615 ~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fp 691 (840)
T KOG2003|consen 615 HYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FP 691 (840)
T ss_pred hhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cc
Confidence 7654443 56688999999999999999999999999754 89999999998665 5689999999999999876 66
Q ss_pred CCHhHHHHHHHHHhccCC
Q 005969 571 PDRVALIAVLTACRHGGL 588 (667)
Q Consensus 571 p~~~~~~~li~~~~~~g~ 588 (667)
-|..+...|++.|...|-
T Consensus 692 edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cchHHHHHHHHHhccccc
Confidence 788899999999887774
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-11 Score=118.44 Aligned_cols=529 Identities=12% Similarity=0.036 Sum_probs=331.3
Q ss_pred hhccCChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHH
Q 005969 85 YGRHGCLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGE 161 (667)
Q Consensus 85 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 161 (667)
....|+.++|.+++.++.+ .+..+|.+|...|-..|+.+++...+-..-... +-|...|..+-....+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 3344999999999999875 356689999999999999999988776654432 446678888888888999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCc----h----hHHHHHHHHHccCChhHHHHHHHHh
Q 005969 162 QIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDV----V----SWNTIIGALAESENFGKALELYLRM 233 (667)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~a~~~~~~m 233 (667)
-.+...++.. +++...+-.-...|-+.|+...|.+-|.++.+.+. . .-..+++.+...++-+.|++.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999886 34555555667788899999999888777654222 1 2223456677777778888888776
Q ss_pred HhC-CcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhc---------------------------CCCCchHHHHHHH
Q 005969 234 SVD-IVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNA---------------------------LECDVFVGSALVD 285 (667)
Q Consensus 234 ~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~li~ 285 (667)
... +-..+..++++++..+.+...++.+......+.... ..++..+. -+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 652 234455667777777888888888877777666521 12222221 1122
Q ss_pred HHH--hcCChHHHHHHHhccCC----CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhh
Q 005969 286 FYA--KCDNLEGAHLCFSEISN----KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLL 358 (667)
Q Consensus 286 ~~~--~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (667)
++. +.+...+++.-|..... -++..|.-+..++...|.+. |+.++..+.....--+...|
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw------------- 452 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW------------- 452 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh-------------
Confidence 222 23333333333322222 23455666777788888888 88888777664333333333
Q ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCc
Q 005969 359 QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDI 436 (667)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 436 (667)
-.+...|...|..++|.+.|+.. ..|.+...--.+...+.+.|+.++|.+.++.+..||.
T Consensus 453 ------------------~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 453 ------------------YKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred ------------------HHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 47888899999999999999988 5666677777888899999999999999999875552
Q ss_pred ------------chHHHHHHHHHHcCChhHHHHHHHHHHHcC-----CCC-----------------CHHHHHHHHHHHh
Q 005969 437 ------------VSWNIVIAACAHNGDYKEVLELFKYMRAAR-----IYP-----------------DNYTFVSLLSACS 482 (667)
Q Consensus 437 ------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p-----------------~~~~~~~ll~~~~ 482 (667)
.........+...|+.++=+.+...|+..+ +-| ...+...++.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 222334455667788776555554444321 111 1122223333333
Q ss_pred ccCChhhHHHHHHH------HHHhCCCCCch-hHHhHHHHHHHhcCChHHHHHHHHhcCCC-----Chh----hHHHHHH
Q 005969 483 KLCNLALGSSLHGL------IKKTEIISSDT-FVCNMLIDMYGKCGSIGSSVKIFNEMTDR-----NVI----TWTALIS 546 (667)
Q Consensus 483 ~~~~~~~a~~~~~~------~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~----~~~~li~ 546 (667)
+.++......-... ....+....+- ..+.-++..+++.+++.+|+.+...+.+. +.. .-...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 33332222221111 11112111111 34566778889999999999999887742 111 2234566
Q ss_pred HHHhCCChHHHHHHHHHHHHc-CC--CCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC--cchhHHHHHHHh
Q 005969 547 ALGLNGFAQRALEKFREMEFL-GF--KPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE--MDHYHCVVDLLV 620 (667)
Q Consensus 547 ~~~~~~~~~~A~~~~~~~~~~-g~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 620 (667)
+.+..+++..|...++.|... +. .|. ...|+...+...+.|+-.--..++.... ..+|+ +.........+.
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~ 751 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLF 751 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHh
Confidence 777889999999999999874 11 232 2244544455555554333333333321 22222 223333445566
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005969 621 RYGHLKEAEKIITTM-PFPPNALIWRTFLEG 650 (667)
Q Consensus 621 ~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~ 650 (667)
..+.+..|++.+-+. ...||....+.++..
T Consensus 752 ~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 752 VNASFKHALQEYMRAFRQNPDSPLINLCLGL 782 (895)
T ss_pred hccchHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 788899998877665 356776555555444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-10 Score=108.49 Aligned_cols=438 Identities=9% Similarity=0.020 Sum_probs=255.8
Q ss_pred CChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHH----HHhcCCCchHHHHHHHHHHHhcCChhHH
Q 005969 120 GFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLV----IKNGFDYELLVANSLVNMYFQCAGIWSA 195 (667)
Q Consensus 120 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A 195 (667)
.-++.|..+++...+. ++-+...|.+....=-..|+.+.+.++++.- ...|+..+..-|-.=...+-+.|..-.+
T Consensus 420 etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 3344444444444432 3334444444333333444444444444332 2234444444444444444444444444
Q ss_pred HHhhccCC------CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHH
Q 005969 196 EKMFKDVE------IRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVI 269 (667)
Q Consensus 196 ~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 269 (667)
..+..... +.--.+|..-...|.+.+.++-|..+|....+- .+-+...|......--..|..+....+++...
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33333322 011235555555666666666666666655543 22334445555544455566666666666666
Q ss_pred HhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhH
Q 005969 270 KNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN--K-NIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTF 345 (667)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~ 345 (667)
..-.+ ....|-....-+...|+...|..++....+ | +...|-+-+..-..+..++ |..+|.+... ..|+...|
T Consensus 578 ~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~ 654 (913)
T KOG0495|consen 578 EQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVW 654 (913)
T ss_pred HhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhh
Confidence 55322 334444445555566777766666665544 2 2334555555555566666 6666655443 22333222
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhH
Q 005969 346 SHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNE 423 (667)
Q Consensus 346 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 423 (667)
.--+...--.++.++|.+++++. .-|.-...|.++...+.+.++.+.
T Consensus 655 -------------------------------mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 655 -------------------------------MKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred -------------------------------HHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHH
Confidence 24444445567888888888776 334445566777778888888888
Q ss_pred HHHHHhcCCC--CCcc-hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 424 TVKLLSQLER--PDIV-SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 424 a~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
|.+.|..-.+ |+.. .|-.+...=-+.|++-+|..++++..-++ +-+...|-..|+.-.+.|+.+.|..+..+..+.
T Consensus 704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888776664 4443 45555555566778888888888877654 445667778888888888888888887777665
Q ss_pred CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHH
Q 005969 501 EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAV 579 (667)
Q Consensus 501 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l 579 (667)
.|.+...|..-|....+.++-......++... .|....-.+...+-...++++|.+.|.+.++. .|| ..+|..+
T Consensus 783 --cp~sg~LWaEaI~le~~~~rkTks~DALkkce-~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~f 857 (913)
T KOG0495|consen 783 --CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-HDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWF 857 (913)
T ss_pred --CCccchhHHHHHHhccCcccchHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHH
Confidence 35566677777777777777666666555544 35555556666666777788888888887774 454 4577777
Q ss_pred HHHHhccCCHHHHHHHHHHh
Q 005969 580 LTACRHGGLVREGMELFERM 599 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~ 599 (667)
...+.+.|.-+.-.+++...
T Consensus 858 ykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 77777777777777777766
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-09 Score=99.43 Aligned_cols=493 Identities=11% Similarity=0.057 Sum_probs=268.5
Q ss_pred CChhHHhhHHHHhhccCChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChh-hHHHHH
Q 005969 73 ADAFVGTALLGLYGRHGCLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTES-SFVGVI 148 (667)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li 148 (667)
.+...|.-..+-=..++++..|.++|+.... .+...|-.-+..-.++.++..|..++++.... -|-.. .+-.-+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 3344444444444445677777777777653 45666666677777777777777777777652 23222 122222
Q ss_pred HHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC--CCCchhHHHHHHHHHccCChhHH
Q 005969 149 HGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE--IRDVVSWNTIIGALAESENFGKA 226 (667)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a 226 (667)
..=-..|++..|.++|+...+- .|+...|++.|+.=.+-+.++.|..++++.. .|++.+|--...-=.++|+...+
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 2223445666666666655542 4555566666655555555555555555543 45555555555544555555555
Q ss_pred HHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC-
Q 005969 227 LELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN- 305 (667)
Q Consensus 227 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 305 (667)
..+|+...+. --|... +...+.++...-.++...+.|.-+|+-..+
T Consensus 227 R~VyerAie~--~~~d~~-------------------------------~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 227 RSVYERAIEF--LGDDEE-------------------------------AEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHHH--hhhHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555544332 001111 122233333333334444455444433322
Q ss_pred -C---CcccHHHHHHHHhcCCChH-HHHHH---HHHH-HcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhH
Q 005969 306 -K---NIVSWNALILGYASKSSPT-SIFLL---IELL-QLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVL 376 (667)
Q Consensus 306 -~---~~~~~~~li~~~~~~~~~~-a~~~~---~~m~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (667)
| ....|.....-=-+-|+.. ..+.+ +.+. +.-+..++..|. ++
T Consensus 274 ~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD----------------------------sW 325 (677)
T KOG1915|consen 274 IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD----------------------------SW 325 (677)
T ss_pred cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch----------------------------HH
Confidence 1 1111222222112223322 11111 0111 000111111121 11
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhc--CCCCCcch--h--------HHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHH
Q 005969 377 GSLMTSYAKSGLISDALAFVTAL--NIPRAVVP--A--------NIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNI 441 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~--~--------~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 441 (667)
-..+..-...|+.+...++|++. ++||...- + +..+-.=....+.+.+.++++...+ ....||..
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence 24455555667777777777776 55553221 1 1112222345667777777766553 22334433
Q ss_pred H----HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH
Q 005969 442 V----IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY 517 (667)
Q Consensus 442 l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 517 (667)
+ ...-.++.++..|.+++...+ |.-|...+|...|..=.+.++++....++++..+-+ |.+-.+|.-....=
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHHH
Confidence 3 333456788888988888766 567888899999988888999999999999988875 44667777777777
Q ss_pred HhcCChHHHHHHHHhcC-CCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh-----ccC
Q 005969 518 GKCGSIGSSVKIFNEMT-DRNV----ITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR-----HGG 587 (667)
Q Consensus 518 ~~~~~~~~A~~~~~~~~-~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~-----~~g 587 (667)
...|+.+.|..+|+-.. +|.. ..|.+.|.--...|.+++|..+++++.+. .+....|-++...-. +.|
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQED 559 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccc
Confidence 78899999999998766 4533 35555666667788899999999998885 444445555544332 233
Q ss_pred -----------CHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH----hhcCChHHHHHHHHhCC
Q 005969 588 -----------LVREGMELFERMNRSYGVEPEMDHYHCVVDLL----VRYGHLKEAEKIITTMP 636 (667)
Q Consensus 588 -----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~m~ 636 (667)
....|..+|++....+.-..+..--..|+.++ ...|...+...+-..|+
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 45678888887643322222222222333333 34555555555555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=129.53 Aligned_cols=211 Identities=16% Similarity=0.184 Sum_probs=62.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHH
Q 005969 446 CAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGS 525 (667)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 525 (667)
....++++.|...++++...+.. +...+..++.. ...+++++|.+++...-+.. + ++..+..++..+.+.+++++
T Consensus 54 a~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 54 AWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--G-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--c-ccchhhHHHHHHHHHhHHHH
Confidence 33344455555555544443211 23333333333 34445555544444333221 1 33344444444555555555
Q ss_pred HHHHHHhcC-----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 526 SVKIFNEMT-----DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 526 A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
+.++++.+. +++...|..+...+.+.|+.++|++.+++..+. .|+ ......++..+...|+.+++.+++...
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 555544432 123344444555555555555555555555553 343 334455555555555555555555555
Q ss_pred HHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHhhhhh
Q 005969 600 NRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP--FPPNALIWRTFLEGCQRCRIAKYDTLNST 665 (667)
Q Consensus 600 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 665 (667)
.+. .+.++..+..+..++...|+.++|..++++.. .+.|+.....+..++...|+.+.|..+.+
T Consensus 207 ~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 207 LKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred HHH--CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333 24444445555555555555555555555542 22244444455555555555555554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-10 Score=115.10 Aligned_cols=274 Identities=9% Similarity=-0.042 Sum_probs=205.8
Q ss_pred hCCHHHHHHHHHhc-CCCCCcchh-HHHHHHHhhcCChhHHHHHHhcCCC--CCcchHH--HHHHHHHHcCChhHHHHHH
Q 005969 386 SGLISDALAFVTAL-NIPRAVVPA-NIIAGIYNRTGQYNETVKLLSQLER--PDIVSWN--IVIAACAHNGDYKEVLELF 459 (667)
Q Consensus 386 ~~~~~~a~~~~~~~-~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~ 459 (667)
.|+++.|.+.+... ...+.+..+ ........+.|+++.|...+.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 68999999888776 222222333 3334455888999999999988875 4433332 2356778899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch------hHHhHHHHHHHhcCChHHHHHHHHhc
Q 005969 460 KYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT------FVCNMLIDMYGKCGSIGSSVKIFNEM 533 (667)
Q Consensus 460 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~ 533 (667)
+++.+.. +-+...+..+...|.+.|+++.+.+++..+.+.+..++.. ..|..++.......+.+...++|+..
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998864 3356788888899999999999999999999887654221 13333444444556677778888877
Q ss_pred CC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcc
Q 005969 534 TD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMD 610 (667)
Q Consensus 534 ~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (667)
.+ .++.....+...+...|+.++|.+++++..+. .|+.... ++.+.+..++.+++.+..+...++ .+-|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 63 46778888899999999999999999998884 5555322 334445669999999999988544 455666
Q ss_pred hhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 611 HYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
.+..+...+.+.|++++|.+.|++. ...|+...+..+-..+.+.|+.+.|....++
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7889999999999999999999988 4789999999999999999999998777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-10 Score=102.26 Aligned_cols=293 Identities=11% Similarity=0.082 Sum_probs=210.0
Q ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCC---cchhHHHHHHHhhcCChhHHHHHHhcCCC
Q 005969 359 QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRA---VVPANIIAGIYNRTGQYNETVKLLSQLER 433 (667)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (667)
+-.......|++.++..-+....+.....++++|..+|+++ ..|-. ..+|..++-+-....+..---.....+.+
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK 327 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK 327 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 44445556677777777777777888889999999999988 33322 23333333222222222111112223345
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhH
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNM 512 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 512 (667)
-.+.|+.++.+-|.-.++.++|...|++..+. .|. ...|+.+-.-|....+...|.+.++.+.+-+ |.|-..|-.
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~DyRAWYG 403 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDYRAWYG 403 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhHHHHhh
Confidence 56677777888888888899999999998874 444 4567777778888999999999999888875 558888999
Q ss_pred HHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCH
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLV 589 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 589 (667)
|.++|.-.+...=|+-.|++.. +| |...|.+|..+|.+.++.++|++.|.+....| ..+...+..|.+.|-+.++.
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhH
Confidence 9999999999999999998776 34 77899999999999999999999999988876 45678888899999999999
Q ss_pred HHHHHHHHHhHHhh---CCCCC--cchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 005969 590 REGMELFERMNRSY---GVEPE--MDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWRTFLEGCQRCRI 656 (667)
Q Consensus 590 ~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~ 656 (667)
.+|...++..++.. |...+ ...---|...+.+.+++++|....... ...+...--+.|++.+++...
T Consensus 483 ~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 483 NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 99998888775532 22222 222233566677888999988876665 345666666777777766543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.4e-11 Score=115.85 Aligned_cols=249 Identities=10% Similarity=0.041 Sum_probs=194.5
Q ss_pred HHHHHhhCCHHHHHHHHHhc-CCCCCcchhH--HHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChh
Q 005969 380 MTSYAKSGLISDALAFVTAL-NIPRAVVPAN--IIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYK 453 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 453 (667)
.....+.|+.+.|.+.+.++ ..+|+..... .....+...|++++|...+++..+ .++.....+...|.+.|+++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 44557899999999999988 5556654333 346788999999999999999874 34567788899999999999
Q ss_pred HHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH
Q 005969 454 EVLELFKYMRAARIYPDN-------YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 454 ~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
+|..++..+.+.+..++. .+|..++.......+.+...++++.+-+.- +.++.....+...+...|+.++|
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~--~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT--RHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH--hCCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999998755332 133334444444455666666666664432 44788999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 527 VKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 527 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
.+++++..+.....--.++.+....++.+++++..++..+. .|+ +..+..+.+.|.+.|++++|.+.|+.... .
T Consensus 283 ~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~ 357 (398)
T PRK10747 283 QQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---Q 357 (398)
T ss_pred HHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---c
Confidence 99999877422222223455556679999999999999986 565 55788899999999999999999998853 5
Q ss_pred CCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 606 EPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.|+...+..+..++.+.|+.++|.+++.+-
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 799999999999999999999999998865
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.5e-13 Score=124.20 Aligned_cols=252 Identities=17% Similarity=0.151 Sum_probs=114.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc--CC--CCCcchhHHHHHHHhhcCChhHHHHHHhcCCCC---CcchHHHHHHHHHHcC
Q 005969 378 SLMTSYAKSGLISDALAFVTAL--NI--PRAVVPANIIAGIYNRTGQYNETVKLLSQLERP---DIVSWNIVIAACAHNG 450 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 450 (667)
.+...+.+.|++++|+++++.. .. +.+...+..+.......++++.|...++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5688899999999999999643 33 445555666777888899999999999998853 34456666666 7899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHH
Q 005969 451 DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIF 530 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 530 (667)
++++|.+++.+..+. .++...+..++..+.+.++++.+..+++.+......++++..|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887654 366677888888999999999999999998876544558888999999999999999999999
Q ss_pred HhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC
Q 005969 531 NEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEP 607 (667)
Q Consensus 531 ~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (667)
++.. .| |......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|++++|+.++++..+. .+.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~ 246 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPD 246 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccc
Confidence 9987 46 46788899999999999999999999988863 556778899999999999999999999998654 466
Q ss_pred CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 608 EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
|+.+...+.+++...|+.++|.++..+.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 8888999999999999999999988765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-08 Score=94.87 Aligned_cols=504 Identities=12% Similarity=0.126 Sum_probs=261.4
Q ss_pred HHHhcccCchHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHH
Q 005969 148 IHGLSNEQDLEFGEQIHGLVIKN-GFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKA 226 (667)
Q Consensus 148 i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 226 (667)
+..+...|++......|+..+.. .+.....+|...+.-....|-++-+.+++++..+-++..-+-.|..+++.+++++|
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHH
Confidence 33334444444444444443332 12223334444555444555555566666655544444555666666666666666
Q ss_pred HHHHHHhHhC------CcCCChhhHHHHHHHhhccCChh---HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHH
Q 005969 227 LELYLRMSVD------IVFPNQTTFVYVINSCAGLQNSI---LGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAH 297 (667)
Q Consensus 227 ~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 297 (667)
-+.+...... ..+.+...|..+....++.-+.- ....++..+...-..-=-..|.+|.+-|.+.|.+++|.
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 6666655432 12233333444444333332221 12222222222111112346788888888899999998
Q ss_pred HHHhccCC--CCcccHHHHHHHHhcCCChHHHHHHHHHH--HcCCCCCHhhHHHHHHHhhhhhhh---HHHHHHHHhcCc
Q 005969 298 LCFSEISN--KNIVSWNALILGYASKSSPTSIFLLIELL--QLGYRPNEFTFSHVLRSSLAFQLL---QLHCLIIRMGYE 370 (667)
Q Consensus 298 ~~~~~~~~--~~~~~~~~li~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~ 370 (667)
++|++... ..+.-|+.+..+|++-.....-..+. +. +.+-.-+.......+..+...-.. -+-..+.+ .-+
T Consensus 269 Dvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR-Qn~ 346 (835)
T KOG2047|consen 269 DVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR-QNP 346 (835)
T ss_pred HHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh-cCC
Confidence 88887654 34445566666655432222000111 11 112222222222222211111100 00011111 111
Q ss_pred chhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCC-----C-cchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHH
Q 005969 371 NYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPR-----A-VVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIV 442 (667)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~-----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 442 (667)
.+...+..-+. ...|+..+....|.+. ...| + ...+..+...|...|+.+.|..+|++..+.+-.+.+-|
T Consensus 347 ~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 347 HNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred ccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 11112211111 2235556666666655 1111 1 22355677778888888888888888876554444444
Q ss_pred HHHHH-------HcCChhHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 005969 443 IAACA-------HNGDYKEVLELFKYMRAARIY----------P-------DNYTFVSLLSACSKLCNLALGSSLHGLIK 498 (667)
Q Consensus 443 i~~~~-------~~g~~~~A~~~~~~m~~~g~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 498 (667)
...+| ++.+++.|+++.++.....-. | +...|...+..--..|-++....+++.+.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44443 456777787777765432111 1 12234444444445567777778888888
Q ss_pred HhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC----CChh-hHHHHHHHHHh---CCChHHHHHHHHHHHHcCCC
Q 005969 499 KTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD----RNVI-TWTALISALGL---NGFAQRALEKFREMEFLGFK 570 (667)
Q Consensus 499 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~---~~~~~~A~~~~~~~~~~g~~ 570 (667)
+..+.. +.........+....-++++.+++++-.. |++. .|+..+.-+.+ ...++.|..+|++..+ |++
T Consensus 505 dLriaT--Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp 581 (835)
T KOG2047|consen 505 DLRIAT--PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP 581 (835)
T ss_pred HHhcCC--HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC
Confidence 776544 33333333344455667888888887652 4443 56666555543 2357888888888888 677
Q ss_pred CCHhH--HHHHHHHHhccCCHHHHHHHHHHhHH--------------------hhCCCCCcchhHHHHHHH---------
Q 005969 571 PDRVA--LIAVLTACRHGGLVREGMELFERMNR--------------------SYGVEPEMDHYHCVVDLL--------- 619 (667)
Q Consensus 571 p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~~~~~~l~~~~--------- 619 (667)
|...- |-.....=-+-|-...|.+++++... -+|++-+..+|..-|..+
T Consensus 582 p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mc 661 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMC 661 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHH
Confidence 75432 22222222334666677777766422 246666655555544443
Q ss_pred -------hhcCChHHHHHHHHhCC--CC--CCHHHHHHHHHHHHhcCChh
Q 005969 620 -------VRYGHLKEAEKIITTMP--FP--PNALIWRTFLEGCQRCRIAK 658 (667)
Q Consensus 620 -------~~~g~~~~A~~~~~~m~--~~--p~~~~~~~l~~~~~~~~~~~ 658 (667)
++.|..+.|..++..-. .. .+...|++.-..-++|||-+
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 46688888888887663 23 35678888888888888844
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-10 Score=114.36 Aligned_cols=276 Identities=10% Similarity=-0.055 Sum_probs=202.6
Q ss_pred HhhCCHHHHHHHHHhc-CCCCC-cchhHHHHHHHhhcCChhHHHHHHhcCCC--CCcc--hHHHHHHHHHHcCChhHHHH
Q 005969 384 AKSGLISDALAFVTAL-NIPRA-VVPANIIAGIYNRTGQYNETVKLLSQLER--PDIV--SWNIVIAACAHNGDYKEVLE 457 (667)
Q Consensus 384 ~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~--~~~~li~~~~~~g~~~~A~~ 457 (667)
...|+++.|.+.+... ...|+ ...+-....+..+.|+++.|.+.+.+..+ |+.. ..-.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4679999999998877 33343 33345556778888999999999988653 4443 23334777788999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHh-HHHHHH---H----hcCChHHHHHH
Q 005969 458 LFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCN-MLIDMY---G----KCGSIGSSVKI 529 (667)
Q Consensus 458 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~---~----~~~~~~~A~~~ 529 (667)
.++.+.+.. +-+...+..+...+.+.|+++.+.+.+..+.+.+..+ +..+. .-..++ . .....+...+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~--~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD--DEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999864 3356688889999999999999999999999987543 33231 111111 2 22234455556
Q ss_pred HHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhH--H-HHHHHHHhccCCHHHHHHHHHHhHHhh
Q 005969 530 FNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVA--L-IAVLTACRHGGLVREGMELFERMNRSY 603 (667)
Q Consensus 530 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~--~-~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (667)
++...+ .+...+..+...+...|+.++|.+.+++..+. .||... + ....-.....++.+.+.+.++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 665553 47788888999999999999999999999985 455442 1 22222234567888898888887555
Q ss_pred CCCCCc--chhHHHHHHHhhcCChHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 604 GVEPEM--DHYHCVVDLLVRYGHLKEAEKIITT---MPFPPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 604 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
.+-++ ....++...+.+.|++++|.+.|++ ....|+...+..+...+...|+.+.|....++
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334 5677899999999999999999994 34689999999999999999999999887765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-10 Score=113.13 Aligned_cols=255 Identities=11% Similarity=-0.017 Sum_probs=186.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc-CCCCCcc--hhHHHHHHHhhcCChhHHHHHHhcCCC--C-CcchHHHHHHHHHHcCC
Q 005969 378 SLMTSYAKSGLISDALAFVTAL-NIPRAVV--PANIIAGIYNRTGQYNETVKLLSQLER--P-DIVSWNIVIAACAHNGD 451 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 451 (667)
....+....|+.+.|.+.+... ...|+.. ........+...|++++|...++.+.+ | +...+..+...+...|+
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 3346677889999999999987 3334443 333458888999999999999999874 3 45677888999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hccCChhhHHHHHHHHHHhCC--CCCchhHHhHHHHHHHhcCChHHH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSAC---SKLCNLALGSSLHGLIKKTEI--ISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
+++|.+++..+.+.+..+.......-..++ ...+..+.+.+.+..+.+... .+.++..+..+...+...|+.++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999987543332211111221 222233333344444444321 113788999999999999999999
Q ss_pred HHHHHhcCC--CChhh---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-H--hHHHHHHHHHhccCCHHHHHHHHHH
Q 005969 527 VKIFNEMTD--RNVIT---WTALISALGLNGFAQRALEKFREMEFLGFKPD-R--VALIAVLTACRHGGLVREGMELFER 598 (667)
Q Consensus 527 ~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~ 598 (667)
.+++++..+ ||... ...........++.+.+.+.+++..+. .|+ + ....++.+.|.+.|++++|.+.|+.
T Consensus 283 ~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 283 QEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999998874 54432 122223334467889999999998875 565 4 5567899999999999999999996
Q ss_pred hHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 599 MNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
. ......|+...+..+...+.+.|+.++|.+++++-
T Consensus 361 a-~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 361 V-AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred h-HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 33356899999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-08 Score=93.22 Aligned_cols=420 Identities=11% Similarity=0.088 Sum_probs=227.7
Q ss_pred CChhHHHHhhccCC---CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCCh-hhHHHHHHHhhccCChhHHHHHH
Q 005969 190 AGIWSAEKMFKDVE---IRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQ-TTFVYVINSCAGLQNSILGKSIH 265 (667)
Q Consensus 190 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~ 265 (667)
+++..|..+|++.. .+++..|--.+..=+++.....|..++++.... -|-. ..|--.+..--..|++..|.++|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 44444555555443 234444555555555566666666666655433 2221 11222222333446666666666
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC--CCcccHHHHHHHHhcCCChH-HHHHHHHHHHc-CCCCC
Q 005969 266 AKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN--KNIVSWNALILGYASKSSPT-SIFLLIELLQL-GYRPN 341 (667)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~-~~~~~ 341 (667)
+.-.+- .|+...|.+.|+.-.+-+.++.|..+++...- |++.+|--...-=-++|... +..++....+. |-
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~--- 239 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD--- 239 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh---
Confidence 655443 56666666666666666666666666665432 55555555555445566666 65555543331 11
Q ss_pred HhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCC--cchhHHHHH---H
Q 005969 342 EFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRA--VVPANIIAG---I 414 (667)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~--~~~~~~l~~---~ 414 (667)
...-.. +|.++...-.++..++.|.-+|+-. ..|.+ ...|..+.. -
T Consensus 240 d~~~e~---------------------------lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 240 DEEAEI---------------------------LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 111111 1112222223333444444444333 11111 111111111 1
Q ss_pred HhhcCChhHHHHHHhcCC-----C---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-----
Q 005969 415 YNRTGQYNETVKLLSQLE-----R---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNY--TFVSLLS----- 479 (667)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~----- 479 (667)
++.....++++--=.+++ . .|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .+...|-
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHH
Confidence 111111222221111221 2 23445555566666678888888888887764 555321 1222211
Q ss_pred HH---hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH----HhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHh
Q 005969 480 AC---SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY----GKCGSIGSSVKIFNEMT--DRNVITWTALISALGL 550 (667)
Q Consensus 480 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~ 550 (667)
++ ....+++.+.++++.+.+. .|-...||.-+--+| .++.++..|.+++-... -|...+|...|..-.+
T Consensus 372 alyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElq 449 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQ 449 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11 2457788888888887773 454555555444333 46678888888887766 4777778877877778
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHH
Q 005969 551 NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEK 630 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (667)
.++++.+..++++.++-+ +-|..+|......=...|+.+.|..+|+-.+.+.........+.+.|+.=...|.++.|..
T Consensus 450 L~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred HhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 888888888888888842 3356777777777777888888888888775553333333445666666677888888888
Q ss_pred HHHhCC-CCCCHHHHHHH
Q 005969 631 IITTMP-FPPNALIWRTF 647 (667)
Q Consensus 631 ~~~~m~-~~p~~~~~~~l 647 (667)
+++++- -.+...+|-++
T Consensus 529 LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 529 LYERLLDRTQHVKVWISF 546 (677)
T ss_pred HHHHHHHhcccchHHHhH
Confidence 888772 33344455444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-09 Score=97.59 Aligned_cols=395 Identities=12% Similarity=0.043 Sum_probs=204.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhHhCCcCCC-hhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCC-chHHHHHHHHH
Q 005969 210 WNTIIGALAESENFGKALELYLRMSVDIVFPN-QTTFVYVINSCAGLQNSILGKSIHAKVIKNALECD-VFVGSALVDFY 287 (667)
Q Consensus 210 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 287 (667)
+-....-|.++|.+++|++.|.+..+. .|| +..|.....+|...|+++.+.+--....+. .|+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 334456678888899999988888764 677 666677777788888888877766665554 333 23445555667
Q ss_pred HhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHH--------HH---cCCCCCHhhHHHHHHHhhhh
Q 005969 288 AKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIEL--------LQ---LGYRPNEFTFSHVLRSSLAF 355 (667)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m--------~~---~~~~~~~~~~~~~l~~~~~~ 355 (667)
-..|++++|+.= .+-.++..++....-.- +.+++.+. .. ..+-|+.....+.+..+...
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 777887777531 23333444433333222 33444321 11 11333433333333322111
Q ss_pred hhhHHHHHHHHhcCcchhhhHHHHHHHHHh-----hCCHHHHHHHHHhc----CCC-----CCcchhHHHHHH-------
Q 005969 356 QLLQLHCLIIRMGYENYEYVLGSLMTSYAK-----SGLISDALAFVTAL----NIP-----RAVVPANIIAGI------- 414 (667)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~----~~~-----~~~~~~~~l~~~------- 414 (667)
-. . ....+.+.....+..++.. ...+..|.+.+.+. ... .+... ..+..+
T Consensus 265 ~~----~----~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF 335 (606)
T KOG0547|consen 265 PK----P----LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTF 335 (606)
T ss_pred cc----c----cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhh
Confidence 00 0 0011111111122222111 11233343333322 000 11111 111221
Q ss_pred HhhcCChhHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHH
Q 005969 415 YNRTGQYNETVKLLSQLER--P-DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGS 491 (667)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 491 (667)
+.-.|+.-.|..-|+.... | +...|--+...|....+.++-...|++..+.+ +-|+.+|..-.....-.++++.|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 1233445555555554442 1 12225555566666777777777777766643 334455655555555666677777
Q ss_pred HHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005969 492 SLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLG 568 (667)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g 568 (667)
.-|++..... |.+...|--+.-+..+.++++++...|++..+ | .+..|+.....+..++++++|++.|+..++.
T Consensus 415 aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 7777766653 33455555555566666777777777776663 3 3446666667777777777777777776663
Q ss_pred CCCC-------HhHH--HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 569 FKPD-------RVAL--IAVLTACRHGGLVREGMELFERMNRSYGVEPE-MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 569 ~~p~-------~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.|+ ..++ ..++..- =.+++..|.+++++..+ +.|. ...|..|.......|+.++|+++|++-
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred -ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333 1111 1111111 12667777777766532 2232 234666777777777777777777765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-11 Score=114.52 Aligned_cols=263 Identities=11% Similarity=0.059 Sum_probs=154.6
Q ss_pred HHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC------CCcchHHHHHHHHHHcCChhHHHHHH-
Q 005969 389 ISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER------PDIVSWNIVIAACAHNGDYKEVLELF- 459 (667)
Q Consensus 389 ~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~- 459 (667)
..+|...|..+ ..+.+......+..+|...+++++|+++|+.+++ .+...|.+.+..+-+. -++..+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 44555555554 2333334444555566666666666666666653 3455566666544321 122222
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChh
Q 005969 460 KYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVI 539 (667)
Q Consensus 460 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 539 (667)
+++.+. -+-.+.+|..+.++|.-+++.+.|++.|++..+.+ |....+|+.+..-+.....+|.|...|+.....|..
T Consensus 411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 222222 13345677777777777777777777777776654 335666667766677777777777777777766655
Q ss_pred hHHH---HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHH
Q 005969 540 TWTA---LISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCV 615 (667)
Q Consensus 540 ~~~~---li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 615 (667)
.||+ +...|.+.++++.|+-.|++..+ +.| +.+....+...+-+.|+.++|+.++++...- -+-++..--.-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 5444 45666777777777777777766 455 3555666666667777777777777766322 12233333344
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHhh
Q 005969 616 VDLLVRYGHLKEAEKIITTMP-FPPN-ALIWRTFLEGCQRCRIAKYDTL 662 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~~~~~~a~~ 662 (667)
+..+...+++++|++.+++++ +.|+ ..++..+...|.+-|+...|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 555566677777777777774 4454 4445555566776676666643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.2e-08 Score=96.90 Aligned_cols=541 Identities=12% Similarity=0.148 Sum_probs=277.0
Q ss_pred HhhHHHHhhccCChhHHHHhhccCCC--CCchh-----HHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHH
Q 005969 78 GTALLGLYGRHGCLDEVVSVFEDMPR--KSLVT-----WNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHG 150 (667)
Q Consensus 78 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 150 (667)
+..+.+.|.+.|-...|++.+..+.. +.+++ =.-++. |.-.-.++++.+++..|...+++.+..+..-+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56777888999999999998888754 11111 112233 33345688999999999998888877766555555
Q ss_pred hcccCchHHHHHHHHHHHHh-----------cCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---------------C
Q 005969 151 LSNEQDLEFGEQIHGLVIKN-----------GFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---------------I 204 (667)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------~ 204 (667)
|...=-.+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-. -
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 54433344444555544321 356678888889999999999999988876542 0
Q ss_pred C---------Cchh-HHHHHHHHHccCChhHHHHHHHHhHhCCcCC-----------Chhh-------------HHHHHH
Q 005969 205 R---------DVVS-WNTIIGALAESENFGKALELYLRMSVDIVFP-----------NQTT-------------FVYVIN 250 (667)
Q Consensus 205 ~---------~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----------~~~t-------------~~~ll~ 250 (667)
+ |..- -+.++. |.-.++..+-+++|-+-..-+-.| +... -.-++.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvl-YLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVL-YLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred cccCceEEEecccccHHHHHH-HHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 1 1111 111221 111222222222222211111111 1111 112333
Q ss_pred HhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHH-
Q 005969 251 SCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIF- 328 (667)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~- 328 (667)
-+-+.+++..-...++.....|.. |..++++|...|...++-.+- +++ .|...-+..+..||...++- |.-
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--fLk----eN~yYDs~vVGkYCEKRDP~lA~va 919 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--FLK----ENPYYDSKVVGKYCEKRDPHLACVA 919 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--hcc----cCCcchhhHHhhhhcccCCceEEEe
Confidence 344455555566667777777765 888999999888876654321 111 11111122233333333222 110
Q ss_pred ------------------HHHHHHH-cCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcC--cchhhhHHHHHHHHHhhC
Q 005969 329 ------------------LLIELLQ-LGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGY--ENYEYVLGSLMTSYAKSG 387 (667)
Q Consensus 329 ------------------~~~~m~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 387 (667)
+|+.... .--+.|...|..++.--.. -.-++.+.....++ ..|+.-.+.-++++...+
T Consensus 920 YerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~-~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtad 998 (1666)
T KOG0985|consen 920 YERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENP-YRRQLIDQVVQTALPETQDPEEVSVTVKAFMTAD 998 (1666)
T ss_pred ecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccCh-HHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcC
Confidence 0110000 0012333444433321100 01144444444444 346677778889999999
Q ss_pred CHHHHHHHHHhcCCCCCcchh-----HHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHH
Q 005969 388 LISDALAFVTALNIPRAVVPA-----NIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYM 462 (667)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 462 (667)
-+.+-.++++++-..++..+- +.++-...+ .+...+.+..+++..-|.. .+......++-+++|..+|++.
T Consensus 999 Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 999 LPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred CcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHh
Confidence 999999999998444444332 222222222 2334444455544432221 1122333445566666666653
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHH
Q 005969 463 RAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWT 542 (667)
Q Consensus 463 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 542 (667)
. .+....+.||.- .+++++|.++-+++. .+..|..+..+-.+.|.+.+|.+-|-+.. |+..|.
T Consensus 1075 ~-----~n~~A~~VLie~---i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~ 1137 (1666)
T KOG0985|consen 1075 D-----MNVSAIQVLIEN---IGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYL 1137 (1666)
T ss_pred c-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHH
Confidence 2 233333344332 233444443333221 33444445555555555555544443322 333444
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCC--------------------------CCHhHHHHHHHHHhccCCHHHHHHHH
Q 005969 543 ALISALGLNGFAQRALEKFREMEFLGFK--------------------------PDRVALIAVLTACRHGGLVREGMELF 596 (667)
Q Consensus 543 ~li~~~~~~~~~~~A~~~~~~~~~~g~~--------------------------p~~~~~~~li~~~~~~g~~~~A~~~~ 596 (667)
.++....+.|.+++-.+++....+..-+ ||..-...+.+-|...|.++.|.-+|
T Consensus 1138 eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1138 EVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 4455555555555555544444443333 44444444444444444444444444
Q ss_pred HHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHhh
Q 005969 597 ERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYDTL 662 (667)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~ 662 (667)
... .-|..|...+...|.+..|.+...+. .+..||...-.+|.-.+.++.|+.
T Consensus 1218 ~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKA---ns~ktWK~VcfaCvd~~EFrlAQi 1270 (1666)
T KOG0985|consen 1218 SNV----------SNFAKLASTLVYLGEYQGAVDAARKA---NSTKTWKEVCFACVDKEEFRLAQI 1270 (1666)
T ss_pred HHh----------hhHHHHHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHhchhhhhHHHh
Confidence 333 22555666666666666666555544 467899999999998888888764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-10 Score=98.56 Aligned_cols=251 Identities=12% Similarity=0.111 Sum_probs=187.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCCCcch------hHHHHHHHhhcCChhHHHHHHhcCCCCC---cchHHHHHHHHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTALNIPRAVVP------ANIIAGIYNRTGQYNETVKLLSQLERPD---IVSWNIVIAACAH 448 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~ 448 (667)
+|.+.|.+.|.+|.|+.+-..+...|+... ...+..-|...|-++.|+.+|..+.+.. ....-.|+..|-.
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 788999999999999999998866665543 3456677888999999999999887633 3456678888999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChH
Q 005969 449 NGDYKEVLELFKYMRAARIYPDNY----TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIG 524 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 524 (667)
..+|++|+++-+++.+.|-++... .|.-+...+....+.+.|...+++..+.+ |.....--.+.+.+...|++.
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQ 231 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchH
Confidence 999999999999988876555432 45566666677788999999999888875 335556667788889999999
Q ss_pred HHHHHHHhcCCCChh----hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 525 SSVKIFNEMTDRNVI----TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 525 ~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
.|.+.|+.+.+.|.. +...|..+|...|+.++....+.++.+. .++...-..+.+.-....-.+.|..++.+-.
T Consensus 232 ~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 232 KAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 999999998865543 5667788999999999999999998885 4444444555554444455566666665443
Q ss_pred HhhCCCCCcchhHHHHHHHhh---cCChHHHHHHHHhC
Q 005969 601 RSYGVEPEMDHYHCVVDLLVR---YGHLKEAEKIITTM 635 (667)
Q Consensus 601 ~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m 635 (667)
+. +|+...+..|++.-.. .|...+....+.+|
T Consensus 310 ~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 310 RR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred hh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 44 7898888888887653 34455556666665
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9e-09 Score=95.90 Aligned_cols=409 Identities=13% Similarity=0.021 Sum_probs=207.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCcCC-hhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCc-hHHHHHHHHHH
Q 005969 109 WNSIVSIFGKHGFVEDCMFLFCELVRSEVALT-ESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYE-LLVANSLVNMY 186 (667)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 186 (667)
+-...+-|-++|++++|++.+...++ ..|+ +..|+....+|...|+|+++.+--...++.+ |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 44455677889999999999999998 4588 7788889999999999999887766666543 33 45666667777
Q ss_pred HhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHH---------hHhC--CcCCChhhHHHHHHHhhcc
Q 005969 187 FQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLR---------MSVD--IVFPNQTTFVYVINSCAGL 255 (667)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---------m~~~--g~~p~~~t~~~ll~~~~~~ 255 (667)
-..|++++|+.- .+-.+++.++-...-..-+.+++++ |..+ -+-|+.....+....+...
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 778888877431 1222233333222222222222222 1211 1334444444433332210
Q ss_pred CChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHh--cC---ChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHH
Q 005969 256 QNSILGKSIHAKVIKNALECDVFVGSALVDFYAK--CD---NLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFL 329 (667)
Q Consensus 256 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g---~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~ 329 (667)
- ......+.......+..++.. .+ .+..|.+.+.+-.. ..... ...+..+ -+
T Consensus 265 ~------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~------~~~~~--~~~n~~d~~l-- 322 (606)
T KOG0547|consen 265 P------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL------GSESS--LSVNEIDAEL-- 322 (606)
T ss_pred c------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh------hhhhh--ccccccchhH--
Confidence 0 000000011111111111110 00 12222222111000 00000 0001111 00
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcch
Q 005969 330 LIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVP 407 (667)
Q Consensus 330 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~ 407 (667)
+.|.. ++. .....+.-.|+.-.|..-|+.. ..+.....
T Consensus 323 -e~~A~---------------al~------------------------~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l 362 (606)
T KOG0547|consen 323 -EYMAE---------------ALL------------------------LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL 362 (606)
T ss_pred -HHHHH---------------HHH------------------------HhhhhhhhcCCchhhhhhHHHHHhcCcccchH
Confidence 00100 000 0011122234444444444443 22222222
Q ss_pred hHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 005969 408 ANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSK 483 (667)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 483 (667)
|-.+...|....+.++.++.|....+ .++.+|..-.+.+.-.+++++|..=|++.++ +.|+ ...|.-+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHH
Confidence 55555556666666666666655542 3445555555555566667777777776665 3332 3345455555556
Q ss_pred cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCC-------hhh--HHHHHHHHHhCC
Q 005969 484 LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN-------VIT--WTALISALGLNG 552 (667)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-------~~~--~~~li~~~~~~~ 552 (667)
.+.++.+...|++.++. .|..+..|+.....+...++++.|.+.|+... +|. +.+ -..++ .+-..+
T Consensus 441 ~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~ 517 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhh
Confidence 66777777777776665 34456677777777777777777777776554 222 111 11111 111336
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 553 FAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 553 ~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
++..|++++++..+ +.|. ...|-.|...-.+.|+.++|+++|++.
T Consensus 518 d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 518 DINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777776 3554 346777777777777777777777765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-08 Score=93.29 Aligned_cols=354 Identities=9% Similarity=0.031 Sum_probs=198.6
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHH--HHH
Q 005969 172 FDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFV--YVI 249 (667)
Q Consensus 172 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~--~ll 249 (667)
...|...+-.....+.+.|....|...|......-+..|.+.+.-.--..+.+.+..+.. |...|..-+. .+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHH
Confidence 344555544555556677888888888887775555556555543333333333332221 2222222221 123
Q ss_pred HHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCc------ccHHHHHHHHhcCCC
Q 005969 250 NSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNI------VSWNALILGYASKSS 323 (667)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~ 323 (667)
.++-...+.+++.+-.......|++.+...-+-...+.-...+++.|+.+|+++.+.|+ .+|+.++-. ++..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 34555567788888888888888877777666666667778889999999998876433 334333311 1111
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCC
Q 005969 324 PTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPR 403 (667)
Q Consensus 324 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 403 (667)
.. +..+.. .++. -.+-
T Consensus 313 sk-Ls~LA~-------------------------------------------------------------~v~~--idKy 328 (559)
T KOG1155|consen 313 SK-LSYLAQ-------------------------------------------------------------NVSN--IDKY 328 (559)
T ss_pred HH-HHHHHH-------------------------------------------------------------HHHH--hccC
Confidence 11 000000 0000 0111
Q ss_pred CcchhHHHHHHHhhcCChhHHHHHHhcCCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005969 404 AVVPANIIAGIYNRTGQYNETVKLLSQLERPD---IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480 (667)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 480 (667)
.+.+...+.+-|...++.++|...|++..+.| ...|+.+.+-|....+...|.+-++..++-. +.|-..|-.|-++
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 22233333344444444444444665555433 2446666666777777777777777776642 3455666677777
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHH
Q 005969 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRA 557 (667)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A 557 (667)
|.-.+...-|+-.|++..+.. |.|+..|.+|.+.|.+.++.++|.+.|..... -+...+..|.+.|-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 777777777777777766653 55677777777777777777777777776552 3335666777777777777777
Q ss_pred HHHHHHHHH----cCCCCC-H-hHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 558 LEKFREMEF----LGFKPD-R-VALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 558 ~~~~~~~~~----~g~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
...|++-++ .|..-+ . ...--|..-+.+.+++++|-.+....
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 776666544 222222 1 12222444556666666666655444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-09 Score=96.29 Aligned_cols=274 Identities=11% Similarity=0.020 Sum_probs=215.9
Q ss_pred hhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCC----CcchHHHHHHHHHHcCChhHHHHH
Q 005969 385 KSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERP----DIVSWNIVIAACAHNGDYKEVLEL 458 (667)
Q Consensus 385 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 458 (667)
..|++..|+++..+. ..+.....|..-+++-.+.|+.+.+-.++.+..++ +...+-+........|+++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 368999999998877 33344455566667778889999999999888753 334455566677889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch-------hHHhHHHHHHHhcCChHHHHHHHH
Q 005969 459 FKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT-------FVCNMLIDMYGKCGSIGSSVKIFN 531 (667)
Q Consensus 459 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 531 (667)
+.++.+.+ +-+........++|.+.|++.....++..+.+.+... +. .+|+.+++-....+..+.-...|+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~-~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS-DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC-hHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99998865 4456778888999999999999999999999998765 43 366677776666667777677888
Q ss_pred hcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC
Q 005969 532 EMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE 608 (667)
Q Consensus 532 ~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (667)
... +.++..-.+++.-+...|+.++|.++..+..+.+..|.. ...-.+.+-++...-.+..+...+..+..|
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 776 346677778888899999999999999999998777761 122345677888888888887756644444
Q ss_pred cchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 609 MDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 609 ~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|.-+-.++...|+.+.|..+.+.
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 78899999999999999999999976 5899999999999999999999999877653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.9e-12 Score=81.94 Aligned_cols=50 Identities=30% Similarity=0.434 Sum_probs=45.4
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 536 RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 536 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999998875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-09 Score=94.23 Aligned_cols=290 Identities=13% Similarity=0.028 Sum_probs=182.4
Q ss_pred ccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 005969 219 ESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHL 298 (667)
Q Consensus 219 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 298 (667)
..|+|..|.++..+-.+.+-.| ...|..-.++.-..|+.+.+-..+.+..+....++..++-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3566666666666655544333 233444455556666777777777666666555555666666666677777777766
Q ss_pred HHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhh
Q 005969 299 CFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEY 374 (667)
Q Consensus 299 ~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (667)
-+++..+ .++.........|.+.|++. ...++.+|.+.|+-.|...-.. ...
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------------e~~ 230 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------------EQQ 230 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------------HHH
Confidence 6555433 45566666777777777777 7777777777766555432210 001
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCC
Q 005969 375 VLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGD 451 (667)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~ 451 (667)
++..+++-....+..+.-.. .++..+ +.++..-.+++.-+.+.|+
T Consensus 231 a~~glL~q~~~~~~~~gL~~--------------------------------~W~~~pr~lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKT--------------------------------WWKNQPRKLRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred HHHHHHHHHhccccchHHHH--------------------------------HHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence 11233333333333333333 444444 3456666777888888999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFN 531 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 531 (667)
.++|.++..+..+++..|+..+ .-.+.+.++.+.-.+..+...+.. |.++..+.+|...|.+.+.|.+|...|+
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred hHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999998888876666221 223556677777777776666554 3356778888888888888888888887
Q ss_pred hcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 005969 532 EMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKP 571 (667)
Q Consensus 532 ~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p 571 (667)
... +|+..+|+.+..++.+.|+..+|.+..++....-.+|
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 655 5777788888888888888888877777766443333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-10 Score=108.64 Aligned_cols=188 Identities=10% Similarity=0.101 Sum_probs=104.3
Q ss_pred CcchhHHHHHHHhhcCChhHHHHHHhcCCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH---HH
Q 005969 404 AVVPANIIAGIYNRTGQYNETVKLLSQLERPD---IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFV---SL 477 (667)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~l 477 (667)
++.+|..+.++|.-+++.+.|++.|++..+.| ..+|+.+..-+.....+|.|...|+.... .|...|+ -+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGl 495 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGL 495 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhh
Confidence 33344444444444444444444555544322 23444444444555555566555555532 2333222 33
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCCh
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFA 554 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~ 554 (667)
...|.+.++.+.|+-.|+++.+-+ |.+......+...+.+.|+.++|++++++.. + .|+..--..+..+...++.
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 444566666666666666665554 3355555666666666666666666666654 2 2443333445555666777
Q ss_pred HHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 555 QRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
++|+..++++++ +.|+ ...|..+...|.+.|+.+.|+.-|--+
T Consensus 574 ~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 574 VEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 777777777777 3554 445666666777777777777766655
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-09 Score=95.29 Aligned_cols=267 Identities=11% Similarity=0.071 Sum_probs=206.2
Q ss_pred hhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC-CCcch------HHHHHHHHHHcCChhHH
Q 005969 385 KSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER-PDIVS------WNIVIAACAHNGDYKEV 455 (667)
Q Consensus 385 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~li~~~~~~g~~~~A 455 (667)
-+++.++|.+.|-++ ..+.+..+--++.+.|.+.|..+.|+.+-+.+.+ ||... .-.|..-|...|-++.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 357899999999998 6777777888899999999999999999998775 54432 33456668889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc---hhHHhHHHHHHHhcCChHHHHHHHHh
Q 005969 456 LELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD---TFVCNMLIDMYGKCGSIGSSVKIFNE 532 (667)
Q Consensus 456 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 532 (667)
+.+|..+.+.| .--......|+..|-...+|++|.+.-+++.+.+..+.. ...|..|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998865 344567888999999999999999999999888754422 23566677777788899999999998
Q ss_pred cCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc
Q 005969 533 MTDR---NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 533 ~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (667)
..+. .+..--.+.+.....|+++.|++.|+...+.+..--+.+...|..+|...|+.++...++.++.+. .+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCc
Confidence 8743 334444567888999999999999999999743334668899999999999999999999998654 4444
Q ss_pred chhHHHHHHHhhcCChHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcC
Q 005969 610 DHYHCVVDLLVRYGHLKEAEK-IITTMPFPPNALIWRTFLEGCQRCR 655 (667)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~-~~~~m~~~p~~~~~~~l~~~~~~~~ 655 (667)
..-..+.+.-....-.+.|.. +.+.+.-+|+...++.|+..-....
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccc
Confidence 444444444433333455555 4455667899999999988755443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-07 Score=92.50 Aligned_cols=368 Identities=13% Similarity=0.072 Sum_probs=212.1
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCch-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchH
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSLV-TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLE 158 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 158 (667)
.-|.+|....++++|+.+-+....|... .-.+.++++...|+-++|-++-+. .-.-.+.|+.|.+.|...
T Consensus 562 ~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s---------dgd~laaiqlyika~~p~ 632 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKES---------DGDGLAAIQLYIKAGKPA 632 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccc---------cCccHHHHHHHHHcCCch
Confidence 3456666677777777777665555322 223345555556666665543211 111123455555555555
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCc
Q 005969 159 FGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIV 238 (667)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 238 (667)
.|...... ...+..|......+..++++..-+++|-.+|+++..++- .+..|-+..-+.+|+++-+-. .
T Consensus 633 ~a~~~a~n--~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfa----f 701 (1636)
T KOG3616|consen 633 KAARAALN--DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFA----F 701 (1636)
T ss_pred HHHHhhcC--HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhh----C
Confidence 44433211 111223444444444445554445555555555443221 122222222233444332211 0
Q ss_pred CCChhhHHHHH-HHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCc--ccHHHHH
Q 005969 239 FPNQTTFVYVI-NSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNI--VSWNALI 315 (667)
Q Consensus 239 ~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li 315 (667)
+....+....- ..+...|+++.|..-|-+... ...-+.+......|.+|..+++.+.+.++ ..|..+.
T Consensus 702 p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~s~yy~~ia 772 (1636)
T KOG3616|consen 702 PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIA 772 (1636)
T ss_pred cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHH
Confidence 00000000000 001222333333322222110 11234455566778888888887776544 3467777
Q ss_pred HHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHH
Q 005969 316 LGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALA 394 (667)
Q Consensus 316 ~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 394 (667)
..|+..|+++ |.++|.+.- .++-.+.+|.+.|++++|.+
T Consensus 773 dhyan~~dfe~ae~lf~e~~----------------------------------------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEAD----------------------------------------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHhccchhHHHHHHHHHhcc----------------------------------------hhHHHHHHHhccccHHHHHH
Confidence 7888888888 777776521 12367889999999999999
Q ss_pred HHHhc-CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 005969 395 FVTAL-NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYT 473 (667)
Q Consensus 395 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 473 (667)
+-.+. +.......|..-..-+-+.|++.+|+.++-.+..|+. .|..|-+.|..+..+++..+-.- ..-..|
T Consensus 813 la~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt 884 (1636)
T KOG3616|consen 813 LAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDT 884 (1636)
T ss_pred HHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHH
Confidence 88887 6666777788888889999999999999999888875 47889999999999888776422 112346
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
...+..-+-..|++..|..-|-+.. -|.+-+++|-..+.|++|.++-+.-.
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccc
Confidence 6677777888899988887765433 34456777888888888888776544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-12 Score=81.86 Aligned_cols=50 Identities=38% Similarity=0.737 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSK 483 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 483 (667)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.2e-09 Score=97.74 Aligned_cols=480 Identities=11% Similarity=0.041 Sum_probs=241.0
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhcc--CCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFED--MPRKSLVTWNSIVSIFGKHGFVEDCMFLFCE 131 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 131 (667)
.+..|.-+-+++...+ .|+...-.+++.+.-.|..+.|..+++. +...+..+.......+.+..++++|..++..
T Consensus 31 ~y~~a~f~adkV~~l~---~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 31 RYKTALFWADKVAGLT---NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGR 107 (611)
T ss_pred hhhHHHHHHHHHHhcc---CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555556555544 4444445667778888888888887765 3456777888888888888999999888873
Q ss_pred HHHC--CCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchh
Q 005969 132 LVRS--EVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVS 209 (667)
Q Consensus 132 m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 209 (667)
-... ++.-++.+ . .... +.+.+. ++ .++......+-.-...|......++|...|.+...-|+..
T Consensus 108 ~~~~~~~f~yy~~~--~-~~~l----~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c 174 (611)
T KOG1173|consen 108 GHVETNPFSYYEKD--A-ANTL----ELNSAG----ED--LMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKC 174 (611)
T ss_pred cchhhcchhhcchh--h-hcee----ccCccc----cc--ccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhh
Confidence 2100 00000000 0 0000 000000 00 0011111111111223444455556666665555445554
Q ss_pred HHHHHHHHHccC-ChhHHHHHHHHhHhC-CcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 005969 210 WNTIIGALAESE-NFGKALELYLRMSVD-IVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFY 287 (667)
Q Consensus 210 ~~~li~~~~~~~-~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 287 (667)
|..+...-...= ...+-+++|..+.-. -.+-+......+.........-+.....-.+..-.+..-+..+...-.+-+
T Consensus 175 ~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~ 254 (611)
T KOG1173|consen 175 FEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRL 254 (611)
T ss_pred HHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHH
Confidence 444332111100 011122222211000 001111111111111100000000000000011112233444444555556
Q ss_pred HhcCChHHHHHHHhccCCCC---cccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHH
Q 005969 288 AKCDNLEGAHLCFSEISNKN---IVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCL 363 (667)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 363 (667)
...+++.+..++++.+.+.+ ...+..-|..+...|+.. -..+=.+|+..
T Consensus 255 y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--------------------------- 307 (611)
T KOG1173|consen 255 YYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--------------------------- 307 (611)
T ss_pred HHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---------------------------
Confidence 66667777777766665522 233333344444444443 22222333332
Q ss_pred HHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCC---cchHH
Q 005969 364 IIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPD---IVSWN 440 (667)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 440 (667)
-|....+|-.+.--|...|+..+|.+.|.+....| ...|-
T Consensus 308 -------------------------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl 350 (611)
T KOG1173|consen 308 -------------------------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWL 350 (611)
T ss_pred -------------------------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHH
Confidence 22233333333333333344444444555544322 24566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc
Q 005969 441 IVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC 520 (667)
Q Consensus 441 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 520 (667)
.+...|+-.|..++|+..+...-+. ++-...-+--+---|.+.++.+.|.++|...... .|.|+...+.+.-.....
T Consensus 351 ~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~ 427 (611)
T KOG1173|consen 351 AFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTY 427 (611)
T ss_pred HHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehH
Confidence 6667777777777777777665542 1111112222333466777778888877776654 466777777777777777
Q ss_pred CChHHHHHHHHhcCC---------C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 521 GSIGSSVKIFNEMTD---------R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 521 ~~~~~A~~~~~~~~~---------~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
+.+.+|..+|+.... + ...+++.|..+|.+.+.+++|+..+++.... .+-+..++.++.-.|...|+++
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChH
Confidence 777777777776551 1 2345777778888888888888888887775 2446677777777777888888
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHHh
Q 005969 591 EGMELFERMNRSYGVEPEMDHYHCVVDLLV 620 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 620 (667)
.|.+.|.+. ..+.|+-.+-..++..+.
T Consensus 507 ~Aid~fhKa---L~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 507 KAIDHFHKA---LALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHH---HhcCCccHHHHHHHHHHH
Confidence 888887744 356777766665555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-08 Score=94.72 Aligned_cols=281 Identities=12% Similarity=0.062 Sum_probs=222.9
Q ss_pred cCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHH
Q 005969 368 GYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIV 442 (667)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 442 (667)
+..-++.+.....+-+...+++.+..++.+.. ..|+....+..-+.++...|+..+-..+=.++.+ ....+|-++
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 45556666677788888999999999999988 7888888888888899999988777666666663 345789999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
.--|...|+..+|.+.|.+... +.|. ...|-.+...|+-.+.-++|...+..+.+.= +....-+--+..-|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhc
Confidence 9899999999999999998765 3333 2467777888999999999999988877752 112222333556788899
Q ss_pred ChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCC----CHhHHHHHHHHHhccCCHHHH
Q 005969 522 SIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFL--GFKP----DRVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 522 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~p----~~~~~~~li~~~~~~g~~~~A 592 (667)
..+-|.+.|.... .| |+...+-+.-..-..+.+.+|..+|+..... .+.+ -..+++.|..+|.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 9999999999876 34 6677887777777788999999999887731 0111 344788999999999999999
Q ss_pred HHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 005969 593 MELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWRTFLEGCQRC 654 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~ 654 (667)
+..+++.... .+.+..++.++.-.|...|+++.|.+.|.+. .+.|+..+-..++..+...
T Consensus 475 I~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 475 IDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999998554 6778889999999999999999999999887 4899998888888766544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.4e-06 Score=81.19 Aligned_cols=529 Identities=12% Similarity=0.102 Sum_probs=305.4
Q ss_pred hhhHHHHHHHHHhCCC--CCChhHHhhHHHHhhccCChhHHHHhhccCCC-----CCchhHHHHHHHHHhCCChHHHHHH
Q 005969 56 VEGAQLQASVLKNGLF--CADAFVGTALLGLYGRHGCLDEVVSVFEDMPR-----KSLVTWNSIVSIFGKHGFVEDCMFL 128 (667)
Q Consensus 56 ~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~ 128 (667)
+.+-..++...+...+ .--+.+|...++.+.++|++...+.+|+.... .....|...+......|-++-++.+
T Consensus 81 ~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 81 DPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 3344444444443311 24456778888889999999999999887542 3556888888888889999999999
Q ss_pred HHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhc------CCCchHHHHHHHHHHHhcCC---hhHHHHhh
Q 005969 129 FCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNG------FDYELLVANSLVNMYFQCAG---IWSAEKMF 199 (667)
Q Consensus 129 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 199 (667)
+++.++ .++..-..-|..++..+++++|.+.+..+.... .+.+-..|+-+-+..++..+ --...+++
T Consensus 161 yrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 161 YRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 999977 444557788888999999999999988876432 23445566666665555433 22345555
Q ss_pred ccCCC--CC--chhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCC------------------
Q 005969 200 KDVEI--RD--VVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQN------------------ 257 (667)
Q Consensus 200 ~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~------------------ 257 (667)
+.+.. +| -..|++|...|.+.|.+++|.++|++-.+. ..+..-|..+..+|+.-..
T Consensus 237 R~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~e 314 (835)
T KOG2047|consen 237 RGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEE 314 (835)
T ss_pred HhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChh
Confidence 55543 23 347999999999999999999999987765 2333344444444432111
Q ss_pred ----hhHHHHHHHHHHHhcCC----------C-CchHHHHHHHHHHhcCChHHHHHHHhccCC---C------CcccHHH
Q 005969 258 ----SILGKSIHAKVIKNALE----------C-DVFVGSALVDFYAKCDNLEGAHLCFSEISN---K------NIVSWNA 313 (667)
Q Consensus 258 ----~~~a~~~~~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~ 313 (667)
++....-|+.+...... | ++..|..-+. +..|+..+-...+.+... | --..|..
T Consensus 315 d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 315 DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVE 392 (835)
T ss_pred hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHH
Confidence 11111222222221100 0 0011111110 111222222222222211 0 0112344
Q ss_pred HHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHH
Q 005969 314 LILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDA 392 (667)
Q Consensus 314 li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 392 (667)
+.+-|-.+|+.+ |..+|++..+...+--... ..+|..-..+-.+..+++.|
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dL----------------------------a~vw~~waemElrh~~~~~A 444 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDL----------------------------AEVWCAWAEMELRHENFEAA 444 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHH----------------------------HHHHHHHHHHHHhhhhHHHH
Confidence 444444555555 5555544333221111000 12233344555566777888
Q ss_pred HHHHHhcCCCCCc--------------------chhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHH---HHHHc
Q 005969 393 LAFVTALNIPRAV--------------------VPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIA---ACAHN 449 (667)
Q Consensus 393 ~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~---~~~~~ 449 (667)
+++++....-|.. ..+...++.....|-++....+++++.+..+.|=.++++ .+-.+
T Consensus 445 l~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 445 LKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH 524 (835)
T ss_pred HHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8887776222221 123445555555677777777888777543333222222 22234
Q ss_pred CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc---cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH----hcC
Q 005969 450 GDYKEVLELFKYMRAARIYPDN-YTFVSLLSACSK---LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG----KCG 521 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 521 (667)
.-++++.+++++=+..--.|+. ..|+..+.-+.+ ...++.|..+|+++.+ + .||. ....+.-.|+ +-|
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~-Cpp~--~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G-CPPE--HAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c-CCHH--HHHHHHHHHHHHHHHhh
Confidence 4567777777765544334554 356665555433 3578999999999998 3 3432 2222333333 447
Q ss_pred ChHHHHHHHHhcCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHH---HHHHHhccCCHHHHH
Q 005969 522 SIGSSVKIFNEMTDR-----NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIA---VLTACRHGGLVREGM 593 (667)
Q Consensus 522 ~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~---li~~~~~~g~~~~A~ 593 (667)
-...|.+++++.... -...||+.|.--...=-+....++|++.++. -|+...-.. ..+.=++.|..+.|.
T Consensus 601 Lar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRAR 678 (835)
T KOG2047|consen 601 LARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRAR 678 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 788899999987631 2357888876655544466677888888884 676554333 344457889999999
Q ss_pred HHHHHhHHhhCCCCCcchhHHHHHHHhhcCChH
Q 005969 594 ELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLK 626 (667)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 626 (667)
.++....+-..-..+...|.+.-..=.+.|+-+
T Consensus 679 aIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 679 AIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 999887443233334456777777778888843
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-06 Score=84.57 Aligned_cols=519 Identities=13% Similarity=0.062 Sum_probs=289.3
Q ss_pred HhhccCChhHHHHhhccCCCCCch--hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHH
Q 005969 84 LYGRHGCLDEVVSVFEDMPRKSLV--TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGE 161 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 161 (667)
+-.....+.+|+.+++.+..++.. -|..+..-|+..|+++.|.++|.+. ..++-.|..|.+.|.|+.|.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 334557788888888888765443 4777888999999999999998653 23566788899999999998
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCC
Q 005969 162 QIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPN 241 (667)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 241 (667)
++-+.. .|.+.....|-+-..-.-+.|++.+|++++-.+..|+.. |..|-+.|..++.+++..+-....+
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d~l--- 881 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGDHL--- 881 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChhhh---
Confidence 886654 344555666777777778899999999999988888753 6778889999999888876432211
Q ss_pred hhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCccc-----------
Q 005969 242 QTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVS----------- 310 (667)
Q Consensus 242 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------- 310 (667)
..|-..+-.-+-..|++..|+.-|-+..+ |.+-+++|-..+-|++|.++-+.-...|..-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig 952 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG 952 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence 23444555556777888877765544332 3455666666777777766654332211110
Q ss_pred -------------HHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhh------------------
Q 005969 311 -------------WNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLL------------------ 358 (667)
Q Consensus 311 -------------~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~------------------ 358 (667)
...-+...+.++.++ |.++-+-..+.....-...+...+. ..+.+
T Consensus 953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~le---degk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLE---DEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhh---hccchhhhhHhhHHHhhcccccc
Confidence 001111122333333 3332221111111000111111111 01111
Q ss_pred --------HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhc
Q 005969 359 --------QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQ 430 (667)
Q Consensus 359 --------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 430 (667)
.+-....+.|-+|. ..+.++.+.+++..|.++-+.-....-...+.--.+.....|++.+|+.++-+
T Consensus 1030 twcqavpsrfd~e~ir~gnkpe-----~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllr 1104 (1636)
T KOG3616|consen 1030 TWCQAVPSRFDAEFIRAGNKPE-----EAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLR 1104 (1636)
T ss_pred hhhhcccchhhHHHHHcCCChH-----HHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheee
Confidence 12223334444554 23455666777777776655432222222333334445567788888888888
Q ss_pred CCCCCcchHHHHHHHHHHcCChhHHHHHHHHHH----------------HcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 005969 431 LERPDIVSWNIVIAACAHNGDYKEVLELFKYMR----------------AARIYPDNYTFVSLLSACSKLCNLALGSSLH 494 (667)
Q Consensus 431 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 494 (667)
..+|+. .++.|...+-+..|+++-+... +.| ......|..-.+-+-+.|++.+|...+
T Consensus 1105 ankp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~ 1178 (1636)
T KOG3616|consen 1105 ANKPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDAL 1178 (1636)
T ss_pred cCCCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHH
Confidence 777875 3455666677777666644321 122 223344555555666777777776665
Q ss_pred HHHHHhC--------------------CCCCch--hHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCC
Q 005969 495 GLIKKTE--------------------IISSDT--FVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNG 552 (667)
Q Consensus 495 ~~~~~~~--------------------~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 552 (667)
-++-+.. +.+++. ....+...++...|..+.|.+++-... .-...|.++|+..
T Consensus 1179 lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~-----~~keaida~~~~e 1253 (1636)
T KOG3616|consen 1179 LKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD-----LSKEAIDAFCEAE 1253 (1636)
T ss_pred hhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhh-----hHHHHHHHHHhHH
Confidence 5543221 011111 222222222333333333333322111 1123467777777
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HhHH------------------HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhH
Q 005969 553 FAQRALEKFREMEFLGFKPD-RVAL------------------IAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 553 ~~~~A~~~~~~~~~~g~~p~-~~~~------------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (667)
.+.+|.++-+++.-. ..|. ...| -..|..+...++|++|+..-. ++ +++|-..-|.
T Consensus 1254 ewakakqvake~~p~-~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idtak---~q-nykpil~kyv 1328 (1636)
T KOG3616|consen 1254 EWAKAKQVAKELDPE-MEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTAK---KQ-NYKPILDKYV 1328 (1636)
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHHH---hc-ccHHHHHHHH
Confidence 777777776664321 1111 1122 134455666677776665432 23 6777666665
Q ss_pred HH-HHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhc
Q 005969 614 CV-VDLLVRYGHLKEAEKIITTMP---FPPNALIWRTFLEGCQRC 654 (667)
Q Consensus 614 ~l-~~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~l~~~~~~~ 654 (667)
.+ ...+.+.|+..+|+.++++-+ .+.+...|..++.-....
T Consensus 1329 a~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lak 1373 (1636)
T KOG3616|consen 1329 ALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAK 1373 (1636)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcC
Confidence 54 344678888888888888885 233455666666554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-06 Score=80.78 Aligned_cols=539 Identities=13% Similarity=0.057 Sum_probs=267.6
Q ss_pred hhccCChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHH
Q 005969 85 YGRHGCLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGE 161 (667)
Q Consensus 85 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 161 (667)
+...|+-++|......-.+ .+.++|+.+.-.+....++++|+++|......+ +-|...+.-+--.-++.|+++...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3444555555555544332 344556655555555566666666666665533 123333333333334455555555
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC-----CCchhHHHH------HHHHHccCChhHHHHHH
Q 005969 162 QIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI-----RDVVSWNTI------IGALAESENFGKALELY 230 (667)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------i~~~~~~~~~~~a~~~~ 230 (667)
.....+.+.. +.....|.....++.-.|+...|..+.+...+ ++...|... ...+.+.|..++|++.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5444444432 12233455555555555666655555544331 222222111 12344556666666655
Q ss_pred HHhHhCCcCCChhhH-HHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHH-HHHHHHHHhcCChHHHH-HHHhccCC--
Q 005969 231 LRMSVDIVFPNQTTF-VYVINSCAGLQNSILGKSIHAKVIKNALECDVFVG-SALVDFYAKCDNLEGAH-LCFSEISN-- 305 (667)
Q Consensus 231 ~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~-~~~~~~~~-- 305 (667)
..-... ..|...| .+-...+.+.+++++|..++..+.... ||...| -.+..++.+-.+..++. .+|....+
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 443221 1122222 122223455666666666666666553 333333 33333333222222222 44444433
Q ss_pred CCcccHHHHHHHHhcCCC-hH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhh-----HHHHHHHHhcC---------
Q 005969 306 KNIVSWNALILGYASKSS-PT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLL-----QLHCLIIRMGY--------- 369 (667)
Q Consensus 306 ~~~~~~~~li~~~~~~~~-~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~--------- 369 (667)
|-...-..+-........ .+ .-..+..+.+.|+++--..+.++.+--....-+ .....+...|.
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 100000000001111112 22 334566677777776655555555432211111 11111111111
Q ss_pred -cchhhh--HHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCc---chHHH
Q 005969 370 -ENYEYV--LGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDI---VSWNI 441 (667)
Q Consensus 370 -~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ 441 (667)
+|++.. +-.++..+-+.|+++.|...++.. ..|.-+..|..-.+.+...|.+++|..++++..+.|. ..=.-
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 334333 345677888999999999999887 4444466677788899999999999999998886333 22224
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH----------HHHHhccCChhhHHHHHHHHHH-------hCCC-
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSL----------LSACSKLCNLALGSSLHGLIKK-------TEII- 503 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----------l~~~~~~~~~~~a~~~~~~~~~-------~~~~- 503 (667)
-..-..++++.++|..+....-..|. +....-.- ..+|.+.+++..|..-|..+.+ ....
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDf 522 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDF 522 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhH
Confidence 55566778999999999888887774 22211111 2346666676666544433322 2110
Q ss_pred ------CCchhHHhHHHHHHHhcCC-------hHHHHHHHHhcC-CCChh-----hHHH----HHHHHHhC-CChHHHHH
Q 005969 504 ------SSDTFVCNMLIDMYGKCGS-------IGSSVKIFNEMT-DRNVI-----TWTA----LISALGLN-GFAQRALE 559 (667)
Q Consensus 504 ------~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~-~~~~~-----~~~~----li~~~~~~-~~~~~A~~ 559 (667)
.-+..+|--|+...-...+ ...|.+++-.|. .|+.. .... .-....+. .+-.+|.+
T Consensus 523 htyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~ 602 (700)
T KOG1156|consen 523 HTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKK 602 (700)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 0023344444433222211 123455555444 23211 0111 11111111 11222222
Q ss_pred HHHHHHH---------cCCC--CCHhHHHHHHHHHhccCC-HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHH
Q 005969 560 KFREMEF---------LGFK--PDRVALIAVLTACRHGGL-VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKE 627 (667)
Q Consensus 560 ~~~~~~~---------~g~~--p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 627 (667)
.-..+.+ .|.+ ||.. .+...+.+..+ .++|.+++..+ .. ..+-+..+|-.-...|.|.|.+.-
T Consensus 603 e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l-~~-~~~~~~~~~iL~~ely~rk~k~~l 677 (700)
T KOG1156|consen 603 EAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNL-QH-KGKEKGETYILSFELYYRKGKFLL 677 (700)
T ss_pred HHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHH-HH-hcccchhhhhhhHHHHHHHHHHHH
Confidence 2222211 1322 4443 45556666555 57788888887 34 356677788777889999999999
Q ss_pred HHHHHHhCC
Q 005969 628 AEKIITTMP 636 (667)
Q Consensus 628 A~~~~~~m~ 636 (667)
|.+.+++..
T Consensus 678 ~~~~~~~~~ 686 (700)
T KOG1156|consen 678 ALACLNNAE 686 (700)
T ss_pred HHHHHHhhh
Confidence 999888873
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.3e-06 Score=83.01 Aligned_cols=604 Identities=13% Similarity=0.116 Sum_probs=317.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccC
Q 005969 11 SIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHG 89 (667)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 89 (667)
.++..|+..|.+++++-. ..+.|.+||...+ ++ ..+.+++.+.+....+.... +.....+.+...+...+
T Consensus 486 KVi~cfAE~Gqf~KiilY---~kKvGyTPdymfl---Lq~l~r~sPD~~~qFa~~l~Q~~---~~~~die~I~DlFme~N 556 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILY---AKKVGYTPDYMFL---LQQLKRSSPDQALQFAMMLVQDE---EPLADIEQIVDLFMELN 556 (1666)
T ss_pred HHHHHHHHhcchhHHHHH---HHHcCCCccHHHH---HHHHHccChhHHHHHHHHhhccC---CCcccHHHHHHHHHHHH
Confidence 345555555555554432 3456788876544 33 33456777777777666644 12222233334444444
Q ss_pred ChhHHHHhhccCCC---------------------C------------CchhHHHHHHHHHhCCChHHHHHHHHHHHHC-
Q 005969 90 CLDEVVSVFEDMPR---------------------K------------SLVTWNSIVSIFGKHGFVEDCMFLFCELVRS- 135 (667)
Q Consensus 90 ~~~~a~~~~~~~~~---------------------~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 135 (667)
....+..++-...+ | +..-+..+.+.|.++|-..+|++.+..+..-
T Consensus 557 ~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIK 636 (1666)
T KOG0985|consen 557 LIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIK 636 (1666)
T ss_pred hhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHH
Confidence 44443333322111 1 1123566778888999999999888776421
Q ss_pred -CCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC----------
Q 005969 136 -EVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI---------- 204 (667)
Q Consensus 136 -~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 204 (667)
-+......=-.-+-.+...-.++.+.+.+..|...++..+..+.-.+..-|...=..+...++|+....
T Consensus 637 R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgS 716 (1666)
T KOG0985|consen 637 RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGS 716 (1666)
T ss_pred HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHH
Confidence 000000000001223333446788899999999999888888877777777777667777777777652
Q ss_pred -----CCchhHHHHHHHHHccCChhHHHHHHHHh------------HhCCc--------CCChhhHHHHHHHhhccCChh
Q 005969 205 -----RDVVSWNTIIGALAESENFGKALELYLRM------------SVDIV--------FPNQTTFVYVINSCAGLQNSI 259 (667)
Q Consensus 205 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m------------~~~g~--------~p~~~t~~~ll~~~~~~~~~~ 259 (667)
.|....--.|.+.++.|++.+..++-++- ++... .-|.+.|..=+-.|.-.++..
T Consensus 717 ivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~ 796 (1666)
T KOG0985|consen 717 IVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQ 796 (1666)
T ss_pred HhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHH
Confidence 34444556677888888888777664431 00000 001111111111111111111
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCC
Q 005969 260 LGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQLGY 338 (667)
Q Consensus 260 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~ 338 (667)
+-.+++-+ +.++.-.+.+...|++ ....++..+-+-.. -+....-+-|..-.-+.++.. -+.+++...+.|.
T Consensus 797 kyIE~yVQ--kvNps~~p~VvG~LLD----~dC~E~~ik~Li~~-v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~ 869 (1666)
T KOG0985|consen 797 KYIEIYVQ--KVNPSRTPQVVGALLD----VDCSEDFIKNLILS-VRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS 869 (1666)
T ss_pred HHHHHHHh--hcCCcccchhhhhhhc----CCCcHHHHHHHHHH-HhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC
Confidence 11111111 0111111112222221 11111111100000 011112222333333444444 4444555555443
Q ss_pred CCCHhhHHHHHHHhhhhhhh--------------HHHHHHHHh-------------------cCcchhhhHHHHHHHHHh
Q 005969 339 RPNEFTFSHVLRSSLAFQLL--------------QLHCLIIRM-------------------GYENYEYVLGSLMTSYAK 385 (667)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~ 385 (667)
.|..|++++-+-+.....- .+-+...++ ++....+.|....+-+.+
T Consensus 870 -~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~ 948 (1666)
T KOG0985|consen 870 -QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVE 948 (1666)
T ss_pred -cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHh
Confidence 2444555444332211111 000011111 111122334444444455
Q ss_pred hCCHHHHHHHHHhc----------------CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC-CCCc-----chHHHHH
Q 005969 386 SGLISDALAFVTAL----------------NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE-RPDI-----VSWNIVI 443 (667)
Q Consensus 386 ~~~~~~a~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~-----~~~~~li 443 (667)
..+.+--.+++.+- ....++........++...+-..+-+++++++. ++++ ..-|.|+
T Consensus 949 R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLi 1028 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLI 1028 (1666)
T ss_pred ccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHH
Confidence 55554444443221 122344445566667777777777777777765 3322 2234444
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh
Q 005969 444 AACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI 523 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 523 (667)
-...+. +..++++..+++-.-. .|+ +...+...+-.++|..+|++... +....+.|+. .-+..
T Consensus 1029 LtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~------n~~A~~VLie---~i~~l 1091 (1666)
T KOG0985|consen 1029 LTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDM------NVSAIQVLIE---NIGSL 1091 (1666)
T ss_pred HHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcc------cHHHHHHHHH---HhhhH
Confidence 443333 3455566666554322 222 22334556667888888876532 4445555554 34678
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh
Q 005969 524 GSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSY 603 (667)
Q Consensus 524 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (667)
+.|.+.-++..+|. .|+.+..+-.+.|.+.+|++-|-+ .-|+..|.-+++...+.|.|++-..++... ++.
T Consensus 1092 dRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~Ma-Rkk 1162 (1666)
T KOG0985|consen 1092 DRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMA-RKK 1162 (1666)
T ss_pred HHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHH-HHh
Confidence 88888888887764 588899999999999999887654 346789999999999999999999999877 554
Q ss_pred CCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHhhh
Q 005969 604 GVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 604 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 663 (667)
.-.|... ..|+-+|++.++..+-++++. -|+......+..-|.-.|..+-|+..
T Consensus 1163 ~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1163 VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 5555554 578999999999888766653 35555555555556666655555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-08 Score=93.88 Aligned_cols=194 Identities=10% Similarity=0.054 Sum_probs=149.3
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+.+.|.+.++...+.. |.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence 3456677788888899999999988887653 3345677777888888899999999988888765 335677778888
Q ss_pred HHHhcCChHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 516 MYGKCGSIGSSVKIFNEMTD-----RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
.+...|++++|.+.++...+ .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 88888999999988888763 123466667788888899999999999888752 224567788888888899999
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 591 EGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+|...+++.... .+.+...+..+...+...|+.++|.++.+.+
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999988444 3445566777788888888999888887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-08 Score=87.47 Aligned_cols=145 Identities=9% Similarity=0.012 Sum_probs=61.3
Q ss_pred HhhccCChhHHHHhhccCCC---CCchhHHH-HHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHH
Q 005969 84 LYGRHGCLDEVVSVFEDMPR---KSLVTWNS-IVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEF 159 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 159 (667)
-+....++..|+.+++.-.. ......+. +...+-..|++++|...+..+.+.. .|+......|.....-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 34445566666666554322 11111111 2223344566666666666555432 2344444444444444555555
Q ss_pred HHHHHHHHHHhcCCCchHHH-HHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhC
Q 005969 160 GEQIHGLVIKNGFDYELLVA-NSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVD 236 (667)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 236 (667)
|.++-... |+.... ..|++...+.|+-++-..+-+.+... ..---++.......-.+.+|+++|.+....
T Consensus 110 A~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 110 AKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55544332 222222 23333334444444443333333211 111112222222333455666666665543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-08 Score=93.77 Aligned_cols=190 Identities=9% Similarity=0.003 Sum_probs=145.0
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC 485 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 485 (667)
..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc
Confidence 3344455555555555556655432 234566777888888999999999999888754 345567777888888999
Q ss_pred ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHH
Q 005969 486 NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFR 562 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~ 562 (667)
++++|.+.++...+....+.....+..+...+...|++++|...+++..+ | +...+..+...+...|++++|...++
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999887543333556777788889999999999999988763 3 45678888899999999999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 563 EMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 563 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
+..+. .+.+...+..+...+...|+.++|..+++.+.
T Consensus 194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 194 RYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99886 34456677788888889999999999988873
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-06 Score=81.25 Aligned_cols=171 Identities=12% Similarity=0.096 Sum_probs=103.9
Q ss_pred hHHHHHHhcCCCCC-cchHHHHHHHHHH--cCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChhhHHHHHH-
Q 005969 422 NETVKLLSQLERPD-IVSWNIVIAACAH--NGDYKEVLELFKYMRAARIYPD--NYTFVSLLSACSKLCNLALGSSLHG- 495 (667)
Q Consensus 422 ~~a~~~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~- 495 (667)
+.+.++-....... ...+.+++....+ ......|..++...-+. .|. ....-.++......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33333444444322 2334444443322 22456666666666553 233 3344455566677888888888877
Q ss_pred -------HHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC------CChh----hHHHHHHHHHhCCChHHHH
Q 005969 496 -------LIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD------RNVI----TWTALISALGLNGFAQRAL 558 (667)
Q Consensus 496 -------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~----~~~~li~~~~~~~~~~~A~ 558 (667)
.+.+.+. .+.+..+++..|.+.++.+.|..++.+..+ +... ++.-+...-.+.|+.++|.
T Consensus 402 ~~~~~~ss~~~~~~---~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 402 FLESWKSSILEAKH---LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred Hhhhhhhhhhhhcc---ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 3444332 456677778888888877777777766542 2222 3333344445678999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 559 EKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 559 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.+++++.+.. ++|..+...++.+|++. +++.|..+-..+
T Consensus 479 s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 479 SLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999998852 56777888888888876 567777775544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-06 Score=81.75 Aligned_cols=450 Identities=13% Similarity=0.025 Sum_probs=223.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHH--HHH--HHh
Q 005969 113 VSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSL--VNM--YFQ 188 (667)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~--~~~ 188 (667)
++-+...|++++|....+++...+ +-+...+..-+-++.+.+.++.|..+.+.-.. ..+++.. =.+ ..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 455666777888888888777654 44455566666677777777777744432211 0111111 222 335
Q ss_pred cCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHH-hhccCChhHHHHHHHH
Q 005969 189 CAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINS-CAGLQNSILGKSIHAK 267 (667)
Q Consensus 189 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~ 267 (667)
.+..++|...++....-|......-...+.+.|++++|+++|+.+..++..- +...+++ |...+....+ +.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd----~d~~~r~nl~a~~a~l~~----~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD----QDEERRANLLAVAAALQV----QL 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHhhhH----HH
Confidence 6667777776664444444444444556666677777777777665553221 1111111 0000000000 01
Q ss_pred HHHhcCCCCchHHHHH---HHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHcCCCC--CH
Q 005969 268 VIKNALECDVFVGSAL---VDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRP--NE 342 (667)
Q Consensus 268 ~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~--~~ 342 (667)
+......| ..+|..+ ...++..|++.+|+++++.... +-.+-...+-.- +.
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~-----------------------~~~e~l~~~d~~eEei 219 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALR-----------------------ICREKLEDEDTNEEEI 219 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHH-----------------------HHHHhhcccccchhhH
Confidence 11111111 1122222 2233345555555555443210 000000000000 00
Q ss_pred hhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhh---
Q 005969 343 FTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNR--- 417 (667)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~--- 417 (667)
..-...++ -.+...+-..|+.++|.++|... ..+++........+-+..
T Consensus 220 e~el~~Ir--------------------------vQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~ 273 (652)
T KOG2376|consen 220 EEELNPIR--------------------------VQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSK 273 (652)
T ss_pred HHHHHHHH--------------------------HHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhcc
Confidence 00000010 14555677889999999999887 455555444333332221
Q ss_pred cCChh--HHHHHHhcCCCCCc--------------chHH-HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005969 418 TGQYN--ETVKLLSQLERPDI--------------VSWN-IVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480 (667)
Q Consensus 418 ~~~~~--~a~~~~~~~~~~~~--------------~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 480 (667)
..++- .+...++....... ...| .++..|. +..+.+.++-.... +..|. ..+..++..
T Consensus 274 d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~ 348 (652)
T KOG2376|consen 274 DQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQE 348 (652)
T ss_pred ccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHH
Confidence 11111 12222222221111 1111 1222221 11222222221111 12233 334444444
Q ss_pred Hhc--cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHH--------hcCC--CChhhHHHHHHHH
Q 005969 481 CSK--LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFN--------EMTD--RNVITWTALISAL 548 (667)
Q Consensus 481 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~--~~~~~~~~li~~~ 548 (667)
+.+ ......+.+++....+..... .....-..+......|+++.|.+++. .+.+ ..+.+...+...+
T Consensus 349 ~t~~~~~~~~ka~e~L~~~~~~~p~~-s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~ 427 (652)
T KOG2376|consen 349 ATKVREKKHKKAIELLLQFADGHPEK-SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALY 427 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHhccCCch-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHH
Confidence 332 224566677777666654222 34556667788888999999999988 3332 2334555566666
Q ss_pred HhCCChHHHHHHHHHHHHc--CCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 549 GLNGFAQRALEKFREMEFL--GFKPD----RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 549 ~~~~~~~~A~~~~~~~~~~--g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
.+.++.+.|..++.+.... .-.+. ..++..+...-.+.|.-++|..+++++.+. .++|..+...++.+|++.
T Consensus 428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 428 YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc
Confidence 7777766666666665431 01122 224444555556779999999999999654 578888999999999876
Q ss_pred CChHHHHHHHHhCC
Q 005969 623 GHLKEAEKIITTMP 636 (667)
Q Consensus 623 g~~~~A~~~~~~m~ 636 (667)
+.+.|..+-..+.
T Consensus 506 -d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 506 -DPEKAESLSKKLP 518 (652)
T ss_pred -CHHHHHHHhhcCC
Confidence 5788888887774
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-07 Score=80.38 Aligned_cols=201 Identities=12% Similarity=0.109 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc-------CChH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC-------GSIG 524 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~ 524 (667)
-+.|++++--+.+. -|. .-..|+-.|.+.+++.+|..+.+++. |.++.-|-.-.-.+... .+..
T Consensus 270 gEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~-----PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLD-----PTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred CccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcC-----CCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 45555555444431 222 12234445778888888877766542 32333332222222222 2355
Q ss_pred HHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 525 SSVKIFNEMTD-----RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 525 ~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
-|.+.|+-..+ ..+.--.++..++.-..++++++.++..+..- +..|...--.+.++++..|.+.+|.++|-++
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 56677765542 12233445556666666778888888877775 2333333344778888888888888888776
Q ss_pred HHhhCCCCCcchhH-HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHhhhh
Q 005969 600 NRSYGVEPEMDHYH-CVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTF-LEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 600 ~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~ 664 (667)
....+ .+..+|. .|.++|.+.|+.+-|++++-++.-..+..+.-.+ -+.|.+++.+=.|..++
T Consensus 420 -s~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 420 -SGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred -cChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33122 3445554 4677788888888888888888633344443333 34477777665554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-06 Score=83.43 Aligned_cols=208 Identities=13% Similarity=0.050 Sum_probs=123.8
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHC-CC--------CCCch-hHhHhhccCCccchhhHHHHHHHHHhCCCCCC
Q 005969 5 NVVSFNSIISAYSRCGYVEDALRMFLYMINR-GF--------EPTQF-TFGGLLSCDSLNPVEGAQLQASVLKNGLFCAD 74 (667)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~--------~p~~~-~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~ 74 (667)
+...|..+.+.|.+.++++-|.-.+-.|... |. .|+.. .--.+++..-+-.++|..++.+..+.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D----- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD----- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence 4567999999999999999998888888652 21 12211 111122222236778888888776654
Q ss_pred hhHHhhHHHHhhccCChhHHHHhhccCCCCC-chhHHHHHHHHHhCCChHHHHHHHHHHH----------HCC-------
Q 005969 75 AFVGTALLGLYGRHGCLDEVVSVFEDMPRKS-LVTWNSIVSIFGKHGFVEDCMFLFCELV----------RSE------- 136 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~----------~~~------- 136 (667)
.|=+.|-..|.+++|.++.+.-.+-. ..+|..-..-+-..++.+.|++.|++.- ...
T Consensus 831 -----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 831 -----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY 905 (1416)
T ss_pred -----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence 44567778899999999987654422 2367667777777888999998887631 110
Q ss_pred --CcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHH
Q 005969 137 --VALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTII 214 (667)
Q Consensus 137 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 214 (667)
-.-|...|.---.-+-..|+.+.|..++.... -|-.++...+-.|+.++|-++-++-. |...+..+.
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhla 974 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLA 974 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHH
Confidence 00111222222222334444444444444332 23445555555666666666655433 445555666
Q ss_pred HHHHccCChhHHHHHHHHh
Q 005969 215 GALAESENFGKALELYLRM 233 (667)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~m 233 (667)
+.|-..|++.+|..+|.+.
T Consensus 975 R~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 6777777777777777654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-08 Score=102.41 Aligned_cols=241 Identities=10% Similarity=-0.059 Sum_probs=126.3
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhh---------ccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCC
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYG---------RHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGF 121 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 121 (667)
+.+.|...+++.++.. |.+...+..+..+|. ..+++++|...+++..+ | +...|..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4556666666666554 333444443333322 22346666666666543 2 34455556566666677
Q ss_pred hHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhcc
Q 005969 122 VEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKD 201 (667)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 201 (667)
+++|+..|++..+.+ +.+...+..+...+...|+.++|...++...+.+.. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777766643 223445555666666667777777777776665432 222223333345556667777666665
Q ss_pred CC---CC-CchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHH-HhhccCChhHHHHHHHHHHHhcC-CC
Q 005969 202 VE---IR-DVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVIN-SCAGLQNSILGKSIHAKVIKNAL-EC 275 (667)
Q Consensus 202 ~~---~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~-~~ 275 (667)
.. .| +...+..+...+...|++++|...+.++... .|+..+....+. .+...| +.+...++.+.+..- .+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 43 12 2334555566666777777777777665443 344433333333 345555 355555555544321 11
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHhccCC
Q 005969 276 DVFVGSALVDFYAKCDNLEGAHLCFSEISN 305 (667)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (667)
..... +-..+.-.|+-+.+..+ +++.+
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 11111 23334445555555544 55554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-07 Score=92.96 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=61.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC---CCCcc-hHHHHHHHHHHcCCh
Q 005969 377 GSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE---RPDIV-SWNIVIAACAHNGDY 452 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~-~~~~li~~~~~~g~~ 452 (667)
+.|..+|.+.|++++|...++ .|.++++... .+.+. .++.+...++..+++
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e-------------------------~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCE-------------------------RALEIYEKLLGASHPEVAAQLSELAAILQSMNEY 341 (508)
T ss_pred HHHHHHHhccCChHHHHHHHH-------------------------HHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch
Confidence 477788999999999999665 4555666532 22222 355667778888899
Q ss_pred hHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHhccCChhhHHHHHHHHHH
Q 005969 453 KEVLELFKYMRAA---RIYPD----NYTFVSLLSACSKLCNLALGSSLHGLIKK 499 (667)
Q Consensus 453 ~~A~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 499 (667)
++|..++....+. -+.++ ..+++.|...|...|++++|.++++.+..
T Consensus 342 Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 342 EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9998888765432 11122 13455555556666666666655555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-05 Score=80.73 Aligned_cols=95 Identities=12% Similarity=0.089 Sum_probs=65.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhHhCCcCCC-hhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 005969 210 WNTIIGALAESENFGKALELYLRMSVDIVFPN-QTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYA 288 (667)
Q Consensus 210 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (667)
+.-+...|-..|++++|++++++..+. .|+ ...|..-.+.+.+.|++.+|...++...+.... |...-+-....+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 344455667778888888888777665 455 344555555577778888888777777766533 6666667777777
Q ss_pred hcCChHHHHHHHhccCCCC
Q 005969 289 KCDNLEGAHLCFSEISNKN 307 (667)
Q Consensus 289 ~~g~~~~a~~~~~~~~~~~ 307 (667)
+.|++++|.+++.....++
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 8888888887776665544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.4e-06 Score=80.79 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=50.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhh
Q 005969 543 ALISALGLNGFAQRALEKFREMEFLGFKPDRV-ALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVR 621 (667)
Q Consensus 543 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (667)
.++..+-..|+++.|..+++....+ .|+.+ .|..=.+.+...|++++|..++++. ++ --.||..+-..-..-..+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea-~e-lD~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEA-QE-LDTADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHH-Hh-ccchhHHHHHHHHHHHHH
Confidence 4455666666666666666666654 44432 4444455566666666666666666 33 123444444344555556
Q ss_pred cCChHHHHHHHHhC
Q 005969 622 YGHLKEAEKIITTM 635 (667)
Q Consensus 622 ~g~~~~A~~~~~~m 635 (667)
+++.++|.++....
T Consensus 452 An~i~eA~~~~skF 465 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKF 465 (700)
T ss_pred ccccHHHHHHHHHh
Confidence 66666666665555
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.8e-06 Score=76.52 Aligned_cols=261 Identities=11% Similarity=0.054 Sum_probs=188.9
Q ss_pred hhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHH
Q 005969 372 YEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAAC 446 (667)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 446 (667)
+......+.+.+...|+.++|...|+.. -.|-+........-.+.+.|++++...+...+-. .....|-.-....
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 3344467888888899999999988877 4444555555666667788888888777776653 2333444444555
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
...++++.|+.+-++.++.. +-+...|-.--..+...++++.|.-.|+...... |.+..+|.-|++.|...|++.+|
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhchHHHH
Confidence 56788999999988887642 2233344444455778899999999999888764 55889999999999999999998
Q ss_pred HHHHHhcC---CCChhhHHHHH-HHHH-hCCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 527 VKIFNEMT---DRNVITWTALI-SALG-LNGFAQRALEKFREMEFLGFKPDR-VALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 527 ~~~~~~~~---~~~~~~~~~li-~~~~-~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
.-+-+... ..+..+...+. ..+. ....-++|.+++++-.. +.|+- ...+.+...|...|+..++..++++..
T Consensus 388 ~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 388 NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 77666443 23444444442 2222 22335789888888777 57874 467788888999999999999999774
Q ss_pred HhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 005969 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPN 640 (667)
Q Consensus 601 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~ 640 (667)
. ..||....+.|.+.+...+.+.+|++.|... .+.|+
T Consensus 466 ~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 466 I---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred h---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 3 5789999999999999999999999988766 44554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.2e-08 Score=100.71 Aligned_cols=143 Identities=10% Similarity=-0.070 Sum_probs=61.0
Q ss_pred hhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHH
Q 005969 421 YNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLI 497 (667)
Q Consensus 421 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 497 (667)
+++|...+++..+ .+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|+.++|...++.+
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445444444432 122334444444444555555555555554432 112333444444445555555555555555
Q ss_pred HHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 498 KKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRN-VITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 498 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
.+.... ++..+..+...+...|++++|...+++.. .|+ ...+..+..++...|+.++|...++++..
T Consensus 399 l~l~P~--~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 399 LKLDPT--RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HhcCCC--ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 444311 12222222223333445555555544432 121 22233444444455555555555544433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-06 Score=85.22 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 440 NIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 440 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
.-+.+.|...|++++|++.+++.+++ .|+ ...|..-.+.+-..|++.+|.+.++..+... +.|...-+-.+..+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHH
Confidence 44566677788888888888887775 455 4566666777778888888888888877765 226666666777777
Q ss_pred hcCChHHHHHHHHhcCCCChh----------hH--HHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 519 KCGSIGSSVKIFNEMTDRNVI----------TW--TALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~~~~~~----------~~--~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
+.|++++|.+++....+++.. .| .....+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888888887777654311 12 2235677778887777776666544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-07 Score=78.23 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=167.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
...|.-+|...|+...|..-+++..+.. +-+..++..+...|.+.|..+.|.+.+++..... |.+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHH
Confidence 4456778999999999999999999863 3345688889999999999999999999998875 557889999999999
Q ss_pred hcCChHHHHHHHHhcC-CCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHH
Q 005969 519 KCGSIGSSVKIFNEMT-DRN----VITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A 592 (667)
..|++++|...|+... .|+ ..+|..+.-+..+.|+.+.|.+.|++..+. .|+ +.+.-.+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999876 443 458889999999999999999999999985 554 56788889999999999999
Q ss_pred HHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 005969 593 MELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTF 647 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 647 (667)
..+++.. .. +..++..+...-|+.-.+.|+.+.|.++=..+. ..|...-+.+.
T Consensus 193 r~~~~~~-~~-~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 193 RLYLERY-QQ-RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHH-Hh-cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 9999998 45 334889999889999999999988887766663 45655555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-08 Score=87.87 Aligned_cols=219 Identities=11% Similarity=0.030 Sum_probs=96.1
Q ss_pred HHHHHhhcCChhHHHHHHhcCC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCCh
Q 005969 411 IAGIYNRTGQYNETVKLLSQLE--RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTF-VSLLSACSKLCNL 487 (667)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~ 487 (667)
+..+|.+.|-+.+|++.|+... .|-+.||-.|-.+|.+..++..|+.++.+-.+. .|-.+|| .-+.+.+-..++.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhH
Confidence 3333444444444444443332 244444444444455545555555544444432 2333322 2233334444444
Q ss_pred hhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 005969 488 ALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREM 564 (667)
Q Consensus 488 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 564 (667)
+.|.++++...+.. +.+.....++...|.-.++++-|.+.++++.+ .+...|+.+.-+|.-.++++-++.-|++.
T Consensus 307 ~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 44555554444442 22334444444444444455555555544432 23344444444444455555555555554
Q ss_pred HHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 565 EFLGFKPD--RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 565 ~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
...--.|+ ...|-.|.......||+..|.+.|+-.... -......++.|.-.-.+.|++++|..+++..
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 44332333 223444444444455555555555444211 2223344555554445555555555555444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-08 Score=87.09 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=185.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CCcchH-HHHHHHHHHcCCh
Q 005969 377 GSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PDIVSW-NIVIAACAHNGDY 452 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~li~~~~~~g~~ 452 (667)
+.+.+.|.+.|.+.+|.+.++.. ...+.+.+|..+..+|.+..+++.|..++.+..+ |-.+|| .-+...+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 47889999999999999999876 8889999999999999999999999999998774 544444 3455667778999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHh
Q 005969 453 KEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNE 532 (667)
Q Consensus 453 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 532 (667)
++|.++|+...+.. +.+......+...|.-.++++.|..++..+...|.. ++..|+.+.-.|...+++|-++.-|++
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 99999999988753 345556667777888899999999999999999965 688999999999999999999888886
Q ss_pred cC----CCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 533 MT----DRN--VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 533 ~~----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.. +|+ ...|-.+.......|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++..
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 65 344 3578888888899999999999999988763 334668999988889999999999999988
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-05 Score=77.10 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-cchhHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-MDHYHCVVD 617 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~ 617 (667)
.|......+.+.++.++|...+.+.... .| ....|......+...|.+.+|.+.|.... -+.|+ +.+..++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 3444556677788888888888887764 44 45577777778888999999999998763 34454 567889999
Q ss_pred HHhhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHhhhhhcC
Q 005969 618 LLVRYGHLKEAEK--IITTM-PFPP-NALIWRTFLEGCQRCRIAKYDTLNSTKC 667 (667)
Q Consensus 618 ~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 667 (667)
++.+.|+..-|.. ++.++ ++.| +...|.-+...+.+.||.++|..+++.|
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999998777777 77776 4444 6899999999999999999998877653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=92.31 Aligned_cols=189 Identities=11% Similarity=0.005 Sum_probs=91.4
Q ss_pred HHHHHhccCChhhHHHHHHHHHHh-----CCCCC-chhHHhHHHHHHHhcCChHHHHHHHHhcCC----------CChh-
Q 005969 477 LLSACSKLCNLALGSSLHGLIKKT-----EIISS-DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD----------RNVI- 539 (667)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~- 539 (667)
+...|...+++++|..+|+++..- |...| -..+++.|..+|.+.|++++|...+++..+ |.+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 344455555555555555544321 11111 123444445555555555555554444331 1111
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhh---CC--CC
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFL---GFKPD----RVALIAVLTACRHGGLVREGMELFERMNRSY---GV--EP 607 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~--~~ 607 (667)
.++.+...|...+++++|..++++..+. -..++ ..++..|.+.|...|++++|.+++++++... +. .+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3344455555556666666665554331 11121 2356666666666666666666666554321 11 11
Q ss_pred -CcchhHHHHHHHhhcCChHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCChhHHhhhhh
Q 005969 608 -EMDHYHCVVDLLVRYGHLKEAEKIITTMP--------FPPN-ALIWRTFLEGCQRCRIAKYDTLNST 665 (667)
Q Consensus 608 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--------~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 665 (667)
....++.|...|.+.++..+|.++|.+.. ..|+ ..+|.-|...|.+.|+.|.|....+
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 12345556666666666665555555431 2222 3455566666666666666655543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.9e-06 Score=74.80 Aligned_cols=259 Identities=8% Similarity=-0.020 Sum_probs=191.2
Q ss_pred CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHH---HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 005969 400 NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIV---IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVS 476 (667)
Q Consensus 400 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 476 (667)
..+.+......+..++...|+.++|+..|++..-.|+.+...| .-.+.+.|+.+....+...+.... .-....|-.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 5677788888999999999999999999999886555544332 233457888888888887776532 112222222
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCC
Q 005969 477 LLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGF 553 (667)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~ 553 (667)
-........+.+.|..+-++..+.+ +.+...+-.-..++...+++++|.-.|+... .| +..+|..|+.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 2333445678888998888888775 3355666666678888999999999998766 44 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHH-HHHh-ccCCHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHhhcCChHHHHH
Q 005969 554 AQRALEKFREMEFLGFKPDRVALIAVL-TACR-HGGLVREGMELFERMNRSYGVEPEM-DHYHCVVDLLVRYGHLKEAEK 630 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 630 (667)
+.+|.-+-+...+. ++.+..+...+. ..|. ...--++|.++++.-. .+.|+- .....+.+.+.+.|..+++..
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 99999998887774 344566666553 3443 3344578999988653 345553 456788889999999999999
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCChhHHhhhhh
Q 005969 631 IITTM-PFPPNALIWRTFLEGCQRCRIAKYDTLNST 665 (667)
Q Consensus 631 ~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 665 (667)
++++. ...||...-+.|...++..+....|...++
T Consensus 460 LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 460 LLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99987 578999999999999988887777654443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-05 Score=78.84 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=80.3
Q ss_pred HHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChhh
Q 005969 414 IYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN-YTFVSLLSACSKLCNLAL 489 (667)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~ 489 (667)
.+.+.++.++|..-+.+..+ .....|......+...|..++|.+.|..... +.|+. .+..++...+.+.|+...
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcch
Confidence 34444444444434433332 3344455555666677888888888887776 45554 477778888888887777
Q ss_pred HHH--HHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 490 GSS--LHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 490 a~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
+.. ++..+.+.+ |.+...|-.+...+.+.|+.++|.+.|+...
T Consensus 737 a~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 737 AEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 777 788887775 5578888888888888888888888888665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00018 Score=72.46 Aligned_cols=239 Identities=12% Similarity=0.041 Sum_probs=116.2
Q ss_pred ChhHHhhHH--HHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHC-C-------CcCChhh
Q 005969 74 DAFVGTALL--GLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRS-E-------VALTESS 143 (667)
Q Consensus 74 ~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~-------~~~~~~~ 143 (667)
|..+-.+++ ..|...|+.|.|.+-.+.++ +-..|..|.+.|.+..+.|-|.-++-.|... | .+-+..+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 333334443 34555566666655554443 3345556666666665555555555444321 0 1111122
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCC-CchhHHHHHHHHHccCC
Q 005969 144 FVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIR-DVVSWNTIIGALAESEN 222 (667)
Q Consensus 144 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~ 222 (667)
=..+.-.....|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-..- =..+|......+-..++
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 2222222335566666666666655432 2333444556666666655443321 11244444555555556
Q ss_pred hhHHHHHHHHhH----------hCC---------cCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHH
Q 005969 223 FGKALELYLRMS----------VDI---------VFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSAL 283 (667)
Q Consensus 223 ~~~a~~~~~~m~----------~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 283 (667)
.+.|++.|++-. ... -..|...|..--.-+-..|+.+.|+.+|+...+. -++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~---------fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY---------FSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh---------hhh
Confidence 666666555421 000 0112222222222233455666666665554432 445
Q ss_pred HHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHH
Q 005969 284 VDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELL 334 (667)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~ 334 (667)
++..|-.|+.++|.++-++- .|....-.+.+.|-..|+.. |...|.+.+
T Consensus 945 VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55556666666666665543 34444555666777777777 777766543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-06 Score=74.06 Aligned_cols=185 Identities=11% Similarity=-0.036 Sum_probs=154.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 005969 473 TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALG 549 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 549 (667)
+..-|.-.|.+.|+...|..-+++..+.. |.+..++..+...|.+.|+.+.|.+.|+...+ .+-...|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45556678999999999999999999985 55788999999999999999999999998763 36678899999999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHH
Q 005969 550 LNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEA 628 (667)
Q Consensus 550 ~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 628 (667)
..|++++|...|++....-.-|. +.||..+..+..+.|+.+.|...|++..+. .+-.+.....+.....+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999988433332 558999999999999999999999988544 333456678889999999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHh
Q 005969 629 EKIITTMP--FPPNALIWRTFLEGCQRCRIAKYDT 661 (667)
Q Consensus 629 ~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a~ 661 (667)
..++++.. ..++..+.-..|+--.+.||...+.
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH
Confidence 99999984 5578877777777788888877654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.4e-07 Score=84.10 Aligned_cols=250 Identities=14% Similarity=0.072 Sum_probs=160.4
Q ss_pred HHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHH
Q 005969 381 TSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLEL 458 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 458 (667)
+-+.-.|++..++.-.+.. ..+........+.+++...|+++.++.-+..-..|.......+...+...++-+.+..-
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHH
Confidence 3445567777777544411 11122334456777888888888776666555566666665555444433455556555
Q ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC
Q 005969 459 FKYMRAARIYPDNYTF-VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN 537 (667)
Q Consensus 459 ~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 537 (667)
+++....+..++..++ ......+...|+++.|.+++... . +.......+..|.+.++++.|.+.++.|.+.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~-~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------G-SLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------T-CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------C-cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5554433333233333 33334567789999998888642 2 67777888999999999999999999998532
Q ss_pred -hhhHHHHHHHHH----hCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchh
Q 005969 538 -VITWTALISALG----LNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHY 612 (667)
Q Consensus 538 -~~~~~~li~~~~----~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (667)
-.+...+..++. -.+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++.... -+-++.+.
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~L 238 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTL 238 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHH
Confidence 223333444332 334699999999998765 5678889999999999999999999999987433 34456677
Q ss_pred HHHHHHHhhcCCh-HHHHHHHHhCC-CCCC
Q 005969 613 HCVVDLLVRYGHL-KEAEKIITTMP-FPPN 640 (667)
Q Consensus 613 ~~l~~~~~~~g~~-~~A~~~~~~m~-~~p~ 640 (667)
..++.+....|+. +.+.+.+.+++ ..|+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 7788888888877 66788998885 4444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-05 Score=68.05 Aligned_cols=191 Identities=6% Similarity=-0.026 Sum_probs=132.5
Q ss_pred HhhHHHHhhccCChhHHHHhhccCCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHH-HHHHhcc
Q 005969 78 GTALLGLYGRHGCLDEVVSVFEDMPRK---SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVG-VIHGLSN 153 (667)
Q Consensus 78 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~ 153 (667)
+.+.+..+.+..++++|++++....++ +....+.+...|-...++..|-++++++-.. -|...-|.. -.+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 456666677888899999888776652 5556777777888888999999999988663 355554443 2355566
Q ss_pred cCchHHHHHHHHHHHHhcCCCchHHHHHHHHH--HHhcCChhHHHHhhccCC-CCCchhHHHHHHHHHccCChhHHHHHH
Q 005969 154 EQDLEFGEQIHGLVIKNGFDYELLVANSLVNM--YFQCAGIWSAEKMFKDVE-IRDVVSWNTIIGALAESENFGKALELY 230 (667)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 230 (667)
.+.+..|..+...|... +....-..-+.+ .-..+++..+..+.++.+ +.+..+.+.......+.|+++.|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 77778888887777542 111111111222 234677888888888887 466666666666677899999999999
Q ss_pred HHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 005969 231 LRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALE 274 (667)
Q Consensus 231 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 274 (667)
+...+-|---....|+..+..+ +.|+.+.|+...+++.++|++
T Consensus 168 qaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 8887765444456777766554 458889999999999888864
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-06 Score=81.65 Aligned_cols=214 Identities=9% Similarity=-0.117 Sum_probs=120.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC-CCCc--hhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccC
Q 005969 15 AYSRCGYVEDALRMFLYMINRGF-EPTQ--FTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHG 89 (667)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 89 (667)
.....+..+.++.-+.+++...- .|+. ..|..+-. ...++.+.|...+++.++.. |.+...|+.+...|...|
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCC
Confidence 44455778889999999987532 2222 11221111 33347777777777777765 556677777777777788
Q ss_pred ChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHH
Q 005969 90 CLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGL 166 (667)
Q Consensus 90 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 166 (667)
++++|...|+...+ | +..+|..+...+...|++++|++.|+...+.. |+..........+...++.++|...+..
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88888777777643 3 34466666677777778888888777776643 4332222222223345667777777765
Q ss_pred HHHhcCCCchHHHHHHHHHHHhcCChhHH--HHhhccC----C---CCCchhHHHHHHHHHccCChhHHHHHHHHhHhC
Q 005969 167 VIKNGFDYELLVANSLVNMYFQCAGIWSA--EKMFKDV----E---IRDVVSWNTIIGALAESENFGKALELYLRMSVD 236 (667)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~----~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 236 (667)
..... .++...+ .+.. ...|+...+ .+.+... + .+....|..+...+.+.|++++|...|++....
T Consensus 191 ~~~~~-~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44332 2222221 2222 223443322 2111111 1 112345666666777777777777777766654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-06 Score=78.17 Aligned_cols=203 Identities=11% Similarity=-0.054 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
..|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|+++.|...++...+.. |.+...+..+...
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 346666667777888888888888777743 2345677777777888888888888888877764 4356677777777
Q ss_pred HHhcCChHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMTD--RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGME 594 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (667)
+...|++++|.+.|+...+ |+..........+...++.++|.+.+.+.... ..|+... ..+ .....|+...+ +
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~-~~~--~~~~lg~~~~~-~ 216 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWG-WNI--VEFYLGKISEE-T 216 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccH-HHH--HHHHccCCCHH-H
Confidence 7788888888888877663 43321111122233456788888888665543 2333221 122 22234555443 3
Q ss_pred HHHHhHHhhCCCC-----CcchhHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHH
Q 005969 595 LFERMNRSYGVEP-----EMDHYHCVVDLLVRYGHLKEAEKIITTMP-F-PPNALIWRTF 647 (667)
Q Consensus 595 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l 647 (667)
.++.+.+.....+ ....|..+...+.+.|++++|...|++.. . .||.+-++..
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~ 276 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYA 276 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4444422211111 23467778888888888888888888762 3 3465555543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-08 Score=57.03 Aligned_cols=32 Identities=34% Similarity=0.603 Sum_probs=21.0
Q ss_pred CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 568 GFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 568 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
|+.||..||+.||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=81.48 Aligned_cols=145 Identities=15% Similarity=0.079 Sum_probs=92.2
Q ss_pred CChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----ccCChhhHHHHH
Q 005969 419 GQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACS----KLCNLALGSSLH 494 (667)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~ 494 (667)
|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ..++...|..+|
T Consensus 116 ~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 116 GDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp CHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3333333355543 34455566777888888888888888888764 333 33334444432 234678888888
Q ss_pred HHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCC
Q 005969 495 GLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFA-QRALEKFREMEFLGFK 570 (667)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~~A~~~~~~~~~~g~~ 570 (667)
+++.+.- ++++.+.+.+..++...|++++|.+++++..+ .+..+...++.+....|+. +.+.+++.++... .
T Consensus 191 ~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~ 266 (290)
T PF04733_consen 191 EELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--N 266 (290)
T ss_dssp HHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--T
T ss_pred HHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--C
Confidence 8876542 34777888888888888888888888887663 2445666667777777776 6677788887774 5
Q ss_pred CC
Q 005969 571 PD 572 (667)
Q Consensus 571 p~ 572 (667)
|+
T Consensus 267 p~ 268 (290)
T PF04733_consen 267 PN 268 (290)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00014 Score=64.21 Aligned_cols=343 Identities=13% Similarity=0.084 Sum_probs=155.9
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC--CCchhHHH-HHHHHHcc
Q 005969 144 FVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI--RDVVSWNT-IIGALAES 220 (667)
Q Consensus 144 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 220 (667)
+.+++..+.+..+++.|.+++..-.++. +.+....+.|...|-+..++..|-..++++.+ |...-|.. -..++.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4444444444455555555544444332 11334444555555555555555555555542 32223332 23566777
Q ss_pred CChhHHHHHHHHhHhCCcCCChhhHHHHHHH--hhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 005969 221 ENFGKALELYLRMSVDIVFPNQTTFVYVINS--CAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHL 298 (667)
Q Consensus 221 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 298 (667)
+.+.+|+.+...|... |+...-..-+.+ .-..+++..+..++++....| +..+.+.......+.|+.+.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8888888888777643 222222222222 223455555665555543221 33333344444556666666666
Q ss_pred HHhccCC----CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchh
Q 005969 299 CFSEISN----KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYE 373 (667)
Q Consensus 299 ~~~~~~~----~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 373 (667)
-|+...+ .....||..+..|.+ ++.+ |++...+..++|++.-+..-. -|...|+ |.
T Consensus 166 kFqaAlqvsGyqpllAYniALaHy~~-~qyasALk~iSEIieRG~r~HPElgI----------------Gm~tegi--Dv 226 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAHYSS-RQYASALKHISEIIERGIRQHPELGI----------------GMTTEGI--DV 226 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHhh-hhHHHHHHHHHHHHHhhhhcCCccCc----------------cceeccC--ch
Confidence 6665544 233445554444433 3333 666666666665543322100 0000011 10
Q ss_pred hhHHHHHHHHHhhCCHH-HHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC-----CCCcchHHHHHHHHH
Q 005969 374 YVLGSLMTSYAKSGLIS-DALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE-----RPDIVSWNIVIAACA 447 (667)
Q Consensus 374 ~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~ 447 (667)
... |+.. -+.. .-...++.-...+.+.++++.|.+.+..|+ +.|++|...+.-.-
T Consensus 227 rsv----------gNt~~lh~S--------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n- 287 (459)
T KOG4340|consen 227 RSV----------GNTLVLHQS--------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN- 287 (459)
T ss_pred hcc----------cchHHHHHH--------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-
Confidence 000 0000 0000 000122333334556677777777777776 24555543332211
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
-.+++....+-+.-+.+.. +-...||..++-.||+..-++.|-.++.+-......-.+...|+.|=.........++|+
T Consensus 288 ~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~ 366 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAF 366 (459)
T ss_pred ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHH
Confidence 1233444444444444432 223456667777777776666666665543222211123344443333333334555555
Q ss_pred HHHHh
Q 005969 528 KIFNE 532 (667)
Q Consensus 528 ~~~~~ 532 (667)
+-+..
T Consensus 367 KKL~~ 371 (459)
T KOG4340|consen 367 KKLDG 371 (459)
T ss_pred HHHHH
Confidence 54443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00011 Score=72.28 Aligned_cols=215 Identities=12% Similarity=0.062 Sum_probs=129.3
Q ss_pred CChhHHHHHHhcCCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 005969 419 GQYNETVKLLSQLER--PD-IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHG 495 (667)
Q Consensus 419 ~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 495 (667)
+..+.+.+.+..... |+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 94 GMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred cCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444445555554322 22 1233345567788999999999999998854 3445677778888889999999999999
Q ss_pred HHHHhCCCCCch--hHHhHHHHHHHhcCChHHHHHHHHhcCCCCh--hhHH------HHHHHHHhCCChHHHHHH--HHH
Q 005969 496 LIKKTEIISSDT--FVCNMLIDMYGKCGSIGSSVKIFNEMTDRNV--ITWT------ALISALGLNGFAQRALEK--FRE 563 (667)
Q Consensus 496 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~------~li~~~~~~~~~~~A~~~--~~~ 563 (667)
...+....+++. ..+..+...+...|++++|..++++...+.. .... .++.-+...|....+.++ +..
T Consensus 173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~ 252 (355)
T cd05804 173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLAD 252 (355)
T ss_pred hhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 887764322232 3455778888999999999999998763211 2111 223333444443333332 111
Q ss_pred HHHcCCC--CCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC--------CCcchhHHHHHHHhhcCChHHHHHHHH
Q 005969 564 MEFLGFK--PDRVALIAVLTACRHGGLVREGMELFERMNRSYGVE--------PEMDHYHCVVDLLVRYGHLKEAEKIIT 633 (667)
Q Consensus 564 ~~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (667)
....... ...........++...|+.+.|..+++.+... ... ......-...-++.+.|+.++|.+.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 253 YAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR-ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred HHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111111 11122235677788899999999999988443 211 012222233334458899999988887
Q ss_pred hC
Q 005969 634 TM 635 (667)
Q Consensus 634 ~m 635 (667)
..
T Consensus 332 ~a 333 (355)
T cd05804 332 PV 333 (355)
T ss_pred HH
Confidence 65
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0013 Score=68.05 Aligned_cols=248 Identities=10% Similarity=-0.035 Sum_probs=128.7
Q ss_pred HhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCC---cchHHHHHHHHHHcCChhHHHHH
Q 005969 384 AKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPD---IVSWNIVIAACAHNGDYKEVLEL 458 (667)
Q Consensus 384 ~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 458 (667)
...|++.-+...|-.. ..|.....|..+.-.+.+..+++.|...|...+..+ ...|--........|+.-++..+
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 5556666666665544 566667777778888888999999999998887533 34443333334456777777777
Q ss_pred HHHH--H--HcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh--------CCCCCchhHHhHHHHHHHhcCChHHH
Q 005969 459 FKYM--R--AARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT--------EIISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 459 ~~~m--~--~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
|..- . ..|-.|+..-+-.........|+.+.-....+.+... +..|.+...|.+.....-+.+..++|
T Consensus 907 faHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a 986 (1238)
T KOG1127|consen 907 FAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAA 986 (1238)
T ss_pred HHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHH
Confidence 7651 1 1222333332222222233445544333322222111 11344566777777777777777777
Q ss_pred HHHHHhcC-----CCChhhHHHH----HHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHH
Q 005969 527 VKIFNEMT-----DRNVITWTAL----ISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFE 597 (667)
Q Consensus 527 ~~~~~~~~-----~~~~~~~~~l----i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 597 (667)
..+..+.. +-+...|+.. .+.++..|.++.|..-+..... ..+..+...-+.. .-.++++++.+.|+
T Consensus 987 ~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe 1062 (1238)
T KOG1127|consen 987 LELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFE 1062 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHH
Confidence 77666544 2345555532 2334444555544332211110 0011111111111 33567777777777
Q ss_pred HhHHhhCCCCC-cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 598 RMNRSYGVEPE-MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 598 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+...-..-..+ ......+..+....+..+.|...+-+.
T Consensus 1063 ~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1063 QALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred HHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 66332122222 233455666666666677776665544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0001 Score=72.52 Aligned_cols=196 Identities=11% Similarity=-0.068 Sum_probs=123.7
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCchhHhHhhc---cCCccchhhHHHHHHHHHhCCCCCChhHHh-
Q 005969 5 NVVSFNSIISAYSRCGYVEDALRMFLYMINRGF-EPTQFTFGGLLS---CDSLNPVEGAQLQASVLKNGLFCADAFVGT- 79 (667)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 79 (667)
....|..+...+...|+.+.+...+....+... .++......+.. ...++++.|...+++.++.. |.|...+.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH
Confidence 344677777777788888888777777665422 122221111111 44458889999999888765 45554444
Q ss_pred --hHHHHhhccCChhHHHHhhccCCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhccc
Q 005969 80 --ALLGLYGRHGCLDEVVSVFEDMPR--KS-LVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNE 154 (667)
Q Consensus 80 --~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 154 (667)
.+.......+..+.+.+.++.... |+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 222222335666666666655322 22 2233345567788899999999999888754 33455667777788888
Q ss_pred CchHHHHHHHHHHHHhcC-CCch--HHHHHHHHHHHhcCChhHHHHhhccCC
Q 005969 155 QDLEFGEQIHGLVIKNGF-DYEL--LVANSLVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
|++++|...++...+... .++. ..|..+...+...|++++|.+.+++..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 888888888888776532 1222 234466777777888888888877754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.5e-08 Score=55.58 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=31.8
Q ss_pred CCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 604 GVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 604 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
|+.||..+|+.|+.+|++.|+.++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 899999999999999999999999999999984
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00048 Score=71.14 Aligned_cols=159 Identities=12% Similarity=0.033 Sum_probs=83.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Q 005969 108 TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGF-DYELLVANSLVNMY 186 (667)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 186 (667)
.|..|...|+.--+...|.++|+...+.+ .-+..........++...+++.|..+.-...+... ..-..-|..+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 55556666655556666666666665533 12344555566666666666666666222221110 00111222233334
Q ss_pred HhcCChhHHHHhhccCCC---CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHH--hhccCChhHH
Q 005969 187 FQCAGIWSAEKMFKDVEI---RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINS--CAGLQNSILG 261 (667)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a 261 (667)
.+.++...|..-|+...+ .|...|..+..+|.+.|++..|+++|.+...- .|+. +|...-.+ .+..|...++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 455566666666654432 35556666777777777777777777665542 3432 23222222 3455666666
Q ss_pred HHHHHHHHH
Q 005969 262 KSIHAKVIK 270 (667)
Q Consensus 262 ~~~~~~~~~ 270 (667)
...+..+..
T Consensus 650 ld~l~~ii~ 658 (1238)
T KOG1127|consen 650 LDALGLIIY 658 (1238)
T ss_pred HHHHHHHHH
Confidence 666665543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0017 Score=62.68 Aligned_cols=175 Identities=13% Similarity=0.066 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFN 531 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 531 (667)
.+.....+++....-..--..+|..+++...+..-+..|..+|.++.+.+..+-++..+++++.-|| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 5566666766655432222346777777778888889999999999988876667788888888777 467888999998
Q ss_pred hcCC--CChhh-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHHhhC--
Q 005969 532 EMTD--RNVIT-WTALISALGLNGFAQRALEKFREMEFLGFKPDR--VALIAVLTACRHGGLVREGMELFERMNRSYG-- 604 (667)
Q Consensus 532 ~~~~--~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-- 604 (667)
--.+ +|... -...+.-+...|+-..|..+|++....++.|+. ..|..++.-=..-|+...+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6542 44443 345677778888888999999999888777764 4899999988899999999999888765543
Q ss_pred CCCCcchhHHHHHHHhhcCChHH
Q 005969 605 VEPEMDHYHCVVDLLVRYGHLKE 627 (667)
Q Consensus 605 ~~~~~~~~~~l~~~~~~~g~~~~ 627 (667)
..+....-..+++.|.-.+...-
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccc
Confidence 34444445555666655554433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0027 Score=71.42 Aligned_cols=161 Identities=10% Similarity=-0.014 Sum_probs=90.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHH-----hH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAAR--IYPD--NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVC-----NM 512 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~ 512 (667)
+...+...|++++|...+.+..... ..+. ...+..+...+...|+.+.|.+.+...............+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 3444555677777777776654321 1121 2233444555666777777777777665431111010001 11
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCChh-------hHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HhHHHHHH
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTDRNVI-------TWTALISALGLNGFAQRALEKFREMEFL----GFKPD-RVALIAVL 580 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p~-~~~~~~li 580 (667)
.+..+...|+.+.|.+.+.....+... .+..+..++...|+.++|...+++.... |..++ ..+...+.
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 223444567778887777665532211 1234556677778888888887776553 22222 23555666
Q ss_pred HHHhccCCHHHHHHHHHHhHHh
Q 005969 581 TACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
.++...|+.++|...+.+....
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6777888888888888877443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.3e-06 Score=78.25 Aligned_cols=249 Identities=12% Similarity=0.080 Sum_probs=178.8
Q ss_pred HHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCc---chHHHHHHHHHHcCChhHH
Q 005969 381 TSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDI---VSWNIVIAACAHNGDYKEV 455 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A 455 (667)
.-+.+.|++.+|.-.|+.. ..|.+...+..|..+-...++-..|+..+.+..+.|+ .....|.-.|...|.-..|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3456788899999889887 7888889999999999999999999999988876444 4556666778888888999
Q ss_pred HHHHHHHHHcCCC-----C---CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH
Q 005969 456 LELFKYMRAARIY-----P---DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 456 ~~~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
...+++......+ + +...-.. ..+.....+....++|-.+........|+.+...|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999988654311 0 0000000 1122223334455556555555443358999999999999999999999
Q ss_pred HHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHh-
Q 005969 528 KIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV-ALIAVLTACRHGGLVREGMELFERMNRS- 602 (667)
Q Consensus 528 ~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~- 602 (667)
..|+... +| |...||.|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-....-
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999887 45 678999999999999999999999999999 689844 5566777899999999999888765321
Q ss_pred -hC------CCCCcchhHHHHHHHhhcCChHHHHHHHH
Q 005969 603 -YG------VEPEMDHYHCVVDLLVRYGHLKEAEKIIT 633 (667)
Q Consensus 603 -~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (667)
.+ ..++..+|.+|=.++.-.++.+-+.+...
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 11 11122456666655555666554544443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0045 Score=65.81 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchh
Q 005969 573 RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHY 612 (667)
Q Consensus 573 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (667)
......+++.+...|..+...+.++.+...+...|....|
T Consensus 582 ~~l~~~~~~~L~~~g~~~~l~~~~~~~~~~~~~~~e~~iW 621 (906)
T PRK14720 582 HKVNKYVFDSLYEEGKFDELNSLFKYVIKNYKEYPEAFIW 621 (906)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhccCccchhh
Confidence 4444556677777777777778888777776666665443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3e-05 Score=76.95 Aligned_cols=216 Identities=15% Similarity=0.108 Sum_probs=160.0
Q ss_pred CCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005969 401 IPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480 (667)
Q Consensus 401 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 480 (667)
.||-...-..+...+...|-...|..+|+++ ..|.-+|.+|+..|+..+|..+..+-.+ -+||+..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4444555566777777777777777787765 4667778888999988899888888777 37888888888887
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHH
Q 005969 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRA 557 (667)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A 557 (667)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ | -..+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777777787777765433 111222223346788888888886553 2 445777778888888888999
Q ss_pred HHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 558 LEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 558 ~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+.|..-.. ..|| ...||.+-.+|.+.|+-.+|...+++..+- + ..+..+|...+......|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 988888887 4776 458899999999999989999888888444 4 556667777888888889999998888877
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00023 Score=61.98 Aligned_cols=245 Identities=13% Similarity=0.077 Sum_probs=153.3
Q ss_pred HHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHH-HHH
Q 005969 381 TSYAKSGLISDALAFVTAL-NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEV-LEL 458 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~ 458 (667)
+-+.=.|++..++..-... ..+.....-..+.++|...|++.....-...-..+.......+......-++.++- .++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 3444456666666655544 23344445555666777777665544333333323333333333333333443333 344
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC-
Q 005969 459 FKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN- 537 (667)
Q Consensus 459 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 537 (667)
.+.+.......+......-...|+..++.+.|.+...... +......=+..+.+..+++-|.+.++.|.+-|
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 4455554444443444444455888899999988877621 34444444566777888999999999998754
Q ss_pred hhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhH
Q 005969 538 VITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 538 ~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (667)
..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|++.+.+....++...|++++|..++++...+ ..-++.+..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~ 245 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLA 245 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHH
Confidence 4466666666543 45688899999999875 6888999999999999999999999999988555 445567777
Q ss_pred HHHHHHhhcCChHHH-HHHHHhC
Q 005969 614 CVVDLLVRYGHLKEA-EKIITTM 635 (667)
Q Consensus 614 ~l~~~~~~~g~~~~A-~~~~~~m 635 (667)
.++.+-...|...++ .+.+..+
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHH
Confidence 777666667765443 3455555
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00067 Score=61.31 Aligned_cols=304 Identities=11% Similarity=0.019 Sum_probs=168.5
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHH---HHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHh
Q 005969 277 VFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALIL---GYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSS 352 (667)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~---~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~ 352 (667)
+.-.--+...+...|++.+|+.-|....+.|+..|-++.+ .|...|+.. |+.-+....+. +||-..-.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR------ 109 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR------ 109 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH------
Confidence 3334455666777888999999998888888888877654 366677777 77666665553 45433221
Q ss_pred hhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHHHHHhhcCChhHHHHHHhcC
Q 005969 353 LAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANIIAGIYNRTGQYNETVKLLSQL 431 (667)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 431 (667)
-.-...+.+.|.++.|..-|+.. ...|+..+-. .+..+.-..++-
T Consensus 110 ------------------------iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e~------- 155 (504)
T KOG0624|consen 110 ------------------------IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQEH------- 155 (504)
T ss_pred ------------------------HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHHHH-------
Confidence 01224567788888888877665 2222211110 000000000000
Q ss_pred CCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHh
Q 005969 432 ERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCN 511 (667)
Q Consensus 432 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 511 (667)
......+..+...|+...|+.....+.+- .+.|...|..-..+|...|++..|+.-++...+... .+...+-
T Consensus 156 -----~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~--DnTe~~y 227 (504)
T KOG0624|consen 156 -----WVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ--DNTEGHY 227 (504)
T ss_pred -----HHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--cchHHHH
Confidence 01112233444566777777777776663 244666666666677777777777666666555532 2444555
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC--CChh----hHHHH---------HHHHHhCCChHHHHHHHHHHHHcCCCCC--Hh
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMTD--RNVI----TWTAL---------ISALGLNGFAQRALEKFREMEFLGFKPD--RV 574 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l---------i~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~ 574 (667)
-+-..+...|+.+.++...++..+ ||.. .|..| +......+++.++++-.+...+. .|. ..
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~i 305 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMI 305 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccce
Confidence 555666666777777766666653 3322 12111 12234455666666666666654 333 22
Q ss_pred ---HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 575 ---ALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 575 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+..+..++...|++.+|++...+.. .+.|+ ..++..=..+|.-...+++|+.-|++.
T Consensus 306 r~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 306 RYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred eeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23344455556667777776666553 23443 566666666666666666666666555
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-05 Score=75.49 Aligned_cols=236 Identities=14% Similarity=0.036 Sum_probs=167.9
Q ss_pred CcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC--CCCcchHHHHHHHH
Q 005969 369 YENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE--RPDIVSWNIVIAAC 446 (667)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~ 446 (667)
++|-...-..+...+...|-...|..++++. ..+..++.+|...|+..+|..+..+.. +|+...|..+.+..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVL 467 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhc
Confidence 3444445556778888889999999988864 456678888888888888888876655 36777777777666
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ |....+|-.+.-+..+.+++..|
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHH
Confidence 5555577888887764432 11222222334678888888888877765 33577887888888888899988
Q ss_pred HHHHHhcC--CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh
Q 005969 527 VKIFNEMT--DRN-VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSY 603 (667)
Q Consensus 527 ~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (667)
.+.|.... +|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|.+.+.++..-.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88888776 564 4589999999999999999999999888876 3344556666666778889999998888875443
Q ss_pred CCCCCcchhHHHHHHHh
Q 005969 604 GVEPEMDHYHCVVDLLV 620 (667)
Q Consensus 604 ~~~~~~~~~~~l~~~~~ 620 (667)
....|..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 33335555555555544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00019 Score=76.61 Aligned_cols=217 Identities=10% Similarity=0.006 Sum_probs=132.7
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCC-------cchhHHHHHHHhhcCChhHHHHHHhcCCCC--CcchHHHHH
Q 005969 373 EYVLGSLMTSYAKSGLISDALAFVTALNIPRA-------VVPANIIAGIYNRTGQYNETVKLLSQLERP--DIVSWNIVI 443 (667)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li 443 (667)
...|-..|..+...++.++|.++.++.....+ ...|.++++.-..-|.-+...++|++..+- ....|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34555677777777888888887777622221 223444555555555666666677766642 224566677
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh
Q 005969 444 AACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI 523 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 523 (667)
..|.+.+..++|.++++.|.+. +.-....|...+..+.+.++-+.|..+++++.+.-..........-.+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7777777777777777777665 334556677777777777777777777776666522111233344445555666777
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhccCCHH
Q 005969 524 GSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDR--VALIAVLTACRHGGLVR 590 (667)
Q Consensus 524 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~ 590 (667)
+.+..+|+.... .-...|+.++..-.++|+.+.+..+|++....++.|.. ..|.-.+..=-+.|+-.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 777777776652 24556777777777777777777777777777666642 24455554444444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0042 Score=58.73 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=126.8
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHh-c---cCChhhHHHHHHHHHHhCCCC
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSL-------LSACS-K---LCNLALGSSLHGLIKKTEIIS 504 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------l~~~~-~---~~~~~~a~~~~~~~~~~~~~~ 504 (667)
+.+|..++....+.++...|.+.+.-+.- +.|+...-.-+ -+..+ . ..+...-..+|+.+....+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 34566677777777777777777776654 33443321111 11122 1 122334455566665554322
Q ss_pred CchhHHhHHH---HHHHhcCC-hHHHHHHHHhcCC---CChhhHHHHH----HHHHh---CCChHHHHHHHHHHHHcCCC
Q 005969 505 SDTFVCNMLI---DMYGKCGS-IGSSVKIFNEMTD---RNVITWTALI----SALGL---NGFAQRALEKFREMEFLGFK 570 (667)
Q Consensus 505 ~~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~~~~~~A~~~~~~~~~~g~~ 570 (667)
......|+ .-+.+.|. -++|.++++.+.+ .|...-|.+. ..|.+ ...+.+-+.+-+-+.+.|+.
T Consensus 376 --qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 376 --QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred --HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 22222333 33455565 7788899888773 3444333322 33322 23355555666666778888
Q ss_pred CC----HhHHHHHHHH--HhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 005969 571 PD----RVALIAVLTA--CRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIW 644 (667)
Q Consensus 571 p~----~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 644 (667)
|- ...-|.|.++ +...|++.++...-.-+ .+ +.|++.+|.-++-++....++++|.+++.+++ |+..++
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL-~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ 528 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL-TK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMR 528 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhH
Confidence 84 3355666655 46789999988776655 33 78999999999999999999999999999996 688888
Q ss_pred HHHHH
Q 005969 645 RTFLE 649 (667)
Q Consensus 645 ~~l~~ 649 (667)
++-++
T Consensus 529 dskvq 533 (549)
T PF07079_consen 529 DSKVQ 533 (549)
T ss_pred HHHHH
Confidence 76544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.6e-05 Score=69.27 Aligned_cols=183 Identities=14% Similarity=0.088 Sum_probs=110.8
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch-h
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN----YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT-F 508 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 508 (667)
.....+-.+...+...|++++|...|++.... .|+. .++..+..++.+.|+++.|...++.+.+.....+.. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 44556677777888889999999999888774 3432 356667778888889999999998888765322111 1
Q ss_pred HHhHHHHHHHhc--------CChHHHHHHHHhcCC--CChh-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHH
Q 005969 509 VCNMLIDMYGKC--------GSIGSSVKIFNEMTD--RNVI-TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALI 577 (667)
Q Consensus 509 ~~~~l~~~~~~~--------~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~ 577 (667)
.+..+...+... |+.++|.+.++.+.+ |+.. .+..+..... ... .. .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 344444445443 556667776666652 3221 1111110000 000 00 00012
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 578 AVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 578 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
.+...+.+.|++++|...+++....+.-.| ....+..++.++.+.|++++|.+.++.+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345567778888888888888765532222 34567778888888888888888777764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-06 Score=50.90 Aligned_cols=35 Identities=40% Similarity=0.787 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQ 41 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 41 (667)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999974
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0018 Score=72.75 Aligned_cols=221 Identities=8% Similarity=-0.101 Sum_probs=122.0
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCC------Cc--hHHHHHHHHHH
Q 005969 115 IFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFD------YE--LLVANSLVNMY 186 (667)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~ 186 (667)
.+...|+++.+...++.+.......++.........+...|+++++..++......--. +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456677666666655422111122222333344445678888888888776543111 11 12222333455
Q ss_pred HhcCChhHHHHhhccCCC----CCc----hhHHHHHHHHHccCChhHHHHHHHHhHhCCc---CC--ChhhHHHHHHHhh
Q 005969 187 FQCAGIWSAEKMFKDVEI----RDV----VSWNTIIGALAESENFGKALELYLRMSVDIV---FP--NQTTFVYVINSCA 253 (667)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p--~~~t~~~ll~~~~ 253 (667)
...|++++|...+++... .+. ...+.+...+...|++++|...+.+.....- .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678888888777765431 121 2344555566778888888888877654211 11 1223344445567
Q ss_pred ccCChhHHHHHHHHHHHh----cCCC---CchHHHHHHHHHHhcCChHHHHHHHhccCC------CC--cccHHHHHHHH
Q 005969 254 GLQNSILGKSIHAKVIKN----ALEC---DVFVGSALVDFYAKCDNLEGAHLCFSEISN------KN--IVSWNALILGY 318 (667)
Q Consensus 254 ~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~--~~~~~~li~~~ 318 (667)
..|+++.|...+++.... +... ....+..+...+...|++++|...+.+... +. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 788888888887766543 2111 122344455566677888888887776533 11 12233344455
Q ss_pred hcCCChH-HHHHHHHHHH
Q 005969 319 ASKSSPT-SIFLLIELLQ 335 (667)
Q Consensus 319 ~~~~~~~-a~~~~~~m~~ 335 (667)
...|+.+ |...+.+...
T Consensus 623 ~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 623 LARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 6778877 7777766543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00012 Score=67.08 Aligned_cols=182 Identities=13% Similarity=0.030 Sum_probs=126.8
Q ss_pred CCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CCc----chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH----
Q 005969 403 RAVVPANIIAGIYNRTGQYNETVKLLSQLER--PDI----VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNY---- 472 (667)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 472 (667)
.....+......+...|++++|...|+++.. |+. ..+..+..++...|++++|...++++.+.. |+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 3445566777888999999999999998764 332 356777888999999999999999998753 4322
Q ss_pred HHHHHHHHHhcc--------CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHH
Q 005969 473 TFVSLLSACSKL--------CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTAL 544 (667)
Q Consensus 473 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 544 (667)
++..+..++.+. |+.+.|.+.++.+.+.. |.+......+..... ..... ......+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~----------~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH----------HHHHHHH
Confidence 344445555544 67889999999998875 323333322221111 00000 0111245
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCC-CC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGF-KP-DRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
...+.+.|++++|+..+++..+..- .| ....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6678899999999999999988521 12 2468889999999999999999999988544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00052 Score=59.87 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCC-CcchHHHHHHHHHH----cCChhH
Q 005969 380 MTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERP-DIVSWNIVIAACAH----NGDYKE 454 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~ 454 (667)
...|...|++++|++.... -.+......-..++.+..+.+-|++.+++|.+. +..+.+.|..+|.+ .+.+..
T Consensus 115 a~i~~~~~~~deAl~~~~~---~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHL---GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred hHHhhcCCChHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhh
Confidence 3456677777777775553 122222333334445555555555566665542 23344445555443 234555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 455 VLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 455 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
|.-+|++|.++ ..|++.+.+-...++...+++++|..+++....... .++.+...++-.-...|
T Consensus 192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA--KDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhC
Confidence 66666666543 455666666666566666666666666665555432 23444444443333333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00032 Score=61.18 Aligned_cols=156 Identities=14% Similarity=0.069 Sum_probs=121.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhC
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLN 551 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 551 (667)
..+-..+...|+-+....+........ +.|......++....+.|++..|...+.+... +|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 555566667777777777776655443 33667777788888999999999999988774 4677889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHH
Q 005969 552 GFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEK 630 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (667)
|+.+.|..-|.+..+. .| ++..++.|.-.+.-.|+.+.|..++.+. .. .-.-+..+-..+.......|++++|.+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a-~l-~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPA-YL-SPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHH-Hh-CCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 9999999999998884 55 4667788888888899999999999887 33 233466777888888889999999998
Q ss_pred HHHhCC
Q 005969 631 IITTMP 636 (667)
Q Consensus 631 ~~~~m~ 636 (667)
+...-.
T Consensus 224 i~~~e~ 229 (257)
T COG5010 224 IAVQEL 229 (257)
T ss_pred hccccc
Confidence 877664
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.1e-05 Score=72.88 Aligned_cols=129 Identities=10% Similarity=0.112 Sum_probs=90.7
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGG 587 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 587 (667)
.....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..+. .+-+......-.+.|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344555666666777888888888777655555666777777777777888888887764 1234556666666777888
Q ss_pred CHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 005969 588 LVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPP 639 (667)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p 639 (667)
+++.|+++.++++.. .+-+..+|..|..+|.+.|++++|+-.++.+++.|
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888888888877543 33444678888888888888888888888876433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.013 Score=60.53 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=89.7
Q ss_pred HHHHHHHHHhccCChhhH---HHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC----CChhhHHHHH
Q 005969 473 TFVSLLSACSKLCNLALG---SSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD----RNVITWTALI 545 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li 545 (667)
+.+.|+..|-+.++.... +-+++.-.... |.+..+--.+++.|+-.|-+..|.++|+.+.- -|...|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HH
Confidence 345667778777776643 33344433332 33566666788888888999999999888762 2322222 23
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHH---HHHHHHHhHHhhCCCCCcchhHHHHHHHhh
Q 005969 546 SALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVRE---GMELFERMNRSYGVEPEMDHYHCVVDLLVR 621 (667)
Q Consensus 546 ~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (667)
.-+...|++..+...++...+- +.-+ ..+-..+..+| +.|.+.+ -..+-+++..+ ...-...+-+..++.++.
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~ 591 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCN 591 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3444556666666666655442 1111 11222333333 3344443 34444444333 222233445667777788
Q ss_pred cCChHHHHHHHHhCCCCC
Q 005969 622 YGHLKEAEKIITTMPFPP 639 (667)
Q Consensus 622 ~g~~~~A~~~~~~m~~~p 639 (667)
.++.++-...++.|..+|
T Consensus 592 ~~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 592 ADRGTQLLKLLESMKLPP 609 (932)
T ss_pred CCcHHHHHHHHhccccCc
Confidence 888888888888876333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00022 Score=62.23 Aligned_cols=156 Identities=14% Similarity=0.012 Sum_probs=127.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC-C--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT-D--RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
|... ..+-..+...|+-+....+..... . .|......++......|++..|+..+++.... -++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 4444 556677777888888887777754 2 34456667899999999999999999999885 36688899999999
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHH
Q 005969 583 CRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP--FPPNALIWRTFLEGCQRCRIAKYD 660 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a 660 (667)
|.+.|+++.|..-|.+..+- .+-++..++.|...+.-.|+++.|..++.+.. -..|..+-+.|..+....||++.|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999999988544 34456678899999999999999999998884 234788889999999999999999
Q ss_pred hhhhh
Q 005969 661 TLNST 665 (667)
Q Consensus 661 ~~~~~ 665 (667)
+.+..
T Consensus 222 ~~i~~ 226 (257)
T COG5010 222 EDIAV 226 (257)
T ss_pred Hhhcc
Confidence 88764
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.4e-06 Score=49.54 Aligned_cols=34 Identities=29% Similarity=0.589 Sum_probs=32.3
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005969 6 VVSFNSIISAYSRCGYVEDALRMFLYMINRGFEP 39 (667)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 39 (667)
+.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00026 Score=62.02 Aligned_cols=152 Identities=11% Similarity=0.103 Sum_probs=98.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS 522 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 522 (667)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.+ |.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence 4567778887776544432211 11 01223455566666666666654 5577788888888888888
Q ss_pred hHHHHHHHHhcCC--C-ChhhHHHHHHHH-HhCCC--hHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHH
Q 005969 523 IGSSVKIFNEMTD--R-NVITWTALISAL-GLNGF--AQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 523 ~~~A~~~~~~~~~--~-~~~~~~~li~~~-~~~~~--~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
+++|...|+...+ | +...+..+..++ ...|+ .++|.+++++..+. .| +...+..+...+.+.|++++|...
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888877663 3 455666666653 55565 47888888888775 44 456777777777888888888888
Q ss_pred HHHhHHhhCCCCCcchh
Q 005969 596 FERMNRSYGVEPEMDHY 612 (667)
Q Consensus 596 ~~~~~~~~~~~~~~~~~ 612 (667)
|+++.+. .+|+..-+
T Consensus 167 ~~~aL~l--~~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDL--NSPRVNRT 181 (198)
T ss_pred HHHHHhh--CCCCccHH
Confidence 8887444 45555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00027 Score=68.58 Aligned_cols=243 Identities=13% Similarity=0.102 Sum_probs=174.6
Q ss_pred HHHHhhcCChhHHHHHHhcCCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCh
Q 005969 412 AGIYNRTGQYNETVKLLSQLERPD---IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNL 487 (667)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~ 487 (667)
.--+.+.|+..+|.-.|+...+.| ...|--|.......++-..|+..+.+..+ +.|+ ......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhH
Confidence 334678888999998998877543 45677777777888888889999998887 4564 45677777788888888
Q ss_pred hhHHHHHHHHHHhCCCC----C---chhHHhHHHHHHHhcCChHHHHHHHHhcC-----CCChhhHHHHHHHHHhCCChH
Q 005969 488 ALGSSLHGLIKKTEIIS----S---DTFVCNMLIDMYGKCGSIGSSVKIFNEMT-----DRNVITWTALISALGLNGFAQ 555 (667)
Q Consensus 488 ~~a~~~~~~~~~~~~~~----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~ 555 (667)
..|...+....+....- + +...-.. ..+.......+..++|-++. ++|......|.-.|--.|.++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88998888876553100 0 0000000 01111122334444444443 256777888888888999999
Q ss_pred HHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHhhcCChHHHHHHHH
Q 005969 556 RALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM-DHYHCVVDLLVRYGHLKEAEKIIT 633 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 633 (667)
+|+..|+..+. ++|+ ..+||-|...++...+..+|+..|++.. + ++|.- .+...|.-.|...|.+++|.+.|=
T Consensus 448 raiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL-q--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 448 RAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL-Q--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH-h--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999998 5775 6699999999999999999999999883 3 67774 456678888999999999998764
Q ss_pred hC---C---------CCCCHHHHHHHHHHHHhcCChhHHhhh
Q 005969 634 TM---P---------FPPNALIWRTFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 634 ~m---~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~ 663 (667)
+. . -.++...|.+|-.++...++.+....+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 43 1 223567999999888888888755544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.5e-05 Score=62.94 Aligned_cols=91 Identities=15% Similarity=-0.037 Sum_probs=53.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLL 619 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 619 (667)
+..+...+...|++++|...|++.... .| +...|..+..++...|++++|...|++.... -+.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 334455555666666666666666553 33 3445566666666666666666666666322 334455566666666
Q ss_pred hhcCChHHHHHHHHhC
Q 005969 620 VRYGHLKEAEKIITTM 635 (667)
Q Consensus 620 ~~~g~~~~A~~~~~~m 635 (667)
.+.|++++|.+.+++.
T Consensus 103 ~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 103 KMMGEPGLAREAFQTA 118 (144)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6666666666666655
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0052 Score=59.45 Aligned_cols=99 Identities=9% Similarity=0.072 Sum_probs=67.8
Q ss_pred cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCC--CCc-hhHHHHHHHHHhCCChHHHH
Q 005969 50 CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR--KSL-VTWNSIVSIFGKHGFVEDCM 126 (667)
Q Consensus 50 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~ 126 (667)
|..++++.|...|-+.+... |+|-..|+.-..+|++.|++++|.+=-.+-.+ |+. ..|+-...++.-.|++++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 55567888888888887766 66777788888888888888877765554443 442 36777777777788888888
Q ss_pred HHHHHHHHCCCcCChhhHHHHHHHh
Q 005969 127 FLFCELVRSEVALTESSFVGVIHGL 151 (667)
Q Consensus 127 ~~~~~m~~~~~~~~~~~~~~li~~~ 151 (667)
.-|.+-++.. +-+...+.-+..+.
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhh
Confidence 8887766643 22334455555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.6e-06 Score=49.45 Aligned_cols=34 Identities=41% Similarity=0.597 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD 470 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 470 (667)
.+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00025 Score=75.71 Aligned_cols=197 Identities=11% Similarity=0.081 Sum_probs=96.6
Q ss_pred CCChhHHhhHHHHhhccCChhHHHHhhccCCC--------CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhh
Q 005969 72 CADAFVGTALLGLYGRHGCLDEVVSVFEDMPR--------KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESS 143 (667)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 143 (667)
|.+...|...|......++.++|++++++... .-...|.++++.-..-|.-+...++|+++.+.- -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 45555566666666666666666666655432 112255555555555555556666666655421 11223
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCCh
Q 005969 144 FVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENF 223 (667)
Q Consensus 144 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 223 (667)
|..|...|.+....++|-++++.|.+.=- -.. ..|...+..+.++.+-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~-------------------------------~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTR-------------------------------KVWIMYADFLLRQNEA 1580 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chh-------------------------------hHHHHHHHHHhcccHH
Confidence 44455555555555555555555544311 233 3455555555555555
Q ss_pred hHHHHHHHHhHhCCcCCChhh---HHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 005969 224 GKALELYLRMSVDIVFPNQTT---FVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300 (667)
Q Consensus 224 ~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 300 (667)
+.|..++.+..+. -|.... ..-.+..-.+.|+.+.++.+|+.....-++ ....|+..++.-.++|+.+.++.+|
T Consensus 1581 ~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1581 EAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHH
Confidence 5555555444432 222111 111111223445555555555555544322 3445555566666666666666666
Q ss_pred hccCC
Q 005969 301 SEISN 305 (667)
Q Consensus 301 ~~~~~ 305 (667)
+++..
T Consensus 1658 eRvi~ 1662 (1710)
T KOG1070|consen 1658 ERVIE 1662 (1710)
T ss_pred HHHHh
Confidence 55544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0064 Score=55.26 Aligned_cols=90 Identities=10% Similarity=-0.033 Sum_probs=47.3
Q ss_pred HHHHHHHhcCChhHHHHhhccCCCCCchhHHHHH---HHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHH-HHhhccC
Q 005969 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTII---GALAESENFGKALELYLRMSVDIVFPNQTTFVYVI-NSCAGLQ 256 (667)
Q Consensus 181 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~ 256 (667)
-+...+...|++..|+.-|....+-|...|.++. ..|...|+...|+.=+.+..+. +||-..-..-= ..+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3444555556666666666666655555555543 2455556666666555555542 45532221111 1144556
Q ss_pred ChhHHHHHHHHHHHhc
Q 005969 257 NSILGKSIHAKVIKNA 272 (667)
Q Consensus 257 ~~~~a~~~~~~~~~~~ 272 (667)
.++.|..=|+...++.
T Consensus 121 ele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE 136 (504)
T ss_pred cHHHHHHHHHHHHhcC
Confidence 6666666666665553
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.2e-06 Score=48.40 Aligned_cols=34 Identities=32% Similarity=0.667 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYP 469 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 469 (667)
+.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999999887
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.006 Score=59.05 Aligned_cols=228 Identities=12% Similarity=0.035 Sum_probs=125.7
Q ss_pred HHHHHhhcCChhHHHHHHhcCCC--CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH-------HHHHH
Q 005969 411 IAGIYNRTGQYNETVKLLSQLER--PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVS-------LLSAC 481 (667)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------ll~~~ 481 (667)
+.+...+..+++.+++-+....+ .+..-++....+|...|.+..+...-.+..+.|-. ...-|+. +-.++
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhh
Confidence 44444555555555555554432 23333455556666666666665555555544421 1112222 22345
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCChh-hHHHHHHHHHhCCChHHHH
Q 005969 482 SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNVI-TWTALISALGLNGFAQRAL 558 (667)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~A~ 558 (667)
.+.++.+.+...+++.......| + + ..+....+++....+... .|... -...-...+.+.|++..|+
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~-~--~-------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTP-D--L-------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCH-H--H-------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence 55566666777666655443222 1 1 112223333333333222 23221 1222266778889999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHHhhcCChHHHHHHHHhCC-
Q 005969 559 EKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-MDHYHCVVDLLVRYGHLKEAEKIITTMP- 636 (667)
Q Consensus 559 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~- 636 (667)
..|.++++.. +-|...|..-.-+|.+.|.+..|+.=.+...+. .|+ ...|..=..++.-..++++|.+.|++-.
T Consensus 379 ~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 379 KHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998873 336778999999999999999988877666333 232 2223333334444457888888887773
Q ss_pred CCCCHHHHHHHHHHHHh
Q 005969 637 FPPNALIWRTFLEGCQR 653 (667)
Q Consensus 637 ~~p~~~~~~~l~~~~~~ 653 (667)
..|+..-+..-+.-|..
T Consensus 455 ~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred cCchhHHHHHHHHHHHH
Confidence 56665555444444444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0012 Score=69.88 Aligned_cols=235 Identities=10% Similarity=0.049 Sum_probs=147.7
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcC
Q 005969 373 EYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNG 450 (667)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 450 (667)
...+..|+..+...+++++|.++.+.. ..|.....|-.....+.+.++.+++..+ .++.......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 345568899999999999999999876 4444555555555566666666555443 3344444445
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHH
Q 005969 451 DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIF 530 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 530 (667)
++..+..+...|.+. .-+...+..+..+|-+.|+.+++..+++++.+.. |.++...|.+...|... +.++|.+++
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 555555555556552 3344577788888888888888888888888886 55788888888888888 888888887
Q ss_pred HhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-------------------CCCCCHhHHHHHHHHHhccCCHHH
Q 005969 531 NEMTDRNVITWTALISALGLNGFAQRALEKFREMEFL-------------------GFKPDRVALIAVLTACRHGGLVRE 591 (667)
Q Consensus 531 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------------------g~~p~~~~~~~li~~~~~~g~~~~ 591 (667)
.... ..+...+++..+.++|.++... |..--..++-.+-..|-...++++
T Consensus 173 ~KAV-----------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 173 KKAI-----------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHH-----------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 7643 2244455556666666665553 111122233444455666777888
Q ss_pred HHHHHHHhHHhhCCCCCcchhHHHHHHHhh-cCChHHHHHHHHhCCCC
Q 005969 592 GMELFERMNRSYGVEPEMDHYHCVVDLLVR-YGHLKEAEKIITTMPFP 638 (667)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~ 638 (667)
+..+++.+.+- -+-|......++.+|.. -++.....+.+..-.+.
T Consensus 242 ~i~iLK~iL~~--~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~ 287 (906)
T PRK14720 242 VIYILKKILEH--DNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIG 287 (906)
T ss_pred HHHHHHHHHhc--CCcchhhHHHHHHHHHHHccCcchHHHHHHHhccc
Confidence 88888877432 33345556666666652 23333344444433333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.017 Score=57.76 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEF-LGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
...|-+|.+--...|.++.|++.--.+.+ ..+-|....|+.|.-+-|..+.+...-+.|-++
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 34444555555667888888776544443 235666777877766656555555444444444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0005 Score=60.21 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=95.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH-HHhcCC--hHH
Q 005969 449 NGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM-YGKCGS--IGS 525 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~ 525 (667)
.++.+++...++...+.. +.|...|..+...|...|+.+.|...++...+.. |.+...+..+..+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 456677777777766643 5567788888888889999999999999888875 4477888888876 466676 489
Q ss_pred HHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH
Q 005969 526 SVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVAL 576 (667)
Q Consensus 526 A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~ 576 (667)
|.+++++..+ | +...+..+...+...|++++|+..|+++.+. .+|+..-+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 9999988873 3 5668888888889999999999999999886 35554433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00036 Score=57.63 Aligned_cols=88 Identities=11% Similarity=-0.048 Sum_probs=50.1
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhc
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRH 585 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~ 585 (667)
+..+...+...|++++|...|+.... | +...|..+..++...|++++|+..|++.... .| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHH
Confidence 33445555555666666665555442 2 3445555566666666666666666666653 33 34555666666666
Q ss_pred cCCHHHHHHHHHHh
Q 005969 586 GGLVREGMELFERM 599 (667)
Q Consensus 586 ~g~~~~A~~~~~~~ 599 (667)
.|++++|...|+..
T Consensus 105 ~g~~~eAi~~~~~A 118 (144)
T PRK15359 105 MGEPGLAREAFQTA 118 (144)
T ss_pred cCCHHHHHHHHHHH
Confidence 66666666666655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0016 Score=62.17 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=36.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
...+.+.|+.++|.+.++++... .|+ ....-.+..++.+.|++.+|..+++...... |.|+..|..|..+|...|
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhC
Confidence 33444445555555555544442 233 2233333444444444444444444444432 334444444555555444
Q ss_pred ChHHHH
Q 005969 522 SIGSSV 527 (667)
Q Consensus 522 ~~~~A~ 527 (667)
+..++.
T Consensus 423 ~~~~a~ 428 (484)
T COG4783 423 NRAEAL 428 (484)
T ss_pred chHHHH
Confidence 444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0051 Score=53.51 Aligned_cols=185 Identities=12% Similarity=0.132 Sum_probs=127.8
Q ss_pred cCChhHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh
Q 005969 449 NGDYKEVLELFKYMRA---AR-IYPDNY-TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI 523 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~---~g-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 523 (667)
..+.++..+++.++.. .| ..|+.. .|..++-+....|+.+.|...++.+.+.- |.+...-..-...+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4467777777777653 23 556655 45556666777888888888888887764 32333333334445667889
Q ss_pred HHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 524 GSSVKIFNEMTDR---NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 524 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
++|.++++.+.+. |..++---+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999988743 4455665566667778877888888887775 66788899999999999999999999999885
Q ss_pred HhhCCCCC-cchhHHHHHHHhhcC---ChHHHHHHHHhC-CCCC
Q 005969 601 RSYGVEPE-MDHYHCVVDLLVRYG---HLKEAEKIITTM-PFPP 639 (667)
Q Consensus 601 ~~~~~~~~-~~~~~~l~~~~~~~g---~~~~A~~~~~~m-~~~p 639 (667)
-. .|. +-.+..+.+.+.-.| +.+-|.+.+.+. .+.|
T Consensus 182 l~---~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LI---QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred Hc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 33 444 344456666655444 566677777766 3444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.025 Score=54.97 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=112.8
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHH
Q 005969 487 LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RNVITWTALISALGLNGFAQRALEKF 561 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~ 561 (667)
.+.....++++....... -..+|..+++.-.+...+..|..+|.++.+ .++...++++..||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~-~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDID-LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccC-CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 455556666665554333 355788889998999999999999999884 277788999988885 6788899999
Q ss_pred HHHHHcCCCCCHhH-HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc--chhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 562 REMEFLGFKPDRVA-LIAVLTACRHGGLVREGMELFERMNRSYGVEPEM--DHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 562 ~~~~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+--.+. -+|... -...+..+...++-..|..+|++...+ ++.|+. .+|..+++-=..-|++..+.++-+++
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 987764 445443 366777888889999999999999766 666664 78999999999999999999888776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0028 Score=60.68 Aligned_cols=152 Identities=13% Similarity=0.023 Sum_probs=107.8
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhCCChHHH
Q 005969 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN-VITWTALISALGLNGFAQRA 557 (667)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A 557 (667)
+...|+.+.|+..+..+.+.. |.|+.......+.+.+.++.++|.+.++.+. .|+ ...+-.+..+|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 345678888888888877763 5577777777888888888888888888877 455 34555667888888888888
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-
Q 005969 558 LEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP- 636 (667)
Q Consensus 558 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~- 636 (667)
+.+++..... .+-|+..|..|.++|...|+..+|....-+. +...|++++|...+....
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG-------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH-------------------HHhCCCHHHHHHHHHHHHH
Confidence 8888887775 3556778888888888888887776665433 445777888877776652
Q ss_pred ----CCCCHHHHHHHHHHHHhc
Q 005969 637 ----FPPNALIWRTFLEGCQRC 654 (667)
Q Consensus 637 ----~~p~~~~~~~l~~~~~~~ 654 (667)
..|+..=++..|......
T Consensus 454 ~~~~~~~~~aR~dari~~~~~~ 475 (484)
T COG4783 454 QVKLGFPDWARADARIDQLRQQ 475 (484)
T ss_pred hccCCcHHHHHHHHHHHHHHHH
Confidence 334444445555554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.011 Score=55.91 Aligned_cols=44 Identities=5% Similarity=-0.011 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 489 LGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 489 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
.+..+.+.+.+.. |.+..+|+....++...|+++++++.++.+.
T Consensus 126 ~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 126 KELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444332 2244444444444444444444444444444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0011 Score=69.32 Aligned_cols=142 Identities=5% Similarity=-0.052 Sum_probs=108.6
Q ss_pred CCCChhHHhhHHHHhhccCChhHHHHhhccCCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHH
Q 005969 71 FCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR--KS-LVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGV 147 (667)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 147 (667)
++.++..+-.|..+..+.|+.++|..+++...+ |+ ......+..++.+.+++++|+..+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 567788888888888899999999999988764 54 4466778888899999999999999988754 2244455666
Q ss_pred HHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---CCCchhHHHHH
Q 005969 148 IHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSWNTII 214 (667)
Q Consensus 148 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 214 (667)
..++...|+.++|..+|+.+.. ..+-+..++..+...+-+.|+.++|...|+... .+....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6777788999999999999888 334457788888888888899888888888765 24445555444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.2e-05 Score=44.84 Aligned_cols=31 Identities=45% Similarity=0.756 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMINRGF 37 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 37 (667)
.+||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0015 Score=68.55 Aligned_cols=129 Identities=5% Similarity=0.032 Sum_probs=73.0
Q ss_pred CCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHH
Q 005969 402 PRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PD-IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSL 477 (667)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 477 (667)
+.+...+..+..+..+.|.+++|+.+++...+ |+ ......+...+.+.+++++|+..+++..+. .|+ ......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 33455555566666666666666666666553 22 233444555566666666666666666553 233 3344445
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
..++.+.|+.++|..+|+++...+ |.+...+..+...+...|+.++|...|+...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555556666666666666666532 2245566666666666666666666666554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00054 Score=66.01 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=89.5
Q ss_pred HHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHH
Q 005969 414 IYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSL 493 (667)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (667)
.+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..+.. +-+...+......+.+.++.+.|..+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33444555555557777776666666677888888888888888888887642 34566666666778888888999999
Q ss_pred HHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 494 HGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
.+++.+.. |.+..+|..|...|...|+++.|+..++.+.
T Consensus 257 Ak~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 257 AKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 98888874 5567788889999999999999998888776
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0084 Score=56.78 Aligned_cols=205 Identities=11% Similarity=0.040 Sum_probs=134.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcC-ChhHHHHHHhcCCC---CCcchHHHHHHHHHHcC
Q 005969 377 GSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTG-QYNETVKLLSQLER---PDIVSWNIVIAACAHNG 450 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g 450 (667)
+.+-..+...++.++|+..+..+ ..|.+...++....++...+ ++++++..++++.+ .+..+|+..-..+.+.|
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 34555667788999999999888 55666667777777777777 57899999888764 33345655544555566
Q ss_pred Ch--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc---CCh--
Q 005969 451 DY--KEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC---GSI-- 523 (667)
Q Consensus 451 ~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~-- 523 (667)
+. ++++.+++++.+.. +-|..+|.....++...|+++.+++.++++.+.+. .+...|+.....+.+. |+.
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~--~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV--RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--CchhHHHHHHHHHHhccccccccc
Confidence 53 67889998998754 34667888888888889999999999999999863 3666776666555443 222
Q ss_pred --HHHHHHHHhcC--CC-ChhhHHHHHHHHHhC----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 524 --GSSVKIFNEMT--DR-NVITWTALISALGLN----GFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 524 --~~A~~~~~~~~--~~-~~~~~~~li~~~~~~----~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
++.......+. .| |...|+-+...+... ++..+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 34444443333 23 555666666666552 23345666666655531 2234455666666654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00078 Score=55.30 Aligned_cols=89 Identities=9% Similarity=-0.038 Sum_probs=38.1
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCC
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNG 552 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 552 (667)
.+...+...|+.+.|.+.++.+...+ |.++..+..+...+...|++++|...++...+ .+...+..+...+...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 33344444455555555554444432 22344444444444444444444444443321 12233333344444444
Q ss_pred ChHHHHHHHHHHHH
Q 005969 553 FAQRALEKFREMEF 566 (667)
Q Consensus 553 ~~~~A~~~~~~~~~ 566 (667)
+.++|+..|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.7e-05 Score=43.85 Aligned_cols=31 Identities=35% Similarity=0.644 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARI 467 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 467 (667)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00082 Score=55.77 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=51.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhh
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKPD--RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVR 621 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (667)
+...+...|++++|...|+........|+ ......|...+...|++++|+..++.. .. -...+..+....+++.+
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~--~~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PD--EAFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cC--cchHHHHHHHHHHHHHH
Confidence 34556666777777777777766542222 123344566666677777777776554 22 12233455566677777
Q ss_pred cCChHHHHHHHHh
Q 005969 622 YGHLKEAEKIITT 634 (667)
Q Consensus 622 ~g~~~~A~~~~~~ 634 (667)
.|+.++|.+.|++
T Consensus 131 ~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 131 QGDYDEARAAYQK 143 (145)
T ss_pred CCCHHHHHHHHHH
Confidence 7777777766654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00051 Score=56.41 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=42.2
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR 584 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 584 (667)
.....+...+...|++++|.+.|+.+.+ | +...+..+...+...|++++|...+++..+.+ +.+...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3344444444555555555555544431 2 33344444444555555555555555544431 223334444444455
Q ss_pred ccCCHHHHHHHHHHh
Q 005969 585 HGGLVREGMELFERM 599 (667)
Q Consensus 585 ~~g~~~~A~~~~~~~ 599 (667)
..|++++|...|+..
T Consensus 97 ~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 97 ALGEPESALKALDLA 111 (135)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0015 Score=54.19 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=93.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc--chhH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDR----VALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM--DHYH 613 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ 613 (667)
.|..++..+ ..++...+...++.+.+. .|+. ...-.+...+...|++++|...|+.+... ...|+. ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 455555555 478899999999999886 3432 24445667889999999999999999665 322221 2445
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHhhhhhcC
Q 005969 614 CVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTFLEGCQRCRIAKYDTLNSTKC 667 (667)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 667 (667)
.|...+...|++++|+..++... .......+......+.+.|+.+.|..+.+++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67888999999999999998874 2334556667778899999999999988764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0006 Score=65.98 Aligned_cols=116 Identities=10% Similarity=0.081 Sum_probs=73.5
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcCC-C-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-R-----NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAV 579 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 579 (667)
+......+++......+++++..++-+... | -..|..++++.|.+.|..++++++++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 445555666666666666667666665552 2 1234556777777777777777777777777777777777777
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 580 LTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
++.+.+.|++..|.++...|+.+ +...+..++.--+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 77777777777777777766544 5555555555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00078 Score=50.40 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=66.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhHhCCc-CCChhhHHHHHHHhhccC--------ChhHHHHHHHHHHHhcCCCCchHH
Q 005969 210 WNTIIGALAESENFGKALELYLRMSVDIV-FPNQTTFVYVINSCAGLQ--------NSILGKSIHAKVIKNALECDVFVG 280 (667)
Q Consensus 210 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 280 (667)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456677777999999999999999999 999999999999976553 234567889999999999999999
Q ss_pred HHHHHHHHh
Q 005969 281 SALVDFYAK 289 (667)
Q Consensus 281 ~~li~~~~~ 289 (667)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=49.55 Aligned_cols=80 Identities=9% Similarity=0.001 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC-cCChhhHHHHHHHhcccC--------chHHHHHHHHHHHHhcCCCchHHH
Q 005969 109 WNSIVSIFGKHGFVEDCMFLFCELVRSEV-ALTESSFVGVIHGLSNEQ--------DLEFGEQIHGLVIKNGFDYELLVA 179 (667)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 179 (667)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999998887532 345678899999999999999999
Q ss_pred HHHHHHHHh
Q 005969 180 NSLVNMYFQ 188 (667)
Q Consensus 180 ~~l~~~~~~ 188 (667)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=64.29 Aligned_cols=83 Identities=11% Similarity=0.036 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 005969 208 VSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFY 287 (667)
Q Consensus 208 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 287 (667)
.+..++++.|.+.|..+++++++..=..-|+-||.+||+.++..+.+.|++..|.++...|...+...+..++..-+.+|
T Consensus 104 ~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 104 STHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 34568899999999999999999998889999999999999999999999999999999998888777777776666666
Q ss_pred Hhc
Q 005969 288 AKC 290 (667)
Q Consensus 288 ~~~ 290 (667)
.+.
T Consensus 184 ~~~ 186 (429)
T PF10037_consen 184 YKY 186 (429)
T ss_pred HHh
Confidence 555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.029 Score=55.61 Aligned_cols=56 Identities=9% Similarity=0.146 Sum_probs=30.5
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CChh-----------hHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTD--RNVI-----------TWTALISALGLNGFAQRALEKFREMEFLG 568 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~--~~~~-----------~~~~li~~~~~~~~~~~A~~~~~~~~~~g 568 (667)
+++.....++|++|..+-+...+ |++. -|...-.+|.+.|+..+|.++++++....
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 34444555555555555554442 2221 22223456677778888888888776543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.12 Score=48.88 Aligned_cols=106 Identities=25% Similarity=0.314 Sum_probs=62.4
Q ss_pred hhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 005969 407 PANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCN 486 (667)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 486 (667)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-..+... +-++.-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344445555555566666666666666777777777777777777666554322 1123556666677776676
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 005969 487 LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 529 (667)
..+|..+...+ + + ..-+..|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~------~-~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI------P-D----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC------C-h----HHHHHHHHHCCCHHHHHHH
Confidence 66666666551 1 1 3345666666666666544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00032 Score=51.65 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcCChHHH
Q 005969 551 NGFAQRALEKFREMEFLGF-KPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYGHLKEA 628 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 628 (667)
.|+++.|+.+++++.+... .|+...+..+..+|.+.|++++|..+++.. +. .| +......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~---~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KL---DPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-TH---HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CC---CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5778888888888887532 123445555788888888888888888773 22 22 234444567888888888888
Q ss_pred HHHHHh
Q 005969 629 EKIITT 634 (667)
Q Consensus 629 ~~~~~~ 634 (667)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0071 Score=56.79 Aligned_cols=163 Identities=9% Similarity=0.049 Sum_probs=94.9
Q ss_pred ChhhHHHHHHHHHHh----CCCCCchhHHhHHHHHHHhc-CChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhC
Q 005969 486 NLALGSSLHGLIKKT----EIISSDTFVCNMLIDMYGKC-GSIGSSVKIFNEMTD-----RN----VITWTALISALGLN 551 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~ 551 (667)
+++.|.+.++...+. |....-...+..+...|... |++++|.+.|+...+ .. ...+..+...+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 666666666554432 21111234555666677777 788888888877652 12 23556677888999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-----Hh-HHHHHHHHHhccCCHHHHHHHHHHhHHh-hCCCCC--cchhHHHHHHHhhc
Q 005969 552 GFAQRALEKFREMEFLGFKPD-----RV-ALIAVLTACRHGGLVREGMELFERMNRS-YGVEPE--MDHYHCVVDLLVRY 622 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p~-----~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~--~~~~~~l~~~~~~~ 622 (667)
|++++|.++|++....-...+ .. .|...+-++...||+..|.+.+++.... .++..+ ......|+.++-..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999999999877432221 11 2333344566789999999999987433 123333 24466677776542
Q ss_pred --CChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005969 623 --GHLKEAEKIITTMPFPPNALIWRTFLE 649 (667)
Q Consensus 623 --g~~~~A~~~~~~m~~~p~~~~~~~l~~ 649 (667)
..+++|..-|+.+. +.|..--..|+.
T Consensus 249 D~e~f~~av~~~d~~~-~ld~w~~~~l~~ 276 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSIS-RLDNWKTKMLLK 276 (282)
T ss_dssp -CCCHHHHCHHHTTSS----HHHHHHHHH
T ss_pred CHHHHHHHHHHHcccC-ccHHHHHHHHHH
Confidence 35777777788776 555555444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0046 Score=49.31 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC-CCcchhHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIAVLTACRHGGLVREGMELFERMNRSYGVE-PEMDHYHCV 615 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l 615 (667)
+..+...+...|++++|.+.|+++.+. .|+ ...+..+..++.+.|+++.|...++.+.....-. .....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 344555556666666666666666553 222 2344556666666666666666666664331111 113445555
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 005969 616 VDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m 635 (667)
..++.+.|+.++|.+.++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHhCChHHHHHHHHHH
Confidence 66666666666666666665
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.24 Score=50.65 Aligned_cols=334 Identities=14% Similarity=0.068 Sum_probs=175.8
Q ss_pred HHCCCcCChhhHHH-----HHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC---hhHHHHhhccCCC
Q 005969 133 VRSEVALTESSFVG-----VIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAG---IWSAEKMFKDVEI 204 (667)
Q Consensus 133 ~~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 204 (667)
..-|++.+..-|.. +|..+...+.+..|.++-..+...-... ..+|......+++..+ -+-+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 35677777766655 5677777888888888877765332222 5677777777776532 2333444444444
Q ss_pred --CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCc----CCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCch
Q 005969 205 --RDVVSWNTIIGALAESENFGKALELYLRMSVDIV----FPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVF 278 (667)
Q Consensus 205 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 278 (667)
....+|..+.......|+++-|..+++.=...+- -.+..-+...+.-+...|+.+...+++-++.+.-.. .
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~---s 579 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR---S 579 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---H
Confidence 4667888888888889999999988765322221 112333455566666677777766666665543110 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCC-CCcccHHHHHHHHhcCCChHHHHHH--HHHH----HcCCCCCHhhHHHHHHH
Q 005969 279 VGSALVDFYAKCDNLEGAHLCFSEISN-KNIVSWNALILGYASKSSPTSIFLL--IELL----QLGYRPNEFTFSHVLRS 351 (667)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~a~~~~--~~m~----~~~~~~~~~~~~~~l~~ 351 (667)
.+.. ...+...|..+|.++-+ .|..+ +-..|-...+..++..+ +... ..|..|+..+
T Consensus 580 ~l~~------~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~------- 643 (829)
T KOG2280|consen 580 SLFM------TLRNQPLALSLYRQFMRHQDRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT------- 643 (829)
T ss_pred HHHH------HHHhchhhhHHHHHHHHhhchhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH-------
Confidence 1111 11122223333332211 11100 01111111112222111 1100 0122222221
Q ss_pred hhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCC----------HHHHHHHHHhc----CCCCCcchhHHHHHHHhh
Q 005969 352 SLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGL----------ISDALAFVTAL----NIPRAVVPANIIAGIYNR 417 (667)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~ 417 (667)
..+.+.+... ..+-+++.+.+ +......+.+-.+.-+..
T Consensus 644 ---------------------------~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~ 696 (829)
T KOG2280|consen 644 ---------------------------AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLIL 696 (829)
T ss_pred ---------------------------HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHH
Confidence 2222222222 11111222222 333444555666666777
Q ss_pred cCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHH
Q 005969 418 TGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLI 497 (667)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 497 (667)
.|+-.+|.++-.+.+-||-..|..=+.+++..+++++-+++-+.++. +.-|..+..+|.+.|+.++|..++.++
T Consensus 697 ~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 697 IGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred ccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 77777777777777777777777777777777777776665544431 344666777777777777777766543
Q ss_pred HHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 005969 498 KKTEIISSDTFVCNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 498 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 529 (667)
... . ..+.+|.+.|++.+|.++
T Consensus 771 ~~l-------~---ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 771 GGL-------Q---EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred CCh-------H---HHHHHHHHhccHHHHHHH
Confidence 211 1 456667777777666554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0053 Score=48.95 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=57.5
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHH
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTD--RN----VITWTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIA 578 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~ 578 (667)
++..++..+.+.|++++|.+.|+.+.+ |+ ...+..+...+...|+++.|...|+++... .|+ ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHH
Confidence 344555556666666666666666542 22 224455667777777777777777777663 232 345666
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHh
Q 005969 579 VLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+..++...|++++|...++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 666777777777777777777444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0027 Score=48.08 Aligned_cols=91 Identities=18% Similarity=0.071 Sum_probs=50.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhh
Q 005969 542 TALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVR 621 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (667)
..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++..... .+.+...+..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 344555555666666666666665531 222345555566666666666666666665332 22233455566666666
Q ss_pred cCChHHHHHHHHhC
Q 005969 622 YGHLKEAEKIITTM 635 (667)
Q Consensus 622 ~g~~~~A~~~~~~m 635 (667)
.|++++|.+.+.+.
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 66666666666544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.18 Score=47.73 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=92.4
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGL 588 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 588 (667)
+.+.-+.-+...|+...|.++-.+..=|+-.-|...+.+++..+++++-.++... +-.+.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4444566667788888999998888888888999999999999999877765432 2345778889999999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005969 589 VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRC 654 (667)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~ 654 (667)
..+|..+..++ .+..-+..|.++|++.+|.+...+.+ |......+..-|-.+
T Consensus 253 ~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 253 KKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPGN 304 (319)
T ss_pred HHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCCC
Confidence 99998887763 12456778888999999888876654 344444444444333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.025 Score=56.12 Aligned_cols=91 Identities=15% Similarity=0.073 Sum_probs=53.6
Q ss_pred hcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcch
Q 005969 532 EMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDH 611 (667)
Q Consensus 532 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (667)
++...+..+...+...+.+...+.-|-++|.+|-+. .++++.....++|++|..+-++. - .+.|| +
T Consensus 741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h-P--e~~~d--V 806 (1081)
T KOG1538|consen 741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH-P--EFKDD--V 806 (1081)
T ss_pred hcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC-c--ccccc--c
Confidence 333334444544555555555666777777776542 45667777788888887776644 1 23333 3
Q ss_pred hHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 612 YHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
|.....-++...++++|.+.|-+.+
T Consensus 807 y~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 807 YMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cchHHHHhhhhhhHHHHHHHHHHhc
Confidence 4445555666666777666666553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.018 Score=50.19 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=109.7
Q ss_pred cCChHHHHHHHHHHHHC---C-CCCCchhHhH-hh-c-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCCh
Q 005969 19 CGYVEDALRMFLYMINR---G-FEPTQFTFGG-LL-S-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCL 91 (667)
Q Consensus 19 ~~~~~~a~~~~~~m~~~---~-~~p~~~~~~~-ll-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 91 (667)
..+.++.+++++.++.. | ..|+..+... ++ . ...++.+.|...++++..+ +|.+..+-..-...+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 35666777777666653 3 3344433222 21 2 3444666777777666544 344443333333334556777
Q ss_pred hHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHH
Q 005969 92 DEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVI 168 (667)
Q Consensus 92 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 168 (667)
++|.++++.+.+ .|.++|---+...-..|+-.+|++-+....+. +..|...|..+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777777777764 24556666666666667777777777766654 45677777777777777788887777777776
Q ss_pred HhcCCCchHHHHHHHHHHHhcC---ChhHHHHhhccCCCCCc
Q 005969 169 KNGFDYELLVANSLVNMYFQCA---GIWSAEKMFKDVEIRDV 207 (667)
Q Consensus 169 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 207 (667)
-.. |.++-.+..+.+.+...| +...|.+.|.+..+-+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 553 234444455555555444 34556777766654333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0032 Score=53.73 Aligned_cols=89 Identities=18% Similarity=0.339 Sum_probs=60.1
Q ss_pred CCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc----------------CCHHHHH
Q 005969 535 DRNVITWTALISALGL-----NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHG----------------GLVREGM 593 (667)
Q Consensus 535 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~----------------g~~~~A~ 593 (667)
..+-.+|..++..|.+ .|.++-....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555543 355666666677777777777777777777776442 2235578
Q ss_pred HHHHHhHHhhCCCCCcchhHHHHHHHhhcCC
Q 005969 594 ELFERMNRSYGVEPEMDHYHCVVDLLVRYGH 624 (667)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (667)
+++++| +.+|+.||.+++..|+..+++.+.
T Consensus 124 ~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 888888 666888888888888888877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.043 Score=48.14 Aligned_cols=235 Identities=11% Similarity=-0.011 Sum_probs=147.2
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHh--hc-cCCc-cchhhHHH-HHHHHHhCCCCCChhHHhh
Q 005969 6 VVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGL--LS-CDSL-NPVEGAQL-QASVLKNGLFCADAFVGTA 80 (667)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--l~-~~~~-~~~~a~~~-~~~~~~~~~~~~~~~~~~~ 80 (667)
...|+.-+.++.+-+.+.+|..-++.+.+-. .||- .|... +. -..+ -+.-+.++ +..+... .|++ +++
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl-~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~---lgnp--qes 141 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDL-YYEYYPHVYPGRRGSMVPFSMRILHAELQQY---LGNP--QES 141 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Ccce-eeeeccccCCCCcCccccHHHHHHHHHHHHh---cCCc--HHH
Confidence 4456666778888888888887777666532 1221 11111 11 2333 23333333 3333332 2333 366
Q ss_pred HHHHhhccCChhHHHHhhccCCCC----------CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHH
Q 005969 81 LLGLYGRHGCLDEVVSVFEDMPRK----------SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHG 150 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 150 (667)
|.+.+.-..-+++.+..|+.-..| -...-+.+++.+.-.|.+.-....+.+.++...+.++...+.|.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 666666665566666665543322 1234456777777788888888888888887767788888888888
Q ss_pred hcccCchHHHHHHHHHHHHhcCCCchH-----HHHHHHHHHHhcCChhHHHHhhccCCCC---CchhHHHHHHHHHccCC
Q 005969 151 LSNEQDLEFGEQIHGLVIKNGFDYELL-----VANSLVNMYFQCAGIWSAEKMFKDVEIR---DVVSWNTIIGALAESEN 222 (667)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 222 (667)
-.+.||.+.|...++.+.+..-..+.. +.......|.-.+++.+|.+.|.+++.. |+..-|.-.-.+.-.|+
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 889999999999999887654444433 3334444566677888888888777643 44445544445556688
Q ss_pred hhHHHHHHHHhHhCCcCCChhhHHHHH
Q 005969 223 FGKALELYLRMSVDIVFPNQTTFVYVI 249 (667)
Q Consensus 223 ~~~a~~~~~~m~~~g~~p~~~t~~~ll 249 (667)
..+|++.++.|.+. .|...+-++++
T Consensus 302 l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHhcc--CCccchhhhHH
Confidence 88899988888875 45555544444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0017 Score=60.65 Aligned_cols=142 Identities=11% Similarity=0.006 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh-cCChHHHHHHHHhcCC---CChhhHHHHHHH
Q 005969 472 YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK-CGSIGSSVKIFNEMTD---RNVITWTALISA 547 (667)
Q Consensus 472 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~---~~~~~~~~li~~ 547 (667)
.+|..+++..-+.+..+.|..+|.++.+.+.. +...|......-.+ .++.+.|.++|+...+ .+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888899999999999865433 34445444444233 4667779999998773 577788888888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH
Q 005969 548 LGLNGFAQRALEKFREMEFLGFKPDR---VALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLL 619 (667)
Q Consensus 548 ~~~~~~~~~A~~~~~~~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 619 (667)
+...|+.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++... .|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~---~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL---FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---hhhhhHHHHHHHHh
Confidence 88999999999999998875 34433 47888888888889999999998888443 44455555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.079 Score=49.79 Aligned_cols=107 Identities=9% Similarity=0.094 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC---chh
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYP-----DNY-TFVSLLSACSKLCNLALGSSLHGLIKKTEIISS---DTF 508 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 508 (667)
.+..+...+.+.|++++|.++|++....-... +.. .+-..+-++...|+...|.+.++........-. ...
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 34456677788888888888888876643221 111 122223344556777788887777765431111 123
Q ss_pred HHhHHHHHHHhc--CChHHHHHHHHhcCCCChhhHHHH
Q 005969 509 VCNMLIDMYGKC--GSIGSSVKIFNEMTDRNVITWTAL 544 (667)
Q Consensus 509 ~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~l 544 (667)
....|+.++-.. ..+++|..-|+.+.+.|...-..|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 445556655442 246666666666666555443333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.17 Score=47.37 Aligned_cols=246 Identities=13% Similarity=0.062 Sum_probs=146.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCchhH--hHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhH
Q 005969 18 RCGYVEDALRMFLYMINRGFEPTQFTF--GGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDE 93 (667)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 93 (667)
-.|++++|..-|+.|.. .|..... ..|.- -..+..+.|++.-+...+.- +--.+...+++...+..|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHH
Confidence 35888888888888876 2333221 11111 22336677777777766654 5556777788888888888888
Q ss_pred HHHhhccCC-----CCCch--hHHHHHHHHH---hCCChHHHHHHHHHHHHCCCcCChhhH-HHHHHHhcccCchHHHHH
Q 005969 94 VVSVFEDMP-----RKSLV--TWNSIVSIFG---KHGFVEDCMFLFCELVRSEVALTESSF-VGVIHGLSNEQDLEFGEQ 162 (667)
Q Consensus 94 a~~~~~~~~-----~~~~~--~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~ 162 (667)
|+++++.-. +++.. .-..|+.+-+ -..+...|...-.+..+ +.||...- ..-.+++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 888877543 23332 1222332211 12344455554444433 44554432 233467778888888888
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCChhHH----HHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCc
Q 005969 163 IHGLVIKNGFDYELLVANSLVNMYFQCAGIWSA----EKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIV 238 (667)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 238 (667)
+++.+-+...+|+.. ++..+.+.|+.... .+-++.|...+..+--.+..+-...|++..|..--+.... .
T Consensus 285 ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~ 358 (531)
T COG3898 285 ILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--E 358 (531)
T ss_pred HHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--h
Confidence 888888776666542 22334455553222 2334566666777777777777788887777665444433 3
Q ss_pred CCChhhHHHHHHH-hhccCChhHHHHHHHHHHHhcCCCC
Q 005969 239 FPNQTTFVYVINS-CAGLQNSILGKSIHAKVIKNALECD 276 (667)
Q Consensus 239 ~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 276 (667)
.|....|..|... -...|+-.++.+.+.+.++.--+|+
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 6777777777666 4455777777777777776654443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0043 Score=53.00 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=72.7
Q ss_pred HhhccC--CCCCchhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccC-------------
Q 005969 96 SVFEDM--PRKSLVTWNSIVSIFGK-----HGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQ------------- 155 (667)
Q Consensus 96 ~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~------------- 155 (667)
+.|+.. ..++-.+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.||..+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344443 34566777777777764 4677777778888888999999999999988886422
Q ss_pred ---chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 005969 156 ---DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAG 191 (667)
Q Consensus 156 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (667)
+.+-|.+++++|...|+-||..++..|++.+.+.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456788999999999999999999999888865543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0073 Score=58.66 Aligned_cols=84 Identities=15% Similarity=0.033 Sum_probs=49.7
Q ss_pred HHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~ 590 (667)
..+...|++++|...|+++.+ | +...|..+..+|...|++++|+..++++.+. .| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 444555666666666666552 2 3445555566666666666666666666663 33 3445566666666666666
Q ss_pred HHHHHHHHhH
Q 005969 591 EGMELFERMN 600 (667)
Q Consensus 591 ~A~~~~~~~~ 600 (667)
+|...|++..
T Consensus 88 eA~~~~~~al 97 (356)
T PLN03088 88 TAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHH
Confidence 6666666653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.015 Score=47.46 Aligned_cols=98 Identities=11% Similarity=0.027 Sum_probs=73.1
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
+....-.+...+...|++++|.++|+-+. +| +..-|-.|..++-..|++++|+..|....... +-|+..+-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34444455666677888888888888765 44 45567778888888888888888888888853 2357788888888
Q ss_pred HhccCCHHHHHHHHHHhHHhhC
Q 005969 583 CRHGGLVREGMELFERMNRSYG 604 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~ 604 (667)
+...|+.+.|.+.|+..+...+
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhc
Confidence 8888888888888887755533
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.013 Score=45.88 Aligned_cols=107 Identities=20% Similarity=0.156 Sum_probs=71.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHh
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKPD--RVALIAVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLV 620 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 620 (667)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999999886665 34677788888899999999999998865521111 2222333445667
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005969 621 RYGHLKEAEKIITTMPFPPNALIWRTFLEGC 651 (667)
Q Consensus 621 ~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~ 651 (667)
..|+.++|++.+-..- .++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 8899999988775432 23333444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=45.08 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHH
Q 005969 586 GGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWR 645 (667)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~ 645 (667)
.|++++|.++|+++... .+-+......+..+|.+.|++++|.++++++. ..|+...|.
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 45555555555555333 22244444445555555555555555555552 344433333
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0013 Score=48.34 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=39.1
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH
Q 005969 449 NGDYKEVLELFKYMRAARIY-PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
.|+++.|+.+++++.+.... |+...+-.+..++.+.|+.++|..+++. .+.+ +.+....-.+..++.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666554321 1233333455566666666666666655 2111 112233334455555556666665
Q ss_pred HHHH
Q 005969 528 KIFN 531 (667)
Q Consensus 528 ~~~~ 531 (667)
++|+
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=49.78 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=82.2
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD--NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNML 513 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 513 (667)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|+.+.|...+++..+.. |.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 34566677777888999999999988876543222 3567777888888899999999888888764 3356666677
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 005969 514 IDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGG 587 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 587 (667)
...|...|+...+..-++... ..+++|.+++++.... .|+. |..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcC
Confidence 777777776555443222211 1246666777666653 3433 444444444433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0088 Score=45.15 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh
Q 005969 440 NIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK 519 (667)
Q Consensus 440 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (667)
..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|.+.++...+.. +.+...+..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHH
Confidence 344455555666666666666665532 2223444445555555566666666665555543 2233344444444555
Q ss_pred cCChHHHHHHHHh
Q 005969 520 CGSIGSSVKIFNE 532 (667)
Q Consensus 520 ~~~~~~A~~~~~~ 532 (667)
.|+.++|...+..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 5555555444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.018 Score=46.96 Aligned_cols=104 Identities=9% Similarity=-0.005 Sum_probs=81.9
Q ss_pred HHHHhcC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 528 KIFNEMT-DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 528 ~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
..+..+. +.+....-.+..-+...|++++|..+|+-+.. +.|. ..-|..|.-+|-..|++++|+..|.... ...
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~- 99 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIK- 99 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC-
Confidence 3444444 44444555566777899999999999999988 4675 4566777778888999999999999884 423
Q ss_pred CCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 606 EPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+-++..+-.+..++...|+.+.|.+.|+..
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567788999999999999999999998866
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.18 Score=41.99 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C---ChhhH
Q 005969 467 IYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R---NVITW 541 (667)
Q Consensus 467 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~ 541 (667)
..|+...--.|..+....|+..+|...+++...--. ..|....-.+.++....+++..|...++.+.+ | .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f-A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIF-AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc-CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 345555555566666666666666666666544322 22555655666666666666666666665542 1 22233
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 542 TALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
-.+...+...|...+|..-|+...+ .-|+...-......+.+.|+.++|..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3455666666666667666666666 3555444333444556666666655554444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0088 Score=55.87 Aligned_cols=141 Identities=17% Similarity=0.170 Sum_probs=99.8
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHH---HHHH-HHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTA---LISA-LGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~-~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 583 (667)
.+|..++...-+.+..+.|..+|.+..+....+|.. .... +...++.+.|..+|+...+. +..+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 467788888888999999999999888543333333 2222 22356677799999999886 566777888889999
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHH
Q 005969 584 RHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTFLE 649 (667)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~~ 649 (667)
.+.++.+.|..+|++.+....-.. ...+|..+++.=.+.|+.+.+.++.+++. ..|+......+..
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999999999865522222 23588899999899999999999998884 4555444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.018 Score=49.43 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=45.5
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcCC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RN----VITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIA 578 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ 578 (667)
....+..+...+...|++++|...|++..+ |+ ...+..+...+...|++++|...+++..+. .|+ ...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344555566666666666666666665541 21 235555566666666666666666666653 332 334455
Q ss_pred HHHHHhccCC
Q 005969 579 VLTACRHGGL 588 (667)
Q Consensus 579 li~~~~~~g~ 588 (667)
+...+...|+
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 5555555555
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.71 Score=48.43 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=35.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCchhH---hHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHH
Q 005969 18 RCGYVEDALRMFLYMINRGFEPTQFTF---GGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEV 94 (667)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 94 (667)
..+++..|+....++..+ .|+.... .++...+.+..++|..+++.....+ ..|..+...+-..|...|..++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHH
Confidence 345555565555555553 2222211 1111122234444444444444333 22444445555555555555555
Q ss_pred HHhhccCC
Q 005969 95 VSVFEDMP 102 (667)
Q Consensus 95 ~~~~~~~~ 102 (667)
..++++..
T Consensus 97 ~~~Ye~~~ 104 (932)
T KOG2053|consen 97 VHLYERAN 104 (932)
T ss_pred HHHHHHHH
Confidence 55555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.037 Score=43.41 Aligned_cols=107 Identities=13% Similarity=0.041 Sum_probs=65.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-CchhHHhHHHHHHH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDN--YTFVSLLSACSKLCNLALGSSLHGLIKKTEIIS-SDTFVCNMLIDMYG 518 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 518 (667)
+..++-..|+.++|+.+|++....|+.... ..+-.+...+...|++++|..+++......... -+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445666788888888888888888765542 345556667778888888888888777653110 01222223334556
Q ss_pred hcCChHHHHHHHHhcCCCChhhHHHHHHHH
Q 005969 519 KCGSIGSSVKIFNEMTDRNVITWTALISAL 548 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 548 (667)
..|+.++|.+.+-...-++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776666554434443444444333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.032 Score=56.84 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=21.6
Q ss_pred CCcchHHHHHHHHHH--cC---ChhHHHHHHHHHHHcCCCCCH
Q 005969 434 PDIVSWNIVIAACAH--NG---DYKEVLELFKYMRAARIYPDN 471 (667)
Q Consensus 434 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~ 471 (667)
.+...|...+.+... .+ +...|..+|++..+. .|+.
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~ 375 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDF 375 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCc
Confidence 455666666666433 22 256777888887773 4654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.49 Score=45.50 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=42.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhH
Q 005969 548 LGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 548 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (667)
+..+|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|++++..+ ||+..+++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~d 529 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRD 529 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHH
Confidence 4567788887776666666 6888888888887778888888888887654 56655554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.024 Score=55.13 Aligned_cols=89 Identities=9% Similarity=-0.040 Sum_probs=64.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS 522 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 522 (667)
...+...|++++|+..|++..+.. +-+...|..+..++.+.|+++.|...++.+.+.. |.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCC
Confidence 344566788888888888887743 3345566677777778888888888888777764 4456677777777777888
Q ss_pred hHHHHHHHHhcC
Q 005969 523 IGSSVKIFNEMT 534 (667)
Q Consensus 523 ~~~A~~~~~~~~ 534 (667)
+++|...|+...
T Consensus 86 ~~eA~~~~~~al 97 (356)
T PLN03088 86 YQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHHHH
Confidence 888887777766
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.077 Score=54.15 Aligned_cols=130 Identities=12% Similarity=0.016 Sum_probs=76.5
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC--------ChHHHHHHHHh
Q 005969 466 RIYPDNYTFVSLLSACSKL-----CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG--------SIGSSVKIFNE 532 (667)
Q Consensus 466 g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~ 532 (667)
+.+.+...|...+++.... ++...|..+|+++.+.. |.....+..+..+|.... +...+.+..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3456778888888874332 33668888888888874 434555555444332221 12233333333
Q ss_pred cC-----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 533 MT-----DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 533 ~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.. ..+...|.++.-.....|++++|...+++..+. .|+...|..+...+...|++++|.+.+++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 123345555555555567777777777777764 456666777777777777777777777655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.014 Score=52.48 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=50.2
Q ss_pred HHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A 592 (667)
..+.+++.+|+..|.+..+ .|.+-|..-..+|++.|.++.|++-.+..+. +.|. ..+|..|..+|...|++.+|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 3445556666666655542 2445555555666666666666665555555 3444 23566666666666666666
Q ss_pred HHHHHHhHHhhCCCCCcchhH
Q 005969 593 MELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~ 613 (667)
.+.|++. ..+.|+-.+|.
T Consensus 169 ~~aykKa---LeldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKA---LELDPDNESYK 186 (304)
T ss_pred HHHHHhh---hccCCCcHHHH
Confidence 6665543 23455555443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.026 Score=48.23 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKPD--RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...+++.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444455555555544443211111 124444444445555555555555444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.26 Score=44.85 Aligned_cols=179 Identities=12% Similarity=0.128 Sum_probs=99.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-H---HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNY-T---FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY 517 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 517 (667)
....+...|++++|...|+++... .|+.. . .-.+..++.+.++.+.|...++...+.....|+.. +...+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~~g~ 114 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYMRGL 114 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHHHHH
Confidence 344556678888888888888774 33332 2 23455667788888888888888887754443322 22222222
Q ss_pred Hh--cC---------------ChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 005969 518 GK--CG---------------SIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVL 580 (667)
Q Consensus 518 ~~--~~---------------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li 580 (667)
+. .+ +...+.+.+ ..+..++.-|-...-..+|...+..+... .-..- ..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~--------~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e-~~ia 182 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAF--------RDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYE-LSVA 182 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHH--------HHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHH-HHHH
Confidence 11 10 111111111 12333444444444444554444443321 00111 2455
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 581 TACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+.|.+.|.+..|..-++.+++.+.-.| .......++.+|...|..++|.++...+
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 667888888888888888876643222 2345667778888888888888776544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.05 Score=46.51 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYP--DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
..|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...++...+.. |.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHH
Confidence 345566666677788888888888876543222 12366667777777788888887777776653 32344455555
Q ss_pred HHHH
Q 005969 515 DMYG 518 (667)
Q Consensus 515 ~~~~ 518 (667)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.006 Score=42.64 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=39.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 549 GLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 549 ~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
...|++++|+++|+++... .| +...+..+..+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578888888888888875 44 5667777888888888888888888887544
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.037 Score=46.02 Aligned_cols=73 Identities=23% Similarity=0.253 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH----HhhCCCCCcchhH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN----RSYGVEPEMDHYH 613 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~ 613 (667)
....++..+...|++++|+.+++++.... +.|...|..+|.+|...|+...|.+.|+++. +..|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45566777888999999999999998852 3467799999999999999999999998873 3468888876543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.63 Score=43.60 Aligned_cols=181 Identities=12% Similarity=0.069 Sum_probs=106.6
Q ss_pred ChhHHHHHHHHHHHc--------CCCCCH-----HHHHHHHHHHhccCChh---hHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 451 DYKEVLELFKYMRAA--------RIYPDN-----YTFVSLLSACSKLCNLA---LGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~--------g~~p~~-----~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
+++.|..++++..+- ...|+. .++..++.++...+..+ +|..+++.+...... .+.++-.-+
T Consensus 51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l 128 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKL 128 (278)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHH
Confidence 676666666554322 233443 46777888888877654 455566666555432 355565667
Q ss_pred HHHHhcCChHHHHHHHHhcCC-C--ChhhHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCHh-HH----HHHHHHHh
Q 005969 515 DMYGKCGSIGSSVKIFNEMTD-R--NVITWTALISALGL--NGFAQRALEKFREMEFLGFKPDRV-AL----IAVLTACR 584 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~g~~p~~~-~~----~~li~~~~ 584 (667)
..+.+.++.+++.+.+.+|.. . ....+...+..+.. ......|...++.+....+.|... .. -..+....
T Consensus 129 ~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~ 208 (278)
T PF08631_consen 129 EILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTT 208 (278)
T ss_pred HHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHc
Confidence 777778899999999998873 2 33456666555522 233456777777776655666553 11 11111222
Q ss_pred ccCC------HHHHHHHHHHhHHhhCCCCCcchhHHHHHH-------HhhcCChHHHHHHHH
Q 005969 585 HGGL------VREGMELFERMNRSYGVEPEMDHYHCVVDL-------LVRYGHLKEAEKIIT 633 (667)
Q Consensus 585 ~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~g~~~~A~~~~~ 633 (667)
..++ .+...+++..+.+..+.+.+..+-.++... +.+.+++++|.++++
T Consensus 209 ~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 209 QSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred CCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 2222 555666666554555666666554444333 456788999998886
|
It is also involved in sporulation []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.051 Score=50.97 Aligned_cols=127 Identities=13% Similarity=0.023 Sum_probs=77.0
Q ss_pred HHHHHHHHHhccCChhhHHHHHHH----HHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-------CC--Chh
Q 005969 473 TFVSLLSACSKLCNLALGSSLHGL----IKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT-------DR--NVI 539 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~ 539 (667)
.|..|-+.|.-.|+++.|+...+. ..+-|........+..+.+.+.-.|+++.|.+.|+... +. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555555566777777766543 22333222234566677777777788887777776433 22 223
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH----cC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEF----LG-FKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~----~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
+.-+|.+.|.-..++++|+.++.+-.. .+ ..-....+.+|..+|...|..+.|+.+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455667777777777788777766432 11 1123456777888888888888877776644
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.33 Score=40.46 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=95.7
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HhHHH
Q 005969 505 SDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD----RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD---RVALI 577 (667)
Q Consensus 505 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~~ 577 (667)
|+...--.|..+..+.|+..+|...|++... .|....-.+.++....++...|...++.+.+. .|+ +.+.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCchH
Confidence 3677777888999999999999999998763 47777777888888899999999999998884 343 34566
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHH
Q 005969 578 AVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKII 632 (667)
Q Consensus 578 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (667)
.+.+.+...|++.+|..-|+... + .-|+...-......+.+.|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~-~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAI-S--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHH-H--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 77888999999999999999873 3 4566666666667777888777665433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.037 Score=43.90 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=61.7
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHG 586 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 586 (667)
..++..++.++++.|+.+....+++..-..++.. -...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 3455666666666666666666665443221110 000000 111233567778888888888888
Q ss_pred CCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 587 GLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 587 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
|++..|.++++...+.++++.+..+|..|++-....
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 888888888888888888777777777777665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.22 Score=43.92 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH----
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI---- 514 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~---- 514 (667)
.+.++..+...|.+.-....+++.++..-+-++.....|.+.-.+.|+.+.|...|+...+..... +....+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-DGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-hccchhHHHHhhh
Confidence 345555555667777778888888876656677777777777888888888888888776654333 333333333
Q ss_pred -HHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH
Q 005969 515 -DMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVAL 576 (667)
Q Consensus 515 -~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~ 576 (667)
..|.-.+++..|...+.++.. .++...|.-.-+..-.|+..+|++..+.|... .|.+.+-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchh
Confidence 334455667777777776663 24444444333444457778888888888774 4544433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.04 Score=49.62 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=45.2
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCChHHHHH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN---VITWTALISALGLNGFAQRALE 559 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~ 559 (667)
+.+++.+|...|....+.. |.|+..|..-..+|.+.|.++.|++-.+....-| ..+|..|..+|...|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3444555555555544442 3344444455555555555555555444444222 2345555555555555555555
Q ss_pred HHHHHHHcCCCCCHhHHH
Q 005969 560 KFREMEFLGFKPDRVALI 577 (667)
Q Consensus 560 ~~~~~~~~g~~p~~~~~~ 577 (667)
.|++.++ +.|+-.+|.
T Consensus 171 aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHhhhc--cCCCcHHHH
Confidence 5555555 455544443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.031 Score=44.34 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=48.1
Q ss_pred hhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChh
Q 005969 602 SYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM----PFPPNALIWRTFLEGCQRCRIAK 658 (667)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~~~~~ 658 (667)
.....|+..+..+++.+|+..|++..|+++++.+ +++-+..+|..|++=+...-+.+
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~ 105 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSKR 105 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCc
Confidence 3467899999999999999999999999999887 46677999999998877665543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.5 Score=44.65 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=66.9
Q ss_pred CCCchhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCC--------hhHHhhHHHHhhccCChhHHHHhhccCCCCCch
Q 005969 38 EPTQFTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCAD--------AFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLV 107 (667)
Q Consensus 38 ~p~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 107 (667)
.|.+..|..+.. +.+...+.|+..|-+.-.-.+++.= .....+-+ -+--|++++|++++-++.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhhhhhhccchhhhh
Confidence 678888877666 4444777777766654332222110 01111112 22358999999999998877643
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCC----hhhHHHHHHHhcccCchHHHHHHHHH
Q 005969 108 TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALT----ESSFVGVIHGLSNEQDLEFGEQIHGL 166 (667)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~ 166 (667)
|....+.|++-....+++. .|-..| ...++.+-..++....|+.|.+.+..
T Consensus 767 -----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777766665543 121111 23455555666666666666655543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.02 Score=40.10 Aligned_cols=62 Identities=26% Similarity=0.217 Sum_probs=47.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccC-CHHHHHHHHHHhH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGG-LVREGMELFERMN 600 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~~~ 600 (667)
+...|..+...+...|++++|+..|++..+. .|+ ...|..+..+|...| ++++|++.+++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3456777788888888888888888888885 454 557777888888888 6888888887764
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.018 Score=39.72 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=38.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+...+...|++++|++.|+++.+. .| +...+..+..++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566777777777777777775 35 3456677777777777777777777777443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.051 Score=49.82 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=44.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcC
Q 005969 549 GLNGFAQRALEKFREMEFLGFKPDR----VALIAVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYG 623 (667)
Q Consensus 549 ~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 623 (667)
.+.|++++|+..|+.+.+. .|+. ..+..+..+|...|++++|...|+.+.+.+.-.| ....+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 4445666666666666653 3432 3445555666666666666666666644421111 1233334455555566
Q ss_pred ChHHHHHHHHhC
Q 005969 624 HLKEAEKIITTM 635 (667)
Q Consensus 624 ~~~~A~~~~~~m 635 (667)
+.++|.++++++
T Consensus 232 ~~~~A~~~~~~v 243 (263)
T PRK10803 232 DTAKAKAVYQQV 243 (263)
T ss_pred CHHHHHHHHHHH
Confidence 666666666555
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.16 Score=46.10 Aligned_cols=97 Identities=18% Similarity=0.129 Sum_probs=67.0
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCC-CHhHH
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLN---GFAQRALEKFREMEFLGFKP-DRVAL 576 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~g~~p-~~~~~ 576 (667)
|.|...|-.|...|...|+.+.|..-|....+ ++...+..+..++... ....++..+|+++... .| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 55778888888888888888888888876653 4555555555554332 2356778888888774 45 45566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66777778888888888888888544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.3 Score=42.63 Aligned_cols=145 Identities=8% Similarity=0.072 Sum_probs=105.6
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAAR-IYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
...|...+.+..+..-++.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-...- +.++.-.+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 3456667777777777899999999999988 6788889999998776 477888888888655542 32333334556
Q ss_pred HHHHhcCChHHHHHHHHhcCC---CC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 515 DMYGKCGSIGSSVKIFNEMTD---RN--VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~---~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
..+.+.++-+.|..+|+...+ .+ ...|..+|..-..-|+...+..+-++|.. +-|...+-..+..-|.-
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 667788888999999986552 22 45788889888888999888888888877 46666555555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.1 Score=40.95 Aligned_cols=60 Identities=12% Similarity=0.006 Sum_probs=41.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCcCChh-h---HHHHHHHhcccCchHHHHHHHHHHHHhcC
Q 005969 111 SIVSIFGKHGFVEDCMFLFCELVRSEVALTES-S---FVGVIHGLSNEQDLEFGEQIHGLVIKNGF 172 (667)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 172 (667)
.....+...|++++|++.|+.+...- |+.. . .-.+..++.+.++++.|...++...+...
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34455567889999999999887743 3332 2 13455666788888888888888877654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.51 Score=36.86 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
.....+..+..+|+-+.-.+++..+.+. -++++...--+..+|.+.|+..++.+++.+..++ |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3445566777777777777777777653 3677777777888888888888888888777444 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.98 Score=43.39 Aligned_cols=161 Identities=12% Similarity=0.023 Sum_probs=80.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCC--CCchhHHhHHHHHHHh---cCChHHHHHHHHhcC----CCChhhHHHH
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEII--SSDTFVCNMLIDMYGK---CGSIGSSVKIFNEMT----DRNVITWTAL 544 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~----~~~~~~~~~l 544 (667)
...++-+|....+++...++.+.+...... +..+..-.....++.+ .|+.++|++++..+. .++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334444577777777777777777665211 1122222334445555 677777777776632 2455667766
Q ss_pred HHHHHh----C-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH----HHHHHHHHh---HHhhCC---
Q 005969 545 ISALGL----N-----GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR----EGMELFERM---NRSYGV--- 605 (667)
Q Consensus 545 i~~~~~----~-----~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~----~A~~~~~~~---~~~~~~--- 605 (667)
...|-. . ...++|++.|.+.-+. .||..+=-.++..+.-.|... +..++--.+ ..+.|.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 666521 1 1255666666665552 344332111222222223211 222322111 111122
Q ss_pred CCCcchhHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 606 EPEMDHYHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
..+-+.+.+++.+..-.|+.++|.+..++|-
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2233445566666677777777777777777
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.027 Score=39.40 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=52.1
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcC-ChHHHHHHHHhC
Q 005969 572 DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYG-HLKEAEKIITTM 635 (667)
Q Consensus 572 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m 635 (667)
++.+|..+...+...|++++|+..|++.++. .+-+...+..+..++.+.| ++++|.+.+++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4567888899999999999999999999665 3446678889999999999 799999988764
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.3 Score=43.18 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=80.9
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 005969 445 ACAHNGDYKEVLELFKYMRAARIY--PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS 522 (667)
Q Consensus 445 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 522 (667)
.+...|++.+|...|+++...... --....-.++.++.+.|+.+.|...++...+.....|.. -+...+.+.+....
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHh
Confidence 344556666666666666554211 112234445555666666666666666665553222111 11111111111110
Q ss_pred hHHHHHHHHhcCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHH
Q 005969 523 IGSSVKIFNEMTDR-------NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 523 ~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
..... ..+. -...+..++.-|-...-..+|...+..+.+. .-.. -..+.+.|.+.|.+..|..-
T Consensus 93 ~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 93 IPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHHH
T ss_pred Cccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHHH
Confidence 11100 0011 1123445566666666666666655555441 1111 12356667888888888888
Q ss_pred HHHhHHhhCCCCC-cchhHHHHHHHhhcCChHHHH
Q 005969 596 FERMNRSYGVEPE-MDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 596 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 629 (667)
++.+++.+.-.+. ......++.++.+.|..+.|.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888666222221 134566777777777766443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.025 Score=38.97 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=37.3
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
+...+...|++++|.+.|+.+.+ | +...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556677777777777777663 3 3446666777777778888888888777763
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.14 Score=47.08 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=56.3
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCC--CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHH
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTD--RNV----ITWTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIA 578 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~ 578 (667)
.|...+..+.+.|++++|...|+.+.+ |+. ..+-.+...|...|++++|...|+.+.+. .|+ ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHH
Confidence 344444444455666666666666552 332 24555667777777777777777777763 333 234444
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHh
Q 005969 579 VLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+...+...|++++|..+|+.+++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555666777788888887777555
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.087 Score=47.16 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-chhHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM-DHYHC 614 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 614 (667)
.|+.-+..+ +.|++..|..-|...++. -|+ +..+-.|.+++...|++++|..+|..+.+.++-.|.. +.+-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 466666554 567799999999999886 343 3356678899999999999999999997776655554 77888
Q ss_pred HHHHHhhcCChHHHHHHHHhC
Q 005969 615 VVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~m 635 (667)
|.....+.|+.++|...|++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 888999999999999998887
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.4 Score=38.87 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=26.0
Q ss_pred HhccCChhhHHHHHHHHHHhCCCC-CchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 481 CSKLCNLALGSSLHGLIKKTEIIS-SDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
+...|+++.|...|+.+....... -.....-.++.++.+.|++++|...++...
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444556666666666655542211 122333444555556666666666555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.093 Score=47.64 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=58.1
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchh----HhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChh
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFT----FGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAF 76 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 76 (667)
|.|...|-.|..+|...|+..+|..-|....+. .|+..- |...+. -..+ ...++..++.++++.+ +.|+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHH
Confidence 567788999999999999999999999998874 222221 222222 1222 5555666666666555 44444
Q ss_pred HHhhHHHHhhccCChhHHHHhhccCC
Q 005969 77 VGTALLGLYGRHGCLDEVVSVFEDMP 102 (667)
Q Consensus 77 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 102 (667)
....|...+...|++.+|...++.|.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44444455555555555555555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.12 Score=48.72 Aligned_cols=131 Identities=12% Similarity=0.027 Sum_probs=93.1
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHH----HHcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHH----HHhCCCCCc
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYM----RAARIYP-DNYTFVSLLSACSKLCNLALGSSLHGLI----KKTEIISSD 506 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~ 506 (667)
-..|..|-..|.-.|+++.|+..-+.- ++-|-+. ....+..+.+++.-.|+++.|.+.++.. .+.|.....
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 345666777777788899887765442 2323222 2346777888888889999998887764 344433335
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcCC---------CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMTD---------RNVITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
..+..+|.+.|.-..++++|+.++++-.. -....+-+|..+|...|..++|+.+.+.-.+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66777889999988999999988875441 2456788899999999999999888777654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.035 Score=40.04 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=27.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHh---hCC-CCC-cchhHHHHHHHhhcCChHHHHHHHHh
Q 005969 575 ALIAVLTACRHGGLVREGMELFERMNRS---YGV-EPE-MDHYHCVVDLLVRYGHLKEAEKIITT 634 (667)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (667)
+|+.+...|...|++++|+..+++..+- .|- .|. ..++..+..++...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555555555555555544321 111 011 23455555555555555555555543
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.051 Score=38.50 Aligned_cols=54 Identities=20% Similarity=0.086 Sum_probs=34.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 546 SALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 546 ~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
..|.+.+++++|++.++++... .| +...+.....++.+.|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456666777777777777664 33 344555666666677777777777776643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.8 Score=40.37 Aligned_cols=159 Identities=11% Similarity=0.083 Sum_probs=84.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---cCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 441 IVIAACAHNGDYKEVLELFKYMRAAR---IYPDNYTFVSLLSACSK---LCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 441 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
.++-+|....+++..+++++.|.... +.-....-....-++.+ .|+.++|.+++..+......+ ++.++..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~-~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP-DPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-ChHHHHHHH
Confidence 34445666666777777777666531 11111222223334444 667777777766644433223 666666666
Q ss_pred HHHHh---------cCChHHHHHHHHhcCCCChhhHH--HHHHHHHhCCC----hHHHHHHH---HH-HHHcCCCC---C
Q 005969 515 DMYGK---------CGSIGSSVKIFNEMTDRNVITWT--ALISALGLNGF----AQRALEKF---RE-MEFLGFKP---D 572 (667)
Q Consensus 515 ~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~~~----~~~A~~~~---~~-~~~~g~~p---~ 572 (667)
..|-. ....++|...|.+.-+-+...|+ .+...+...|. -.+..++- .. +.+.|... +
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 55432 12367777777766532222222 12222223332 22333333 11 22344332 3
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 573 RVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 573 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
-.-+.+++.++.-.|++++|.+..++|.
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4456778999999999999999999995
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.076 Score=44.13 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=51.0
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH-----HcCCCCCHhHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREME-----FLGFKPDRVALI 577 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~-----~~g~~p~~~~~~ 577 (667)
..+...++..+...|++++|.++.+.+. +| +...|..+|.+|...|+...|++.|+++. +.|+.|++.+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3456667778888899999999998887 34 66789999999999999999999998875 358899877543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.035 Score=40.00 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc--CCC---CC-HhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFL--GFK---PD-RVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
+++.+...|...|++++|+..|++..+. ... |+ ..++..+..+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666665432 011 11 3466677777777777777777777653
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.087 Score=37.28 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=35.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 005969 444 AACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTE 501 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 501 (667)
..|.+.+++++|.++++.+...+ +.+...+......+.+.|+++.|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34566677777777777776642 2244455556666666777777777777666654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.45 Score=48.20 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=91.9
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchh------HHhHHHHHHHh----cCChHHHHHHHHhcCC--CChhhHH
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTF------VCNMLIDMYGK----CGSIGSSVKIFNEMTD--RNVITWT 542 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~A~~~~~~~~~--~~~~~~~ 542 (667)
..++...+-.||-+.+.+.+....+.+... .+. .|...+..++. ....+.|.++++.+.+ |+...|.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 344555555666677776666655543222 221 22222222222 3456778888887775 6665554
Q ss_pred HH-HHHHHhCCChHHHHHHHHHHHHcC--C-CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHH-HH
Q 005969 543 AL-ISALGLNGFAQRALEKFREMEFLG--F-KPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCV-VD 617 (667)
Q Consensus 543 ~l-i~~~~~~~~~~~A~~~~~~~~~~g--~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~ 617 (667)
.. .+.+...|++++|++.|++..... . +.....+.-+...+.-..+|++|.+.+..+.+.... +..+|..+ .-
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHHH
Confidence 43 355566788888888888655311 1 112345666777778888888888888888554333 33344333 33
Q ss_pred HHhhcCCh-------HHHHHHHHhCC
Q 005969 618 LLVRYGHL-------KEAEKIITTMP 636 (667)
Q Consensus 618 ~~~~~g~~-------~~A~~~~~~m~ 636 (667)
++...|+. ++|.++|.+.+
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33456666 77777777763
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.27 Score=43.94 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=74.3
Q ss_pred HHhhccCC--CCCchhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccC------------
Q 005969 95 VSVFEDMP--RKSLVTWNSIVSIFGK-----HGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQ------------ 155 (667)
Q Consensus 95 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~------------ 155 (667)
+..|...+ +++-.+|-+.+..|.. .+.++-....+..|.+.|+.-|..+|+.||..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 4566778878777764 3567777777888999999999999999998876533
Q ss_pred ----chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 005969 156 ----DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAG 191 (667)
Q Consensus 156 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (667)
+-+-+..++++|...|+.||..+-..|++++.+.+.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234578899999999999999999999998877664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.83 E-value=5.8 Score=41.17 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=86.4
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGL 588 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 588 (667)
+.+--+.-+...|+..+|.++-.+.+=||-..|-.-+.+++..+++++-+++-+.+. .+.-|..++.+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 444555667778999999999999999999999999999999999888766655532 25567778999999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 589 VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.++|.+++.+. .. +...+.+|.+.|++.+|.++.-+-
T Consensus 760 ~~EA~KYiprv-~~---------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 760 KDEAKKYIPRV-GG---------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHhhhhhcc-CC---------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 99999998766 21 115778889999999888776443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.3 Score=34.70 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=76.5
Q ss_pred HhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHH---HHHHHHHHHhcCChh
Q 005969 117 GKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLV---ANSLVNMYFQCAGIW 193 (667)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~ 193 (667)
.-.|..++..+++.+...+ .+..-+|-+|.-....-+-+...++++.+ |--.|... .-.++..|+..|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcc--
Confidence 3457777777777776553 23344454444443333444444444433 22222221 1234444444442
Q ss_pred HHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 005969 194 SAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNAL 273 (667)
Q Consensus 194 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 273 (667)
+.......+..+..+|.-+.--+++..+.. .-.+++.....+..+|.+.|+..++..++.+..+.|+
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344566678888888998888888888765 3467777788888889999999999988888888875
Q ss_pred C
Q 005969 274 E 274 (667)
Q Consensus 274 ~ 274 (667)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.73 Score=44.97 Aligned_cols=64 Identities=9% Similarity=-0.054 Sum_probs=45.1
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNV----ITWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
|.+...++.+..+|...|++++|...|++.. +|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4466677777777777777777777777655 3543 24677777777777777777777777764
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.32 Score=43.46 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=79.7
Q ss_pred HHhhccCC--CCCchhHHHHHHHHHcc-----CChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCC-----------
Q 005969 196 EKMFKDVE--IRDVVSWNTIIGALAES-----ENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQN----------- 257 (667)
Q Consensus 196 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------- 257 (667)
+..|.... ++|-.+|-..+..+... +..+-....++.|.+-|+.-|..+|+.|+..+-+-.-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 56777777777766543 5566677778889999999999999999988766432
Q ss_pred -----hhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh-HHHHHHHhccC
Q 005969 258 -----SILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNL-EGAHLCFSEIS 304 (667)
Q Consensus 258 -----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~ 304 (667)
-+-+..++++|..+|+-||..+-..|++++.+.+-. .+..++.-.|+
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 345678999999999999999999999999877653 33444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.37 Score=39.73 Aligned_cols=83 Identities=17% Similarity=0.053 Sum_probs=47.5
Q ss_pred HHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGM 593 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 593 (667)
+...|++++|..+|+-+. +| +..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 344566666666666443 22 33444555555556666666666666655543 234445555666666666666666
Q ss_pred HHHHHhH
Q 005969 594 ELFERMN 600 (667)
Q Consensus 594 ~~~~~~~ 600 (667)
..|+...
T Consensus 126 ~~f~~a~ 132 (165)
T PRK15331 126 QCFELVN 132 (165)
T ss_pred HHHHHHH
Confidence 6666653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.3 Score=44.23 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=95.6
Q ss_pred HHHHhCCChHHHHHHHHH-HHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCh
Q 005969 114 SIFGKHGFVEDCMFLFCE-LVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGI 192 (667)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (667)
....-+|+++++.++... -.-..+ .....+.+++-+-+.|..+.|.++..+- ..-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 344556777776666641 111111 2444667777777777777777764432 1234556778999
Q ss_pred hHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 005969 193 WSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNA 272 (667)
Q Consensus 193 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 272 (667)
+.|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..++-.+.-.|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99988888776 556899999999999999999998887542 4555556666777777777776666555
Q ss_pred CCCCchHHHHHHHHHHhcCChHHHHHHHhcc
Q 005969 273 LECDVFVGSALVDFYAKCDNLEGAHLCFSEI 303 (667)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (667)
- ++....++.-.|+.++..+++.+-
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3 244444555567777776665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.10 E-value=4.6 Score=42.79 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=33.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccC
Q 005969 209 SWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQ 256 (667)
Q Consensus 209 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 256 (667)
.-=.+|-.|.+.|++++|.++..+... +.......|...+..+....
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 334678889999999999999866554 35666778888888887653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.06 E-value=2 Score=35.25 Aligned_cols=125 Identities=16% Similarity=0.290 Sum_probs=82.7
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
....++..+...+.......+++.+.+ .+....+.++..|++.+ .++.++.++. .++......+++.|.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 345677777777888888888887663 24557778888887653 3444555442 2334445567788888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc-CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005969 586 GGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY-GHLKEAEKIITTMPFPPNALIWRTFLEGCQR 653 (667)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 653 (667)
.+.++++..++.++ .. +...+..+... ++.+.|.+++.+- .+...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~-~~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKD-GN---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhh-cC---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHHc
Confidence 88888888888766 22 33444444444 7888888888873 356788888777653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.05 E-value=4 Score=36.08 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=44.9
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhc
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGR 87 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (667)
.|.-...+|....++++|...+.+..+. .+.+...|...= ..+.|..+.+++.+ ++.-+..+.--...|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAK-----ayEqaamLake~~k---lsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAK-----AYEQAAMLAKELSK---LSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHH-----HHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHH
Confidence 4555666777777888888777776642 233333332111 34444444444443 22334445555566666
Q ss_pred cCChhHHHHhhcc
Q 005969 88 HGCLDEVVSVFED 100 (667)
Q Consensus 88 ~g~~~~a~~~~~~ 100 (667)
+|.++.|-..+++
T Consensus 104 ~GspdtAAmaleK 116 (308)
T KOG1585|consen 104 CGSPDTAAMALEK 116 (308)
T ss_pred hCCcchHHHHHHH
Confidence 6766665555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.6 Score=44.41 Aligned_cols=94 Identities=16% Similarity=0.076 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-chhHHHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM-DHYHCVV 616 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~ 616 (667)
..++..+.-+|.+.+++..|++..++.+..+ ++|....-.=.++|...|+++.|+..|+.+.+ +.|+. .+-..|+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHH
Confidence 3466677778888888888888888888753 44566666667788888888888888888843 34444 4445566
Q ss_pred HHHhhcCChHHH-HHHHHhC
Q 005969 617 DLLVRYGHLKEA-EKIITTM 635 (667)
Q Consensus 617 ~~~~~~g~~~~A-~~~~~~m 635 (667)
.+-.+.....+. .++|..|
T Consensus 333 ~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 665555544433 5666666
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.81 Score=44.65 Aligned_cols=66 Identities=3% Similarity=-0.222 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch---hHHhHHHHHHHhcCChHHHHHHHHhcCCC
Q 005969 469 PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT---FVCNMLIDMYGKCGSIGSSVKIFNEMTDR 536 (667)
Q Consensus 469 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 536 (667)
.+...++.+..+|.+.|++++|...++...+.+ |.+. .+|..+..+|...|+.++|...+++..+-
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356688889999999999999999999988885 3233 45899999999999999999999987753
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.4 Score=38.67 Aligned_cols=56 Identities=7% Similarity=0.110 Sum_probs=29.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHh--hCCCCCcchhHHHHHHHhhcCChHHHHHHH
Q 005969 576 LIAVLTACRHGGLVREGMELFERMNRS--YGVEPEMDHYHCVVDLLVRYGHLKEAEKII 632 (667)
Q Consensus 576 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (667)
|...|-.+.-..|+..|...++.-... +.-+-+..+...|+.+|- .|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 444455555566666666666653222 122223445666666654 56666665554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.72 E-value=6.1 Score=37.04 Aligned_cols=95 Identities=9% Similarity=0.038 Sum_probs=53.5
Q ss_pred HHHHHHHHhhCCHHHHH---HHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC-C--CcchHHHHHHHHHH
Q 005969 377 GSLMTSYAKSGLISDAL---AFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER-P--DIVSWNIVIAACAH 448 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~---~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~li~~~~~ 448 (667)
..++.+|...+..+... ++++.+ ..+..+..+..-+.++.+.++.+++.+.+.+|.. . ....+...+..+..
T Consensus 88 ~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~ 167 (278)
T PF08631_consen 88 RLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQ 167 (278)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 36777777776665444 444444 3344455555666666667777777777777663 1 33445555555422
Q ss_pred --cCChhHHHHHHHHHHHcCCCCCH
Q 005969 449 --NGDYKEVLELFKYMRAARIYPDN 471 (667)
Q Consensus 449 --~g~~~~A~~~~~~m~~~g~~p~~ 471 (667)
......|...+..+....+.|..
T Consensus 168 l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 168 LAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 22345566666665555455544
|
It is also involved in sporulation []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=2 Score=35.62 Aligned_cols=98 Identities=8% Similarity=-0.004 Sum_probs=73.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCC
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGH 624 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (667)
..-+-..|++++|..+|+-+.-.+ .-|..-+..|..+|-..+.+++|...|... -..+ .-|+..+-....++...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A-~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVA-FTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcc-cCCCCccchHHHHHHHhCC
Confidence 344567899999999999998843 224455666777777899999999999977 3323 3556667778999999999
Q ss_pred hHHHHHHHHhCCCCCCHHHHH
Q 005969 625 LKEAEKIITTMPFPPNALIWR 645 (667)
Q Consensus 625 ~~~A~~~~~~m~~~p~~~~~~ 645 (667)
.+.|.+.|+.....|......
T Consensus 121 ~~~A~~~f~~a~~~~~~~~l~ 141 (165)
T PRK15331 121 AAKARQCFELVNERTEDESLR 141 (165)
T ss_pred HHHHHHHHHHHHhCcchHHHH
Confidence 999999998885556544443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.52 E-value=7.4 Score=37.41 Aligned_cols=152 Identities=13% Similarity=-0.022 Sum_probs=79.1
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccCChhhHHHHHHHHHHhCCCCCchhHHhHH----------
Q 005969 446 CAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA--CSKLCNLALGSSLHGLIKKTEIISSDTFVCNML---------- 513 (667)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---------- 513 (667)
+.-.|++++|.+.--...+.. + ...+...+++ +--.++.+.+...|++..+.+....+..+....
T Consensus 179 l~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 344566666666655544421 1 1123333333 223455666666666665554221111111111
Q ss_pred HHHHHhcCChHHHHHHHHhcCC-------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhc
Q 005969 514 IDMYGKCGSIGSSVKIFNEMTD-------RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRH 585 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~ 585 (667)
.+-..+.|++..|.+.+.+... ++...|.....+..+.|+..+|+.-.++..+ +.|. ...|..-..++..
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHH
Confidence 2233456777777777777662 2334555555666677777777777766655 2332 1133333444555
Q ss_pred cCCHHHHHHHHHHhHHh
Q 005969 586 GGLVREGMELFERMNRS 602 (667)
Q Consensus 586 ~g~~~~A~~~~~~~~~~ 602 (667)
.++|++|.+-++...+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67777777777766433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.2 Score=42.76 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHH
Q 005969 376 LGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEV 455 (667)
Q Consensus 376 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 455 (667)
.+.++..+.+.|..+.|+++-+. -..-.+...+.|+.+.|.++.+... +...|..|.....+.|+++-|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PDHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HHHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hHHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 46788888888999999885432 2445566677888888888777765 556888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 456 LELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 456 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
++.|.+..+ +..|+-.|.-.|+.+...++.+.....|. ++....++.-.|+.++..+++.+..
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 888877654 45566667777777777777777666551 3444455555677777666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.37 E-value=12 Score=39.29 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=46.5
Q ss_pred HHHHHhhCCHHHHHHHHHhc-CCCC---CcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCCh
Q 005969 380 MTSYAKSGLISDALAFVTAL-NIPR---AVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDY 452 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 452 (667)
++-+.+.+.+++|++..+.. +.++ .......++..+...|++++|-...-.|...+..-|.--+..+...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 45566778888888877776 4444 2334566777777788888777776666655555555555555444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.36 E-value=4.3 Score=36.38 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=11.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRA 464 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~ 464 (667)
++.++-+.++++.|+..+++...
T Consensus 77 l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 77 LAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 33444455555555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.32 E-value=16 Score=40.53 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=42.6
Q ss_pred HHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchH---HHHHHHHHHcCChhHHH
Q 005969 380 MTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSW---NIVIAACAHNGDYKEVL 456 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~ 456 (667)
.-+|.+.|+.++|++ +|..+|+|.+|..+..++..+-.... ..|+..+...+++-+|-
T Consensus 959 al~Ye~~GklekAl~-------------------a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALK-------------------AYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHHHHHhccHHHHHH-------------------HHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHH
Confidence 345667777777776 44467777777777777765433333 45666666677777777
Q ss_pred HHHHHHHH
Q 005969 457 ELFKYMRA 464 (667)
Q Consensus 457 ~~~~~m~~ 464 (667)
++..+..+
T Consensus 1020 ~il~e~~s 1027 (1265)
T KOG1920|consen 1020 KILLEYLS 1027 (1265)
T ss_pred HHHHHHhc
Confidence 76666543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.29 E-value=5.1 Score=40.82 Aligned_cols=158 Identities=14% Similarity=0.075 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----cCChhhHHHHHHHHHHhCCCCCch
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAAR-IYPDN-----YTFVSLLSACSK----LCNLALGSSLHGLIKKTEIISSDT 507 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 507 (667)
.+..++....=.||-+.+++.+.+..+.+ +.-.. -.|..++..++. ..+.+.+.++++.+.+.- | +.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P-~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--P-NS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--C-Cc
Confidence 34445555556677777777777654432 22111 234444444433 346677888888888763 3 54
Q ss_pred hHHhH-HHHHHHhcCChHHHHHHHHhcCC-------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 005969 508 FVCNM-LIDMYGKCGSIGSSVKIFNEMTD-------RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAV 579 (667)
Q Consensus 508 ~~~~~-l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 579 (667)
..|.. -.+.+...|++++|.+.|+.... -....+--+...+....++++|.+.|.++.+.. .-...+|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 44433 34566677888888888886552 122345556777788889999999999998842 3344455555
Q ss_pred HHHH-hccCCH-------HHHHHHHHHh
Q 005969 580 LTAC-RHGGLV-------REGMELFERM 599 (667)
Q Consensus 580 i~~~-~~~g~~-------~~A~~~~~~~ 599 (667)
..+| ...|+. ++|.+++.+.
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 4443 456777 7888888776
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.6 Score=37.43 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRV--ALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.+..+...|++.|+.++|++.|.++.+....|... .+-.+|+.....|++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455566666666666666666666554344322 4455566666666666666666655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=3.7 Score=35.53 Aligned_cols=162 Identities=10% Similarity=0.013 Sum_probs=95.4
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChh--HH
Q 005969 2 PDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAF--VG 78 (667)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 78 (667)
-|.-+..||.|.--+...|+++.|.+.|+...+-...-+-...|.-|+ +..+++..|.+-+......+ +.|+. .|
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D--~~DPfR~LW 172 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD--PNDPFRSLW 172 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC--CCChHHHHH
Confidence 355677899999999999999999999999999766666667777777 66669999999999888887 44443 33
Q ss_pred hhHHHHhhccCChhHHHHhhc-cCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCC------cCChhhHHHHHHHh
Q 005969 79 TALLGLYGRHGCLDEVVSVFE-DMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEV------ALTESSFVGVIHGL 151 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~~~~~~~~~li~~~ 151 (667)
..+. -+.-++.+|..-+. +....+..-|...|-.|.- |++. ...++++.....- ..-..||--+.+.+
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 3222 12345666655443 3333343444333322221 1111 1223333332110 01123455555556
Q ss_pred cccCchHHHHHHHHHHHHh
Q 005969 152 SNEQDLEFGEQIHGLVIKN 170 (667)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~ 170 (667)
...|+.++|..+|+..+..
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 6666666666666655544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.94 E-value=4.9 Score=33.69 Aligned_cols=52 Identities=6% Similarity=-0.024 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHH
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIE 332 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~ 332 (667)
..+++.+...|++-+|.++.+....-+......++.+..+.++.. -..+++-
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666777777777877777665544445556666666666655 3344443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.65 E-value=16 Score=38.80 Aligned_cols=117 Identities=9% Similarity=0.073 Sum_probs=73.7
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCc
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSLV---TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQD 156 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 156 (667)
.-+..+.+...++-|+.+.+.-..+... ....-..-+-+.|++++|..-|-+-+.. +.| ..+|+-+.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 4455566666777777776654432211 1222233455678899888777665432 122 346666677777
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC
Q 005969 157 LEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
+..--..++.+.+.|+. +..--+.|+.+|.+.++.++-.++.+...
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 77777778888888765 33444677888888888888777776665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.59 E-value=9.3 Score=35.98 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cC----ChhhHHHHHHHHHHhCC
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSK--LC----NLALGSSLHGLIKKTEI 502 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~ 502 (667)
+++.+.+++.|.+.|++-+..+|-+....... .. ...++..+++.|++...
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 44567778888888888777666553332222 11 23456666777766643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.58 E-value=5 Score=32.85 Aligned_cols=87 Identities=8% Similarity=0.016 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
...++..+...+.+.....+++.+...+ ..+....+.++..|++.+ .....+.++. . . +.......+..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~-~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---S-NHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---c-ccCCHHHHHHHHH
Confidence 3445566666666777777777766655 345556666666666542 2222233221 1 1 2223333455555
Q ss_pred hcCChHHHHHHHHhcC
Q 005969 519 KCGSIGSSVKIFNEMT 534 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~ 534 (667)
+.+.++++.-++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 81 KAKLYEEAVELYKKDG 96 (140)
T ss_pred HcCcHHHHHHHHHhhc
Confidence 5555555555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.58 E-value=2.2 Score=40.81 Aligned_cols=62 Identities=15% Similarity=-0.018 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
++..+..++.+.+++..|+..-++....+ ++|...+-.--.++...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44455555666666666666666655543 344444444555555566666666666666555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.57 E-value=5.6 Score=33.38 Aligned_cols=136 Identities=12% Similarity=0.099 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcch
Q 005969 328 FLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVP 407 (667)
Q Consensus 328 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 407 (667)
+.++.+.+.++.|+...+..+++.+...+.......+...++-+|.......+-.+... ...+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~--------------- 77 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQ--YPPA--------------- 77 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHcc--ChHH---------------
Confidence 34444555666666666665555555555555555555555444444333333222211 1111
Q ss_pred hHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 005969 408 ANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNL 487 (667)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 487 (667)
..-+.+++.++. ..+..++..+...|++-+|+++.+..... +......++.+..+.+|.
T Consensus 78 -------------~Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~ 136 (167)
T PF07035_consen 78 -------------YQLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDD 136 (167)
T ss_pred -------------HHHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCH
Confidence 122223333332 13445566667777777777777664221 122234566666666666
Q ss_pred hhHHHHHHHHHHhC
Q 005969 488 ALGSSLHGLIKKTE 501 (667)
Q Consensus 488 ~~a~~~~~~~~~~~ 501 (667)
..-..+++-..+.+
T Consensus 137 ~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 137 QLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.22 Score=41.09 Aligned_cols=19 Identities=16% Similarity=0.476 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHhcCCh
Q 005969 639 PNALIWRTFLEGCQRCRIA 657 (667)
Q Consensus 639 p~~~~~~~l~~~~~~~~~~ 657 (667)
++...|..++..|...+..
T Consensus 123 ~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 123 DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SSSHHHHHHHHHHCTSTCT
T ss_pred CcHHHHHHHHHHHHhcCcc
Confidence 5678888888888777654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.3 Score=36.64 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhccC
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEIS 304 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~ 304 (667)
.+|.-+-.+.|++.+|.+.|..+.
T Consensus 171 EALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHH
Confidence 344444445555555555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.20 E-value=12 Score=36.19 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=47.6
Q ss_pred HHHHhhCCHHHHHHHHHhc-CCCCC-----cchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHH---HHHHHcCC
Q 005969 381 TSYAKSGLISDALAFVTAL-NIPRA-----VVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVI---AACAHNGD 451 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~ 451 (667)
+-..+.|++..|.+.|.+. .+.|+ ...|.....+..+.|+.++|+.--+.....|..-...++ .++...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888776 33332 333444555566666666666665555554443322222 22333566
Q ss_pred hhHHHHHHHHHHHc
Q 005969 452 YKEVLELFKYMRAA 465 (667)
Q Consensus 452 ~~~A~~~~~~m~~~ 465 (667)
|++|.+-+++..+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666665543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=1 Score=35.18 Aligned_cols=65 Identities=8% Similarity=-0.069 Sum_probs=32.8
Q ss_pred CCChhHHhhHHHHhhccCChhHHHHhhccCCC----CCchh---HHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005969 72 CADAFVGTALLGLYGRHGCLDEVVSVFEDMPR----KSLVT---WNSIVSIFGKHGFVEDCMFLFCELVRSE 136 (667)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~ 136 (667)
|...+.||.-.+++--+|+.++|+.=+++..+ ++... |..-...|...|+.+.|..-|+..-+.|
T Consensus 74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 45555566666666666666666555554332 11122 2222223445566666666666555544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.97 E-value=6.4 Score=43.27 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhC--CHHHHHHHHHh
Q 005969 376 LGSLMTSYAKSG--LISDALAFVTA 398 (667)
Q Consensus 376 ~~~l~~~~~~~~--~~~~a~~~~~~ 398 (667)
.-.++..|.+.+ .+++++....+
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~ 817 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKE 817 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334555555555 45555554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.56 E-value=2.3 Score=33.29 Aligned_cols=87 Identities=20% Similarity=0.072 Sum_probs=41.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc--chhHHHHHHHhhcCC
Q 005969 547 ALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM--DHYHCVVDLLVRYGH 624 (667)
Q Consensus 547 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 624 (667)
++...|+.+.|++.|.+.... .+-+...||.-..++.-.|+.++|+.=+++..+-.|-+-.. ..|..=...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555556666665555553 12245555555555555566555555555554332322111 112222333444555
Q ss_pred hHHHHHHHHh
Q 005969 625 LKEAEKIITT 634 (667)
Q Consensus 625 ~~~A~~~~~~ 634 (667)
.+.|..=|+.
T Consensus 131 dd~AR~DFe~ 140 (175)
T KOG4555|consen 131 DDAARADFEA 140 (175)
T ss_pred hHHHHHhHHH
Confidence 5555544443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.56 E-value=5.3 Score=39.50 Aligned_cols=80 Identities=10% Similarity=0.238 Sum_probs=48.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-C-CCC--HHHHHHHHHHHH
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-F-PPN--ALIWRTFLEGCQ 652 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~l~~~~~ 652 (667)
..|..++-+.|+.++|.+.+++|.+.+.......+...|+.++...+.+.++..++.+.. + -|. ...|+..+-.++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345555666777777777777776553322234456677777777777777777777764 1 222 345555554555
Q ss_pred hcCC
Q 005969 653 RCRI 656 (667)
Q Consensus 653 ~~~~ 656 (667)
+-||
T Consensus 343 av~d 346 (539)
T PF04184_consen 343 AVGD 346 (539)
T ss_pred hhcc
Confidence 5554
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.54 E-value=11 Score=34.63 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=90.0
Q ss_pred HHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCC-C---hhhHHHHHHHHHhCCChH
Q 005969 480 ACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR-N---VITWTALISALGLNGFAQ 555 (667)
Q Consensus 480 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~~~~~ 555 (667)
.....|+...+...|+...... +.+...--.+...|...|+.+.|..++..+... . ......-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4567788889999888887774 335667777889999999999999999988732 1 122222344444445555
Q ss_pred HHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcC
Q 005969 556 RALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYG 623 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 623 (667)
+...+-++.-. .| |...-..+...+...|+.++|.+.+-.+.++..-.-|...-..|++.+.--|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444444 56 5556667788888899999998887776555222334444455555554444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.48 Score=29.30 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
+..+...|...|++++|+++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.13 E-value=8 Score=32.24 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=10.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHh
Q 005969 578 AVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 578 ~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.|.-+-.+.|++.+|.++|..+
T Consensus 172 ALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHH
Confidence 3434444555555555555554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.07 E-value=2 Score=39.44 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=49.4
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHhHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEF-----LGFKPDRVALIA 578 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 578 (667)
..++..++..+...|+.+.+...++++.+ | +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34556666777777777777777776653 2 556777777777777777777777766654 466666665554
Q ss_pred HHHH
Q 005969 579 VLTA 582 (667)
Q Consensus 579 li~~ 582 (667)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.00 E-value=5.6 Score=36.97 Aligned_cols=187 Identities=12% Similarity=0.032 Sum_probs=120.0
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh-CC-CCCchhHHhHHHHHHHhcCChHH
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT-EI-ISSDTFVCNMLIDMYGKCGSIGS 525 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~ 525 (667)
..|+..+|-..++++.+. .+.|...+..-=.+|.-.|+.+.-...++++... +. .|-....-..+..++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467788888888888774 5667778888888888899888888888887755 21 11122333445556678899999
Q ss_pred HHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 526 SVKIFNEMTDR---NVITWTALISALGLNGFAQRALEKFREMEFL---GFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 526 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
|++.-++..+- |...-.++...+--.|+..++.++..+-... +.-.-...|....-.+...+.++.|+++|++=
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99988887753 4455566777777788888888887765542 11112334555666677788999999999865
Q ss_pred HHhhCCCCCcch---hHHHHHHHhhcCChHHHHHHHHhC
Q 005969 600 NRSYGVEPEMDH---YHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 600 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+-..--+.|... |..+-....+...+.+-.++-+.+
T Consensus 274 i~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 274 IWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 444233334322 222333334444444444444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.71 Score=28.50 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCch
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQF 42 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 42 (667)
.+|..+..+|.+.|++++|.++|++..+. .|+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 46788999999999999999999999986 44443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.70 E-value=2.2 Score=39.23 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH----hhCCCCCcchhH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNR----SYGVEPEMDHYH 613 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~ 613 (667)
..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4567778899999999999999999999852 44788999999999999999999999998844 358888888776
Q ss_pred HHHHH
Q 005969 614 CVVDL 618 (667)
Q Consensus 614 ~l~~~ 618 (667)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66666
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.53 E-value=2.6 Score=38.08 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=56.2
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCC--C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCC-HhHHHHHH
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTD--R----NVITWTALISALGLNGFAQRALEKFREMEFL-GFKPD-RVALIAVL 580 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g~~p~-~~~~~~li 580 (667)
.|+.-+..| +.|++.+|...|....+ | ....+--|..++...|++++|..+|..+.+. +-.|. +..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444433 34456666666665552 2 1123444677777777777777777777664 11111 34566666
Q ss_pred HHHhccCCHHHHHHHHHHhHHh
Q 005969 581 TACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6777788888888888887655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.57 Score=27.37 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMIN 34 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 34 (667)
+|+.|...|.+.|++++|+++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=89.82 E-value=31 Score=36.86 Aligned_cols=133 Identities=7% Similarity=-0.060 Sum_probs=69.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHH
Q 005969 17 SRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVV 95 (667)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 95 (667)
.+.|++..+..+-..+..... ..-..|..+.. +.....+ ++..-+.+..+.+.....-..-+..+++.++++...
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLMNQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccccCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHH
Confidence 445666666665555543211 22223333333 3322333 333333333323444444455556667788888888
Q ss_pred HhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccC
Q 005969 96 SVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQ 155 (667)
Q Consensus 96 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 155 (667)
.++..- ..+...-.....+....|+.++|.+....+-..|. ..+.....++..+.+.|
T Consensus 120 ~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 120 AFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG 177 (644)
T ss_pred HhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC
Confidence 744333 23445556667778888888888777777765553 23444445554444333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.49 Score=27.24 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=23.5
Q ss_pred HHHHHHhCCCCCChhHHhhHHHHhhccCChhHHH
Q 005969 62 QASVLKNGLFCADAFVGTALLGLYGRHGCLDEVV 95 (667)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 95 (667)
+++.++.. |.+...|+.|..+|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555 777788888888888888888875
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.59 E-value=5.3 Score=29.62 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=61.0
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELV 133 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (667)
..++|.-|-+.+...+ .....+-..-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+.+..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 4566666666665554 2233333444567889999999999999999999999987755 46777787777787887
Q ss_pred HCCCcCChhhHH
Q 005969 134 RSEVALTESSFV 145 (667)
Q Consensus 134 ~~~~~~~~~~~~ 145 (667)
.+| .|....|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 776 34444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.89 Score=26.54 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=11.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q 005969 541 WTALISALGLNGFAQRALEKFRE 563 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~ 563 (667)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=8.8 Score=37.90 Aligned_cols=131 Identities=11% Similarity=0.108 Sum_probs=78.7
Q ss_pred CCCCc---ccH--HHHHHHHHh-----cCChHHHHHHHHHHHH-CCCCCCchhHhHhhc-c----------CCc-cchhh
Q 005969 2 PDRNV---VSF--NSIISAYSR-----CGYVEDALRMFLYMIN-RGFEPTQFTFGGLLS-C----------DSL-NPVEG 58 (667)
Q Consensus 2 ~~p~~---~~~--~~li~~~~~-----~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~-~----------~~~-~~~~a 58 (667)
|+.+. ..| ...+.+... ....+.|+.+|.+... ....|+-..-...++ | ... ...+|
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 44555 667 655555554 1234567888888882 234555443222222 1 111 45666
Q ss_pred HHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCC--CCCch-hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 59 AQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMP--RKSLV-TWNSIVSIFGKHGFVEDCMFLFCELVR 134 (667)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (667)
.+..++..+.+ +.|+.....+..++.-.|+++.|...|++.. .||.. +|......+.-+|+.++|.+.+++..+
T Consensus 324 ~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 324 LELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 66777777766 6677776666666677777888888887754 35433 444444555667778888877777554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.29 E-value=21 Score=34.23 Aligned_cols=210 Identities=16% Similarity=0.106 Sum_probs=113.2
Q ss_pred HhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC-----CCCcc--hHHHHHHHHHH---cCC
Q 005969 384 AKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE-----RPDIV--SWNIVIAACAH---NGD 451 (667)
Q Consensus 384 ~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~ 451 (667)
-+.|..+.|.++-++. ..|.-.......+...+..|+|+.|+++++.-. +++.. .-..|+.+-.. ..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3445555555554444 233333444555566666666666666665443 22221 11122222111 123
Q ss_pred hhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH----
Q 005969 452 YKEVLELFKYMRAARIYPDNYT-FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSS---- 526 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A---- 526 (667)
...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+....| ... ++..+.+.|+....
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP---~ia--~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP---DIA--LLYVRARSGDTALDRLKR 317 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh---HHH--HHHHHhcCCCcHHHHHHH
Confidence 4444444443333 5566542 2233456777888888888888777765333 222 22233444442211
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh-ccCCHHHHHHHHHHhHHh
Q 005969 527 VKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR-HGGLVREGMELFERMNRS 602 (667)
Q Consensus 527 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~ 602 (667)
.+-++.|+..+..+.-.+..+-...|++..|..--+.... ..|....|..|.+.-. ..||-.++..++-+.++.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1234455555666666677777777777777666666655 4777777777776643 458888888877776543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.95 E-value=20 Score=33.54 Aligned_cols=147 Identities=10% Similarity=-0.023 Sum_probs=102.9
Q ss_pred hhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChh
Q 005969 416 NRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN----YTFVSLLSACSKLCNLA 488 (667)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~ 488 (667)
.-.|+..+|-..++++.+ .|...++..-.+|.-.|+.+.-...+++.... ..||. ..-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345666666656666653 45667777778888899999888888888754 23443 23333444556788999
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCC----C---hhhHHHHHHHHHhCCChHHHHHHH
Q 005969 489 LGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR----N---VITWTALISALGLNGFAQRALEKF 561 (667)
Q Consensus 489 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---~~~~~~li~~~~~~~~~~~A~~~~ 561 (667)
.|++.-++..+.+ +.|.....++...+...|+..++.+...+-... + ...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999888887765 447777788888899999999999988776631 1 123333444566778999999999
Q ss_pred HHHH
Q 005969 562 REME 565 (667)
Q Consensus 562 ~~~~ 565 (667)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.87 E-value=27 Score=34.90 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=90.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHH-Hh--hc
Q 005969 12 IISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLG-LY--GR 87 (667)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~ 87 (667)
++.-..+..+...-++.-.+..+ +.|+-.+...++. -......++.+++++..+.| ...++ .. ..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAg---------E~~lg~s~~~~~ 242 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAEEEASTIVEAEELLRQAVKAG---------EASLGKSQFLQH 242 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhcccccccCHHHHHHHHHHHHHHH---------HHhhchhhhhhc
Confidence 44455556666666666666665 3566655555665 23337899999999988877 11111 00 11
Q ss_pred cCChhHHHHhhccCCCCC----chhHHHHHHHHHhCCChHHHHHHHHHHHHCCCc-CChhhHHHHHHHhcccCchHHHHH
Q 005969 88 HGCLDEVVSVFEDMPRKS----LVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVA-LTESSFVGVIHGLSNEQDLEFGEQ 162 (667)
Q Consensus 88 ~g~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~ 162 (667)
.|.. .+.+..++ ..+-..+...+.+.|+.++|++.+.+|.+.... -.......|+.++...+.+.++..
T Consensus 243 ~g~~------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGHF------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccch------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 1111 11112222 222234556667889999999999999764322 233356678888888888888888
Q ss_pred HHHHHHHhcCCC-chHHHHHHH
Q 005969 163 IHGLVIKNGFDY-ELLVANSLV 183 (667)
Q Consensus 163 ~~~~~~~~~~~~-~~~~~~~l~ 183 (667)
++....+...+. -...|+..+
T Consensus 317 lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHhccccCCchHHHHHHHHH
Confidence 888875443322 244555544
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.72 E-value=5.5 Score=37.46 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=65.5
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCC----CchhHHhHHHHHHHhcCChHHHHHHHHhcCC-------CChh-hHH
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIIS----SDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-------RNVI-TWT 542 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~-~~~ 542 (667)
.++-.++...+.++++.+.|+...+-.... .....+-.|...|.+..++++|.-+.....+ .|.. .|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345555666666777777766655432111 1234566666667777776665544433221 1211 122
Q ss_pred -----HHHHHHHhCCChHHHHHHHHHHHH----cCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 543 -----ALISALGLNGFAQRALEKFREMEF----LGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 543 -----~li~~~~~~~~~~~A~~~~~~~~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.|.-++...|...+|.+..++..+ .|-.|- ......+.+.|...|+.+.|+.-|+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 233455666666666666666543 232221 224455666666677777766666655
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.05 E-value=41 Score=35.97 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHcCChhHHHHHHHHHHHcCC-CC-----CHHHHHHHHHH--HhccCChhhHHHHHH
Q 005969 447 AHNGDYKEVLELFKYMRAARI-YP-----DNYTFVSLLSA--CSKLCNLALGSSLHG 495 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~-~p-----~~~~~~~ll~~--~~~~~~~~~a~~~~~ 495 (667)
+-.+++..|...+..|.+..- .| ....+..++.+ +-..|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 346788888888888875421 11 12233333333 334588888888887
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.78 E-value=20 Score=32.16 Aligned_cols=51 Identities=25% Similarity=0.228 Sum_probs=24.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 548 LGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 548 ~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
+...++.+.+...+.+..... .. ....+..+...+...++++.|...+...
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 334445555555555554431 11 2344444444555555555555555544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.69 E-value=7 Score=35.87 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=33.9
Q ss_pred CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 570 KPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.++..+.-..++.+++.+++.+-.++|+......+..-|...|..+++.....|+..-...++++-
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 444445555555555555555555555544332233344455555555555555555555554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.40 E-value=7.6 Score=33.30 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN--YTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
..+..+...|++.|+.+.|.+.|.++.+....|.. ..+-.+|+.....+++..+.....++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35677888899999999999999998887555544 35667777888888888888887776655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.34 E-value=37 Score=34.73 Aligned_cols=176 Identities=10% Similarity=0.006 Sum_probs=97.3
Q ss_pred hhHHHHHHHhhcCChhHHHHHHhcCCCCCc---chHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Q 005969 407 PANIIAGIYNRTGQYNETVKLLSQLERPDI---VSWNIVIAACAHNGDYKEVLELFKYMRAARI--YPDNYTFVSLLSAC 481 (667)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~ 481 (667)
.+...+.--.+.|+.+.+.-+|++..-|-. ..|-..+.-....|+.+-|..++....+--. .|....+.+.+ +
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~ 376 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--E 376 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--H
Confidence 445556666677777777777777664332 2233333333344777777766665544322 22222222222 2
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH---HHHHhcCC--CChhhHHHHHH-----HHHhC
Q 005969 482 SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV---KIFNEMTD--RNVITWTALIS-----ALGLN 551 (667)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~--~~~~~~~~li~-----~~~~~ 551 (667)
-..|+...|..+++.+...- |.-...-.--+....+.|..+.+. .++....+ .+....+.+.- .+.-.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 34578888888888887764 312223333345556677777776 44433331 22222222221 12335
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 005969 552 GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGG 587 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 587 (667)
++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 6778888888888875 4556667777777765544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.29 E-value=45 Score=35.67 Aligned_cols=84 Identities=19% Similarity=0.124 Sum_probs=55.3
Q ss_pred HHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 005969 214 IGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNL 293 (667)
Q Consensus 214 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (667)
...+.+.|++++|...|-+-... +.|. .++.-+.....+..--.+++.+.+.|+. +...-..|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 34556778888888777654432 2222 2344455555555556667777777766 344447889999999999
Q ss_pred HHHHHHHhccC
Q 005969 294 EGAHLCFSEIS 304 (667)
Q Consensus 294 ~~a~~~~~~~~ 304 (667)
++-.++.+...
T Consensus 448 ~kL~efI~~~~ 458 (933)
T KOG2114|consen 448 EKLTEFISKCD 458 (933)
T ss_pred HHHHHHHhcCC
Confidence 88888877766
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.28 E-value=6 Score=36.40 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=58.3
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcCC-CChh-----hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-RNVI-----TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAV 579 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~-----~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 579 (667)
...+...++..-....+++++...+-.+.. |+.. +-...++-+ ..=++++++.++..=+.-|+-||..+++.+
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHH
Confidence 344445555555555667777766665552 2110 111122222 223566777777777777888888888888
Q ss_pred HHHHhccCCHHHHHHHHHHhHHh
Q 005969 580 LTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
++.+.+.+++.+|..+...|+.+
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888877777666443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.26 E-value=42 Score=35.30 Aligned_cols=122 Identities=11% Similarity=-0.018 Sum_probs=77.5
Q ss_pred HHHhcCChHHHHHHHHhcCC-CChh----hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 516 MYGKCGSIGSSVKIFNEMTD-RNVI----TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~-~~~~----~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
++..-|+-++|..+.+++.. .|+. -.-++..+|+-.|+..-..+++.-.... +.-|..-+-.+.-++.-..+++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 34455667788888888772 3332 1223456777777766666666555543 2334444555555667778888
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 005969 591 EGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPP 639 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p 639 (667)
....+..-+.++++......+--.|.-+|+-.|. .+|..+++-|-..|
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSDP 636 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcCh
Confidence 8888888886665555555555666667766664 78999999885333
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.13 E-value=35 Score=34.17 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHH
Q 005969 469 PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALI 545 (667)
Q Consensus 469 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li 545 (667)
.|.....+++..+++...+.-.+.+..++...|. +...|..+++.|... ..+.-..+|+++.+ .|++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e---~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE---SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3455556666666666666666666666666552 445566666666665 45555666665443 2333333444
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC---C---HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH
Q 005969 546 SALGLNGFAQRALEKFREMEFLGFKP---D---RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLL 619 (667)
Q Consensus 546 ~~~~~~~~~~~A~~~~~~~~~~g~~p---~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 619 (667)
.-|-+ ++.+++..+|.+.... +-| + ...|.-|... -..+.+..+.+...+..+.|...-...+..+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44433 5666666666665554 222 1 1123333321 13455666666666666656555555666666666
Q ss_pred hhcCChHHHHHHHHhC
Q 005969 620 VRYGHLKEAEKIITTM 635 (667)
Q Consensus 620 ~~~g~~~~A~~~~~~m 635 (667)
....++++|.+++..+
T Consensus 216 s~~eN~~eai~Ilk~i 231 (711)
T COG1747 216 SENENWTEAIRILKHI 231 (711)
T ss_pred ccccCHHHHHHHHHHH
Confidence 6666777777777655
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=87.07 E-value=25 Score=32.49 Aligned_cols=94 Identities=15% Similarity=0.043 Sum_probs=45.2
Q ss_pred HHHHcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHhccCChh-hHHHHHHHHH---Hh-CCCCCchhHHhHHHH
Q 005969 445 ACAHNGDYKEVLELF----KYMRAARIYPDNYTFVSLLSACSKLCNLA-LGSSLHGLIK---KT-EIISSDTFVCNMLID 515 (667)
Q Consensus 445 ~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~---~~-~~~~~~~~~~~~l~~ 515 (667)
.+.+.|+...|.++- +-..+.+.++|......++..+...+.-+ .-..+.+.+. +. +....++.....+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 344555554444433 33334466666665555555544332211 1222222222 22 222237788889999
Q ss_pred HHHhcCChHHHHHHHHhcCCCCh
Q 005969 516 MYGKCGSIGSSVKIFNEMTDRNV 538 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~~~~ 538 (667)
.|.+.|++.+|+..|-.-.+++.
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HHHH
T ss_pred HHHhhccHHHHHHHHHhcCChhH
Confidence 99999999999887765544333
|
; PDB: 3LKU_E 2WPV_G. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=27 Score=32.76 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=35.6
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHc
Q 005969 274 ECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQL 336 (667)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~ 336 (667)
.++..+....+.++.+.|+..-.-.+.+.+..++ ..-..+.++...|...+...+..+.+.
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~a~p~L~~l~~~ 263 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDKTLLPVLDTLLYK 263 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCHhHHHHHHHHHhh
Confidence 4455666666666666666443333334443333 234566777777777777777776653
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.88 E-value=0.73 Score=38.01 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=60.4
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhH
Q 005969 146 GVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGK 225 (667)
Q Consensus 146 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 225 (667)
.++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666667777777777888888777667788888999999998888888888884432 334556667777777777
Q ss_pred HHHHHHHh
Q 005969 226 ALELYLRM 233 (667)
Q Consensus 226 a~~~~~~m 233 (667)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77777654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.79 E-value=4.8 Score=37.83 Aligned_cols=221 Identities=14% Similarity=0.098 Sum_probs=95.6
Q ss_pred HhhcCChhHHHHHHhcCCC------CCcchHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHhc
Q 005969 415 YNRTGQYNETVKLLSQLER------PDIVSWNIVIAACAHNGDYKEVLELFKYMRAA--RIYPD---NYTFVSLLSACSK 483 (667)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~ 483 (667)
+..+.+.++++..+.+... ..-.++..+..+.++.|++++++..--.-.+. ...-. -..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444331 12234555566666666666554332111110 00111 1233334444444
Q ss_pred cCChhhHHHHHHHHHHhCCCCC---chhHHhHHHHHHHhcCChHHHHHHHHhcCC-------C--ChhhHHHHHHHHHhC
Q 005969 484 LCNLALGSSLHGLIKKTEIISS---DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-------R--NVITWTALISALGLN 551 (667)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~ 551 (667)
..++.+++.+-+.........+ ......++..++...+.++++++.|+...+ | ....+..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 4444444444433332211111 012223344455555556666666554431 1 223555666666666
Q ss_pred CChHHHHHHHHHHHH----cCCCCCHhHH-----HHHHHHHhccCCHHHHHHHHHHhHHh---hCCCCC-cchhHHHHHH
Q 005969 552 GFAQRALEKFREMEF----LGFKPDRVAL-----IAVLTACRHGGLVREGMELFERMNRS---YGVEPE-MDHYHCVVDL 618 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~----~g~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~l~~~ 618 (667)
.++++|.-+..+..+ .|+.--...| -.+.-++...|...+|.+..++..+- .|-.+. ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 666666655544332 1211111112 22333455556666666665554322 122221 1233445555
Q ss_pred HhhcCChHHHHHHHHhC
Q 005969 619 LVRYGHLKEAEKIITTM 635 (667)
Q Consensus 619 ~~~~g~~~~A~~~~~~m 635 (667)
|-..|+.+.|+.-++..
T Consensus 256 yR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHhcccHhHHHHHHHHH
Confidence 66666666655555443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.69 E-value=28 Score=32.63 Aligned_cols=203 Identities=11% Similarity=0.007 Sum_probs=122.9
Q ss_pred CCCcchHHHHHHHHHHcCCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh-----hhHHHHHHHHHHhCCC
Q 005969 433 RPDIVSWNIVIAACAHNGDY----KEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNL-----ALGSSLHGLIKKTEII 503 (667)
Q Consensus 433 ~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~ 503 (667)
.++...-...+.++...|+. +++...+..+... .|+...-...+.++...+.. ..+...+......
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--- 139 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD--- 139 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---
Confidence 45555555566666666653 4567777766432 46666666666666554321 1222333222222
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNG-FAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
+ +..+-...+.++++.++.+....+..-+.++|...-...+.++...+ ....+...+..+.. .++...-...+.+
T Consensus 140 ~-~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a 215 (280)
T PRK09687 140 K-STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG 215 (280)
T ss_pred C-CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 2 55666677778887777554444455555666665555666666543 24566676666664 5677777888888
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 005969 583 CRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTFLEGCQ 652 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~~~~~ 652 (667)
+.+.|+. .|...+-+..+. + + .....+.++..-|+. +|...+..+- -.||..+-...+.+|.
T Consensus 216 Lg~~~~~-~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 216 LALRKDK-RVLSVLIKELKK-G---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHccCCh-hHHHHHHHHHcC-C---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 8888884 455555444333 2 2 345677888888874 6777777774 4678877777777664
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.62 E-value=19 Score=34.00 Aligned_cols=126 Identities=10% Similarity=0.129 Sum_probs=58.9
Q ss_pred chhhHHHHHHHHHhCCCCCChhHHhhHHHHhhc--c----CChhHHHHhhccCCC-------CCchhHHHHHHHHHhCCC
Q 005969 55 PVEGAQLQASVLKNGLFCADAFVGTALLGLYGR--H----GCLDEVVSVFEDMPR-------KSLVTWNSIVSIFGKHGF 121 (667)
Q Consensus 55 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~ 121 (667)
+.....+++.+.+.| +..+..++.+-.-.... . -....|.++++.|++ ++-.++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 334444455555555 44444443332222111 1 123456666666653 233344444443 2222
Q ss_pred h----HHHHHHHHHHHHCCCcCChh--hHHHHHHHhcccCc--hHHHHHHHHHHHHhcCCCchHHHHHHH
Q 005969 122 V----EDCMFLFCELVRSEVALTES--SFVGVIHGLSNEQD--LEFGEQIHGLVIKNGFDYELLVANSLV 183 (667)
Q Consensus 122 ~----~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 183 (667)
. +.+..+|+.+.+.|+..+.. ..+.++..+....+ +..+..+++.+.+.|+++....|..+.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 2 34555666666656554332 33333333332222 346677777777777766555554443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.48 E-value=11 Score=27.98 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=52.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLE 457 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 457 (667)
++.+.+...++.+++..+++ +..+...|+|++|..+.+...-||...|-+|-. .+.|-.+++..
T Consensus 26 tIAdwL~~~~~~~E~v~lIR--------------lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 26 TIADWLHLKGESEEAVQLIR--------------LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHhcCCchHHHHHHHH--------------HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHH
Confidence 44455555555555555443 346677788888888888887788777765543 36677777777
Q ss_pred HHHHHHHcCCCCCHHHHH
Q 005969 458 LFKYMRAARIYPDNYTFV 475 (667)
Q Consensus 458 ~~~~m~~~g~~p~~~~~~ 475 (667)
.+.+|...| .|...+|.
T Consensus 90 rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 777777766 45444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=86.41 E-value=34 Score=34.02 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHhcc---------CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc
Q 005969 452 YKEVLELFKYMRA-ARIYPDN-YTFVSLLSACSKL---------CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC 520 (667)
Q Consensus 452 ~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 520 (667)
.+.|+.+|.+... ..+.|+. ..|..+..++... .+..+|.++-+...+.+ +.|+.....+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhh
Confidence 4567777777762 1244543 3455554443221 12223344444444443 33555555555555555
Q ss_pred CChHHHHHHHHhcC--CCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 521 GSIGSSVKIFNEMT--DRNV-ITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 521 ~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
++.+.|...|+... .||. ..|......+.-.|+.++|.+.+++..+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55555555555444 2322 2333333333445555555555555444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.18 E-value=1.8 Score=24.67 Aligned_cols=27 Identities=22% Similarity=0.064 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
+|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 345555555566666666666665555
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.87 E-value=6.6 Score=31.80 Aligned_cols=85 Identities=13% Similarity=0.062 Sum_probs=49.3
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHH
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALL 82 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 82 (667)
..+...+..-.....+.|++.+|++.|+.+..+-.. .+-.......|+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~--------------------------------g~ya~qAqL~l~ 54 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF--------------------------------GEYAEQAQLDLA 54 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--------------------------------CcccHHHHHHHH
Confidence 334444444455666677777777777777765111 012223345567
Q ss_pred HHhhccCChhHHHHhhccCCC--C--CchhHHHHHHHHHhC
Q 005969 83 GLYGRHGCLDEVVSVFEDMPR--K--SLVTWNSIVSIFGKH 119 (667)
Q Consensus 83 ~~~~~~g~~~~a~~~~~~~~~--~--~~~~~~~li~~~~~~ 119 (667)
.+|-+.|++++|...++++.+ | ....|-..+.+++.-
T Consensus 55 yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 55 YAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 777788888888887777653 2 223555556665543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.85 E-value=53 Score=35.09 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=23.8
Q ss_pred ccCChhHHHHHHHHHHHhcCC-CC-------chHHHHHHHHHHhcCChHHHHHHHh
Q 005969 254 GLQNSILGKSIHAKVIKNALE-CD-------VFVGSALVDFYAKCDNLEGAHLCFS 301 (667)
Q Consensus 254 ~~~~~~~a~~~~~~~~~~~~~-~~-------~~~~~~li~~~~~~g~~~~a~~~~~ 301 (667)
-.+++..+...++.+.+..-. |+ +..+....-.+...|+++.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 346666677777766654211 11 1111111122334577777777776
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.48 E-value=39 Score=33.20 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=28.7
Q ss_pred CChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhcc
Q 005969 139 LTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKD 201 (667)
Q Consensus 139 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 201 (667)
-|..+|-.||.-+...+..++..+++++|..- ++.-..+|..-+.+=....++...+.+|.+
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 34445555555555555555555555555321 122233444444444444444444444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.20 E-value=15 Score=34.08 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=68.3
Q ss_pred CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC-------CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 005969 400 NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER-------PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNY 472 (667)
Q Consensus 400 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 472 (667)
+.+.+..+....+..-....++++++..+-+++. ++...+ +.++. +-.-++++++.++..=++-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 3444444445555555555666777666666652 222222 22222 23446778999998888999999999
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 005969 473 TFVSLLSACSKLCNLALGSSLHGLIKKTEI 502 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 502 (667)
++..+|..+.+.++...|.++.-.+.....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999888777666543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.11 E-value=14 Score=31.71 Aligned_cols=124 Identities=10% Similarity=0.050 Sum_probs=76.4
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-------cCCccchhhHHHHHHHHHhC-CCCCChhHHh
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-------CDSLNPVEGAQLQASVLKNG-LFCADAFVGT 79 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-------~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 79 (667)
.|..++.... .+.. +.....+++... +...+|..+-. ...++++.|...++..+... .-.....+-.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQA---NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhh---ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 4666666654 3333 777777888864 33444544432 22237778877777766432 0011122233
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCchh--HHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSLVT--WNSIVSIFGKHGFVEDCMFLFCELVRSE 136 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~ 136 (667)
.|.+.....|.+|+|..+++....++... ...-..++...|+-++|..-|+...+.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44566777888888888888887765444 3334457788888888888888887765
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.11 E-value=1.3 Score=25.43 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=16.4
Q ss_pred CCchhHHhHHHHHHHhcCChHHHH
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
|.++..|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 556677777777777777777664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.92 E-value=16 Score=30.33 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=21.5
Q ss_pred ccCChhHHHHhhccCC--CCCchhHHH-HHHHHHhCCChHHHHHHHHHHHH
Q 005969 87 RHGCLDEVVSVFEDMP--RKSLVTWNS-IVSIFGKHGFVEDCMFLFCELVR 134 (667)
Q Consensus 87 ~~g~~~~a~~~~~~~~--~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~ 134 (667)
+.++.+++..+++.+. +|+...... -...+...|++.+|+.+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3445555555555443 233222211 12233455555555555555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.82 E-value=29 Score=31.09 Aligned_cols=211 Identities=17% Similarity=0.063 Sum_probs=140.4
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHH
Q 005969 450 GDYKEVLELFKYMRAARIY-PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVK 528 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 528 (667)
+....+...+......... .....+......+...++...+...+.........+.....+......+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555543322 134566666777777788887777777766531123356666777777777888888888
Q ss_pred HHHhcCC--CCh-hhHHHHHH-HHHhCCChHHHHHHHHHHHHcCCCC----CHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 529 IFNEMTD--RNV-ITWTALIS-ALGLNGFAQRALEKFREMEFLGFKP----DRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 529 ~~~~~~~--~~~-~~~~~li~-~~~~~~~~~~A~~~~~~~~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
.+..... ++. ........ .+...|+.+.|...+.+... ..| ....+......+...++++.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8887764 222 22333333 78899999999999999866 333 23345555555778899999999999885
Q ss_pred HhhCCCC-CcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHhhhh
Q 005969 601 RSYGVEP-EMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPN-ALIWRTFLEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 601 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 664 (667)
.. .+. ....+..+...+...+++++|...+.... ..|+ ...+..+...+...+..+.+....
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 44 333 46778888899999999999999998884 4454 455555555555555566555433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.71 E-value=5.2 Score=29.50 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 005969 556 RALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVD 617 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 617 (667)
++.+-++.+....+.|++......+++|.+..|+..|..+++-++.+ ...+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 44555556666667788888888888888888888888888877434 2223445555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.51 E-value=23 Score=38.56 Aligned_cols=127 Identities=11% Similarity=0.083 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhh-
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYG- 86 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 86 (667)
-|..||.-|...|++++|+.+|.+....--.-+. +. .+.-..+.+-+.+.+ .++.. |+-.|.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-~~----------~~~~e~ii~YL~~l~--~~~~~----Li~~y~~ 568 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDS-FQ----------LDGLEKIIEYLKKLG--AENLD----LILEYAD 568 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccccc-ch----------hhhHHHHHHHHHHhc--ccchh----HHHHHhh
Confidence 4788999999999999999999999874210111 11 111112333333333 23222 222222
Q ss_pred --ccCChhHHHHhhccCCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhc
Q 005969 87 --RHGCLDEVVSVFEDMPR--KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLS 152 (667)
Q Consensus 87 --~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 152 (667)
-..+++...++|..-.. -....-. -+-.|......+-++..++.+....-.++..-.+.++..|+
T Consensus 569 wvl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 569 WVLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34577777888876211 1111122 23345667788888889998877665666666777776665
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.50 E-value=34 Score=31.66 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC
Q 005969 381 TSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE 432 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (667)
......|+..+|...|+.. ..+.+......++.+|...|+.+.|..++..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445567777777766655 333334444555556666666666666665554
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.29 E-value=5.9 Score=29.59 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 005969 556 RALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
+..+-++.+....+.|++......+++|.+..++..|..+++-+..+ +.+....|..++.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence 34445555555667788888888888888888888888888887544 33333366666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.17 E-value=11 Score=30.50 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=43.5
Q ss_pred HhhccCChhHHHHhhccCCC--C----CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcc
Q 005969 84 LYGRHGCLDEVVSVFEDMPR--K----SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSN 153 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 153 (667)
...+.|++++|.+.|+.+.. | ..-+--.++.++-+.++++.|+..+++.++.....-...|...+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34466777777777777754 2 1223445666777778888888887777765433333455555555553
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.40 E-value=23 Score=28.91 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=35.7
Q ss_pred HhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCC-cchHHHHHHHHHH
Q 005969 384 AKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPD-IVSWNIVIAACAH 448 (667)
Q Consensus 384 ~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~ 448 (667)
...++.+++..++..+ -.|.....-..-...+...|+|++|..+|+.+.+.. ...|..-+.++|-
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 3477888888877766 233333333334445566667777777776666432 2244444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.99 E-value=36 Score=30.80 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=78.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH---cCC--CCCHHHHHHHHHHHhccCChhhHHHHHHHHH----HhCCCCCchhHHh
Q 005969 441 IVIAACAHNGDYKEVLELFKYMRA---ARI--YPDNYTFVSLLSACSKLCNLALGSSLHGLIK----KTEIISSDTFVCN 511 (667)
Q Consensus 441 ~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ 511 (667)
.++..+.+.|++++.+..+.+|.. ..+ .-+..+.++++...+...+.+...++++.-. +......--.+-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 345556666666666666665532 111 1234455666665555555554444443222 1111110112333
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC--------CC-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHhH
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMTD--------RN-------VITWTALISALGLNGFAQRALEKFREMEFL-GFKPDRVA 575 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~~--------~~-------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g~~p~~~~ 575 (667)
-|...|...+.+....++++.+.+ .| ...|..=|..|....+-.+...+|++...- .--|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 455566666666666666655541 01 124555566777666666666666665431 12344443
Q ss_pred HHHHHHHH-----hccCCHHHHHHHHHHhHHhh
Q 005969 576 LIAVLTAC-----RHGGLVREGMELFERMNRSY 603 (667)
Q Consensus 576 ~~~li~~~-----~~~g~~~~A~~~~~~~~~~~ 603 (667)
.. .|+-| .+.|.+++|..=|-+..+.+
T Consensus 230 mG-vIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 230 MG-VIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred Hh-HHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 33 33333 45577776654444333443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.57 E-value=62 Score=33.23 Aligned_cols=123 Identities=8% Similarity=0.129 Sum_probs=73.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc---cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHH
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS---CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGL 84 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (667)
.|..||.---.....+.+..++..+... .|-..-|-.-.+ ..-+..+.+.++|++.+.. ++.+...|...+..
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAF 122 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHH
Confidence 4455554444444555566666666643 455554444444 3333677777777776653 46666666666655
Q ss_pred hh-ccCChhHHHHhhccCCC------CCchhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 85 YG-RHGCLDEVVSVFEDMPR------KSLVTWNSIVSIFGKHGFVEDCMFLFCELVR 134 (667)
Q Consensus 85 ~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (667)
+. ..|+.+.....|+.... .+...|...|..-..++++.....++++.++
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 44 34666666666665442 2445666667666677777777777777766
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.04 E-value=41 Score=30.80 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=69.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHhccCChhhHHHHHHHHHHh---CCCCCchhHHh
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTF-------VSLLSACSKLCNLALGSSLHGLIKKT---EIISSDTFVCN 511 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 511 (667)
+.+-..+.+++++|+..+.+....|+..|..+. ..+...|...|+.....+.....++. -..|.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344556788999999999999999887776543 44556677777665544443322211 11122344455
Q ss_pred HHHHHHHhc-CChHHHHHHHHhcCCC-----Ch----hhHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCHhH
Q 005969 512 MLIDMYGKC-GSIGSSVKIFNEMTDR-----NV----ITWTALISALGLNGFAQRALEKF----REMEFLGFKPDRVA 575 (667)
Q Consensus 512 ~l~~~~~~~-~~~~~A~~~~~~~~~~-----~~----~~~~~li~~~~~~~~~~~A~~~~----~~~~~~g~~p~~~~ 575 (667)
+|+..+... ..++....+.....+. .. ..-.-++..+.+.|.+.+|+.+. .++.+..-+|+..+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 555554433 2344444444443321 00 11122455555566665555433 33334444444433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.86 E-value=3.5 Score=23.31 Aligned_cols=25 Identities=24% Similarity=0.012 Sum_probs=11.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 542 TALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
..+...+...|++++|++.|++..+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.80 E-value=2.7 Score=25.21 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMIN 34 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 34 (667)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5789999999999999999999999876
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.73 E-value=11 Score=27.90 Aligned_cols=50 Identities=6% Similarity=-0.030 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHh
Q 005969 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKN 170 (667)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 170 (667)
+.-++.+-++.+....+.|++....+.+++|.+.+|+..|..+++-++..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33455666667777777888888888888888888888888888876643
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.89 E-value=43 Score=30.31 Aligned_cols=178 Identities=11% Similarity=0.086 Sum_probs=97.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh--
Q 005969 444 AACAHNGDYKEVLELFKYMRAARI--YPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK-- 519 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 519 (667)
..-.+.|++++|.+.|+.+..... +-...+.-.++.++-+.++.+.|....++..+.....|+. -|-.-+.+++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhc
Confidence 344578999999999999886531 2234566677778889999999999999888876555443 23333333331
Q ss_pred -----cCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 005969 520 -----CGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGME 594 (667)
Q Consensus 520 -----~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (667)
..+...+.+.+..+. .++.-|=...=...|......+... . ..-=..+.+.|.+.|.+-.|..
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~--------~~i~ryPnS~Ya~dA~~~i~~~~d~---L-A~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFK--------ELVQRYPNSRYAPDAKARIVKLNDA---L-AGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred cCCccccCHHHHHHHHHHHH--------HHHHHCCCCcchhhHHHHHHHHHHH---H-HHHHHHHHHHHHHhcChHHHHH
Confidence 112222222222222 1222222222222222222222110 0 0001234556777777777777
Q ss_pred HHHHhHHhhCCCCCc---chhHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 595 LFERMNRSYGVEPEM---DHYHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 595 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
-+++|.+. .+-+. ..+-.+..+|...|-.++|.+.-.-++
T Consensus 189 R~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 189 RFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 77777555 33333 234456667777777777776666553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.77 E-value=3 Score=23.72 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMINR 35 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 35 (667)
.+|..+...+...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46889999999999999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=80.72 E-value=48 Score=30.69 Aligned_cols=158 Identities=15% Similarity=0.045 Sum_probs=78.1
Q ss_pred ccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHH----HHHHHCCCcCChhhHHHHHHHhcccCc-----h
Q 005969 87 RHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLF----CELVRSEVALTESSFVGVIHGLSNEQD-----L 157 (667)
Q Consensus 87 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~li~~~~~~~~-----~ 157 (667)
+++++++|++++.. =...+.+.|+...|.++. +-+.+.+++++......++..+...+. .
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45666777766422 233455666665555443 333445666676665555555543321 2
Q ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHh
Q 005969 158 EFGEQIHGLVIKNG--FDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSV 235 (667)
Q Consensus 158 ~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 235 (667)
+-..+...+- +.+ ...|+..+..+...|.+.|++.+|+.-|-....++...+-.++......|...++
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------- 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------- 140 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------
Confidence 2223333333 222 2346788899999999999999998877666544444443333333333333322
Q ss_pred CCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHh
Q 005969 236 DIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKN 271 (667)
Q Consensus 236 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 271 (667)
|...-. .+-.+.-.+++..|...++...+.
T Consensus 141 -----dlfi~R-aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 -----DLFIAR-AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -----HHHHHH-HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -----hHHHHH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111111 222344557778888777766654
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.53 E-value=41 Score=34.43 Aligned_cols=149 Identities=17% Similarity=0.056 Sum_probs=80.7
Q ss_pred hcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHH
Q 005969 417 RTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGL 496 (667)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 496 (667)
..++++.|..++..+.+ ..-+.+...+.+.|-.++|+++ .+|+..- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 34455555555444442 2233444555556655555543 2332211 1123345666666655443
Q ss_pred HHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH
Q 005969 497 IKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVAL 576 (667)
Q Consensus 497 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~ 576 (667)
.. +..-|..|.++....+++..|.+.|....+ |..|+-.+...|+.+....+-....+.|. .
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~----- 724 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N----- 724 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----
Confidence 22 455677777777777777777777766543 45566666666666655555555555542 1
Q ss_pred HHHHHHHhccCCHHHHHHHHHH
Q 005969 577 IAVLTACRHGGLVREGMELFER 598 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~ 598 (667)
|...-+|...|+++++.+++.+
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHh
Confidence 2233345566777777777654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.50 E-value=4.2 Score=24.37 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=11.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREM 564 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~ 564 (667)
+++.|...|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444444
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.42 E-value=9.2 Score=33.30 Aligned_cols=76 Identities=16% Similarity=0.052 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh--CCCCCcchhHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSY--GVEPEMDHYHCVV 616 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~ 616 (667)
|.+.-++.+.+.+.+.+++...++-++. +| |..+-..+++.+|-.|++++|..-++-. ... ...+...+|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~-a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLA-ATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHH-hhcCcccchHHHHHHHHH
Confidence 4556677888999999999999988886 55 5667788999999999999998888766 331 2333345566666
Q ss_pred HH
Q 005969 617 DL 618 (667)
Q Consensus 617 ~~ 618 (667)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 54
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 9e-09
Identities = 106/741 (14%), Positives = 211/741 (28%), Gaps = 263/741 (35%)
Query: 8 SFNSIISAYSR-------CGYVEDALRMFLYMINRGFEPTQFTFGGLLS---CDSL---- 53
+ I+S + C V+D + +LS D +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPK------------------SILSKEEIDHIIMSK 58
Query: 54 NPVEGA-QLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR-KSLVT--- 108
+ V G +L ++L FV L Y ++S + R S++T
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY------KFLMSPIKTEQRQPSMMTRMY 112
Query: 109 -------WNSIVSIFGKHGFV--EDCMFLFCELVRSEVALTESSFVGVIHGL-------- 151
+N +F K+ V + +L ++ + L + V +I G+
Sbjct: 113 IEQRDRLYND-NQVFAKY-NVSRLQ---PYLKLRQALLELRPAKNV-LIDGVLGSGKTWV 166
Query: 152 ------SNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIR 205
S + + +I L +KN E ++ L + +Q W++
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 206 DVVSWNTIIGALAESENFGKALELYLRMSVDI-------VFPNQ-----TT-FVYVINSC 252
+ S + L +S+ + L L L ++ F TT F V +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL-LVLL---NVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 253 AGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWN 312
+ I + K + ++ +
Sbjct: 282 SAA---------TTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPRE------ 321
Query: 313 ALILGYASKSSPTSIFLLIELLQLG------YR-PNEFTFSHVLRSSLAFQLLQLHCLII 365
++P + ++ E ++ G ++ N + ++ SSL L
Sbjct: 322 ------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN----VLEPAEY 371
Query: 366 RMGYENYEYVLGSLMTSYAKSGLISDALA-FVTALNIPRAVVPANIIAGIYNRTGQYNET 424
R + ++ L+ F + +IP +
Sbjct: 372 R---KMFD------------------RLSVFPPSAHIPTIL------------------- 391
Query: 425 VKLLSQLERPDIVSWNIVIAACAHNGDYKEVL----ELFKYMRAARIYPDNYTFVSL--- 477
LS + W + +V+ +L KY + P T S+
Sbjct: 392 ---LSLI-------WF--------DVIKSDVMVVVNKLHKYSLVEK-QPKESTI-SIPSI 431
Query: 478 -LSACSKLCNLALGSSLHGLI----KKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFN- 531
L KL N +LH I + SD + L D Y ++
Sbjct: 432 YLELKVKLENEY---ALHRSIVDHYNIPKTFDSDDLIPPYL-DQY-----------FYSH 476
Query: 532 --------EMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583
E +R L + L+ FR FL K + TA
Sbjct: 477 IGHHLKNIEHPER-----MTLFRMVFLD---------FR---FLEQK-----IRHDSTAW 514
Query: 584 RHGGLVREGMELFERMN--RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPF---- 637
G + + +++ + Y + Y +V+ ++ + L + E+ + +
Sbjct: 515 NASGSI---LNTLQQLKFYKPY-ICDNDPKYERLVNAILDF--LPKIEENLICSKYTDLL 568
Query: 638 -----PPNALIWRTFLEGCQR 653
+ I+ + QR
Sbjct: 569 RIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 61/443 (13%), Positives = 128/443 (28%), Gaps = 122/443 (27%)
Query: 3 DRNVVSFNSIISAYS-RCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCD---SLNPVEG 58
D N S + S R ++ LR L ++ +E LL +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYE------NCLLVLLNVQNAKAWNA 261
Query: 59 AQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGK 118
L +L L V L H LD P + S+ K
Sbjct: 262 FNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLT--PDEVK-------SLLLK 309
Query: 119 HGFV---------EDC------MFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQI 163
++ E + + E +R +A + N + + +
Sbjct: 310 --YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-----------NWKHVNCDKLT 356
Query: 164 HGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMF-KDVEI-RDVVS--WNTIIGALAE 219
+I++ +L M+ + + +F I ++S W +I ++
Sbjct: 357 T--IIES--SLNVLEPAEYRKMFDRLS-------VFPPSAHIPTILLSLIWFDVIK--SD 403
Query: 220 SENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGK-----SIHAKVI----- 269
L Y +V I + + K ++H ++
Sbjct: 404 VMVVVNKLHKYS-----LVEKQPKESTISIP---SIYLELKVKLENEYALHRSIVDHYNI 455
Query: 270 KNALECDVFVGSALVDFY---------AKCDNLEGAHLCFSE-------ISNKNIVSWNA 313
+ D + L D Y ++ E L F + K
Sbjct: 456 PKTFDSDDLIPPYL-DQYFYSHIGHHLKNIEHPERMTL-FRMVFLDFRFLEQK------- 506
Query: 314 LILGYASKSSPTSIFLLIELLQLGYR----PNEFTFSHVLRSSLAFQLLQLHCLIIRMGY 369
+ + ++ SI ++ L+ Y+ N+ + ++ + L F L ++ +I
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKYERLVNAILDF-LPKIEENLIC--S 562
Query: 370 ENYEYVLGSLMTSYAKSGLISDA 392
+ + + +LM + +A
Sbjct: 563 KYTDLLRIALM--AEDEAIFEEA 583
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 1e-07
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 414 IYNRTGQYNETVKLLSQLER-------PDIVSWNIVIAACAHNGDYKEVLELFKYMRAAR 466
T Q LL + +N V+ A G +KE++ + ++ A
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 467 IYPDNYTFVSLLSACSK 483
+ PD ++ + L +
Sbjct: 196 LTPDLLSYAAALQCMGR 212
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 6e-07
Identities = 26/192 (13%), Positives = 56/192 (29%), Gaps = 10/192 (5%)
Query: 458 LFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY 517
L R A P LL +L + + G + ++ +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRL-LAFFKCC 137
Query: 518 GKCGSIGSSVKIFNEMTDR-------NVITWTALISALGLNGFAQRALEKFREMEFLGFK 570
+ + + + + + A++ G + + ++ G
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 571 PDRVALIAVLTAC-RHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAE 629
PD ++ A L R E+M++ G++ + ++ R LK
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVH 256
Query: 630 KIITTMPFPPNA 641
K+ T PP
Sbjct: 257 KVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.5 bits (111), Expect = 1e-05
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 5 NVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSC 50
+ +N+++ ++R G ++ + + + + G P ++ L C
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.5 bits (98), Expect = 5e-04
Identities = 8/120 (6%), Positives = 33/120 (27%), Gaps = 7/120 (5%)
Query: 141 ESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFK 200
E ++ + L+ + G + + + + A +
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 201 DV-------EIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCA 253
++ + +N ++ A F + + + + + P+ ++ +
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.74 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.68 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.66 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.64 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.51 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.44 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.44 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.44 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.43 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.43 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.42 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.41 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.38 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.38 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.38 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.38 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.36 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.36 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.35 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.33 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.31 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.31 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.31 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.29 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.29 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.23 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.23 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.23 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.21 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.21 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.2 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.18 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.17 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.17 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.14 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.13 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.11 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.1 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.07 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.07 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.04 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.0 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.97 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.97 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.96 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.95 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.95 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.94 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.9 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.87 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.85 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.77 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.76 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.74 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.7 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.66 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.65 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.65 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.63 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.57 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.57 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.57 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.55 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.54 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.53 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.52 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.51 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.5 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.47 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.44 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.36 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.35 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.33 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.32 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.29 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.29 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.28 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.28 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.28 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.26 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.25 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.24 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.23 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.23 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.22 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.22 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.2 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.2 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.19 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.19 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.19 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.19 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.18 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.16 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.14 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.14 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.11 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.08 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.07 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.07 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.06 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.05 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.04 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.02 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.01 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.01 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.01 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.0 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.0 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.99 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.97 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.97 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.96 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.96 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.94 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.93 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.93 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.93 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.92 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.91 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.91 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.89 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.89 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.84 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.82 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.82 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.82 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.77 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.76 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.75 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.68 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.67 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.66 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.65 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.61 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.61 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.58 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.56 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.52 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.49 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.44 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.44 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.43 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.41 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.38 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.36 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.33 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.3 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.25 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.24 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.19 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.15 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.11 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.07 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.06 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.06 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.06 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.03 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.9 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.81 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.76 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.65 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.57 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.55 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.4 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.28 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.03 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.94 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.79 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.73 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.6 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.46 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.41 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.35 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.2 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.94 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.89 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.58 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.29 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.16 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.02 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.92 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.6 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.41 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.22 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.21 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.07 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.49 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.1 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.92 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 90.92 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.64 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.93 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.75 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 88.84 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.79 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.49 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 88.07 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.35 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.05 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.79 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.38 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.06 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.8 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.63 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 84.37 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.33 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 83.31 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.7 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 81.42 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.4 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.79 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-38 Score=332.08 Aligned_cols=494 Identities=9% Similarity=-0.059 Sum_probs=366.0
Q ss_pred hhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHH
Q 005969 85 YGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIH 164 (667)
Q Consensus 85 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 164 (667)
+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.+ ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677788888888888888999999999999999999999999999985 4588899999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCC-------------------CchhHHHHHHHHHccCChhH
Q 005969 165 GLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIR-------------------DVVSWNTIIGALAESENFGK 225 (667)
Q Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~ 225 (667)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987643 678899999999999999999999999965433 37799999999999999999
Q ss_pred HHHHHHHhHhCCcCCCh-hhHHHHHHHhhccCChhHH--HHH-HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHh
Q 005969 226 ALELYLRMSVDIVFPNQ-TTFVYVINSCAGLQNSILG--KSI-HAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFS 301 (667)
Q Consensus 226 a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 301 (667)
|+++|++|.+. .|+. ..+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 99999999875 3543 3444444444333322221 111 4455555555566778888899999999999999999
Q ss_pred ccCC--CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHH
Q 005969 302 EISN--KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGS 378 (667)
Q Consensus 302 ~~~~--~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (667)
++.+ ++..+|+.++..|.+.|+.+ |..+|.++.+.+.. +..++ ..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~-------------------------------~~ 344 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVY-------------------------------PL 344 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTH-------------------------------HH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHH-------------------------------HH
Confidence 9987 78888888888888888888 88888888765422 33333 36
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHH
Q 005969 379 LMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLEL 458 (667)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 458 (667)
++..+.+.|++++|.++++.+ . .....+..+|+.++..|.+.|++++|.++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~----------------------------~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDL----------------------------V-DRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH----------------------------H-HHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH----------------------------H-hhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 677777888888888765543 1 11234566777777888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---
Q 005969 459 FKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--- 535 (667)
Q Consensus 459 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 535 (667)
|+++.+.. +.+..+|..++.+|.+.|++++|.++++++.+.+ |.+..++..++.+|.+.|++++|.++|+++.+
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88877642 3356678888888888888888888888877664 44677888888888888888888888887762
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc
Q 005969 536 RNVITWTALISALGLNGFAQRALEKFREMEFL----GFKPD--RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 536 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (667)
.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+. + +.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~ 550 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-S-TNDA 550 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-SCCH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-CCCh
Confidence 46778888888888888888888888888775 66777 568888888888888888888888888554 2 4467
Q ss_pred chhHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 005969 610 DHYHCVVDLLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEG 650 (667)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~ 650 (667)
.+|..+..+|.+.|++++|.+.++++. ..| +...+..+...
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 788888888888888888888888873 444 34555544443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=319.87 Aligned_cols=470 Identities=7% Similarity=-0.040 Sum_probs=384.3
Q ss_pred HhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHH
Q 005969 187 FQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHA 266 (667)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 266 (667)
.+.|....+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..++...|++++|..+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4456667777778888778888999999999999999999999999984 56888899999999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCC-------------------CcccHHHHHHHHhcCCChH-H
Q 005969 267 KVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNK-------------------NIVSWNALILGYASKSSPT-S 326 (667)
Q Consensus 267 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~-a 326 (667)
.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+.+ |
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 87543 668889999999999999999999999965443 3678999999999999999 9
Q ss_pred HHHHHHHHHcCCCCCHh-hHHHHHHHhhhhhhh--HH-----HHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHh
Q 005969 327 IFLLIELLQLGYRPNEF-TFSHVLRSSLAFQLL--QL-----HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTA 398 (667)
Q Consensus 327 ~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 398 (667)
...|++|.+.+ |+.. .+..+.......+.. .. +..+...+..+...+++.++..|.+.|++++|.++|+.
T Consensus 220 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 220 KECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999998864 4333 232222222111111 11 23334445556666777888999999999999999999
Q ss_pred c-CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH
Q 005969 399 L-NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTF 474 (667)
Q Consensus 399 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 474 (667)
+ ..+++...+..++.++.+.|++++|.++|+++. ..+..++..++.++.+.|++++|..+++++.+.. +.+..++
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 8 557888999999999999999999999999886 3577889999999999999999999999998653 5678899
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhC
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLN 551 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 551 (667)
..++..|.+.|++++|.++|+.+.+.. |.+..+|+.++..|.+.|++++|.++|+++. ..+..+|..++.+|.+.
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 999999999999999999999998864 5478899999999999999999999999876 34778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh---CCCCC--cchhHHHHHHHhhcCChH
Q 005969 552 GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSY---GVEPE--MDHYHCVVDLLVRYGHLK 626 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~ 626 (667)
|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++++++.+.. +..|+ ..+|..++.+|.+.|+++
T Consensus 455 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 455 GNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999863 4468899999999999999999999999995542 66777 679999999999999999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 627 EAEKIITTMP--FPPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 627 ~A~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
+|.++++++. .+.+..+|..+..+|.+.|+++.|....++
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999983 344799999999999999999999887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=243.65 Aligned_cols=184 Identities=14% Similarity=0.176 Sum_probs=174.1
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---------hhhHHHHHHHHHHhCCCCCch
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCN---------LALGSSLHGLIKKTEIISSDT 507 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 507 (667)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+.||.+|++.+. ++.|.++|++|.+.|..| |.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CH
Confidence 46888999999999999999999999999999999999999999987654 678999999999999776 99
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT----DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 583 (667)
.+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999997 5899999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 584 RHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
++.|++++|.+++++| ++.|..|+..||+.++..|.+.
T Consensus 186 ~~~g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999 5669999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=243.51 Aligned_cols=184 Identities=13% Similarity=0.078 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccC---------chHHHHHHHHHHHHhcCCCchH
Q 005969 107 VTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQ---------DLEFGEQIHGLVIKNGFDYELL 177 (667)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 177 (667)
..++.+|.+|++.|++++|+++|++|.+.|++||..+|+.||.+|++.+ .++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999999999999999999998654 4688999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHhhccCC----CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhh
Q 005969 178 VANSLVNMYFQCAGIWSAEKMFKDVE----IRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCA 253 (667)
Q Consensus 178 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 253 (667)
+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998886 57999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 005969 254 GLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKC 290 (667)
Q Consensus 254 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (667)
+.|++++|.+++++|.+.|..|+..+|+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-22 Score=202.57 Aligned_cols=371 Identities=13% Similarity=0.086 Sum_probs=227.5
Q ss_pred HHHHccCChhHHHHHHHHhHhCCcCCChh-hHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 005969 215 GALAESENFGKALELYLRMSVDIVFPNQT-TFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNL 293 (667)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (667)
..+.+.|++++|.+.+.++... .|+.. .+..+...+...|+.++|...++...+.. +.+...+..+...+.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3445556666666666555443 33332 23333333555566666666665555543 23455566666666666666
Q ss_pred HHHHHHHhccCC--C-CcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcC
Q 005969 294 EGAHLCFSEISN--K-NIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGY 369 (667)
Q Consensus 294 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 369 (667)
++|.+.|+++.. | +...|..+...+...|+.+ |...+.++.+. .|+.....
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~----------------------- 138 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVR----------------------- 138 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHH-----------------------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH-----------------------
Confidence 666666665532 2 2234555555555555555 55555554442 22222111
Q ss_pred cchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHc
Q 005969 370 ENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHN 449 (667)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 449 (667)
..+...+...|++++|.+.|+++ ++ ....+..+|..+...+...
T Consensus 139 -------~~l~~~~~~~g~~~~A~~~~~~a----------------------------l~-~~p~~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 139 -------SDLGNLLKALGRLEEAKACYLKA----------------------------IE-TQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp -------HHHHHHHHTTSCHHHHHHHHHHH----------------------------HH-HCTTCHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHccCHHHHHHHHHHH----------------------------HH-hCCCCHHHHHHHHHHHHHc
Confidence 23444555556666666544432 00 0112345666777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 005969 450 GDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 529 (667)
|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+.. |.+..++..+...|...|++++|...
T Consensus 183 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777643 2345567777777777777888877777777664 43567777777778888888888877
Q ss_pred HHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC
Q 005969 530 FNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVE 606 (667)
Q Consensus 530 ~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (667)
|+++. .| +..+|..+...+.+.|++++|++.++++.+. .+.+..++..+...+.+.|++++|...++++.+. .+
T Consensus 260 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p 336 (388)
T 1w3b_A 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FP 336 (388)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CT
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 77765 23 4557777777888888888888888887775 2445667777888888888888888888877432 34
Q ss_pred CCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005969 607 PEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPP-NALIWRTFLEGCQRCR 655 (667)
Q Consensus 607 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~ 655 (667)
.+..++..+..++.+.|++++|.+.++++ ...| +...|..+...+...|
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 44567777888888888888888888776 3444 3566666666555544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-22 Score=200.55 Aligned_cols=343 Identities=11% Similarity=0.053 Sum_probs=261.6
Q ss_pred HhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChHHH
Q 005969 251 SCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPTSI 327 (667)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~a~ 327 (667)
.+.+.|++++|.+.+..+.+..+. +...+..+...+...|++++|...++...+ .+...|..+.
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg------------ 74 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG------------ 74 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH------------
Confidence 345567777777777776665322 344555566666677777777766655432 2233444444
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCc
Q 005969 328 FLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAV 405 (667)
Q Consensus 328 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~ 405 (667)
..+.+.|++++|.+.|+++ ..|.+.
T Consensus 75 -----------------------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (388)
T 1w3b_A 75 -----------------------------------------------------NVYKERGQLQEAIEHYRHALRLKPDFI 101 (388)
T ss_dssp -----------------------------------------------------HHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred -----------------------------------------------------HHHHHCCCHHHHHHHHHHHHHcCcchH
Confidence 4445555555555555544 223333
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCC--CCC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLE--RPD-IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACS 482 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 482 (667)
..+..+..++...|++++|.+.|+++. .|+ ...+..+...+...|++++|...|+++.+.. +-+..++..+...+.
T Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 180 (388)
T 1w3b_A 102 DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFN 180 (388)
T ss_dssp HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345555555555566666655666554 244 3456677788888999999999999998853 335778999999999
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALE 559 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~ 559 (667)
+.|+++.|...++++.+.+ |.+...+..+...+...|++++|...+++.. .| +..++..+...+...|++++|++
T Consensus 181 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999875 5578899999999999999999999999876 34 56789999999999999999999
Q ss_pred HHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-C
Q 005969 560 KFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-F 637 (667)
Q Consensus 560 ~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~ 637 (667)
.|+++.+. .| +..+|..+...+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++. .
T Consensus 259 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 259 TYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999985 55 4678999999999999999999999999655 56677899999999999999999999999984 4
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 638 PP-NALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 638 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
.| +..++..+...+.+.|+.+.|....++
T Consensus 335 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44 588999999999999999999887654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-20 Score=189.61 Aligned_cols=442 Identities=10% Similarity=-0.033 Sum_probs=237.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 005969 107 VTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMY 186 (667)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (667)
..|......+.+.|++++|++.|+++.+.+ |+...+..+..++...|++++|...++.+.+.+ +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 355666777788888888888888887754 677777777777878888888888887777664 22344555555555
Q ss_pred HhcCChhHHHHhhccCCC---CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHH
Q 005969 187 FQCAGIWSAEKMFKDVEI---RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKS 263 (667)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 263 (667)
.+.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------ 151 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER------------ 151 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH------------
Confidence 555555555544444321 12222222222222222222222222222222211221111110000
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCC-cccHHHHHHHHh---cCCChH-HHHHHHHHHH---
Q 005969 264 IHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKN-IVSWNALILGYA---SKSSPT-SIFLLIELLQ--- 335 (667)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~---~~~~~~-a~~~~~~m~~--- 335 (667)
.......|+..... .+.......... ..+..|+ ...+......+. +.|+++ |...+.++.+
T Consensus 152 ----~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 220 (514)
T 2gw1_A 152 ----KDKQENLPSVTSMA----SFFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220 (514)
T ss_dssp ---------CCCCHHHHH----HHHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred ----HhhccCCchhHHHH----HHHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence 00000111111111 111100000000 0011111 222333333333 378888 8888888776
Q ss_pred --cCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHH
Q 005969 336 --LGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANIIA 412 (667)
Q Consensus 336 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~ 412 (667)
....|+..... +.+..++..+...+...|++++|...++.. ...|+...+..+.
T Consensus 221 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~ 277 (514)
T 2gw1_A 221 EQLDKNNEDEKLK-----------------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMA 277 (514)
T ss_dssp HHTTTSTTCHHHH-----------------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred hhhccCccccccC-----------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHH
Confidence 32233322110 112334457788889999999999988876 2222255566667
Q ss_pred HHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhh
Q 005969 413 GIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLAL 489 (667)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 489 (667)
.++...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|+++.
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777766543 344566666677777777777777777776643 2244566666666777777777
Q ss_pred HHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C---C----hhhHHHHHHHHHh---CCChHHH
Q 005969 490 GSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R---N----VITWTALISALGL---NGFAQRA 557 (667)
Q Consensus 490 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~---~~~~~~A 557 (667)
|...++.+.+.. |.+...+..+...|...|++++|...++.+.+ | + ...+..+...+.. .|++++|
T Consensus 357 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A 434 (514)
T 2gw1_A 357 CETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434 (514)
T ss_dssp HHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH
Confidence 777777766653 33556666666777777777777776666542 1 1 2256666666666 6677777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 558 LEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 558 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
.+.++++.+.. +.+..++..+...|.+.|++++|...+++..+
T Consensus 435 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 435 TNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 77777666642 22355666666666677777777777766643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-20 Score=191.45 Aligned_cols=430 Identities=8% Similarity=-0.038 Sum_probs=276.7
Q ss_pred hhHHhhHHHHhhccCChhHHHHhhccCCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhc
Q 005969 75 AFVGTALLGLYGRHGCLDEVVSVFEDMPR--KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLS 152 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 152 (667)
...+..+...+.+.|++++|+..|+++.. |+...|..+..++...|++++|++.++++.+.+ +.+...+..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45667788899999999999999999863 888899999999999999999999999998865 345678999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC----CCchhHHHHHHHHHccCChhHHHH
Q 005969 153 NEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI----RDVVSWNTIIGALAESENFGKALE 228 (667)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~ 228 (667)
..|++++|...++.+.+.+. ++......++..+........+.+.+..+.. ++...+..-...............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999998763 4445555556555555555555554443331 222222221111222222222222
Q ss_pred HHHHhHhCCcCC--------C-hhhHHHHHHHhh---ccCChhHHHHHHHHHHH-----hcCCC--------CchHHHHH
Q 005969 229 LYLRMSVDIVFP--------N-QTTFVYVINSCA---GLQNSILGKSIHAKVIK-----NALEC--------DVFVGSAL 283 (667)
Q Consensus 229 ~~~~m~~~g~~p--------~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~~~--------~~~~~~~l 283 (667)
+...+......+ + ...+......+. +.|++++|...++.+.+ ....| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222222221111 1 222222222222 36777777777777766 21111 23344555
Q ss_pred HHHHHhcCChHHHHHHHhccCC--CCcccHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHH
Q 005969 284 VDFYAKCDNLEGAHLCFSEISN--KNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLH 361 (667)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 361 (667)
...+...|++++|...|++..+ |+...+.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~------------------------------------------------- 274 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYI------------------------------------------------- 274 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHH-------------------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHH-------------------------------------------------
Confidence 5555666666666655554432 2222333
Q ss_pred HHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC---CCCc
Q 005969 362 CLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE---RPDI 436 (667)
Q Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~ 436 (667)
.+...+...|++++|.+.++.. ..|.+...+..+..++...|++++|...+++.. ..+.
T Consensus 275 ----------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 338 (514)
T 2gw1_A 275 ----------------YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338 (514)
T ss_dssp ----------------HHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS
T ss_pred ----------------HHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH
Confidence 4444555555555555555554 233344455555556666666666666666543 2345
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhHHhH
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD----TFVCNM 512 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 512 (667)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|...++.+.+.....++ ...+..
T Consensus 339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 417 (514)
T 2gw1_A 339 FPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417 (514)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 677778888888889999999998887753 335667888888888899999999999888776432222 338888
Q ss_pred HHHHHHh---cCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 005969 513 LIDMYGK---CGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV 574 (667)
Q Consensus 513 l~~~~~~---~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~ 574 (667)
+...+.. .|++++|...++.+. .| +..++..+...|...|++++|.+.|++..+. .|+..
T Consensus 418 l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 8899999 899999999998876 23 5667888999999999999999999999885 56544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-19 Score=184.48 Aligned_cols=431 Identities=11% Similarity=-0.012 Sum_probs=275.4
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 005969 106 LVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNM 185 (667)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 185 (667)
...|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3467777888888888888888888887754 3466777778888888888888888888887765 3356667777777
Q ss_pred HHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHH
Q 005969 186 YFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIH 265 (667)
Q Consensus 186 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 265 (667)
+...|++++|.+.|+.+. .+....+..+..+...+....|...++++.... |+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~------------------------ 155 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EG------------------------ 155 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cc------------------------
Confidence 777777777777775332 122222222334444444556666666654321 00
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcc---cHHHHHHHHhcC--------CChH-HHHHHHHH
Q 005969 266 AKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIV---SWNALILGYASK--------SSPT-SIFLLIEL 333 (667)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~-a~~~~~~m 333 (667)
..+........+..+....+.+.+...+......+.. ....+...+... ++++ |...+.++
T Consensus 156 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 156 -------RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ----------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 0001111122333344455555555555555443332 222222222222 2455 66666666
Q ss_pred HHcCCCCCHh-hHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHH
Q 005969 334 LQLGYRPNEF-TFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANII 411 (667)
Q Consensus 334 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l 411 (667)
.+.. |+.. .+... ...+..+...+...|++++|.+.++.. ...|+...+..+
T Consensus 229 l~~~--p~~~~~~~~~------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 282 (537)
T 3fp2_A 229 LSAN--TVDDPLRENA------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL 282 (537)
T ss_dssp HC----CCCHHHHHHH------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHC--CCcchhhHHH------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHH
Confidence 5432 2211 11100 112235667888899999999999887 344446777778
Q ss_pred HHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChh
Q 005969 412 AGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLA 488 (667)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 488 (667)
..++...|++++|.+.+++..+ .+..++..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 283 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888887652 445677788888888888888888888887753 334567777888888888888
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----C----ChhhHHHHHHHHHhC--------
Q 005969 489 LGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----R----NVITWTALISALGLN-------- 551 (667)
Q Consensus 489 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~-------- 551 (667)
.|...++.+.+.. |.+...+..+...+...|++++|...|+.+.+ + ....+..+...+...
T Consensus 362 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 439 (537)
T 3fp2_A 362 ESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439 (537)
T ss_dssp HHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----C
T ss_pred HHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhh
Confidence 8888888888774 44677888888888888888888888887652 1 112234445566666
Q ss_pred --CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 552 --GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 552 --~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
|++++|+..+++..+.. +.+...+..+...|.+.|++++|.+.+++..+.
T Consensus 440 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 440 DEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888888888887752 334667788888888888888888888887544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-18 Score=174.40 Aligned_cols=304 Identities=14% Similarity=0.063 Sum_probs=157.0
Q ss_pred CchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 005969 206 DVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVD 285 (667)
Q Consensus 206 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 285 (667)
+...+..+...+.+.|++++|+.+|+++... .+.+..++..+..++...|++++|...++.+.+.+.. +...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 3445666666777777777777777776653 2334556666666677777777777777777666432 4566777777
Q ss_pred HHHhcCChHHHHHHHhccCCCCc------ccHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhH
Q 005969 286 FYAKCDNLEGAHLCFSEISNKNI------VSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQ 359 (667)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (667)
+|.+.|++++|.+.|+++.+.++ ..+..+...+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------------------- 143 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM--------------------------------------- 143 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---------------------------------------
Confidence 78888888888877777654222 222222211100
Q ss_pred HHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC---CC
Q 005969 360 LHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE---RP 434 (667)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~ 434 (667)
..+..+...+...|++++|...++.+ ..|.+...+..+..++...|++++|.+.|+++. ..
T Consensus 144 --------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 209 (450)
T 2y4t_A 144 --------------QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209 (450)
T ss_dssp --------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 00113445567778888888877665 233344444445555555555555555555443 23
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHH------------HHHHhccCChhhHHHHHHHHHHhC
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSL------------LSACSKLCNLALGSSLHGLIKKTE 501 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~ 501 (667)
+..+|..+...|...|++++|...|+++.+. .|+ ...+..+ ...+...|++++|...++.+.+..
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445555555555555555555555555542 222 2222222 334444444444444444444432
Q ss_pred CCCCc--hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 502 IISSD--TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 502 ~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
...+. ...+..+...+.+.|++++|...++.+. .| +...|..+..+|...|++++|...++++.+
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11000 1233444444444444444444444433 12 233444444444444444444444444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-19 Score=183.72 Aligned_cols=414 Identities=12% Similarity=0.000 Sum_probs=229.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 005969 210 WNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAK 289 (667)
Q Consensus 210 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (667)
|..+...+.+.|++++|++.|+++.... +.+...+..+..++...|++++|...++.+.+... .+...+..+..++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH
Confidence 3444445555555555555555554431 22334444444445555555555555555554432 244455555555666
Q ss_pred cCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHc------CCCCCHhhHHHHHHHhhhhhhhHHHH
Q 005969 290 CDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQL------GYRPNEFTFSHVLRSSLAFQLLQLHC 362 (667)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~ 362 (667)
.|++++|.+.|+.+.. +....+..+..+...+... +...+.++... ...|+.......+..+.....+
T Consensus 106 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV---- 180 (537)
T ss_dssp HTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH----
T ss_pred cCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH----
Confidence 6666666665543221 1111111222222233333 55555544321 2233333332222111110000
Q ss_pred HHHHhcCcchhh---hHHHHHHHHH--------hhCCHHHHHHHHHhc-CCCCC-cc-------hhHHHHHHHhhcCChh
Q 005969 363 LIIRMGYENYEY---VLGSLMTSYA--------KSGLISDALAFVTAL-NIPRA-VV-------PANIIAGIYNRTGQYN 422 (667)
Q Consensus 363 ~~~~~~~~~~~~---~~~~l~~~~~--------~~~~~~~a~~~~~~~-~~~~~-~~-------~~~~l~~~~~~~~~~~ 422 (667)
.........++. ....+...+. ..|++++|..+++.+ ...|+ .. .+..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 000000111111 1122222222 224677788877776 33333 22 3455566677778888
Q ss_pred HHHHHHhcCC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 423 ETVKLLSQLE--RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 423 ~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
+|...+++.. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|...++.+.+.
T Consensus 261 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 261 DAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 8888877765 3556666777777777888888888888777653 335667777777778888888888888877776
Q ss_pred CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-C----C
Q 005969 501 EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFK-P----D 572 (667)
Q Consensus 501 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~-p----~ 572 (667)
. |.+...+..+...|...|++++|...++++. .| +...+..+...+...|++++|.+.++++.+.... + .
T Consensus 340 ~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 N--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp C--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 4 3356777777888888888888888887765 23 4557777777888888888888888877663210 0 1
Q ss_pred HhHHHHHHHHHhcc----------CCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 573 RVALIAVLTACRHG----------GLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 573 ~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
...+..+...+... |++++|...++++... .+.+...+..+..++.+.|++++|.+.+++.
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11234445566666 8888888888877544 3344566777888888888888888888776
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-14 Score=154.94 Aligned_cols=549 Identities=12% Similarity=0.130 Sum_probs=299.0
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhH-hHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHH
Q 005969 6 VVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTF-GGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGL 84 (667)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (667)
....+.++..+...+...++..++-+..+.+ .|....+ +.++. .+...+-++-+.+...+. -+-+-+..+...
T Consensus 543 ~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n-~~e~~~LQTrlle---~Nl~~~pqvadail~~~~--fthyd~~~IA~L 616 (1630)
T 1xi4_A 543 LADITQIVDVFMEYNLIQQCTAFLLDALKNN-RPSEGPLQTRLLE---MNLMHAPQVADAILGNQM--FTHYDRAHIAQL 616 (1630)
T ss_pred ccCHHHHHHHHHhcCcHHHHHHHHHHHHhCC-ChhhhhHhHHHHH---HhhccchhHHHHHHhcCc--cccccHHHHHHH
Confidence 3445566666666677777777666666543 3333322 22222 112223344444555552 255556778888
Q ss_pred hhccCChhHHHHhhccCCC-------CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHH------------
Q 005969 85 YGRHGCLDEVVSVFEDMPR-------KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFV------------ 145 (667)
Q Consensus 85 ~~~~g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------ 145 (667)
|-+.|-++.|++.+..+.. .....=.-++..+++ =..+.++++++.|...+++-+.....
T Consensus 617 CE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~ 695 (1630)
T 1xi4_A 617 CEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLST 695 (1630)
T ss_pred HHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCH
Confidence 9999999999999987642 122223345555555 46789999999998766554433222
Q ss_pred -HHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---------------CCCch-
Q 005969 146 -GVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---------------IRDVV- 208 (667)
Q Consensus 146 -~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------~~~~~- 208 (667)
.+|..+-+.+.++.-.-.+.... +..-|+.+....|.+.++.|++.+.+++.++-. -+|..
T Consensus 696 ~~li~~fe~~~~~egl~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~p 773 (1630)
T 1xi4_A 696 QSLIELFESFKSFEGLFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLP 773 (1630)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCC
Confidence 23333333333333333333222 245688999999999999999999988876632 11110
Q ss_pred ---------hHH------------HHHHHHHccCChhHHHHHHHHhHhCCcCCChhhH-------------HHHHHHhhc
Q 005969 209 ---------SWN------------TIIGALAESENFGKALELYLRMSVDIVFPNQTTF-------------VYVINSCAG 254 (667)
Q Consensus 209 ---------~~~------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-------------~~ll~~~~~ 254 (667)
... ..|..|++.-++..+-.+.-.+..- .-+.... ..|+..+-+
T Consensus 774 li~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~--d~~e~~ik~ll~~v~~~~~~~~lv~~~ek 851 (1630)
T 1xi4_A 774 LIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDV--DCSEDVIKNLILVVRGQFSTDELVAEVEK 851 (1630)
T ss_pred ceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 011 1233333332222222222111111 0111111 122222222
Q ss_pred cCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH--------------------------------------
Q 005969 255 LQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGA-------------------------------------- 296 (667)
Q Consensus 255 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-------------------------------------- 296 (667)
.+++..-...++.-...|- .++.++|+|...|...++-.+.
T Consensus 852 rnrLkll~p~LE~~~~~g~-~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~el 930 (1630)
T 1xi4_A 852 RNRLKLLLPWLEARIHEGC-EEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLEL 930 (1630)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHH
Confidence 2333333333444344442 2555666666555543321111
Q ss_pred --------------HHHHhcc--------CC---------------------CCcccHHHHHHHHhcCCChH-HHHHHHH
Q 005969 297 --------------HLCFSEI--------SN---------------------KNIVSWNALILGYASKSSPT-SIFLLIE 332 (667)
Q Consensus 297 --------------~~~~~~~--------~~---------------------~~~~~~~~li~~~~~~~~~~-a~~~~~~ 332 (667)
.-+.++. .. .++.--...+++|...|.+. +++++++
T Consensus 931 i~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEK 1010 (1630)
T 1xi4_A 931 INVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEK 1010 (1630)
T ss_pred HHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHH
Confidence 0000000 00 11222344556677888888 8888887
Q ss_pred HHHcCC--CCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHH
Q 005969 333 LLQLGY--RPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANI 410 (667)
Q Consensus 333 m~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 410 (667)
..-.+- .-+....+.++.+..+...-+....+.+.+ ......+...+...|.+++|..+|++.+ .+..
T Consensus 1011 ivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd----~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~ 1080 (1630)
T 1xi4_A 1011 IVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD----NYDAPDIANIAISNELFEEAFAIFRKFD------VNTS 1080 (1630)
T ss_pred HHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh----hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHH
Confidence 763311 112223333333333332223333333322 1113346677778888888888888763 1112
Q ss_pred HHHHHh-hcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhh
Q 005969 411 IAGIYN-RTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLAL 489 (667)
Q Consensus 411 l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 489 (667)
.+..+. ..+++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++
T Consensus 1081 A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1081 AVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHH
Confidence 122222 6677777777777663 3556777777777788888887777553 456667777777888888888
Q ss_pred HHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 005969 490 GSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGF 569 (667)
Q Consensus 490 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~ 569 (667)
|.+++...++.. + ++...+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~--~-e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKA--R-ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHHHHhhc--c-cccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 888877766654 1 3333334777777777777544443 3445556666777777777777777777764
Q ss_pred CCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 570 KPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
..|..+..+|++.|++++|.+.+++.
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 35667777777777777777776644
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-18 Score=173.63 Aligned_cols=283 Identities=13% Similarity=0.076 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHH
Q 005969 374 YVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAH 448 (667)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 448 (667)
..+..+...+.+.|++++|...|+.+ ..|.+...+..+..++...|++++|...|+++.+ .+...+..+...|.+
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34445566666666666666666665 3444555566666666666666666666665542 234455666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhH
Q 005969 449 NGDYKEVLELFKYMRAARIYPDN----YTFVSL------------LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNM 512 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 512 (667)
.|++++|...|+++.+. .|+. ..+..+ ...+...|+++.|...++.+.+.. |.+...+..
T Consensus 107 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 182 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELREL 182 (450)
T ss_dssp TTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHH
Confidence 66666666666666653 2332 333333 223556666666666666666553 335566666
Q ss_pred HHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHH---------
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAV--------- 579 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l--------- 579 (667)
+...|...|++++|.+.|+.+. ..+..+|..+...|...|++++|+..|+++... .|+ ...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH
Confidence 6666666666666666666654 234556666666666666666666666666653 343 2233333
Q ss_pred ---HHHHhccCCHHHHHHHHHHhHHhhCCCCC-----cchhHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHH
Q 005969 580 ---LTACRHGGLVREGMELFERMNRSYGVEPE-----MDHYHCVVDLLVRYGHLKEAEKIITTMP-F-PPNALIWRTFLE 649 (667)
Q Consensus 580 ---i~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~ 649 (667)
...|...|++++|...++++... .|+ ...+..+..++.+.|++++|.+.++++. . +.+..+|..+..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 55666666666666666666433 232 2345566666666666666666666652 2 234566666666
Q ss_pred HHHhcCChhHHhhhhh
Q 005969 650 GCQRCRIAKYDTLNST 665 (667)
Q Consensus 650 ~~~~~~~~~~a~~~~~ 665 (667)
+|...|+.+.|...++
T Consensus 338 ~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHH
Confidence 6666666666665544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-14 Score=151.32 Aligned_cols=363 Identities=12% Similarity=0.066 Sum_probs=241.7
Q ss_pred cchhhHHHHHHHHHhCC-CCCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGL-FCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCEL 132 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 132 (667)
.+.++.++++++.-.+. +..+....+.|+.+..+. +.....+..+...+-+ ...+...+...|.+++|.++|++.
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 55555555555552221 123344445555555444 3344444444443222 344666777788888888888774
Q ss_pred HHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHH
Q 005969 133 VRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNT 212 (667)
Q Consensus 133 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 212 (667)
. -.....+.++. ..+++++|.++.+.. -+..+|..+..++...|++++|...|.+. .|...|..
T Consensus 1076 ~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~e 1139 (1630)
T 1xi4_A 1076 D-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYME 1139 (1630)
T ss_pred C-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHH
Confidence 2 11122222322 556777777777754 34677888888888888888888888665 56777888
Q ss_pred HHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 005969 213 IIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDN 292 (667)
Q Consensus 213 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 292 (667)
++..+.+.|++++|.+.|...++.. ++....+.+..+|++.+++++.....+ .++...+..+...|...|+
T Consensus 1140 Va~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~ 1210 (1630)
T 1xi4_A 1140 VVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM 1210 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCC
Confidence 8888888888888888888766543 333333447777888887775443321 3355566678888888888
Q ss_pred hHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcc
Q 005969 293 LEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYEN 371 (667)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (667)
+++|..+|... ..|..+...+.+.|+++ |.+.+++. .+..+|..+-.+|...+.++......- ++..
T Consensus 1211 YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl-~Iiv 1278 (1630)
T 1xi4_A 1211 YDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL-HIVV 1278 (1630)
T ss_pred HHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH-hhhc
Confidence 88888888875 47888888888888888 88888765 345667666666666666655444433 3666
Q ss_pred hhhhHHHHHHHHHhhCCHHHHHHHHHhc-C-CCCCcchhHHHHHHHhh--cCChhHHHHHHhcCCC--------CCcchH
Q 005969 372 YEYVLGSLMTSYAKSGLISDALAFVTAL-N-IPRAVVPANIIAGIYNR--TGQYNETVKLLSQLER--------PDIVSW 439 (667)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--------~~~~~~ 439 (667)
++..+..++..|.+.|.+++|..+++.. + .+.....|..+...+.+ .++..++.+.|..-.. .+...|
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW 1358 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLW 1358 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHH
Confidence 7777889999999999999999999876 3 33444455555555554 4556666666654332 345679
Q ss_pred HHHHHHHHHcCChhHHHH
Q 005969 440 NIVIAACAHNGDYKEVLE 457 (667)
Q Consensus 440 ~~li~~~~~~g~~~~A~~ 457 (667)
.-++..|.+.|+++.|..
T Consensus 1359 ~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1359 AELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHhcccHHHHHH
Confidence 999999999999999874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.4e-17 Score=153.75 Aligned_cols=344 Identities=13% Similarity=0.133 Sum_probs=141.1
Q ss_pred hccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHH
Q 005969 86 GRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHG 165 (667)
Q Consensus 86 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 165 (667)
-+.|++++|.++++++.+|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35688999999999996664 8999999999999999999999653 678899999999999999999999888
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhH
Q 005969 166 LVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTF 245 (667)
Q Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 245 (667)
..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77764 45578899999999999999999988864 67779999999999999999999999976 378
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH
Q 005969 246 VYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT 325 (667)
Q Consensus 246 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 325 (667)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Y------- 217 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYY------- 217 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHH-------
Confidence 88888888888888888888877 267888888888888888888866655543 2222222344444
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CC-CC
Q 005969 326 SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NI-PR 403 (667)
Q Consensus 326 a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~ 403 (667)
.+.|++++|..+++.. +. +-
T Consensus 218 ----------------------------------------------------------ek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 218 ----------------------------------------------------------QDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp ----------------------------------------------------------HHTTCHHHHHHHHHHHTTSTTC
T ss_pred ----------------------------------------------------------HHCCCHHHHHHHHHHHhCCcHH
Confidence 4444444444444443 11 11
Q ss_pred CcchhHHHHHHHh--hcCChhHHHHHHhcCCC--------CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 005969 404 AVVPANIIAGIYN--RTGQYNETVKLLSQLER--------PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYT 473 (667)
Q Consensus 404 ~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 473 (667)
....|.-+.-.++ +.++..+..+.|..-.. .+...|.-+...|...++++.|.. .|.++ +|+...
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h--~~~a~~ 314 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNH--PTDAWK 314 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHS--TTTTCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhC--Chhhhh
Confidence 2222222222222 22333334444443221 356788889999999999998876 44443 334333
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhc
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEM 533 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 533 (667)
-..+.....+..+.+.-.+...-..+. .|...+.|+.++...=+...+.++|+..
T Consensus 315 ~~~f~~~~~kv~n~elyYkai~fyl~~-----~p~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 315 EGQFKDIITKVANVELYYRAIQFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHH-----CGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred hHHHHHHHhchhHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 334444445555555555544444433 3445666766666655666665555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.9e-16 Score=148.39 Aligned_cols=284 Identities=10% Similarity=-0.013 Sum_probs=237.3
Q ss_pred cchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHH
Q 005969 370 ENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIA 444 (667)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 444 (667)
..++.++..+...+...|++++|.++++.+ ..|.+...+..++.++...|++++|...++++.+ .+...|..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 344555567888899999999999999998 5666677777888999999999999999998763 45678888999
Q ss_pred HHHHcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh
Q 005969 445 ACAHNG-DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI 523 (667)
Q Consensus 445 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 523 (667)
.+...| ++++|...|++..+.. +.+...+..+...+...|+++.|...++.+.+.. |.+...+..+...|...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhhH
Confidence 999999 9999999999998754 3356788899999999999999999999999885 43567788899999999999
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC--------CCCCHhHHHHHHHHHhccCCHHHH
Q 005969 524 GSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLG--------FKPDRVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 524 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--------~~p~~~~~~~li~~~~~~g~~~~A 592 (667)
++|...++...+ .+...+..+...+...|++++|...+++..+.. .+.+..++..+...+...|++++|
T Consensus 176 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999998773 356788999999999999999999999998742 123356899999999999999999
Q ss_pred HHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HhcCChh
Q 005969 593 MELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEGC-QRCRIAK 658 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~-~~~~~~~ 658 (667)
...+++..+. .+.+...+..+..++.+.|++++|.+.+++.. ..| +...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999655 34567889999999999999999999999984 555 577777777777 4556543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-15 Score=146.44 Aligned_cols=319 Identities=11% Similarity=-0.002 Sum_probs=211.6
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHh
Q 005969 277 VFVGSALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSS 352 (667)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~ 352 (667)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|+++ |...+.+..+.. |+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~--------- 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFT--------- 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcc---------
Confidence 44556666777777777777777776543 23445555555556666666 666665555431 1111
Q ss_pred hhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCC----CcchhHHHHHHHhhcCChhHHHHH
Q 005969 353 LAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NIPR----AVVPANIIAGIYNRTGQYNETVKL 427 (667)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 427 (667)
..+..+...+...|++++|...++.. ...| +...+..+.....
T Consensus 72 ---------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------- 119 (359)
T 3ieg_A 72 ---------------------AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------- 119 (359)
T ss_dssp ---------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------
T ss_pred ---------------------hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------
Confidence 11124555555566666666655544 2222 1111111110000
Q ss_pred HhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch
Q 005969 428 LSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT 507 (667)
Q Consensus 428 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 507 (667)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++.|...++.+.+.. |.+.
T Consensus 120 --------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 188 (359)
T 3ieg_A 120 --------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNT 188 (359)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCH
T ss_pred --------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH
Confidence 0011222567778888888888888887753 4466778888888888889999988888888764 4477
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC--CCC-hhhHH------------HHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN-VITWT------------ALISALGLNGFAQRALEKFREMEFLGFKPD 572 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~------------~li~~~~~~~~~~~A~~~~~~~~~~g~~p~ 572 (667)
..+..+...|...|++++|...++... .|+ ...+. .+...+...|++++|+..++++.+. .|+
T Consensus 189 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~ 266 (359)
T 3ieg_A 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPS 266 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 888888888888899999988888776 233 22232 2366688899999999999999885 344
Q ss_pred -H----hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHH
Q 005969 573 -R----VALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPN-ALIWR 645 (667)
Q Consensus 573 -~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 645 (667)
. ..+..+..++...|++++|...+++..+. .+.+...+..+..++.+.|++++|.+.+++. ...|+ ...+.
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 2 23556778899999999999999998654 3446778899999999999999999999988 45565 55666
Q ss_pred HHHHHHHh
Q 005969 646 TFLEGCQR 653 (667)
Q Consensus 646 ~l~~~~~~ 653 (667)
.+..+...
T Consensus 345 ~l~~~~~~ 352 (359)
T 3ieg_A 345 GLEKAQRL 352 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-15 Score=148.46 Aligned_cols=285 Identities=13% Similarity=0.068 Sum_probs=237.2
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHH
Q 005969 373 EYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACA 447 (667)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 447 (667)
+..+..+...+...|++++|...|+.. ..|.+...+..+..++...|++++|...+++..+ .+...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344557888899999999999999988 5666778889999999999999999999998763 35577888999999
Q ss_pred HcCChhHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHh
Q 005969 448 HNGDYKEVLELFKYMRAARIYP----DNYTFVSL------------LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCN 511 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 511 (667)
..|++++|...++++.+. .| +...+..+ ...+...|+++.|...++.+.+.. |.+...+.
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 158 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRE 158 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHH
Confidence 999999999999999875 45 33344444 477889999999999999999875 45788999
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHH----------
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALI---------- 577 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~---------- 577 (667)
.+...+...|++++|...++.+.+ .+...+..+...+...|++++|.+.+++..+. .|+ ...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 999999999999999999998763 36678999999999999999999999999985 454 33333
Q ss_pred --HHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-----chhHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 005969 578 --AVLTACRHGGLVREGMELFERMNRSYGVEPEM-----DHYHCVVDLLVRYGHLKEAEKIITTMP--FPPNALIWRTFL 648 (667)
Q Consensus 578 --~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~ 648 (667)
.+...+.+.|++++|...++++... .|+. ..+..+..++...|++++|.+.+++.. .+.+..+|..+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2366789999999999999999655 2332 235568889999999999999999883 344788999999
Q ss_pred HHHHhcCChhHHhhhhhc
Q 005969 649 EGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 649 ~~~~~~~~~~~a~~~~~~ 666 (667)
..+...|+.+.|....++
T Consensus 314 ~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999999887764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-15 Score=143.14 Aligned_cols=331 Identities=11% Similarity=0.087 Sum_probs=123.0
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChhHHhhHHHHh
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAFVGTALLGLY 85 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (667)
+|..|+.++.+.|++++|++.|.+. +|..+|..+.. |... ++++|...++...+. .+++.+.+.|+.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CccchhHHHHHHHH
Confidence 5556666666666666666666432 34445555555 3333 555555555544442 23345555555666
Q ss_pred hccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHH
Q 005969 86 GRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHG 165 (667)
Q Consensus 86 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 165 (667)
.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..+..++.+.|++++|.+.+.
T Consensus 105 ~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 105 AKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp ----CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 666666655555532 44455555666666666666666666544 245555555555555555555555
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhH
Q 005969 166 LVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTF 245 (667)
Q Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 245 (667)
.+ .++.+|..++.+|+..|+++.|......+. .++.....++..|.+.|.+++|+.+++....
T Consensus 173 KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~---------- 235 (449)
T 1b89_A 173 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG---------- 235 (449)
T ss_dssp HH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----------
T ss_pred Hc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC----------
Confidence 44 245555555555555555555555444433 2222233455555555555555555554432
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHh--cCChHHHHHHHhccCC--------CCcccHHHHH
Q 005969 246 VYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAK--CDNLEGAHLCFSEISN--------KNIVSWNALI 315 (667)
Q Consensus 246 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~--------~~~~~~~~li 315 (667)
.. +-....|+-|.-+|++ -+++.+..+.|..-.. .+...|.-+.
T Consensus 236 -------------------------le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 236 -------------------------LE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp -------------------------ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred -------------------------Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 21 1122333333333333 2344444444443322 2345666777
Q ss_pred HHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHH
Q 005969 316 LGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALA 394 (667)
Q Consensus 316 ~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 394 (667)
-.|.+.++++ |... |.+. .|+...-..+.....+....++.-.+..-=+.-.|..++.|+.++...=+...+.+
T Consensus 290 ~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~ 364 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVN 364 (449)
T ss_dssp HHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHH
T ss_pred HHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHH
Confidence 7777777777 6553 3332 22222222233333333333444444443334455567788888887888888888
Q ss_pred HHHhcCCCCCcch
Q 005969 395 FVTALNIPRAVVP 407 (667)
Q Consensus 395 ~~~~~~~~~~~~~ 407 (667)
+++..+.-|-..+
T Consensus 365 ~~~~~~~l~l~~~ 377 (449)
T 1b89_A 365 YFSKVKQLPLVKP 377 (449)
T ss_dssp HHHHTTCTTTTHH
T ss_pred HHHHcCCcHHHHH
Confidence 7776654444433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=148.17 Aligned_cols=279 Identities=9% Similarity=-0.006 Sum_probs=216.3
Q ss_pred HHHhhCCHHHHHH-HHHhc-CCCC-----CcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCC
Q 005969 382 SYAKSGLISDALA-FVTAL-NIPR-----AVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGD 451 (667)
Q Consensus 382 ~~~~~~~~~~a~~-~~~~~-~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 451 (667)
.+...|++++|.+ .++.. ...+ +...+..+...+...|++++|...|+++.+ .+...+..+...+...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3445588889988 88765 2111 355677888999999999999999998763 455678888999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhH---------------HHHH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNM---------------LIDM 516 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~ 516 (667)
+++|...++++.+.. +.+..++..+...+...|+.+.|...++.+.+.... +...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA--YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT--TGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999998864 447788999999999999999999999999887532 3333321 1333
Q ss_pred HHhcCChHHHHHHHHhcC--CC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHH
Q 005969 517 YGKCGSIGSSVKIFNEMT--DR---NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVRE 591 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 591 (667)
+...|++++|...++.+. .| +..++..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 348899999999999887 34 46788999999999999999999999998852 3357789999999999999999
Q ss_pred HHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCC------------CHHHHHHHHHHHHhcCChh
Q 005969 592 GMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPP------------NALIWRTFLEGCQRCRIAK 658 (667)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p------------~~~~~~~l~~~~~~~~~~~ 658 (667)
|...++++... .+.+...+..+..++.+.|++++|.+.+++.. ..| ...+|..+..++...|+.+
T Consensus 270 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 270 AVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 99999998655 34556788999999999999999999998872 122 1689999999999999999
Q ss_pred HHhhhhhc
Q 005969 659 YDTLNSTK 666 (667)
Q Consensus 659 ~a~~~~~~ 666 (667)
.|..+.++
T Consensus 348 ~A~~~~~~ 355 (368)
T 1fch_A 348 AYGAADAR 355 (368)
T ss_dssp GHHHHHTT
T ss_pred hHHHhHHH
Confidence 99887664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-14 Score=139.46 Aligned_cols=239 Identities=11% Similarity=0.012 Sum_probs=166.6
Q ss_pred HHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcC-ChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhH
Q 005969 381 TSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTG-QYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKE 454 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 454 (667)
..+...|++++|...++.+ ..|.+...+..+...+...| ++++|...|++..+ .+...|..+...+...|++++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHH
Confidence 3344445555555555444 23334444445555555555 55555556655442 345567778888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 455 VLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 455 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
|...++++.+.. +.+...+..+...+...|+++.|...++.+.+.. |.+...+..+...+...|++++|...++...
T Consensus 144 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 144 AMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 888888887753 2344566667778888888888888888887764 4467788888888888888888888887665
Q ss_pred C-----------C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 535 D-----------R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 535 ~-----------~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+ | +...+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 2 2 34688888899999999999999999988852 335678888999999999999999999987433
Q ss_pred hCCCCCcchhHHHHHHH-hhcCCh
Q 005969 603 YGVEPEMDHYHCVVDLL-VRYGHL 625 (667)
Q Consensus 603 ~~~~~~~~~~~~l~~~~-~~~g~~ 625 (667)
.+.+...+..+..++ ...|+.
T Consensus 300 --~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 --RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp --CSCCHHHHHHHHHHHHTTTTC-
T ss_pred --CCCchHHHHHHHHHHHHHhCch
Confidence 233556677777777 445543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-13 Score=138.17 Aligned_cols=156 Identities=13% Similarity=-0.019 Sum_probs=96.0
Q ss_pred chHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CChhhHHHHHHHHHHhCCCCCch
Q 005969 437 VSWNIVIAACAH----NGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKL-----CNLALGSSLHGLIKKTEIISSDT 507 (667)
Q Consensus 437 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~ 507 (667)
..+..+...|.. .+++++|..+|++..+.| +...+..+...|... ++.++|...+++..+.+ ++
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~ 328 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DA 328 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CH
Confidence 344444444544 566666666666666543 334444455555544 66777777777666654 34
Q ss_pred hHHhHHHHHHHhcC---ChHHHHHHHHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 005969 508 FVCNMLIDMYGKCG---SIGSSVKIFNEMTD-RNVITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVALIAV 579 (667)
Q Consensus 508 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 579 (667)
..+..+...|...| +.++|.+.|+...+ .+...+..|...|.. .+++++|.++|++..+.| ++..+..|
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 55566666665544 56667777766553 355566666666666 667777777777777654 45566666
Q ss_pred HHHHhc----cCCHHHHHHHHHHhHHh
Q 005969 580 LTACRH----GGLVREGMELFERMNRS 602 (667)
Q Consensus 580 i~~~~~----~g~~~~A~~~~~~~~~~ 602 (667)
...|.. .+++++|..+|++....
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 666666 67777777777777444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-13 Score=139.35 Aligned_cols=348 Identities=9% Similarity=-0.035 Sum_probs=209.7
Q ss_pred CchHHHHHHHHHHHh----cCChhHHHHhhccCCC-CCchhHHHHHHHHHc----cCChhHHHHHHHHhHhCCcCCChhh
Q 005969 174 YELLVANSLVNMYFQ----CAGIWSAEKMFKDVEI-RDVVSWNTIIGALAE----SENFGKALELYLRMSVDIVFPNQTT 244 (667)
Q Consensus 174 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t 244 (667)
.+...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 366777777777777 7888888888876543 456677777777777 788888888888877664 3444
Q ss_pred HHHHHHHhhc----cCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHhccCC-CCcccHHHHH
Q 005969 245 FVYVINSCAG----LQNSILGKSIHAKVIKNALECDVFVGSALVDFYAK----CDNLEGAHLCFSEISN-KNIVSWNALI 315 (667)
Q Consensus 245 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li 315 (667)
+..+-..+.. .++.++|...++...+.| +...+..|...|.. .++.++|.+.|++..+ .+...+..+-
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4445455554 667788888887777665 44555666666665 6677777777766543 3444455555
Q ss_pred HHHhc----CCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHh----h
Q 005969 316 LGYAS----KSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAK----S 386 (667)
Q Consensus 316 ~~~~~----~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 386 (667)
..|.. .++.+ |...+.+..+.| +...+ ..+...|.. .
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~-------------------------------~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQ-------------------------------LHLADMYYFGIGVT 236 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH-------------------------------HHHHHHHHHTSSSC
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHH-------------------------------HHHHHHHHcCCCCC
Confidence 55554 55555 666666554432 11111 244444443 5
Q ss_pred CCHHHHHHHHHhcCCCCCcchhHHHHHHHhh----cCChhHHHHHHhcCCC-CCcchHHHHHHHHHHc-----CChhHHH
Q 005969 387 GLISDALAFVTALNIPRAVVPANIIAGIYNR----TGQYNETVKLLSQLER-PDIVSWNIVIAACAHN-----GDYKEVL 456 (667)
Q Consensus 387 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~ 456 (667)
++.++|.+.|+..-...+...+..+...+.. .+++++|.+.|++..+ .+...+..+...|... +++++|.
T Consensus 237 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 6666666666665333344444555555554 5666666666665543 3444555555555555 5666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccC---ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh----cCChHHHHHH
Q 005969 457 ELFKYMRAARIYPDNYTFVSLLSACSKLC---NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK----CGSIGSSVKI 529 (667)
Q Consensus 457 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 529 (667)
..|++..+.| +...+..+...|...| +.++|.+.+++..+.+ ++..+..|...|.. .+++++|...
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 6666666643 3334444444444434 5566666666666553 45566666666665 5666666666
Q ss_pred HHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 005969 530 FNEMTD-RNVITWTALISALGL----NGFAQRALEKFREMEFLG 568 (667)
Q Consensus 530 ~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g 568 (667)
|+...+ .+...+..|...|.. .++.++|...|++..+.|
T Consensus 390 ~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 390 MRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 665543 345555666666665 566666666666666654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-13 Score=140.19 Aligned_cols=163 Identities=12% Similarity=0.049 Sum_probs=108.1
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-N-YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNML 513 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 513 (667)
...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|+.+.|..+|+...+.. |.+...+...
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~ 396 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTA 396 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHH
Confidence 445666677777778888888888888773 454 2 467777777777788888888888877653 2223333222
Q ss_pred HHH-HHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCC--HhHHHHHHHHHhcc
Q 005969 514 IDM-YGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLG-FKPD--RVALIAVLTACRHG 586 (667)
Q Consensus 514 ~~~-~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g-~~p~--~~~~~~li~~~~~~ 586 (667)
... +...|+.++|..+|+...+ | +...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 222 2346777788877776652 3 45677777777777888888888888877753 1222 23666667777777
Q ss_pred CCHHHHHHHHHHhHHh
Q 005969 587 GLVREGMELFERMNRS 602 (667)
Q Consensus 587 g~~~~A~~~~~~~~~~ 602 (667)
|+.+.+..+.+++.+.
T Consensus 477 G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 477 GDLASILKVEKRRFTA 492 (530)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888887777444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-15 Score=149.07 Aligned_cols=256 Identities=11% Similarity=0.018 Sum_probs=164.4
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACS 482 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 482 (667)
..+......+.+.|++++|...|+++. ..+...|..+...+...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 334555555555555555555666554 2345567777777777777777777777777643 334667777777777
Q ss_pred ccCChhhHHHHHHHHHHhCCCCC--------chhHHhHHHHHHHhcCChHHHHHHHHhcC--CC---ChhhHHHHHHHHH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISS--------DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR---NVITWTALISALG 549 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~---~~~~~~~li~~~~ 549 (667)
..|++++|...++.+.+.....+ ....+..+...+...|++++|...++++. .| +...+..+...|.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 77777777777777766531110 01222334667777777888887777766 23 4567777777777
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHH
Q 005969 550 LNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 550 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
..|++++|++.++++.+.. +.+..+|..+..+|...|++++|...++++.+. .+.+..++..+..+|.+.|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 7888888888888877742 334667777777888888888888888877544 2334566777778888888888888
Q ss_pred HHHHhCC-CCC-------------CHHHHHHHHHHHHhcCChhHHhhhhh
Q 005969 630 KIITTMP-FPP-------------NALIWRTFLEGCQRCRIAKYDTLNST 665 (667)
Q Consensus 630 ~~~~~m~-~~p-------------~~~~~~~l~~~~~~~~~~~~a~~~~~ 665 (667)
+.+++.. ..| +..+|..+..++...|+.+.+..+.+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7777762 111 25677778888888888777776554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-15 Score=145.69 Aligned_cols=256 Identities=11% Similarity=0.011 Sum_probs=211.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcC
Q 005969 376 LGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNG 450 (667)
Q Consensus 376 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g 450 (667)
+..+...+.+.|++++|.+.|+.+ ..|.+...+..+..++...|++++|+..|++..+ .+...+..+...|...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 447788999999999999999998 5677788899999999999999999999998763 45678999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh
Q 005969 451 DYKEVLELFKYMRAARIYPDN-----------YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK 519 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (667)
++++|...++++.+. .|+. ..+..+...+...|++++|...++++.+......++.++..+...|..
T Consensus 148 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 148 HQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp CHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 999999999999874 3432 223345778899999999999999999986433368899999999999
Q ss_pred cCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHH
Q 005969 520 CGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 520 ~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
.|++++|...|+++. . .+..+|..+...|...|++++|++.|+++.+. .| +..++..+..+|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999876 3 46779999999999999999999999999985 45 477899999999999999999999
Q ss_pred HHHhHHhhCC----------CCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 596 FERMNRSYGV----------EPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 596 ~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
++++.....- ..+..++..+..++...|+.+.|.++..+-
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9998654211 113678999999999999999999988764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-17 Score=166.87 Aligned_cols=121 Identities=11% Similarity=0.015 Sum_probs=86.4
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC-------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT-------DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAV 579 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 579 (667)
..+|++||++|++.|++++|.++|++|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||.+||++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3467777777777777777777775543 477777777777777777777777777777777777777777777
Q ss_pred HHHHhccCCH-HHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHH
Q 005969 580 LTACRHGGLV-REGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEA 628 (667)
Q Consensus 580 i~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 628 (667)
|.++++.|+. ++|.++|++|.. .|+.||..+|++++....+.+-++..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHH
Confidence 7777777764 667777777743 47777777777777666655433333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-17 Score=167.60 Aligned_cols=147 Identities=9% Similarity=0.058 Sum_probs=127.7
Q ss_pred hhHHhhHHHHhhccCChhHHHHhhccCC-------CCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHH
Q 005969 75 AFVGTALLGLYGRHGCLDEVVSVFEDMP-------RKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGV 147 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 147 (667)
..+|++||.+|++.|++++|.++|++|. .||+++||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4689999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHhcccCch-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCC-----CchhHHHHHHHHHccC
Q 005969 148 IHGLSNEQDL-EFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIR-----DVVSWNTIIGALAESE 221 (667)
Q Consensus 148 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~ 221 (667)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.+++..+..+ .+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999999988887777777776666521 2334445555566554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-15 Score=144.06 Aligned_cols=282 Identities=9% Similarity=-0.055 Sum_probs=198.9
Q ss_pred HHhcCChHHHHH-HHHHHHHCCCC-C--CchhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccC
Q 005969 16 YSRCGYVEDALR-MFLYMINRGFE-P--TQFTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHG 89 (667)
Q Consensus 16 ~~~~~~~~~a~~-~~~~m~~~~~~-p--~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 89 (667)
+.-.|++++|+. .|++..+.... | +...+..+-. ...+++++|...++++++.. +.+...+..+...|.+.|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCc
Confidence 344567777777 77765543111 1 1223333222 34447777777777777665 667788888889999999
Q ss_pred ChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChh-hHHH---------------HHHH
Q 005969 90 CLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTES-SFVG---------------VIHG 150 (667)
Q Consensus 90 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~---------------li~~ 150 (667)
++++|...|++..+ .+..++..+...+...|++++|++.++++.+.. |+.. .+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999987653 466788889999999999999999999988754 3222 2211 2333
Q ss_pred hcccCchHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCChhHHHHhhccCC---CCCchhHHHHHHHHHccCChhHH
Q 005969 151 LSNEQDLEFGEQIHGLVIKNGFDY-ELLVANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSWNTIIGALAESENFGKA 226 (667)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 226 (667)
+...|++++|...++.+.+..... +..++..+...|...|++++|...|++.. ..+...|..+...+...|++++|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 337889999999999988875432 57888889999999999999998888765 23566788888889999999999
Q ss_pred HHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCC----------CchHHHHHHHHHHhcCChHHH
Q 005969 227 LELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALEC----------DVFVGSALVDFYAKCDNLEGA 296 (667)
Q Consensus 227 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a 296 (667)
...|++..... +.+...+..+...+...|++++|...++.+.+..... ...++..+..++...|+.++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99998887642 3346677777888888899999999888887764332 156788888888888888888
Q ss_pred HHHHhc
Q 005969 297 HLCFSE 302 (667)
Q Consensus 297 ~~~~~~ 302 (667)
..++..
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 887763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-13 Score=138.53 Aligned_cols=127 Identities=10% Similarity=-0.005 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA-CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
.|..++..+.+.|++++|..+|++..+.. +.+...+...... +...|+.+.|..+|+...+.. |.++..+..++..
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 45555555566666777777777766532 1122222222111 234678888888888777664 4467778888888
Q ss_pred HHhcCChHHHHHHHHhcCC--C-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 517 YGKCGSIGSSVKIFNEMTD--R-N----VITWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
+.+.|+.++|..+|++... | + ...|...+......|+.+.+..+++++.+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888887652 2 2 236777788788889999999998888774
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-14 Score=139.17 Aligned_cols=262 Identities=9% Similarity=-0.059 Sum_probs=205.6
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHH
Q 005969 4 RNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLG 83 (667)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (667)
.+...|..+...+...|++++|+.+|+++.+. .+.+...+..+..
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~ 63 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQA-----------------------------------APEREEAWRSLGL 63 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------CCCCHHHHHHHHH
Confidence 35567788888889999999999999988875 2445566677778
Q ss_pred HhhccCChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCCh-hhHHHH------------
Q 005969 84 LYGRHGCLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTE-SSFVGV------------ 147 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l------------ 147 (667)
.+.+.|++++|...|++..+ .+...+..+...+...|++++|++.++++.+.. |+. ..+..+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHH
Confidence 88888888888888887653 355678888888888899999999998887753 332 233222
Q ss_pred --HH-HhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---CCCchhHHHHHHHHHccC
Q 005969 148 --IH-GLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSWNTIIGALAESE 221 (667)
Q Consensus 148 --i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~ 221 (667)
.. .+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.+++.. ..+...|..+...+...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 22 3778899999999999998875 3467888999999999999999999998765 235677888899999999
Q ss_pred ChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCC-----------CchHHHHHHHHHHhc
Q 005969 222 NFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALEC-----------DVFVGSALVDFYAKC 290 (667)
Q Consensus 222 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~ 290 (667)
++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+..... +...+..+..++.+.
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 9999999999987652 3356778888888999999999999999988876543 467888899999999
Q ss_pred CChHHHHHHHhccC
Q 005969 291 DNLEGAHLCFSEIS 304 (667)
Q Consensus 291 g~~~~a~~~~~~~~ 304 (667)
|+.++|..++++..
T Consensus 300 g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 300 NRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-14 Score=135.33 Aligned_cols=254 Identities=11% Similarity=0.025 Sum_probs=203.1
Q ss_pred HHHHHhhCCHHHHHHHHHhc-CCCCCc--chhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHH
Q 005969 380 MTSYAKSGLISDALAFVTAL-NIPRAV--VPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVL 456 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~-~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 456 (667)
++.....|++..|+..++.. ...|+. .....+..+|...|+++.|...++....|+..++..+...+...|+.++|+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 34566789999999988876 333332 344667889999999999999888766667778888889999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-
Q 005969 457 ELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT- 534 (667)
Q Consensus 457 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 534 (667)
+.++++...+..|+ ...+..+...+...|++++|.+.++. |.+...+..++..|.+.|++++|.+.|+.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999998776665 45566666889999999999999987 4488899999999999999999999999987
Q ss_pred -CCChhhH---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcc
Q 005969 535 -DRNVITW---TALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMD 610 (667)
Q Consensus 535 -~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (667)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++.... -+-++.
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~ 235 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPE 235 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 4554322 22334445568999999999999987 3557789999999999999999999999998665 355677
Q ss_pred hhHHHHHHHhhcCChHH-HHHHHHhCC-CCCCHHH
Q 005969 611 HYHCVVDLLVRYGHLKE-AEKIITTMP-FPPNALI 643 (667)
Q Consensus 611 ~~~~l~~~~~~~g~~~~-A~~~~~~m~-~~p~~~~ 643 (667)
++..++..+...|+.++ +.++++++. ..|+...
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 89999999999999876 568888773 5555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-14 Score=138.35 Aligned_cols=255 Identities=10% Similarity=-0.017 Sum_probs=181.4
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHc
Q 005969 375 VLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHN 449 (667)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 449 (667)
.+-.+...+...|++++|..+++.+ ..|.+...+..+..++...|++++|...+++..+ .+...+..+...+...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 3446677888899999999988887 4555666777778888888888888888877652 3456677777888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH-HHHHH--------------HH-HHhccCChhhHHHHHHHHHHhCCCCCchhHHhHH
Q 005969 450 GDYKEVLELFKYMRAARIYPDNY-TFVSL--------------LS-ACSKLCNLALGSSLHGLIKKTEIISSDTFVCNML 513 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 513 (667)
|++++|...++++.+.. |+.. .+..+ .. .+...|+++.|...++.+.+.. |.+...+..+
T Consensus 103 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 178 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLHASL 178 (327)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHHHH
Confidence 88888888888887642 3322 22222 22 2667778888888888877764 3367777788
Q ss_pred HHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 514 IDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
...|...|++++|.+.++.+. .| +...+..+...+...|++++|.+.++++.+.. +.+..++..+...|...|+++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 888888888888888887765 23 45677777888888888888888888877742 334667777888888888888
Q ss_pred HHHHHHHHhHHhhCCCC-----------CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 591 EGMELFERMNRSYGVEP-----------EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+|.+.++++..... .. +...+..+..++.+.|+.++|.+++++.
T Consensus 258 ~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888887754411 10 3556777778888888888888777655
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.8e-14 Score=130.71 Aligned_cols=224 Identities=12% Similarity=-0.026 Sum_probs=148.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhH
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQ 359 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (667)
..+.++|...|+++.|...++....|+..++..+...+...++.+ |+..++++...+..|+...+.
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~------------- 104 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL------------- 104 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH-------------
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH-------------
Confidence 445667777778777777766644444455555666666666666 666666666655555443332
Q ss_pred HHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchH
Q 005969 360 LHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSW 439 (667)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 439 (667)
..+...+...|++++|++ .+++ ..+...+
T Consensus 105 -----------------~~la~~~~~~g~~~~Al~--------------------------------~l~~--~~~~~~~ 133 (291)
T 3mkr_A 105 -----------------LMAASIYFYDQNPDAALR--------------------------------TLHQ--GDSLECM 133 (291)
T ss_dssp -----------------HHHHHHHHHTTCHHHHHH--------------------------------HHTT--CCSHHHH
T ss_pred -----------------HHHHHHHHHCCCHHHHHH--------------------------------HHhC--CCCHHHH
Confidence 133344555555555555 6666 3556677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 440 NIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTF---VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 440 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
..++..+.+.|++++|...++++.+.. |+.... ...+..+...|+.++|..+++++.+.. |.++..++.+...
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~ 209 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAAC 209 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 788888888999999999999988753 553211 122333445578888888888888773 5577788888888
Q ss_pred HHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHH-HHHHHHHHHHcCCCCCHh
Q 005969 517 YGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQR-ALEKFREMEFLGFKPDRV 574 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~g~~p~~~ 574 (667)
+.+.|++++|...|++.. .| +..++..++..+...|+.++ +.++++++.+. .|+..
T Consensus 210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 888888888888887765 34 55677777777777777755 56777777773 56533
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=117.44 Aligned_cols=194 Identities=12% Similarity=0.024 Sum_probs=134.0
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. |.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 44556667777777888888888888777642 3355677777777778888888888888777765 44667777777
Q ss_pred HHHHhc-----------CChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 005969 515 DMYGKC-----------GSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVL 580 (667)
Q Consensus 515 ~~~~~~-----------~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li 580 (667)
..+... |++++|...+++.. .| +...+..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 777777 88888888887766 34 45677777888888888888888888888765 6677788888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 581 TACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+|...|++++|...+++..+. .+.+...+..+..++.+.|++++|.+.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888888888887554 3445567777888888888888888877765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-11 Score=123.93 Aligned_cols=193 Identities=10% Similarity=0.029 Sum_probs=106.4
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------------------cCChhhHHHHHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSK-------------------LCNLALGSSLHGL 496 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------------------~~~~~~a~~~~~~ 496 (667)
...+..+...|...|++++|...+++..+.. +-+..++..+...|.. .+..+.|...++.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444555555556666666666666555532 1123333333333221 1234567777777
Q ss_pred HHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCChh----hHHHHHH-HHHhCCChHHHHHHHHHHHHcCC
Q 005969 497 IKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNVI----TWTALIS-ALGLNGFAQRALEKFREMEFLGF 569 (667)
Q Consensus 497 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~----~~~~li~-~~~~~~~~~~A~~~~~~~~~~g~ 569 (667)
..+.. |.+...+..+...|...|++++|...|++.. +++.. .+..+.. .....|+.++|+..|++..+ +
T Consensus 326 a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i 401 (472)
T 4g1t_A 326 ADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--I 401 (472)
T ss_dssp HHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--S
T ss_pred HhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 77664 4466778888889999999999999998765 33332 1222222 23467889999999999888 4
Q ss_pred CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHH
Q 005969 570 KPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP----FPPNALIW 644 (667)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~p~~~~~ 644 (667)
.|+....... ...+.++++..... -+.+..+|..+..++...|++++|.+.|++.- ..|+..+|
T Consensus 402 ~~~~~~~~~~---------~~~l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 402 NQKSREKEKM---------KDKLQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CCCCHHHHHH---------HHHHHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred CcccHHHHHH---------HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 6664432222 23344555555333 35667889999999999999999999998872 44555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-11 Score=123.81 Aligned_cols=372 Identities=12% Similarity=0.003 Sum_probs=198.3
Q ss_pred HHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCh---hHHHHhhccCCCCCchhHHHHHHHHHccC---
Q 005969 148 IHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGI---WSAEKMFKDVEIRDVVSWNTIIGALAESE--- 221 (667)
Q Consensus 148 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~--- 221 (667)
...+.+.|++++|.+++....+.|. ...+..|...|...|+. ++|.+.|++..+.+...+..+...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 3344455666666666666665542 22334444555556666 77777777776556666666666555555
Q ss_pred --ChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhH---HHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC----
Q 005969 222 --NFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSIL---GKSIHAKVIKNALECDVFVGSALVDFYAKCDN---- 292 (667)
Q Consensus 222 --~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 292 (667)
++++|+..|++....|... .+..+-..+...+..+. +.+.+......| +......|...|...+.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 6788998888888765433 34444444444444333 344444444444 45566677777777774
Q ss_pred hHHHHHHHhccCCCCcccHHHHHHHHhcCC---ChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhc
Q 005969 293 LEGAHLCFSEISNKNIVSWNALILGYASKS---SPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMG 368 (667)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 368 (667)
.+.+..+++.....++..+..+-..|...| +.+ |+..|.+..+.|.......+
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~----------------------- 217 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVD----------------------- 217 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHH-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHH-----------------------
Confidence 444555666666666667888888888888 667 88888777766543322112
Q ss_pred CcchhhhHHHHHHHHHhh----CCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHH
Q 005969 369 YENYEYVLGSLMTSYAKS----GLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIA 444 (667)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 444 (667)
.+...|... ++.++|.+.|+.. ...++..+..+..
T Consensus 218 ---------~Lg~~y~~g~~~~~d~~~A~~~~~~a--------------------------------a~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 218 ---------SVARVLGDATLGTPDEKTAQALLEKI--------------------------------APGYPASWVSLAQ 256 (452)
T ss_dssp ---------HHHHHHTCGGGSSCCHHHHHHHHHHH--------------------------------GGGSTHHHHHHHH
T ss_pred ---------HHHHHHhCCCCCCCCHHHHHHHHHHH--------------------------------cCCCHHHHHHHHH
Confidence 233333322 4666666654432 2223333444444
Q ss_pred H-H--HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----ChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 445 A-C--AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC-----NLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 445 ~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
. + ...+++++|..+|++..+.| +...+..+...|. .| +.++|...+++.. .| ++..+..|...
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g----~~~A~~~Lg~~ 327 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR----EVAADYYLGQI 327 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT----CHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC----CHHHHHHHHHH
Confidence 4 2 34667777777777777655 4445555555554 33 6777777777666 32 55666666666
Q ss_pred HHh----cCChHHHHHHHHhcCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 005969 517 YGK----CGSIGSSVKIFNEMTDR-NVITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGG 587 (667)
Q Consensus 517 ~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 587 (667)
|.. ..+.++|...|+...++ +......|...|.. ..+.++|..+|+...+.| .++.......+......+
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~ 406 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPA 406 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHH
Confidence 655 33677777777765543 44555566666553 346777777777777766 233333333333334445
Q ss_pred CHHHHHHHHHHhHHh
Q 005969 588 LVREGMELFERMNRS 602 (667)
Q Consensus 588 ~~~~A~~~~~~~~~~ 602 (667)
+..+|..+.++..+.
T Consensus 407 ~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 407 QRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 666677766665443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-11 Score=113.80 Aligned_cols=237 Identities=10% Similarity=0.024 Sum_probs=178.7
Q ss_pred HHHHHhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccC
Q 005969 411 IAGIYNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD--NYTFVSLLSACSKLC 485 (667)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~ 485 (667)
....+...|++++|+..|++.. ..+...+..+...+...|++++|+..+++..+.+-.|+ ..+|..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 3344445555555555665544 23455788888899999999999999999988432222 334788888999999
Q ss_pred ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHH
Q 005969 486 NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFR 562 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~ 562 (667)
+++.|...++...+.. |.+...+..+...|...|++++|...+++..+ | +...|..+...+...+++++|++.++
T Consensus 89 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 44778999999999999999999999999874 3 45667777734444569999999999
Q ss_pred HHHHcCCCCC-HhHHHHHHHHHhccCC---HHHHHHHHHHhHHhhCCCCCc------chhHHHHHHHhhcCChHHHHHHH
Q 005969 563 EMEFLGFKPD-RVALIAVLTACRHGGL---VREGMELFERMNRSYGVEPEM------DHYHCVVDLLVRYGHLKEAEKII 632 (667)
Q Consensus 563 ~~~~~g~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~ 632 (667)
+..+. .|+ ...+..+...+...|+ +++|...+++..+...-.|+. ..|..+...+.+.|++++|.+.+
T Consensus 167 ~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 167 KVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99985 454 6678888888888888 888999999886654444543 57888999999999999999999
Q ss_pred HhCC-CCC-CHHHHHHHHHHH
Q 005969 633 TTMP-FPP-NALIWRTFLEGC 651 (667)
Q Consensus 633 ~~m~-~~p-~~~~~~~l~~~~ 651 (667)
++.- ..| +...+..+-...
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC---
T ss_pred HHHHhcCccHHHHHHHhhhhh
Confidence 9883 445 455555554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-11 Score=113.17 Aligned_cols=204 Identities=8% Similarity=-0.031 Sum_probs=166.2
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+.. |.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence 4557777888889999999999999988763 4467788888889999999999999999988875 446788888999
Q ss_pred HHHhcCChHHHHHHHHhcCC----C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 516 MYGKCGSIGSSVKIFNEMTD----R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
.|...|++++|.+.++++.+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998765 3 34577788889999999999999999998853 335778888999999999999
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHH
Q 005969 591 EGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWR 645 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~ 645 (667)
+|...++++.+. .+.+...+..+...+.+.|+.++|.+.++++. ..|+...+.
T Consensus 193 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 193 PARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999988443 34556678888889999999999999998883 445544433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-12 Score=116.54 Aligned_cols=217 Identities=12% Similarity=0.023 Sum_probs=175.6
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCCC--CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLER--PDIVSWNIVIAACAHNGDYKEVLELFKYMRAAR--IYPD----NYTFVSL 477 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l 477 (667)
..+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+.. ..|+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3566788888999999999998887542 667788888899999999999999999887643 1122 4778888
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCCh
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR---NVITWTALISALGLNGFA 554 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 554 (667)
...+...|+++.|...++.+.+.. + +. ..+...|++++|...++.+.+. +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~-~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--R-TA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--C-CH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--c-hh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 888999999999999999988864 3 43 4466678889999999887642 445778888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHh
Q 005969 555 QRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITT 634 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (667)
++|+..+++..+.. +.+..++..+...|...|++++|...+++..+. .+.+...+..+..++.+.|++++|.+.+++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999998853 345778889999999999999999999998655 344567888899999999999999999988
Q ss_pred C
Q 005969 635 M 635 (667)
Q Consensus 635 m 635 (667)
.
T Consensus 233 a 233 (258)
T 3uq3_A 233 A 233 (258)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-12 Score=112.51 Aligned_cols=192 Identities=14% Similarity=0.000 Sum_probs=139.1
Q ss_pred CCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005969 403 RAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLS 479 (667)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 479 (667)
++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3444444555555555555555556665543 345667778888888999999999999888753 335667888888
Q ss_pred HHhcc-----------CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHHHH
Q 005969 480 ACSKL-----------CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RNVITWTALIS 546 (667)
Q Consensus 480 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~ 546 (667)
.+... |++++|...+++..+.. |.+...+..+...|...|++++|...|++..+ .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 88888 99999999999998875 54788888999999999999999999987652 56778888999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 547 ALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 547 ~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.|...|++++|+..|++..+. .| +...+..+...+...|++++|+..+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999885 55 5678889999999999999999999876
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-11 Score=119.50 Aligned_cols=266 Identities=9% Similarity=-0.066 Sum_probs=165.4
Q ss_pred CCHHHHHHHHHhc--CCCCCcchhHHHHHH---HhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHH----cCChhH
Q 005969 387 GLISDALAFVTAL--NIPRAVVPANIIAGI---YNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAH----NGDYKE 454 (667)
Q Consensus 387 ~~~~~a~~~~~~~--~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~----~g~~~~ 454 (667)
+++++|.+.|++. ..|.+...+..+..+ +...++.++|++.+++.. ..+...+..+...+.. .|++++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 3466666666655 223333333333332 334455566666666544 2334445555444444 467889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc--------------
Q 005969 455 VLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC-------------- 520 (667)
Q Consensus 455 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 520 (667)
|.+.+++..... +.+..++..+...+...|+.+.|...++++.+.. |.+..++..+...|...
T Consensus 232 a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 232 GEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999988753 4567788889999999999999999999998875 54677777776665432
Q ss_pred -----CChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh--HHHHHHH-HHhccCCH
Q 005969 521 -----GSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV--ALIAVLT-ACRHGGLV 589 (667)
Q Consensus 521 -----~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~--~~~~li~-~~~~~g~~ 589 (667)
+..+.|...++... ..+...+..+...|...|++++|++.|++..+....|... .+..+.. .....|++
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 23566777776655 2356688889999999999999999999998854333221 2333333 23578999
Q ss_pred HHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHhhhhhcC
Q 005969 590 REGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-P-FPPNALIWRTFLEGCQRCRIAKYDTLNSTKC 667 (667)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 667 (667)
++|+..+++..+ +.|+....... ...+.+++++. . .+.+..+|..+...+...|+.+.|....+++
T Consensus 389 ~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 389 DKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998743 45554322222 23333444433 1 3456789999999999999999998887764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=114.61 Aligned_cols=216 Identities=14% Similarity=0.031 Sum_probs=181.6
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--C----C----cchHHH
Q 005969 374 YVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--P----D----IVSWNI 441 (667)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~----~----~~~~~~ 441 (667)
..+..+...+...|++++|...|+.. .. .+...+..+..++...|++++|.+.+++..+ | + ...+..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34567888999999999999999987 33 7788889999999999999999999988763 2 1 467888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
+...+...|++++|...+++..+. .|+.. .+...|++++|...++.+.+.. |.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhc
Confidence 899999999999999999999884 56643 4556688999999999988864 446778889999999999
Q ss_pred ChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHH
Q 005969 522 SIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFER 598 (667)
Q Consensus 522 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (667)
++++|...+++.. ..+...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999876 2457788999999999999999999999998852 33477889999999999999999999998
Q ss_pred hHHh
Q 005969 599 MNRS 602 (667)
Q Consensus 599 ~~~~ 602 (667)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-11 Score=110.88 Aligned_cols=207 Identities=10% Similarity=-0.037 Sum_probs=155.7
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++.|...++.+.+.. |.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 3456667777888888888888888887753 3456677788888888888888888888887764 446777888888
Q ss_pred HHHhc-CChHHHHHHHHhcCC----C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCH
Q 005969 516 MYGKC-GSIGSSVKIFNEMTD----R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLV 589 (667)
Q Consensus 516 ~~~~~-~~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 589 (667)
.+... |++++|...++.+.+ | +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888887764 2 14567778888888888999998888888752 23467788888888888999
Q ss_pred HHHHHHHHHhHHhhCCC-CCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHH
Q 005969 590 REGMELFERMNRSYGVE-PEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTFL 648 (667)
Q Consensus 590 ~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~ 648 (667)
++|...++++.+. .+ .+...+..+...+...|+.++|..+++.+. ..|+......++
T Consensus 164 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999888888554 23 455667777777788888888888888873 456555444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-11 Score=119.83 Aligned_cols=243 Identities=7% Similarity=-0.020 Sum_probs=124.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCCh
Q 005969 12 IISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCL 91 (667)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 91 (667)
+...+.+.|++++|..+|++..+.| ++..+..|...|...|+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-------------------------------------~~~A~~~Lg~~y~~~g~~ 51 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-------------------------------------YSEAQVGLADIQVGTRDP 51 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-------------------------------------CCTGGGTCC---------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-------------------------------------CHHHHHHHHHHHHccCCC
Confidence 4555666677777777777666543 222233444555556666
Q ss_pred ---hHHHHhhccCCCCCchhHHHHHHHHHhCC-----ChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchH---HH
Q 005969 92 ---DEVVSVFEDMPRKSLVTWNSIVSIFGKHG-----FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLE---FG 160 (667)
Q Consensus 92 ---~~a~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~---~a 160 (667)
++|...|++..+.+...+..+...+...+ ++++|++.|++..+.|.. ..+..|...|...+..+ .+
T Consensus 52 ~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a 128 (452)
T 3e4b_A 52 AQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNA 128 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHH
Confidence 88888888877666667777777555554 678899999988886632 25555655555444433 34
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCh----hHHHHhhccCCCCCchhHHHHHHHHHccC---ChhHHHHHHHHh
Q 005969 161 EQIHGLVIKNGFDYELLVANSLVNMYFQCAGI----WSAEKMFKDVEIRDVVSWNTIIGALAESE---NFGKALELYLRM 233 (667)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m 233 (667)
.+.+....+.| +...+..|...|...+.+ +.+..+++.....+...+..+...|...| +.++|++.|++.
T Consensus 129 ~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 129 QQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 44444444444 345666677777777744 44455555555566667777777887788 788888888887
Q ss_pred HhCCcCCChhhHHHHHHHhhcc----CChhHHHHHHHHHHHhcCCCCchHHHHHHHH-H--HhcCChHHHHHHHhc
Q 005969 234 SVDIVFPNQTTFVYVINSCAGL----QNSILGKSIHAKVIKNALECDVFVGSALVDF-Y--AKCDNLEGAHLCFSE 302 (667)
Q Consensus 234 ~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~ 302 (667)
.+.|. ++...+..+-..+... ++.++|...|+... .| +...+..|... + ...++.++|.+.|++
T Consensus 206 a~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 206 VSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 77653 2333222233333222 45666666666654 22 33344444443 2 234455555444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=121.71 Aligned_cols=239 Identities=9% Similarity=-0.093 Sum_probs=167.5
Q ss_pred HhhcCChhHHHHHHhcCCCC-------CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 005969 415 YNRTGQYNETVKLLSQLERP-------DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNL 487 (667)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 487 (667)
+...|++++|+..++++.+. +...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34456666666676665531 34567777888888888888888888888753 34577888888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 488 ALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNVITWTALISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 488 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 565 (667)
+.|...++.+.+.. |.+...+..+...|...|++++|...++.+. .|+.......+..+...|++++|...+++..
T Consensus 94 ~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888888888874 4467788888888888888888888888876 4555544455555566788888888888777
Q ss_pred HcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-----cchhHHHHHHHhhcCChHHHHHHHHhC-CCCC
Q 005969 566 FLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-----MDHYHCVVDLLVRYGHLKEAEKIITTM-PFPP 639 (667)
Q Consensus 566 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p 639 (667)
... +++...+ .++..+...++.++|...+++.... .|+ ...+..+..++.+.|++++|.+.+++. ...|
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 652 3343333 4667777788888888888776322 221 467788888888888999998888887 3455
Q ss_pred CHHHHHHHHHHHHhcCChhHHhhh
Q 005969 640 NALIWRTFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 640 ~~~~~~~l~~~~~~~~~~~~a~~~ 663 (667)
+. +.....++...|+.+.|...
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC---
T ss_pred hh--HHHHHHHHHHHHHHHhhHHH
Confidence 32 22334455566676666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=113.19 Aligned_cols=196 Identities=13% Similarity=0.067 Sum_probs=127.2
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHH
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNML 513 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 513 (667)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+.+.|...++.+.+.. |.+...+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHH
Confidence 344556666667777777777777777777642 3356677777777777788888888877777664 3356777777
Q ss_pred HHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 514 IDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
...|...|++++|.+.++++. ..+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 777888888888888777665 2355667777777888888888888888877752 335667777777888888888
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 591 EGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+|...++++... .+.+..++..+..++.+.|++++|.+.+++.
T Consensus 177 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 177 EALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888877544 3344567777888888888888888888776
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-11 Score=109.34 Aligned_cols=191 Identities=8% Similarity=-0.084 Sum_probs=146.5
Q ss_pred HHHHHHhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 005969 410 IIAGIYNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCN 486 (667)
Q Consensus 410 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 486 (667)
.+...+...|++++|.+.|++.. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhH
Confidence 34444444555555555555543 2355677778888888999999999998888753 3466788888888889999
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHH
Q 005969 487 LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFRE 563 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~ 563 (667)
+++|.+.++.+.+.+..|.+...+..+...+...|++++|...++++. .| +...+..+...+...|++++|...+++
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998887733334467788888889999999999999998776 23 567888888999999999999999999
Q ss_pred HHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 564 MEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 564 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 201 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 201 FAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88752 345667888888899999999999999988544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-11 Score=112.64 Aligned_cols=238 Identities=9% Similarity=-0.084 Sum_probs=187.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CCcc----hHHHHHHHHH
Q 005969 376 LGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PDIV----SWNIVIAACA 447 (667)
Q Consensus 376 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~li~~~~ 447 (667)
+-.....+...|++++|...++.. ..|.+...+..+..++...|++++|.+.+++..+ ++.. .|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 346677889999999999999998 5666677889999999999999999999988764 3333 3788999999
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
..|++++|...+++..+.. +.+..++..+...+...|+++.|...+++..+.. |.+...+..+...+...+++++|.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998853 3456789999999999999999999999988773 547778888883444456999999
Q ss_pred HHHHhcC--CC-ChhhHHHHHHHHHhCCC---hHHHHHHHHHHHHcC-CCCCH------hHHHHHHHHHhccCCHHHHHH
Q 005969 528 KIFNEMT--DR-NVITWTALISALGLNGF---AQRALEKFREMEFLG-FKPDR------VALIAVLTACRHGGLVREGME 594 (667)
Q Consensus 528 ~~~~~~~--~~-~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~g-~~p~~------~~~~~li~~~~~~g~~~~A~~ 594 (667)
+.|+.+. .| +...+..+...+...|+ .++|...+++..+.. -.|+. .+|..+...|...|++++|.+
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999887 34 45677778888888888 888999999987741 12432 478889999999999999999
Q ss_pred HHHHhHHhhCCCCCcchhHHHHHH
Q 005969 595 LFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
.+++..+. .+-+......+...
T Consensus 243 ~~~~al~~--~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 243 AWKNILAL--DPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHH--CTTCHHHHHHHC--
T ss_pred HHHHHHhc--CccHHHHHHHhhhh
Confidence 99999654 23333444444333
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-11 Score=107.64 Aligned_cols=168 Identities=9% Similarity=-0.072 Sum_probs=134.0
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCCchhHHhH
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKL-CNLALGSSLHGLIKKTEIISSDTFVCNM 512 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 512 (667)
.+...+..+...+...|++++|...++++.+.. +.+..++..+...+... |+++.|...++.+.+.+..|.+...+..
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 118 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN 118 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence 345677778888888899999999998887753 44667888888888899 9999999999988873333435678888
Q ss_pred HHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCH
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLV 589 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 589 (667)
+...+...|++++|...++++. .| +...+..+...+...|++++|.+.++++.+.....+...+..+...+...|+.
T Consensus 119 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 8899999999999999998776 23 56788888899999999999999999988853114566777788888899999
Q ss_pred HHHHHHHHHhHHh
Q 005969 590 REGMELFERMNRS 602 (667)
Q Consensus 590 ~~A~~~~~~~~~~ 602 (667)
+.|..+++.+...
T Consensus 199 ~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 199 QAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-11 Score=111.89 Aligned_cols=190 Identities=8% Similarity=0.036 Sum_probs=141.4
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC 485 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 485 (667)
..+...+...|++++|...|++..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhc
Confidence 3344444445555555555555432 345667777888888999999999999888753 346778888888889999
Q ss_pred ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHH
Q 005969 486 NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFR 562 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~ 562 (667)
+++.|...++.+.+.. |.+...+..+...+...|++++|...++++. ..+...+..+...+...|++++|++.++
T Consensus 106 ~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp CHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999888875 4467788888899999999999999998876 2356788888899999999999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 563 EMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 563 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 184 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 184 AVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 988852 335778888999999999999999999988554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-10 Score=106.54 Aligned_cols=216 Identities=11% Similarity=-0.023 Sum_probs=115.3
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHH----cC
Q 005969 375 VLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAH----NG 450 (667)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~g 450 (667)
.+..+...+...|++++|.+.|+....+.+. ..+..+...|.. .+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-------------------------------~a~~~lg~~~~~g~~~~~ 56 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKEN-------------------------------SGCFNLGVLYYQGQGVEK 56 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCH-------------------------------HHHHHHHHHHHcCCCcCC
Confidence 3345666667777777777766654222233 344444455555 55
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh----cCC
Q 005969 451 DYKEVLELFKYMRAARIYPDNYTFVSLLSACSK----LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK----CGS 522 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 522 (667)
++++|...|++..+.+ +...+..+...|.. .++.++|...+++..+.+ ++..+..+...|.. .++
T Consensus 57 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~ 129 (273)
T 1ouv_A 57 NLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRD 129 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccC
Confidence 5555555555555543 44445555555555 555555555555555543 44455555555555 555
Q ss_pred hHHHHHHHHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCCHHHHH
Q 005969 523 IGSSVKIFNEMTD-RNVITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH----GGLVREGM 593 (667)
Q Consensus 523 ~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 593 (667)
+++|...|+...+ .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|.
T Consensus 130 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 130 FKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 5555555555442 233444455555554 555666666666555542 33445555555555 55666666
Q ss_pred HHHHHhHHhhCCCCCcchhHHHHHHHhh----cCChHHHHHHHHhC
Q 005969 594 ELFERMNRSYGVEPEMDHYHCVVDLLVR----YGHLKEAEKIITTM 635 (667)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m 635 (667)
..+++..+. + +...+..+..+|.+ .+++++|.+.+++.
T Consensus 207 ~~~~~a~~~-~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 207 ARYSKACEL-E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHHHHHHT-T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHHHHHhC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 666555332 1 13445555555555 55566666555554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-10 Score=106.96 Aligned_cols=218 Identities=12% Similarity=0.012 Sum_probs=184.5
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHhCCCCCchhHH
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSK----LCNLALGSSLHGLIKKTEIISSDTFVC 510 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 510 (667)
+...+..+...+...|++++|...|++..+. -+...+..+...+.. .++.++|...+++..+.+ ++..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 4456777788889999999999999999883 355677788888888 999999999999999886 67888
Q ss_pred hHHHHHHHh----cCChHHHHHHHHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 005969 511 NMLIDMYGK----CGSIGSSVKIFNEMTD-RNVITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVALIAVLT 581 (667)
Q Consensus 511 ~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 581 (667)
..+...|.. .+++++|...|+...+ .+...+..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 899999999 9999999999998774 467788889999999 999999999999999965 5667788888
Q ss_pred HHhc----cCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005969 582 ACRH----GGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVR----YGHLKEAEKIITTMPFPPNALIWRTFLEGCQR 653 (667)
Q Consensus 582 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 653 (667)
.|.. .+++++|..++++..+. + +...+..+..+|.. .+++++|.+.+++.....+...+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 8887 99999999999998544 3 45778889999999 99999999999987422347788888888888
Q ss_pred ----cCChhHHhhhhhc
Q 005969 654 ----CRIAKYDTLNSTK 666 (667)
Q Consensus 654 ----~~~~~~a~~~~~~ 666 (667)
.++.+.|....++
T Consensus 231 g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKK 247 (273)
T ss_dssp TSSSSCCSTTHHHHHHH
T ss_pred CCCcccCHHHHHHHHHH
Confidence 8899998876654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-10 Score=111.70 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=172.9
Q ss_pred HHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 005969 411 IAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGD-YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCN 486 (667)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 486 (667)
+..++...|++++|++.+++..+ .+...|+.+...+...|+ +++|+..|++..+.. +-+...|..+..++...|+
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccC
Confidence 33344444444444445555442 345667777888888886 889999988888753 3356788888888888899
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHh-CCChHHH-----
Q 005969 487 LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGL-NGFAQRA----- 557 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~-~~~~~~A----- 557 (667)
+++|...++++.+.. |.+...|..+..++...|++++|+..++++. .| +...|+.+..++.. .|..++|
T Consensus 182 ~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 182 PSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp CTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 999999999888875 5578888888888889999999999988877 34 56788888888888 5665777
Q ss_pred HHHHHHHHHcCCCCC-HhHHHHHHHHHhccC--CHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcC---------Ch
Q 005969 558 LEKFREMEFLGFKPD-RVALIAVLTACRHGG--LVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYG---------HL 625 (667)
Q Consensus 558 ~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~ 625 (667)
++.+++.+.. .|+ ...|..+...+...| ++++|.+.+.++ + ..+.+...+..++.+|.+.| ..
T Consensus 260 l~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 260 VQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 5888888884 564 668888888888888 688999888877 2 23455677888888888864 25
Q ss_pred HHHHHHHHhC--CCCCC-HHHHHHHHHHHHh
Q 005969 626 KEAEKIITTM--PFPPN-ALIWRTFLEGCQR 653 (667)
Q Consensus 626 ~~A~~~~~~m--~~~p~-~~~~~~l~~~~~~ 653 (667)
++|.++++++ ...|. ...|..+...+..
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 8899999998 46665 4566666555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-10 Score=111.68 Aligned_cols=239 Identities=10% Similarity=0.039 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCC-hhHHHHHHhcCCC---CCcchHHHHHHHHH
Q 005969 374 YVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQ-YNETVKLLSQLER---PDIVSWNIVIAACA 447 (667)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li~~~~ 447 (667)
..+..+...+.+.|++++|++.++.. ..|.+...+..+..++...|+ +++|+..|++..+ .+...|..+...+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34556778888999999999999998 667778888999999999997 9999999998874 45678899999999
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh-cCChHHH
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK-CGSIGSS 526 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A 526 (667)
..|++++|+..|+++.+.. +-+...|..+..++.+.|++++|...++++.+.. |.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999854 3467789999999999999999999999999986 5578999999999999 6665777
Q ss_pred -----HHHHHhcC--CC-ChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccC--------
Q 005969 527 -----VKIFNEMT--DR-NVITWTALISALGLNG--FAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGG-------- 587 (667)
Q Consensus 527 -----~~~~~~~~--~~-~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g-------- 587 (667)
+..+++.. .| +...|..+...+...| +.++|++.++++ + ..| +...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 47777665 44 5678999999999888 689999999988 3 345 4678889999998864
Q ss_pred -CHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHh
Q 005969 588 -LVREGMELFERMNRSYGVEPEM-DHYHCVVDLLV 620 (667)
Q Consensus 588 -~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 620 (667)
.+++|.++++++ .. .+.|.. ..|..+...+.
T Consensus 332 ~~~~~A~~~~~~l-~~-~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEIL-AK-EKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHH-HH-TTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HH-HhCchhHHHHHHHHHHHH
Confidence 358999999988 22 234443 44555555554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=122.64 Aligned_cols=259 Identities=11% Similarity=0.006 Sum_probs=192.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhc-CCCC-Cc----chhHHHHHHHhhcCChhHHHHHHhcCCC---------CCcchHHH
Q 005969 377 GSLMTSYAKSGLISDALAFVTAL-NIPR-AV----VPANIIAGIYNRTGQYNETVKLLSQLER---------PDIVSWNI 441 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~ 441 (667)
..+...+...|++++|...|+.. ...| +. ..+..+..++...|++++|...+++..+ .....+..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 35667888999999999999887 2222 22 3577788888999999999988877652 22356777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCC-----------------hhhHHHHHHHHHH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAA----RIYP-DNYTFVSLLSACSKLCN-----------------LALGSSLHGLIKK 499 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~ 499 (667)
+...|...|++++|...+++..+. +-.| ...++..+...+...|+ ++.|...+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 888889999999999999887653 1112 23467778888888999 8888888877654
Q ss_pred h----CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 500 T----EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 500 ~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
. +..+.....+..+...|...|++++|...+++..+ ++ ...+..+...|...|++++|.+.+++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3 21222345778888999999999999999988763 22 23778888999999999999999988776
Q ss_pred cCCC-C----CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 567 LGFK-P----DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE----MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 567 ~g~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.... . ...++..+...|...|++++|...+++......-.++ ..++..+..++.+.|++++|.+.+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3110 1 1457788888999999999999999987543111111 346788899999999999999998876
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-10 Score=108.17 Aligned_cols=212 Identities=10% Similarity=-0.065 Sum_probs=174.1
Q ss_pred HcCChhHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChH
Q 005969 448 HNGDYKEVLELFKYMRAARIY--P-DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIG 524 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 524 (667)
..|++++|+..++++.+.... | +..++..+...+...|+++.|...++.+.+.. |.+...+..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 357899999999999886421 1 35678888999999999999999999999885 547889999999999999999
Q ss_pred HHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 525 SSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 525 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
+|...|+++.+ | +...+..+...|...|++++|.+.++++.+. .|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998873 4 6778999999999999999999999999985 56655555556666778999999999988855
Q ss_pred hhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 602 SYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPN-----ALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
. .+++...+ .++..+...++.++|.+.+.+.- ..|+ ..+|..+...+...|+.+.|...+++
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 34444444 47777788888999999998873 3332 57888999999999999999887664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-11 Score=117.69 Aligned_cols=258 Identities=10% Similarity=-0.021 Sum_probs=174.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc-CCCC-C----cchhHHHHHHHhhcCChhHHHHHHhcCCC---------CCcchHHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTAL-NIPR-A----VVPANIIAGIYNRTGQYNETVKLLSQLER---------PDIVSWNIV 442 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~-~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l 442 (667)
.....+...|++++|...+++. ...| + ...+..+...+...|++++|.+.+++..+ .....+..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 5567788899999999999887 2222 2 24566777788888888888888776542 123456677
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCC--------------------hhhHHHHHHHH
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARI-YPD----NYTFVSLLSACSKLCN--------------------LALGSSLHGLI 497 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~ 497 (667)
...+...|++++|...+++..+... .++ ..++..+...+...|+ ++.|...++..
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7778888888888888887654310 112 2366677777777888 78887777765
Q ss_pred HHh----CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHH
Q 005969 498 KKT----EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTALISALGLNGFAQRALEKFREM 564 (667)
Q Consensus 498 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~~ 564 (667)
.+. +..+.....+..+...+...|++++|...+++..+ ++ ..++..+...+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 433 21121344677777888888888888888877652 12 236677777888888888888888877
Q ss_pred HHcCC-CCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 565 EFLGF-KPD----RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE----MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 565 ~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+... .++ ..++..+...+...|++++|...+++......-..+ ..++..+..++.+.|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 65210 111 446677777888888888888888876443111111 345677788888888888888887765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-11 Score=118.66 Aligned_cols=284 Identities=8% Similarity=-0.052 Sum_probs=212.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHhc-C-CCCC----cchhHHHHHHHhhcCChhHHHHHHhcCCC---------CCcchH
Q 005969 375 VLGSLMTSYAKSGLISDALAFVTAL-N-IPRA----VVPANIIAGIYNRTGQYNETVKLLSQLER---------PDIVSW 439 (667)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~ 439 (667)
.+......+...|++++|...|+.. . .|.+ ...+..+...+...|++++|...+++... .....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3446677889999999999999987 2 2223 24577788899999999999998887542 123467
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCC--------------------hhhHHHHH
Q 005969 440 NIVIAACAHNGDYKEVLELFKYMRAARI-YPD----NYTFVSLLSACSKLCN--------------------LALGSSLH 494 (667)
Q Consensus 440 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~ 494 (667)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ ++.|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 7788889999999999999998765310 012 3477788888999999 99999988
Q ss_pred HHHHHh----CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHH
Q 005969 495 GLIKKT----EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTALISALGLNGFAQRALEKF 561 (667)
Q Consensus 495 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~ 561 (667)
+...+. +..+....++..+...|...|++++|...+++..+ ++ ..++..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876553 21222345788889999999999999999988762 22 237888899999999999999999
Q ss_pred HHHHHc----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHHhhcCChHHHHHHH
Q 005969 562 REMEFL----GFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE----MDHYHCVVDLLVRYGHLKEAEKII 632 (667)
Q Consensus 562 ~~~~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 632 (667)
++..+. +-.+. ..++..+...|...|++++|...+++......-.++ ..++..+..++.+.|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998753 11111 457888999999999999999999987544222222 457888999999999999999998
Q ss_pred HhCC-----C--C-CCHHHHHHHHHHHHhcCChh
Q 005969 633 TTMP-----F--P-PNALIWRTFLEGCQRCRIAK 658 (667)
Q Consensus 633 ~~m~-----~--~-p~~~~~~~l~~~~~~~~~~~ 658 (667)
++.. . . ....++..+...+...|+..
T Consensus 331 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 8762 1 1 22456666777777777653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-11 Score=120.34 Aligned_cols=259 Identities=12% Similarity=-0.018 Sum_probs=199.1
Q ss_pred hHHHHHHHhhcCChhHHHHHHhcCCC--CCc-----chHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHH
Q 005969 408 ANIIAGIYNRTGQYNETVKLLSQLER--PDI-----VSWNIVIAACAHNGDYKEVLELFKYMRAA----RIYP-DNYTFV 475 (667)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~ 475 (667)
+..+...+...|++++|...|++..+ |+. ..+..+...|...|++++|...+++..+. +-.| ...++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34566788899999999999998763 332 36788888999999999999999987653 1122 345778
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHh----CCCCCchhHHhHHHHHHHhcCC-----------------hHHHHHHHHhcC
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKT----EIISSDTFVCNMLIDMYGKCGS-----------------IGSSVKIFNEMT 534 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~ 534 (667)
.+...+...|+++.|...++++.+. +..+....++..+...|...|+ +++|.+.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 8888899999999999999887665 2122245688889999999999 999998888765
Q ss_pred C-----C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 535 D-----R----NVITWTALISALGLNGFAQRALEKFREMEFLGFK-PD----RVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 535 ~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
+ + ....+..+...|...|++++|++.+++..+..-. ++ ..++..+...|...|++++|...+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2 1 2347788889999999999999999998763110 12 2378889999999999999999999875
Q ss_pred HhhCCCC----CcchhHHHHHHHhhcCChHHHHHHHHhCC-C------C-CCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 601 RSYGVEP----EMDHYHCVVDLLVRYGHLKEAEKIITTMP-F------P-PNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 601 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~------~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
....-.. ...++..+..++...|++++|.+.+++.. . . ....++..+...+...|+.+.|...+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4421111 14678889999999999999999998872 1 1 1245778888899999999999877664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-08 Score=102.74 Aligned_cols=462 Identities=11% Similarity=0.032 Sum_probs=234.0
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCC---hHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGF---VEDCMF 127 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~---~~~a~~ 127 (667)
........+++.+..+ +.|...|..++..+.+.+.++.+..+|+.+.. | ....|..-+..-.+.|+ ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555677777777 78999999999999999999999999998864 4 44567777887788888 999999
Q ss_pred HHHHHHHCC-CcCChhhHHHHHHHhcccCc--------hHHHHHHHHHHHH-hcC-CCc-hHHHHHHHHHHHh-------
Q 005969 128 LFCELVRSE-VALTESSFVGVIHGLSNEQD--------LEFGEQIHGLVIK-NGF-DYE-LLVANSLVNMYFQ------- 188 (667)
Q Consensus 128 ~~~~m~~~~-~~~~~~~~~~li~~~~~~~~--------~~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~------- 188 (667)
+|++..... ..|+...|..-+.-..+.++ .+.+.++|+.... .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999988754 23777776666554433332 2445577777655 355 443 4567666654332
Q ss_pred --cCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHH
Q 005969 189 --CAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHA 266 (667)
Q Consensus 189 --~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 266 (667)
.++++.+.++|++...-....+..+ ..-|...... + +..+-..++.- ...+++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~-------------w~~Y~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESM-------------WQRYTQWEQD-V--NQLTARRHIGE--LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHH-------------HHHHHHHHHH-H--CTTTHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHH-------------HHHHHHHHHh-c--CcchHHHHHHH--hhHHHHHHHHHHH
Confidence 3345566666666543111111111 1111111100 0 00000000000 0012222333333
Q ss_pred HHHHhc--CC---CCc-hHHHHHHHHHHhcC-ChHHHHHHHhccCCCCcccHHHHHHHHhcCCC-------hH-HHHHHH
Q 005969 267 KVIKNA--LE---CDV-FVGSALVDFYAKCD-NLEGAHLCFSEISNKNIVSWNALILGYASKSS-------PT-SIFLLI 331 (667)
Q Consensus 267 ~~~~~~--~~---~~~-~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~-a~~~~~ 331 (667)
++.... +. |.. .... ....-..+ ...... ..|...+.---..+. .+ ...+++
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql-----------~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye 333 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQL-----------LIWLEWIRWESDNKLELSDDLHKARMTYVYM 333 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHH-----------HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhccccccccch--hccCCCCchhHHHHH-----------HHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 222211 00 000 0000 00000000 000000 111111111000000 00 111222
Q ss_pred HHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHH-HHHHhc--CCCCCcchh
Q 005969 332 ELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDAL-AFVTAL--NIPRAVVPA 408 (667)
Q Consensus 332 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~--~~~~~~~~~ 408 (667)
+..... ...+.+|-.....+...|+.++|. ++|++. ..|.+...+
T Consensus 334 ~aL~~~--------------------------------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 334 QAAQHV--------------------------------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHT--------------------------------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHc--------------------------------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 222110 111222223333444445555553 555444 233333333
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCC-------------CC------------cchHHHHHHHHHHcCChhHHHHHHHHHH
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLER-------------PD------------IVSWNIVIAACAHNGDYKEVLELFKYMR 463 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 463 (667)
...+....+.|++++|.++|+++.. |+ ...|-..+....+.|+.+.|..+|.+..
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444445555555555544431 21 2246666666667788888888888887
Q ss_pred Hc-CCCCCHHHHHHHHHHHhc-cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C---
Q 005969 464 AA-RIYPDNYTFVSLLSACSK-LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R--- 536 (667)
Q Consensus 464 ~~-g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--- 536 (667)
+. + .+....|...+..-.+ .++.+.|..+|+...+. .|.++..+...++.....|+.+.|..+|+.... |
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 65 2 1122233222222222 34578888888887776 243566666777777778888888888887764 2
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 537 -NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 537 -~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
....|...+..-.+.|+.+.+.++.+++.+. .|+......+++-|.-
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcC
Confidence 2246777777777788888888888888875 5665555556655543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.3e-11 Score=117.65 Aligned_cols=261 Identities=11% Similarity=-0.027 Sum_probs=199.3
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCCC--CC-----cchHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHH
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLER--PD-----IVSWNIVIAACAHNGDYKEVLELFKYMRAA----RIYPD-NYT 473 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~ 473 (667)
..+......+...|++++|...|++..+ |+ ...+..+...+...|++++|...+++..+. +-.|. ..+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3445677788999999999999998763 33 246778888999999999999999986543 22222 456
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhHHhHHHHHHHhcCC--------------------hHHHHHH
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSD----TFVCNMLIDMYGKCGS--------------------IGSSVKI 529 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 529 (667)
+..+...+...|+++.|...++...+.....++ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 778888899999999999999887765211112 4578888999999999 9999988
Q ss_pred HHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhccCCHHHHHHH
Q 005969 530 FNEMTD-----RN----VITWTALISALGLNGFAQRALEKFREMEFLGF-KPD----RVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 530 ~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
++...+ ++ ..++..+...|...|++++|+..+++..+..- .++ ..++..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 886652 12 34778888999999999999999999876310 122 23788899999999999999999
Q ss_pred HHHhHHhhCCCCC----cchhHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHhhh
Q 005969 596 FERMNRSYGVEPE----MDHYHCVVDLLVRYGHLKEAEKIITTMP----FPPN----ALIWRTFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 596 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~ 663 (667)
+++......-.++ ..++..+...+...|++++|.+.+++.. ..++ ..++..+...+...|+.+.|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987543211112 4578889999999999999999998772 1122 56778888899999999999877
Q ss_pred hhc
Q 005969 664 STK 666 (667)
Q Consensus 664 ~~~ 666 (667)
+++
T Consensus 330 ~~~ 332 (406)
T 3sf4_A 330 AEK 332 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.22 E-value=8e-10 Score=96.12 Aligned_cols=160 Identities=12% Similarity=0.057 Sum_probs=90.2
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
++..|..+...|...|++++|+..|++..+.. +-+..++..+...+.+.|+++.|...+....... |.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 34456666666666666666666666666542 2244555666666666666666666666665553 22445555555
Q ss_pred HHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~ 590 (667)
..+...++++.|...+.... . .+...+..+...|...|++++|++.|++..+. .| +..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHH
Confidence 55555566666655555444 1 23445555555555556666666666555553 23 3445555555555556666
Q ss_pred HHHHHHHHh
Q 005969 591 EGMELFERM 599 (667)
Q Consensus 591 ~A~~~~~~~ 599 (667)
+|.+.|++.
T Consensus 159 ~A~~~~~~a 167 (184)
T 3vtx_A 159 EAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555555
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.21 E-value=8.6e-08 Score=99.59 Aligned_cols=214 Identities=11% Similarity=-0.025 Sum_probs=124.8
Q ss_pred CcchHHHHHHHHHHcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhC---------CCC
Q 005969 435 DIVSWNIVIAACAHNGDYKEVL-ELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTE---------IIS 504 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~ 504 (667)
....|-..+..+...|+.++|. .+|++.... ++.+...+...+...-+.|+++.|..+++.+.+.. ..|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4445555566666677777775 777777653 33444455556666667777777777777766531 011
Q ss_pred C-----------chhHHhHHHHHHHhcCChHHHHHHHHhcCCC-C---hhhHHHHHHHHHhC-CChHHHHHHHHHHHHcC
Q 005969 505 S-----------DTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR-N---VITWTALISALGLN-GFAQRALEKFREMEFLG 568 (667)
Q Consensus 505 ~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~g 568 (667)
. ...+|...+....+.|..+.|..+|....+. . ...|-..+..-.+. ++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 1 1235666666666677777777777766532 1 22222222222222 3477777777777765
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC---CcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 005969 569 FKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEP---EMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIW 644 (667)
Q Consensus 569 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~ 644 (667)
++-+...+...+......|+.+.|..+|++.... .++ ....|..++..-.+.|+.+.+.++.+++. ..|+....
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~--~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK--ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT--SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 3334445556666666677777777777776433 111 23456666666667777777777777773 34554444
Q ss_pred HHHHHHHH
Q 005969 645 RTFLEGCQ 652 (667)
Q Consensus 645 ~~l~~~~~ 652 (667)
..+..-|.
T Consensus 578 ~~f~~ry~ 585 (679)
T 4e6h_A 578 EEFTNKYK 585 (679)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 44444443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-10 Score=111.08 Aligned_cols=225 Identities=7% Similarity=-0.033 Sum_probs=173.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-----CchhHHh
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAA----RIYP-DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIIS-----SDTFVCN 511 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 511 (667)
....+...|++++|...+++..+. +-.+ ...++..+...+...|+.+.|...+++..+..... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445667899999999999998764 1112 23578888889999999999999999887652211 1245788
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHhHHH
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMTD-----RNV----ITWTALISALGLNGFAQRALEKFREMEFL----GFKP-DRVALI 577 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p-~~~~~~ 577 (667)
.+...|...|++++|...+++..+ ++. .++..+...|...|++++|++.+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999987762 222 37888999999999999999999998772 3324 356889
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhh---CCCCCcchhHHHHHHHhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 005969 578 AVLTACRHGGLVREGMELFERMNRSY---GVEPEMDHYHCVVDLLVRYGH---LKEAEKIITTMPFPPN-ALIWRTFLEG 650 (667)
Q Consensus 578 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~l~~~ 650 (667)
.+...|.+.|++++|...+++..... +-+.....+..+...+...|+ .++|.+++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999875432 222222335678888888998 8999999999975544 4566778888
Q ss_pred HHhcCChhHHhhhhhc
Q 005969 651 CQRCRIAKYDTLNSTK 666 (667)
Q Consensus 651 ~~~~~~~~~a~~~~~~ 666 (667)
+...|+.+.|....++
T Consensus 349 y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 349 YHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 9999999999876654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-09 Score=93.74 Aligned_cols=167 Identities=12% Similarity=0.023 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHH
Q 005969 470 DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALIS 546 (667)
Q Consensus 470 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~ 546 (667)
+...|..+...+.+.|++++|...|++..+.. |.++..+..+...|.+.|++++|...++... . .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 56678888888888999999999999888875 5578888888889999999999988888776 2 35567777778
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChH
Q 005969 547 ALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLK 626 (667)
Q Consensus 547 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 626 (667)
.+...++++.|.+.+++..+.. +.+...+..+...|.+.|++++|.+.+++..+. -+.+...+..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHH
Confidence 8888889999999998888752 334667888888888999999999999888554 3445677888889999999999
Q ss_pred HHHHHHHhC-CCCCCH
Q 005969 627 EAEKIITTM-PFPPNA 641 (667)
Q Consensus 627 ~A~~~~~~m-~~~p~~ 641 (667)
+|.+.|++. ...|+.
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 999988876 345544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=112.83 Aligned_cols=258 Identities=11% Similarity=-0.017 Sum_probs=196.4
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCC--CC-----cchHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHH
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLER--PD-----IVSWNIVIAACAHNGDYKEVLELFKYMRAA----RIYP-DNYTFVS 476 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ 476 (667)
......+...|++++|...|++..+ |+ ...+..+...+...|++++|...+++..+. +..| ...++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3456678899999999999998763 33 256778888999999999999999986543 2222 2457778
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhHHhHHHHHHHhcCC--------------------hHHHHHHHHh
Q 005969 477 LLSACSKLCNLALGSSLHGLIKKTEIISSD----TFVCNMLIDMYGKCGS--------------------IGSSVKIFNE 532 (667)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 532 (667)
+...+...|+++.|...+++..+.....++ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 888899999999999999987664221112 4478888899999999 9999988877
Q ss_pred cCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhccCCHHHHHHHHHH
Q 005969 533 MTD-----RN----VITWTALISALGLNGFAQRALEKFREMEFLGF-KPD----RVALIAVLTACRHGGLVREGMELFER 598 (667)
Q Consensus 533 ~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (667)
..+ ++ ...+..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 642 12 34677888999999999999999999875310 111 23788889999999999999999998
Q ss_pred hHHhhCCCCC----cchhHHHHHHHhhcCChHHHHHHHHhCC-C---CC----CHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 599 MNRSYGVEPE----MDHYHCVVDLLVRYGHLKEAEKIITTMP-F---PP----NALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 599 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
......-.++ ..++..+...+...|++++|.+.+++.. . .+ ...++..+...+...|+.+.|....++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7543211122 4567889999999999999999998772 1 11 245778888999999999999887764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.1e-10 Score=111.33 Aligned_cols=209 Identities=12% Similarity=0.000 Sum_probs=155.3
Q ss_pred ChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 005969 420 QYNETVKLLSQLER---PDIVSWNIVIAACAHNGDY-KEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHG 495 (667)
Q Consensus 420 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 495 (667)
+++++...++.... .+...+..+...+...|++ ++|+..|++..+.. +-+...+..+...|...|++++|.+.++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666655432 3456677777778888888 88888888887753 3346778888888888888888888888
Q ss_pred HHHHhCCCCCchhHHhHHHHHHHhc---------CChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhC--------CChH
Q 005969 496 LIKKTEIISSDTFVCNMLIDMYGKC---------GSIGSSVKIFNEMT--DR-NVITWTALISALGLN--------GFAQ 555 (667)
Q Consensus 496 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~--------~~~~ 555 (667)
.+.+.. | +...+..+...|... |++++|...+++.. .| +...|..+..+|... |+++
T Consensus 162 ~al~~~--p-~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--K-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--C-CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--C-CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887764 3 567778888888888 88888888888766 33 566778888888777 7888
Q ss_pred HHHHHHHHHHHcCCCC----CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHH
Q 005969 556 RALEKFREMEFLGFKP----DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKI 631 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (667)
+|++.|++..+. .| +...|..+..+|...|++++|.+.|++..+. .+.+...+..+..++...|++++|.+.
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888874 45 5667888888888888888888888887544 233445677788888888888888877
Q ss_pred HHhCC
Q 005969 632 ITTMP 636 (667)
Q Consensus 632 ~~~m~ 636 (667)
+.++.
T Consensus 315 ~~~~~ 319 (474)
T 4abn_A 315 KGKTK 319 (474)
T ss_dssp TTTCC
T ss_pred hcccc
Confidence 76663
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.3e-10 Score=113.04 Aligned_cols=206 Identities=14% Similarity=0.064 Sum_probs=174.8
Q ss_pred CHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCCh-hHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHH
Q 005969 388 LISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQY-NETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKY 461 (667)
Q Consensus 388 ~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 461 (667)
.++++.+.++.. ..+.+...+..+..++...|++ ++|++.|++..+ .+...|..+...|...|++++|...|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356666666655 3445667778888889999999 999999988763 3467899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcc---------CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc--------CChH
Q 005969 462 MRAARIYPDNYTFVSLLSACSKL---------CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC--------GSIG 524 (667)
Q Consensus 462 m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 524 (667)
..+. .|+...+..+...+... |++++|...++++.+.. |.+...+..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9985 58888899999999999 99999999999999885 55788999999999998 9999
Q ss_pred HHHHHHHhcC--CC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHH
Q 005969 525 SSVKIFNEMT--DR----NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFE 597 (667)
Q Consensus 525 ~A~~~~~~~~--~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 597 (667)
+|...|+... .| +...|..+...|...|++++|++.|++..+. .| +...+..+...+...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999877 34 6778999999999999999999999999985 55 46678889999999999999988765
Q ss_pred Hh
Q 005969 598 RM 599 (667)
Q Consensus 598 ~~ 599 (667)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-10 Score=107.74 Aligned_cols=230 Identities=10% Similarity=-0.008 Sum_probs=134.8
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh------CCC
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAA-------RIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT------EII 503 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~ 503 (667)
.++..+...+...|++++|..+++++.+. ..+....++..+...+...|+++.|...++.+.+. +..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44566667777777777777777776652 12223456666777777778888887777776654 222
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-----
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-------R----NVITWTALISALGLNGFAQRALEKFREMEFL----- 567 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----- 567 (667)
+.....+..+...|...|++++|...++++.+ + ....+..+...+...|++++|+++++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 32456677777777788888888777776552 1 2235666777788888888888888877663
Q ss_pred -CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhh------CCCCCcchh-------HHHHHHHhhcCChHHHHHHH
Q 005969 568 -GFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSY------GVEPEMDHY-------HCVVDLLVRYGHLKEAEKII 632 (667)
Q Consensus 568 -g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~ 632 (667)
+..|+ ..++..+...|...|++++|...++++.... ...+..... ..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 22332 3467777778888888888888888775421 111222111 11222222333444444455
Q ss_pred HhCC-C-CCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 633 TTMP-F-PPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 633 ~~m~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
.+.. . .....++..+...+...|+.+.|....++
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5443 2 22356667777777777887777766554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.9e-09 Score=100.30 Aligned_cols=207 Identities=11% Similarity=0.027 Sum_probs=96.5
Q ss_pred HHHHHHHHhc--CCCCCcchhHHHHHHHhh-------cCCh-------hHHHHHHhcCCC---C-CcchHHHHHHHHHHc
Q 005969 390 SDALAFVTAL--NIPRAVVPANIIAGIYNR-------TGQY-------NETVKLLSQLER---P-DIVSWNIVIAACAHN 449 (667)
Q Consensus 390 ~~a~~~~~~~--~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~---~-~~~~~~~li~~~~~~ 449 (667)
++|...|++. ..|.+...+..++..+.. .|++ ++|..+|++..+ | +...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5666666655 344444455444444432 3443 555555554432 2 222444555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH-hcCChHHH
Q 005969 450 GDYKEVLELFKYMRAARIYPDN-Y-TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG-KCGSIGSS 526 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 526 (667)
|++++|..+|++..+ +.|+. . .|..+...+.+.|+.+.|..+|++..+.. |++...|........ ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555554 23321 1 44555555555555555555555555432 222333322222211 13555555
Q ss_pred HHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 527 VKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLG-FKPD--RVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 527 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
..+|+...+ | +...|..++..+.+.|++++|..+|++..... +.|+ ...|..++....+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555554431 2 33444455555555555555555555555531 2332 2344444555555555555555555553
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-08 Score=96.69 Aligned_cols=209 Identities=13% Similarity=0.060 Sum_probs=162.0
Q ss_pred hHHHHHHhcCCC---CCcchHHHHHHHHH-------HcCCh-------hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc
Q 005969 422 NETVKLLSQLER---PDIVSWNIVIAACA-------HNGDY-------KEVLELFKYMRAARIYP-DNYTFVSLLSACSK 483 (667)
Q Consensus 422 ~~a~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 483 (667)
++|...|++... .++..|..++..+. ..|++ ++|..+|++..+. +.| +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 456667776653 45567777776665 35886 8999999999873 245 45688889999999
Q ss_pred cCChhhHHHHHHHHHHhCCCCCchh-HHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHH-HhCCChHHHH
Q 005969 484 LCNLALGSSLHGLIKKTEIISSDTF-VCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISAL-GLNGFAQRAL 558 (667)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~-~~~~~~~~A~ 558 (667)
.|+++.|..+|+++.+.. |.+.. .|..++..+.+.|++++|..+|++..+ | +...|....... ...|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999853 43454 899999999999999999999998874 3 333443333222 2369999999
Q ss_pred HHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC--cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 559 EKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE--MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 559 ~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+|++..+. .| +...|..++..+.+.|++++|..+|++......++|+ ...|..++..+.+.|+.++|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999885 44 5678889999999999999999999999654234553 457888899999999999999999887
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=7e-09 Score=101.95 Aligned_cols=297 Identities=8% Similarity=-0.023 Sum_probs=201.7
Q ss_pred cchhhhHHHHHHHH--HhhCCHHHHHHHHHhc-------CCCCCcchhHHHHHH--HhhcCChhHHH---------HHHh
Q 005969 370 ENYEYVLGSLMTSY--AKSGLISDALAFVTAL-------NIPRAVVPANIIAGI--YNRTGQYNETV---------KLLS 429 (667)
Q Consensus 370 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~-------~~~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 429 (667)
.|+..+-+.+-..| ...+++++|.++++++ ....+...|-.++.. ....+..+... +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44555555666666 7899999999999876 111222222222221 11111111111 3444
Q ss_pred cCC---CCCcc-----hHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCChhhHHHHHHH
Q 005969 430 QLE---RPDIV-----SWNIVIAACAHNGDYKEVLELFKYMRAARI-YPD----NYTFVSLLSACSKLCNLALGSSLHGL 496 (667)
Q Consensus 430 ~~~---~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 496 (667)
.+. .+... .+......+...|++++|...+++..+.-. .++ ..++..+...|...|+.+.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 332 11111 122334456789999999999999876421 122 34777888889999999999999998
Q ss_pred HHHhCCCC-----CchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHH
Q 005969 497 IKKTEIIS-----SDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTALISALGLNGFAQRALEKFR 562 (667)
Q Consensus 497 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~ 562 (667)
..+..... ....+++.+...|...|++++|...+++..+ ++ ..++..+...|...|++++|++.++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77642211 1355778899999999999999999987663 22 2467888999999999999999999
Q ss_pred HHHHc----CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC---cchhHHHHHHHhhcCC---hHHHHHHH
Q 005969 563 EMEFL----GFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE---MDHYHCVVDLLVRYGH---LKEAEKII 632 (667)
Q Consensus 563 ~~~~~----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~ 632 (667)
+..+. +.+....++..+...|.+.|++++|...+++......-.++ ...+..+...+...|+ ..+|.+.+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 98771 22223668888999999999999999999998654322222 2345566667777788 89999999
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 633 TTMPFPPN-ALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 633 ~~m~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
++....|+ ...+..+...+...|+.+.|....++
T Consensus 327 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 327 EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99864444 45666788889999999999876654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-08 Score=98.57 Aligned_cols=235 Identities=11% Similarity=0.020 Sum_probs=120.9
Q ss_pred HHHHHHhcCChHHHHHHHhccCC-----CC----cccHHHHHHHHhcCCChH-HHHHHHHHHHcCCC-CC-HhhHHHHHH
Q 005969 283 LVDFYAKCDNLEGAHLCFSEISN-----KN----IVSWNALILGYASKSSPT-SIFLLIELLQLGYR-PN-EFTFSHVLR 350 (667)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~-~~-~~~~~~~l~ 350 (667)
....+...|++++|.+.|++..+ ++ ...+..+...|...|+.+ |+..+.+..+.... ++ ...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------ 182 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR------ 182 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH------
Confidence 44556778888888888877644 22 245666777777888888 88877765542111 11 000
Q ss_pred HhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhc
Q 005969 351 SSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQ 430 (667)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 430 (667)
...+++.+...|...|++++|.+.+++ |.++...
T Consensus 183 ---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------------al~~~~~ 216 (383)
T 3ulq_A 183 ---------------------LLQCHSLFATNFLDLKQYEDAISHFQK-------------------------AYSMAEA 216 (383)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------HHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHhcCHHHHHHHHHH-------------------------HHHHHHH
Confidence 012234566677777777777775543 2222222
Q ss_pred CCCC--CcchHHHHHHHHHHcCChhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCC
Q 005969 431 LERP--DIVSWNIVIAACAHNGDYKEVLELFKYMRAA----RI-YPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEII 503 (667)
Q Consensus 431 ~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 503 (667)
...+ ...++..+...|...|++++|...+++..+. +. +....++..+...+.+.|+.+.|...+++..+....
T Consensus 217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 2110 1124555666666666666666666665441 22 122344555555555566666665555554433110
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCC-HhHHHHH
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGF---AQRALEKFREMEFLGFKPD-RVALIAV 579 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~g~~p~-~~~~~~l 579 (667)
..++.. ...+..+...+...|+ .++|+.++++. +..|+ ...+..+
T Consensus 297 ~~~~~~----------------------------~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 297 AGDVIY----------------------------LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HTCHHH----------------------------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred cCCHHH----------------------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 001100 1123334445555555 44444444443 22222 2345556
Q ss_pred HHHHhccCCHHHHHHHHHHhH
Q 005969 580 LTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~ 600 (667)
...|...|++++|...+++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666666653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=109.03 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=132.5
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC----CCCcchHHHHHHHHHH
Q 005969 373 EYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE----RPDIVSWNIVIAACAH 448 (667)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~ 448 (667)
..++..+...+...|++++|..++++. .++..... ......+..+...|..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------------~~~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQA-------------------------LEDLEKTSGHDHPDVATMLNILALVYRD 81 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------HHHHHHHHCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 344557778888888888888877653 11211111 1122345556666666
Q ss_pred cCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHh------CCCCCchhHHhHHHH
Q 005969 449 NGDYKEVLELFKYMRAA------RIYP-DNYTFVSLLSACSKLCNLALGSSLHGLIKKT------EIISSDTFVCNMLID 515 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~ 515 (667)
.|++++|...+++..+. +-.| ...++..+...+...|+++.|...++++.+. +..+.....+..+..
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 77777777777666543 1122 2345666667777777777777777766654 222324556667777
Q ss_pred HHHhcCChHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCC------
Q 005969 516 MYGKCGSIGSSVKIFNEMTD-------R----NVITWTALISALGLNGFAQRALEKFREMEFL-------GFKP------ 571 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------g~~p------ 571 (667)
.|...|++++|...++++.+ + ...++..+...|...|++++|.+.++++.+. ...+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 77777777777777766542 1 1235666677777777777777777776652 1111
Q ss_pred -CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 572 -DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 572 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
....+..+...+...+.+.+|...+...... .+....++..+..+|.+.|++++|.+.+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1123333444455566666666666666322 2334456777777777777777777777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.2e-09 Score=90.45 Aligned_cols=160 Identities=18% Similarity=0.094 Sum_probs=103.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++.|...++.+.+.. |.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 4444555556666666666666655432 2345556666666666666666666666666553 335566666666666
Q ss_pred hcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHH
Q 005969 519 KCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
..|++++|.+.++.+. ..+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777666654 2345566677777777788888888888777752 33456777777788888888888888
Q ss_pred HHHhHHh
Q 005969 596 FERMNRS 602 (667)
Q Consensus 596 ~~~~~~~ 602 (667)
+++....
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8777443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-07 Score=91.18 Aligned_cols=199 Identities=10% Similarity=-0.012 Sum_probs=134.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCC----CcchHHHHHHHHHHcCChh
Q 005969 378 SLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERP----DIVSWNIVIAACAHNGDYK 453 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 453 (667)
.+...+...|++++|.+.+++ +.++......+ ....+..+...+...|+++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~-------------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEK-------------------------AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-------------------------HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH-------------------------HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 455667777888887775553 22233332222 1234555677788889999
Q ss_pred HHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHh-----HHHHHHHhcCChH
Q 005969 454 EVLELFKYMRAARIY--P--DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCN-----MLIDMYGKCGSIG 524 (667)
Q Consensus 454 ~A~~~~~~m~~~g~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~ 524 (667)
+|...+++..+..-. + ...++..+...+...|++++|...++........+.....+. ..+..+...|+++
T Consensus 153 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232 (373)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence 999999887654321 1 234677777888889999999999998876532221211221 2334577899999
Q ss_pred HHHHHHHhcCCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCH-hHHHHHHHHHhccCCHHHH
Q 005969 525 SSVKIFNEMTDRNV-------ITWTALISALGLNGFAQRALEKFREMEFL----GFKPDR-VALIAVLTACRHGGLVREG 592 (667)
Q Consensus 525 ~A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p~~-~~~~~li~~~~~~g~~~~A 592 (667)
+|...++...+++. ..+..+...+...|++++|...+++.... |..++. ..+..+..++...|++++|
T Consensus 233 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 99999998875321 24567778889999999999999887653 222222 2666777888899999999
Q ss_pred HHHHHHhHH
Q 005969 593 MELFERMNR 601 (667)
Q Consensus 593 ~~~~~~~~~ 601 (667)
...+++...
T Consensus 313 ~~~l~~al~ 321 (373)
T 1hz4_A 313 QRVLLDALK 321 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988744
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-08 Score=87.63 Aligned_cols=159 Identities=13% Similarity=-0.014 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHH
Q 005969 472 YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISAL 548 (667)
Q Consensus 472 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~ 548 (667)
..+..+...+...|+++.|...++.+.+.. |.+...+..+...+...|++++|...++.+. . .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 355566667777788888888777766543 3356777777777778888888888777665 2 3456677777777
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHH
Q 005969 549 GLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEA 628 (667)
Q Consensus 549 ~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 628 (667)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 77788888888887777652 335667777777777788888888888777544 234456677777777788888888
Q ss_pred HHHHHhC
Q 005969 629 EKIITTM 635 (667)
Q Consensus 629 ~~~~~~m 635 (667)
.+.+++.
T Consensus 164 ~~~~~~~ 170 (186)
T 3as5_A 164 LPHFKKA 170 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-08 Score=106.85 Aligned_cols=160 Identities=13% Similarity=0.062 Sum_probs=133.0
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYP-DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
...|+.+...|.+.|++++|+..|++..+. .| +..++..+..++.+.|++++|.+.+++..+.. |.+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 356778888888889999999999888874 45 46688888888899999999999999888875 54688888999
Q ss_pred HHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVR 590 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~ 590 (667)
..|...|++++|.+.|++.. +| +...|+.+...|...|++++|++.|++..+. .|+ ...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998776 34 5678888999999999999999999998884 665 668888999999999999
Q ss_pred HHHHHHHHhHH
Q 005969 591 EGMELFERMNR 601 (667)
Q Consensus 591 ~A~~~~~~~~~ 601 (667)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-08 Score=91.72 Aligned_cols=248 Identities=12% Similarity=0.050 Sum_probs=165.9
Q ss_pred HHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHH
Q 005969 380 MTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELF 459 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 459 (667)
++-..-.|++..++.-...+.............+++...|+++... ...|....+..+.. |...+ |+..|
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~-~~~~~----a~~~l 89 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLYVQ-FLDTK----NIEEL 89 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHHHH-HHTTT----CCHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHHHH-Hhccc----HHHHH
Confidence 3455567888888875555433333334445567788888776421 11233223333333 33322 77888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-
Q 005969 460 KYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR- 536 (667)
Q Consensus 460 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~- 536 (667)
++..+.+ .++..++..+..++...|+.++|++++......+..+.+...+..++..+.+.|+.+.|.+.++.|. .|
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 8877665 5666677788888999999999999999886665322367888889999999999999999999887 35
Q ss_pred ----ChhhHHHHHHH--HHhCC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh-C---
Q 005969 537 ----NVITWTALISA--LGLNG--FAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSY-G--- 604 (667)
Q Consensus 537 ----~~~~~~~li~~--~~~~~--~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~--- 604 (667)
+..+...|..+ ....| +..+|..+|+++.+. .|+..+-..++.++...|++++|.+.++.+.+.+ .
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~ 246 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQ 246 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTT
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 23455555555 33333 899999999998774 5653444445558889999999999999774432 1
Q ss_pred ----CCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH
Q 005969 605 ----VEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNAL 642 (667)
Q Consensus 605 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~ 642 (667)
-+.++.++..++.+....|+ +|.++++++. ..|+..
T Consensus 247 k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 247 KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 14466677666666666776 7888888884 455543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.97 E-value=8e-08 Score=94.22 Aligned_cols=280 Identities=11% Similarity=0.059 Sum_probs=196.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc--CCCCCcc-----hhHHHHHHHhhcCChhHHHHHHhcCCC-----CCc----chHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTAL--NIPRAVV-----PANIIAGIYNRTGQYNETVKLLSQLER-----PDI----VSWNI 441 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~ 441 (667)
.....+...|++++|...+++. ..+.+.. .+..+...+...|++++|...+++... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3445667889999999999886 2232221 345666778889999999999887652 222 23556
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCC--C-chhHHh
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAA----RIY--PD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIIS--S-DTFVCN 511 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~-~~~~~~ 511 (667)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|+++.|...++...+..... + ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888999999999999987653 222 32 3456667788899999999999999988764321 1 235677
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC----CCCh-hhHH-----HHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HhHHHH
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMT----DRNV-ITWT-----ALISALGLNGFAQRALEKFREMEFLGFKPD---RVALIA 578 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~-----~li~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~~~ 578 (667)
.+...+...|++++|...+++.. +++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 88889999999999999998764 2222 2222 233447789999999999998876432211 225677
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHh---hCCCCCc-chhHHHHHHHhhcCChHHHHHHHHhCC-----------CCCCHHH
Q 005969 579 VLTACRHGGLVREGMELFERMNRS---YGVEPEM-DHYHCVVDLLVRYGHLKEAEKIITTMP-----------FPPNALI 643 (667)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~-----------~~p~~~~ 643 (667)
+...+...|++++|...+++.... .+..++. ..+..+..++...|+.++|.+.+++.. +......
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~ 338 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 338 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHH
Confidence 888899999999999999987443 1222222 366677888899999999999887751 1122234
Q ss_pred HHHHHHHHHhcCCh
Q 005969 644 WRTFLEGCQRCRIA 657 (667)
Q Consensus 644 ~~~l~~~~~~~~~~ 657 (667)
...++..+.....+
T Consensus 339 ~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 339 MAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCC
Confidence 55667777777665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=5e-08 Score=88.03 Aligned_cols=197 Identities=11% Similarity=0.040 Sum_probs=128.4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...++...+.. |.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHHH
Confidence 3455666677777788888888888887776533666666667777778888888888888877764 44667777788
Q ss_pred HHHHhcCChHHHHHHHHhcC--CC-Ch-------hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HhHHHHHHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMT--DR-NV-------ITWTALISALGLNGFAQRALEKFREMEFLGFKPD---RVALIAVLT 581 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~--~~-~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~~~li~ 581 (667)
..|...|++++|...+++.. .| +. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 88888888888888887766 23 23 34666777778888888888888888774 565 346666666
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 005969 582 ACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIW 644 (667)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~ 644 (667)
+|...| ..+++++... + ..+...|.... ....+.+++|.+.+++.. ..|+....
T Consensus 162 ~~~~~~-----~~~~~~a~~~-~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPL-A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp HHHHHH-----HHHHHHHGGG-T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHH-----HHHHHHHHhc-c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 665544 3334444221 1 12223333322 234556778888877772 45544333
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-08 Score=105.82 Aligned_cols=162 Identities=11% Similarity=0.074 Sum_probs=142.1
Q ss_pred CCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHH
Q 005969 468 YPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTA 543 (667)
Q Consensus 468 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ 543 (667)
.|+ ..+|+.+...+.+.|++++|.+.+++..+.. |.+...+..+..+|.+.|++++|...|++.. +| +...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344 4689999999999999999999999999885 5578999999999999999999999999877 45 5679999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
+...|...|++++|++.|++..+. .|+ ...|..+..+|...|++++|++.|++..+. -+-+...+..+..++...
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhc
Confidence 999999999999999999999985 664 679999999999999999999999998655 233467889999999999
Q ss_pred CChHHHHHHHHhC
Q 005969 623 GHLKEAEKIITTM 635 (667)
Q Consensus 623 g~~~~A~~~~~~m 635 (667)
|++++|.+.+++.
T Consensus 159 g~~~~A~~~~~ka 171 (723)
T 4gyw_A 159 CDWTDYDERMKKL 171 (723)
T ss_dssp TCCTTHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 9999999888765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-07 Score=93.28 Aligned_cols=165 Identities=12% Similarity=0.023 Sum_probs=86.9
Q ss_pred HHHHHhcCChHHHHHHHhccCC-----CC----cccHHHHHHHHhcCCChH-HHHHHHHHHHcCCC-CC-HhhHHHHHHH
Q 005969 284 VDFYAKCDNLEGAHLCFSEISN-----KN----IVSWNALILGYASKSSPT-SIFLLIELLQLGYR-PN-EFTFSHVLRS 351 (667)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~-~~-~~~~~~~l~~ 351 (667)
...+...|++++|...|++..+ ++ ...+..+...|...|+.+ |...+.+..+.... ++ ...
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~------- 180 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR------- 180 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH-------
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh-------
Confidence 3445667777777777766543 22 234556666777778877 77777765442110 11 000
Q ss_pred hhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcC
Q 005969 352 SLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQL 431 (667)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 431 (667)
...+++.+...|...|++++|.+.+++ |.++.+..
T Consensus 181 --------------------~~~~~~~lg~~y~~~~~~~~A~~~~~~-------------------------al~~~~~~ 215 (378)
T 3q15_A 181 --------------------TIQSLFVIAGNYDDFKHYDKALPHLEA-------------------------ALELAMDI 215 (378)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------HHHHHHHT
T ss_pred --------------------HHHHHHHHHHHHHHhCCHHHHHHHHHH-------------------------HHHHHHHc
Confidence 112234566677777777777775543 22222222
Q ss_pred CCC--CcchHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 432 ERP--DIVSWNIVIAACAHNGDYKEVLELFKYMRAA----RIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 432 ~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
..+ ...++..+...|...|++++|...+++..+. +.+....++..+...+.+.|+.+.|...+++..+.
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 111 1234455556666666666666666665441 11112344555555555555555555555555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.94 E-value=7.7e-09 Score=96.95 Aligned_cols=196 Identities=10% Similarity=-0.012 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHHh------CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-------C-
Q 005969 471 NYTFVSLLSACSKLCNLALGSSLHGLIKKT------EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-------R- 536 (667)
Q Consensus 471 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~- 536 (667)
..++..+...+...|+++.|...++.+.+. +..+....++..+...|...|++++|...+++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555566666666666666666655544 22222345566666666666666666666665441 1
Q ss_pred ---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhh---
Q 005969 537 ---NVITWTALISALGLNGFAQRALEKFREMEFL------GFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSY--- 603 (667)
Q Consensus 537 ---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--- 603 (667)
....+..+...|...|++++|++.+++..+. +-.|+ ..++..+...|...|++++|..++++.....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1235666667777777777777777776653 11222 3466677777777777777777777664321
Q ss_pred ---CCCCCc-chhHHHHHHHhhcC------ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 604 ---GVEPEM-DHYHCVVDLLVRYG------HLKEAEKIITTMP-FPP-NALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 604 ---~~~~~~-~~~~~l~~~~~~~g------~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
...+.. ..+..+.......+ .+.++...++... ..| ...++..+...+...|+.+.|....++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112222 22222222222222 2333444444443 112 245566667777777777777666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=95.85 Aligned_cols=198 Identities=15% Similarity=0.054 Sum_probs=133.4
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHh------CC
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAA------RIYP-DNYTFVSLLSACSKLCNLALGSSLHGLIKKT------EI 502 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 502 (667)
..++..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|...++++.+. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456777888888899999999888887654 2223 3457888888889999999999988887765 11
Q ss_pred CCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc----
Q 005969 503 ISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-------R----NVITWTALISALGLNGFAQRALEKFREMEFL---- 567 (667)
Q Consensus 503 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---- 567 (667)
.|.....+..+...|...|++++|...+++..+ + ...++..+...|...|++++|.+.+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 233567788888899999999999988887652 1 2346778888899999999999999888763
Q ss_pred ---CCCCCH-hHHHHHHHHHhccCCHHH------HHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 568 ---GFKPDR-VALIAVLTACRHGGLVRE------GMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 568 ---g~~p~~-~~~~~li~~~~~~g~~~~------A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
...+.. ..+..+...+...+.... +...++.. .. ..+....++..+..+|.+.|++++|.+++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC-KV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC-CC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 123332 234444434433333322 22222222 01 11223456788899999999999999988764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-07 Score=88.96 Aligned_cols=195 Identities=7% Similarity=-0.049 Sum_probs=140.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhHHhHH
Q 005969 443 IAACAHNGDYKEVLELFKYMRAA----RIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD----TFVCNML 513 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 513 (667)
...|...|++++|...|.+..+. |-+++ ..+|..+...|...|++++|...+++..+......+ ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677888888888888876543 32222 457888888899999999999988887765311111 4578888
Q ss_pred HHHHHhc-CChHHHHHHHHhcCC--C---C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH------hHHH
Q 005969 514 IDMYGKC-GSIGSSVKIFNEMTD--R---N----VITWTALISALGLNGFAQRALEKFREMEFLGFKPDR------VALI 577 (667)
Q Consensus 514 ~~~~~~~-~~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~------~~~~ 577 (667)
...|... |++++|...|++..+ | + ..++..+...+...|++++|+..|++..+....... ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999996 999999999988763 1 1 346888899999999999999999999985322221 1567
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcc------hhHHHHHHHh--hcCChHHHHHHHHhCC-CCCC
Q 005969 578 AVLTACRHGGLVREGMELFERMNRSYGVEPEMD------HYHCVVDLLV--RYGHLKEAEKIITTMP-FPPN 640 (667)
Q Consensus 578 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g~~~~A~~~~~~m~-~~p~ 640 (667)
.+..++...|++++|...+++... +.|+.. .+..++.++. ..+++++|.+.|+++. ..|.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 788889999999999999998743 334321 2444566664 4567999999998874 4443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.8e-08 Score=90.78 Aligned_cols=197 Identities=8% Similarity=-0.028 Sum_probs=143.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh----CCCCCchhHHhHHHHHHHhcCChHHH
Q 005969 451 DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT----EIISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
++++|...|.+. ...|...|++++|...+.+..+. +..+....+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 34577889999999999887664 21111256889999999999999999
Q ss_pred HHHHHhcCC-----CC----hhhHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC-------HhHHHHHHHHHhccCCH
Q 005969 527 VKIFNEMTD-----RN----VITWTALISALGLN-GFAQRALEKFREMEFLGFKPD-------RVALIAVLTACRHGGLV 589 (667)
Q Consensus 527 ~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~g~~p~-------~~~~~~li~~~~~~g~~ 589 (667)
...++...+ .+ ..+++.+...|... |++++|+..|++..+. .|+ ..++..+...+.+.|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999987763 12 35788899999996 9999999999998873 221 34788899999999999
Q ss_pred HHHHHHHHHhHHhhCCCCCcc-----hhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH------HHHHHHHHHH--hcC
Q 005969 590 REGMELFERMNRSYGVEPEMD-----HYHCVVDLLVRYGHLKEAEKIITTMP-FPPNAL------IWRTFLEGCQ--RCR 655 (667)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~------~~~~l~~~~~--~~~ 655 (667)
++|...+++......-.+... .|..+..++...|++++|.+.+++.. +.|+.. .+..++.++. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 999999999865421122211 46778888999999999999999983 455422 3444555554 224
Q ss_pred ChhHHhhhh
Q 005969 656 IAKYDTLNS 664 (667)
Q Consensus 656 ~~~~a~~~~ 664 (667)
+++.|....
T Consensus 255 ~~~~A~~~~ 263 (292)
T 1qqe_A 255 QLSEHCKEF 263 (292)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455555444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.9e-08 Score=87.08 Aligned_cols=150 Identities=11% Similarity=-0.009 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHH
Q 005969 469 PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALI 545 (667)
Q Consensus 469 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li 545 (667)
.|+..+......+...|++++|...++...+.... ++...+..+...+...|++++|...++... .| +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45677777888888999999999999998887632 467777778889999999999999998876 34 445788888
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC-H-------hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC---cchhHH
Q 005969 546 SALGLNGFAQRALEKFREMEFLGFKPD-R-------VALIAVLTACRHGGLVREGMELFERMNRSYGVEPE---MDHYHC 614 (667)
Q Consensus 546 ~~~~~~~~~~~A~~~~~~~~~~g~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~ 614 (667)
..|...|++++|++.+++..+. .|+ . ..|..+...+...|++++|.+.+++..+ ..|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 8999999999999999998885 443 4 4577778888889999999999988743 3444 466777
Q ss_pred HHHHHhhcCC
Q 005969 615 VVDLLVRYGH 624 (667)
Q Consensus 615 l~~~~~~~g~ 624 (667)
+..++...|+
T Consensus 159 l~~~~~~~~~ 168 (228)
T 4i17_A 159 LGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-07 Score=76.35 Aligned_cols=123 Identities=16% Similarity=0.139 Sum_probs=65.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHh
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGL 550 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 550 (667)
+..+...+...|+++.|..+++.+.+.. |.+...+..+...+...|++++|...++++. ..+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4445555556666666666666655543 2244555555555555555555555555543 1233445555555555
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 551 NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 555555555555555431 223444555555555555555555555554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-07 Score=74.32 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY 517 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 517 (667)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|+++.|...++.+.+.+ |.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677788888999999999999988754 3466778888888888999999999999988875 44677888888999
Q ss_pred HhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 518 GKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 518 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
...|++++|.+.++.+.+ .+...+..+...+...|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999988762 35677888899999999999999999998874
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-07 Score=85.10 Aligned_cols=163 Identities=8% Similarity=-0.021 Sum_probs=129.2
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHH-
Q 005969 468 YPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RNVITWTAL- 544 (667)
Q Consensus 468 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l- 544 (667)
+.+...+..+...+.+.|+.+.|...++.+.+.. |.+...+..+...+...|++++|...++.+.. |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 3445567777778889999999999999998875 55788899999999999999999999999874 554433222
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcC
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYG 623 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 623 (667)
...+...++.++|+..+++.... .| +...+..+...+...|++++|...++++.+...-..+...+..++.++...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23366777888899999998885 45 5678889999999999999999999999766222223567889999999999
Q ss_pred ChHHHHHHHHh
Q 005969 624 HLKEAEKIITT 634 (667)
Q Consensus 624 ~~~~A~~~~~~ 634 (667)
+.++|...+.+
T Consensus 270 ~~~~a~~~~r~ 280 (287)
T 3qou_A 270 TGDALASXYRR 280 (287)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 99998887764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.4e-07 Score=83.15 Aligned_cols=160 Identities=16% Similarity=0.047 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-CchhHHhHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPD----NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIIS-SDTFVCNML 513 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l 513 (667)
+-.+...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|+++.|...++.+.+..... .....+..+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3344444555555555555555554432 21 3344445555555555555555555555543211 112334444
Q ss_pred HHHHHh--------cCChHHHHHHHHhcC--CCCh-hh-----------------HHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 514 IDMYGK--------CGSIGSSVKIFNEMT--DRNV-IT-----------------WTALISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 514 ~~~~~~--------~~~~~~A~~~~~~~~--~~~~-~~-----------------~~~li~~~~~~~~~~~A~~~~~~~~ 565 (667)
...+.. .|++++|...|+++. .|+. .. +..+...|...|++++|+..|+++.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 444444 455555555555443 1211 11 2344566666677777777777666
Q ss_pred HcCCCCC----HhHHHHHHHHHhcc----------CCHHHHHHHHHHhHHh
Q 005969 566 FLGFKPD----RVALIAVLTACRHG----------GLVREGMELFERMNRS 602 (667)
Q Consensus 566 ~~g~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~ 602 (667)
+. .|+ ...+..+..+|... |++++|...++++.+.
T Consensus 176 ~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 176 DA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 63 333 23455555556544 6666666666666444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-07 Score=85.74 Aligned_cols=188 Identities=9% Similarity=0.005 Sum_probs=139.6
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc---hhHHhHHHHHHHhcCChHHHHHHHHhcCC--CC----hh
Q 005969 469 PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD---TFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RN----VI 539 (667)
Q Consensus 469 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~ 539 (667)
.+...+-.+...+.+.|++++|...|+.+.+.. |.+ ...+..+...|.+.|++++|...|+...+ |+ ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 355667777788899999999999999998875 323 67888899999999999999999998873 42 23
Q ss_pred hHHHHHHHHHh--------CCChHHHHHHHHHHHHcCCCCCH-hHH-----------------HHHHHHHhccCCHHHHH
Q 005969 540 TWTALISALGL--------NGFAQRALEKFREMEFLGFKPDR-VAL-----------------IAVLTACRHGGLVREGM 593 (667)
Q Consensus 540 ~~~~li~~~~~--------~~~~~~A~~~~~~~~~~g~~p~~-~~~-----------------~~li~~~~~~g~~~~A~ 593 (667)
.+..+..++.. .|++++|+..|+++.+. .|+. ... ..+...|.+.|++++|.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 56677888888 99999999999999985 4542 333 55688899999999999
Q ss_pred HHHHHhHHhhCCCC-CcchhHHHHHHHhhc----------CChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCh
Q 005969 594 ELFERMNRSYGVEP-EMDHYHCVVDLLVRY----------GHLKEAEKIITTMP-FPPNA----LIWRTFLEGCQRCRIA 657 (667)
Q Consensus 594 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~-~~p~~----~~~~~l~~~~~~~~~~ 657 (667)
..|+++.+...-.+ ....+..+..+|... |++++|.+.++++. ..|+. .....+-......++.
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 99999966522111 234677788888766 88999999998883 34443 2333333444444444
Q ss_pred hHH
Q 005969 658 KYD 660 (667)
Q Consensus 658 ~~a 660 (667)
+.+
T Consensus 249 ~~~ 251 (261)
T 3qky_A 249 EGD 251 (261)
T ss_dssp HTC
T ss_pred hhh
Confidence 443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.2e-07 Score=77.91 Aligned_cols=156 Identities=10% Similarity=0.006 Sum_probs=101.5
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHHHHH-HHhC
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RNVITWTALISA-LGLN 551 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~ 551 (667)
..+...+.+.|+++.|...++...+.. |.+...+..+...+...|++++|...++...+ |+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 344455666777777777777666553 44667777777888888888888888887763 433222222111 1122
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHH
Q 005969 552 GFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEK 630 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (667)
+...+|+..+++..+. .| +...+..+...+...|++++|...++++.+...-..+...+..+..++...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2334567788887774 55 46677888888888888888888888774431111224567788888888888888887
Q ss_pred HHHh
Q 005969 631 IITT 634 (667)
Q Consensus 631 ~~~~ 634 (667)
.+.+
T Consensus 166 ~y~~ 169 (176)
T 2r5s_A 166 KYRR 169 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.5e-07 Score=79.62 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=104.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNY-TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC 520 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 520 (667)
....+...|++++|+..|++..+. .|+.. .+.. . . .... ....+.....+...|.+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~---~~~~---------------~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-N---VDKN---------------SEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-H---SCTT---------------SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-h---hcch---------------hhhhHHHHHHHHHHHHHC
Confidence 344556777888888888777763 34432 2222 0 0 0000 000122233467777777
Q ss_pred CChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCH--HHHHH
Q 005969 521 GSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLV--REGME 594 (667)
Q Consensus 521 ~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~--~~A~~ 594 (667)
|++++|...|++.. .| +...+..+...+...|++++|+..|++..+. .| +..++..+...|...|.. ..+..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 78888877777765 33 5567777777788888888888888887774 45 355777777776555432 33444
Q ss_pred HHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005969 595 LFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWRTFLE 649 (667)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~ 649 (667)
.++... ...|....+.....++...|++++|.+.|++. ...|+......+..
T Consensus 146 ~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444331 11222223344555666677888888888776 46777665555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-06 Score=76.55 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=115.4
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----ChhhHHHHHHHHHHhCCCCCchhH
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC----NLALGSSLHGLIKKTEIISSDTFV 509 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 509 (667)
.++..+..+...|...+++++|..+|++..+.| +...+..+-..|.. + +.++|.+.+++..+.+ ++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g----~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG----SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT----CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC----CHHH
Confidence 566667777777778888888888888887765 45666666666766 5 7888888888887765 5667
Q ss_pred HhHHHHHHHh----cCChHHHHHHHHhcCCCC-----hhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHH
Q 005969 510 CNMLIDMYGK----CGSIGSSVKIFNEMTDRN-----VITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVAL 576 (667)
Q Consensus 510 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~ 576 (667)
+..|...|.. .+++++|...|+...+.+ ...+..|...|.. .++.++|+++|++..+. ..+...+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~ 165 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAE 165 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHH
Confidence 7777777776 778888888888777432 5677777777777 67788888888888775 2344566
Q ss_pred HHHHHHHhcc-C-----CHHHHHHHHHHhHHh
Q 005969 577 IAVLTACRHG-G-----LVREGMELFERMNRS 602 (667)
Q Consensus 577 ~~li~~~~~~-g-----~~~~A~~~~~~~~~~ 602 (667)
..|...|... | ++++|..+++...+.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 6666666542 2 788888888877433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.64 E-value=4.5e-07 Score=83.15 Aligned_cols=175 Identities=9% Similarity=-0.020 Sum_probs=95.7
Q ss_pred HHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhcCChhHHHHhhccCC
Q 005969 125 CMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGF-DYELLVANSLVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 125 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
|++.|++..+.+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666677666544 44555555666777777777777777777655443 2355566666677777777777777776664
Q ss_pred CCC-------chhHHHHHHH--HHc--cCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 005969 204 IRD-------VVSWNTIIGA--LAE--SENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNA 272 (667)
Q Consensus 204 ~~~-------~~~~~~li~~--~~~--~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 272 (667)
+.+ ..+...+..+ ... .+++.+|..+|+++.+. .|+..+-..++.++...|++++|+..++.+.+.-
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 321 2233333333 222 23677777777776554 3442333333445666666666666666544331
Q ss_pred ---------CCCCchHHHHHHHHHHhcCChHHHHHHHhccC
Q 005969 273 ---------LECDVFVGSALVDFYAKCDNLEGAHLCFSEIS 304 (667)
Q Consensus 273 ---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (667)
-+.+..+...+|......|+ +|.+++.++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~ 280 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV 280 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 12244444344444444454 4455544443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-07 Score=95.29 Aligned_cols=181 Identities=11% Similarity=0.011 Sum_probs=118.6
Q ss_pred HHcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 447 AHNGDYKEVLELFKYMR--------AARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
...|++++|++.+++.. +. -+.+...+..+...+.+.|++++|...++.+.+.. |.+...+..+...|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 55677777777777776 32 12234566666677777777777777777777664 446667777777777
Q ss_pred hcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHH
Q 005969 519 KCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGME 594 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~ 594 (667)
..|++++|...|++.. .| +...|..+..++...|++++ ++.|++..+. .| +...|..+..++.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777765 33 45567777777777777777 7777777764 44 35567777777777777777777
Q ss_pred HHHHhHHhhCCCCC-cchhHHHHHHHhhcC--------ChHHHHHHHHhCC
Q 005969 595 LFERMNRSYGVEPE-MDHYHCVVDLLVRYG--------HLKEAEKIITTMP 636 (667)
Q Consensus 595 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~ 636 (667)
.|++..+ ..|+ ...+..+..++...| ++++|.+.+..+.
T Consensus 556 ~~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 556 TLDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 7776632 2343 345556666665433 3566666666663
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-06 Score=76.27 Aligned_cols=172 Identities=8% Similarity=-0.095 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC----ChHHHHH
Q 005969 453 KEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG----SIGSSVK 528 (667)
Q Consensus 453 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~ 528 (667)
.+|.+.|++..+.| +...+..+-..|...++.++|...+++..+.+ ++..+..|...|.. + +.++|.+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 45778888888865 67778888888888999999999999998876 67788888888888 6 8999999
Q ss_pred HHHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHhc----cCCHHHHHHHHHH
Q 005969 529 IFNEMTD-RNVITWTALISALGL----NGFAQRALEKFREMEFLGFK-PDRVALIAVLTACRH----GGLVREGMELFER 598 (667)
Q Consensus 529 ~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 598 (667)
.|+...+ .+...+..|...|.. .+++++|+++|++..+.|.. .++..+..|...|.. .+++++|..+|++
T Consensus 75 ~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 75 LAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998875 466788888888887 88999999999999886521 126778888888887 8899999999999
Q ss_pred hHHhhCCCCCcchhHHHHHHHhhc-C-----ChHHHHHHHHhC
Q 005969 599 MNRSYGVEPEMDHYHCVVDLLVRY-G-----HLKEAEKIITTM 635 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m 635 (667)
..+. +.+...+..|...|... | +.++|.+++++.
T Consensus 155 A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 155 SSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 8443 34556788888888653 3 899999999876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.8e-07 Score=84.62 Aligned_cols=211 Identities=8% Similarity=-0.009 Sum_probs=123.9
Q ss_pred hcCChhHHHHHHhcCCC----------CCc----chHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CC-C-HHHHHHH
Q 005969 417 RTGQYNETVKLLSQLER----------PDI----VSWNIVIAACAHNGDYKEVLELFKYMRAARI---YP-D-NYTFVSL 477 (667)
Q Consensus 417 ~~~~~~~a~~~~~~~~~----------~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p-~-~~~~~~l 477 (667)
..|++++|.+++++..+ ++. ..|......|...|++++|...|.+..+... .+ . ..+|..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677778777765431 111 2455566667777888888877777654311 11 1 2366677
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCC----CchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHH
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIIS----SDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTAL 544 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l 544 (667)
...|...|++++|...+++..+..... ....++..+...|.. |++++|...|++..+ .+ ..++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 777777788888888777765542111 013456667777777 777777777776552 11 3456667
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc---chhHHHH
Q 005969 545 ISALGLNGFAQRALEKFREMEFL----GFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM---DHYHCVV 616 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~ 616 (667)
...|...|++++|++.|++..+. +..+. ...+..+..++...|++++|...|++.. ...-.++. .....++
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence 77777778888888877777652 11111 1245556666666778888887777764 21111111 1233444
Q ss_pred HHHhhcCChHHHHH
Q 005969 617 DLLVRYGHLKEAEK 630 (667)
Q Consensus 617 ~~~~~~g~~~~A~~ 630 (667)
.++ ..|+.+.+.+
T Consensus 241 ~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 241 QAY-DEQDEEQLLR 253 (307)
T ss_dssp HHH-HTTCHHHHHH
T ss_pred HHH-HhcCHHHHHH
Confidence 444 4566666655
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=83.07 Aligned_cols=193 Identities=10% Similarity=-0.042 Sum_probs=140.8
Q ss_pred hCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChhHHH
Q 005969 386 SGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER-----PD----IVSWNIVIAACAHNGDYKEVL 456 (667)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~ 456 (667)
.+++++|...|. .....|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+
T Consensus 29 ~~~~~~A~~~~~------------~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 96 (307)
T 2ifu_A 29 KPDYDSAASEYA------------KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAV 96 (307)
T ss_dssp SCCHHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGH
T ss_pred CCCHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 466666666544 456778889999999988887652 11 346888889999999999999
Q ss_pred HHHHHHHHcCC---CCC--HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCC----CchhHHhHHHHHHHhcCChHHHH
Q 005969 457 ELFKYMRAARI---YPD--NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIIS----SDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 457 ~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
..|++..+.-. .|. ..++..+...|.. |+++.|...+++..+..... ....++..+...|...|++++|.
T Consensus 97 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 175 (307)
T 2ifu_A 97 QYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998765311 222 3577788888888 99999999999887653111 12467888999999999999999
Q ss_pred HHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH------hHHHHHHHHHhccCCHHHH
Q 005969 528 KIFNEMTD-----RN----VITWTALISALGLNGFAQRALEKFREMEFLGFKPDR------VALIAVLTACRHGGLVREG 592 (667)
Q Consensus 528 ~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~------~~~~~li~~~~~~g~~~~A 592 (667)
..|++..+ ++ ...+..+..++...|++++|...|++.. . .|+. .....++.++ ..|+.+.+
T Consensus 176 ~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~ 251 (307)
T 2ifu_A 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQL 251 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHH
Confidence 99998763 22 2256667778888899999999999988 4 4431 1344555555 56777666
Q ss_pred HHH
Q 005969 593 MEL 595 (667)
Q Consensus 593 ~~~ 595 (667)
.++
T Consensus 252 ~~~ 254 (307)
T 2ifu_A 252 LRV 254 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-06 Score=76.68 Aligned_cols=123 Identities=8% Similarity=-0.073 Sum_probs=74.1
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCH
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLV 589 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 589 (667)
+..+...+...|++++|...|++..+|+...|..+...|...|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 33445555666666666666666666666666666666666666666666666666542 22345666666666666666
Q ss_pred HHHHHHHHHhHHhhCCCCCc----------------chhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 590 REGMELFERMNRSYGVEPEM----------------DHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
++|.+.+++..+. .+.+. ..+..+..++.+.|++++|.+.+++.
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666432 11111 45556666666666666666666665
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-06 Score=77.81 Aligned_cols=107 Identities=12% Similarity=0.012 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCCCCc---chHHH----------------HHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLERPDI---VSWNI----------------VIAACAHNGDYKEVLELFKYMRAARIYP 469 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p 469 (667)
......+...|++++|+..|++..+.++ ..|.. +...|.+.|++++|+..|++..+.. +-
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 3455677899999999999998874332 23333 4444555555555555555554432 22
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 470 DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 470 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
+...+..+...+...|+++.|...++++.+.. |.++..+..+...|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYY 133 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 33444444455555555555555555554443 323444444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=92.69 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=140.0
Q ss_pred hccCChhhHHHHHHHHH--------HhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHh
Q 005969 482 SKLCNLALGSSLHGLIK--------KTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGL 550 (667)
Q Consensus 482 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 550 (667)
...|+.++|.+.++... +. .|.+...+..+...|...|++++|.+.|+++.+ | +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 77899999999999988 43 355778899999999999999999999998873 4 66789999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHH
Q 005969 551 NGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
.|++++|++.|++..+. .| +...+..+..++.+.|++++ .+.|++..+. -+.+...+..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999985 56 46788999999999999999 9999998655 3445678899999999999999999
Q ss_pred HHHHhCC-CCCC-HHHHHHHHHHHHhcCC
Q 005969 630 KIITTMP-FPPN-ALIWRTFLEGCQRCRI 656 (667)
Q Consensus 630 ~~~~~m~-~~p~-~~~~~~l~~~~~~~~~ 656 (667)
+.+++.. ..|+ ...|..+..++...|+
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999984 6676 5667777777666554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=75.22 Aligned_cols=151 Identities=9% Similarity=0.031 Sum_probs=71.0
Q ss_pred HHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccC
Q 005969 410 IIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA-CSKLC 485 (667)
Q Consensus 410 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~ 485 (667)
.....+...|++++|...|++..+ .+...+..+...+...|++++|...+++.... .|+...+..+... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 344445555555555556666553 33455666666666777777777777666543 2333222211111 11111
Q ss_pred ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--CC---hhhHHHHHHHHHhCCChHHHHHH
Q 005969 486 NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RN---VITWTALISALGLNGFAQRALEK 560 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~~~~~~A~~~ 560 (667)
....+...++...+.. |.++..+..+...+...|++++|...|+++.+ |+ ...+..+...+...|+.++|...
T Consensus 89 ~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223444555554442 32344444555555555555555554444431 21 22344444444444444444444
Q ss_pred HHHH
Q 005969 561 FREM 564 (667)
Q Consensus 561 ~~~~ 564 (667)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.8e-06 Score=78.46 Aligned_cols=153 Identities=8% Similarity=-0.015 Sum_probs=78.4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CCcchHHHH-HHHHHHcCC
Q 005969 377 GSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PDIVSWNIV-IAACAHNGD 451 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l-i~~~~~~g~ 451 (667)
..+...+...|++++|...|++. ..|.+...+..+..++...|++++|...+++... |+....... ...+...++
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc
Confidence 35666777888888888877765 3444455555566666666666666666666553 322211111 112334445
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIF 530 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 530 (667)
.+.|...+++..+.. +.+...+..+...+...|+.++|...+..+.+......+...+..++..+...|+.++|...+
T Consensus 201 ~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 201 DTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp SCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 555555555554432 223444445555555555555555555555554321112344444444444444444444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.54 E-value=0.00011 Score=73.95 Aligned_cols=119 Identities=9% Similarity=-0.075 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc-cCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH-GGLVREGMELFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
.|...+..+.+.+..+.|..+|++. .. ...+...|......-.. .++++.|..+|+...+.++ -++..+...++.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Confidence 4445555555566677777777776 21 11122333221111111 2257777777777755532 223344556666
Q ss_pred HhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHhhhh
Q 005969 619 LVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 619 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 664 (667)
..+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..+.
T Consensus 364 e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666777777777777763 35666777766666667766665543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3.1e-06 Score=75.85 Aligned_cols=184 Identities=13% Similarity=0.074 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch-hHHhHH
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIY-PD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT-FVCNML 513 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 513 (667)
..+..+...+...|++++|+..|+++.+.... |. ...+..+..++.+.|+++.|...++.+.+.....+.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 44555667788899999999999998875321 11 3567778888899999999999999988875332121 234444
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HH----------------
Q 005969 514 IDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV-AL---------------- 576 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~---------------- 576 (667)
...+...+.. .+ ..|..+...+...|+.++|+..|+++.+. .|+.. .+
T Consensus 85 g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 85 GLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHH
Confidence 4444432110 00 01111222223344455555555555542 33321 11
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 577 -IAVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 577 -~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
..+...|.+.|++++|...|+++.+.+.-.| ....+..+..++.+.|+.++|.+.++.+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2345556677777777777777755521111 1145666777777777777777777765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.4e-07 Score=75.89 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=30.8
Q ss_pred HHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCC
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGL 588 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~ 588 (667)
+...|.+.|++++|.+.|++.. .| +...|..+..+|...|++++|+..|++..+. .|+ ...+..+...|.+.|+
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 3344444444444444444333 12 2333444444444444444444444444442 232 3334444444444444
Q ss_pred HHH
Q 005969 589 VRE 591 (667)
Q Consensus 589 ~~~ 591 (667)
+++
T Consensus 115 ~~~ 117 (150)
T 4ga2_A 115 TDG 117 (150)
T ss_dssp SSS
T ss_pred hHH
Confidence 433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.51 E-value=6.2e-06 Score=73.84 Aligned_cols=176 Identities=11% Similarity=-0.028 Sum_probs=118.7
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCCC--CCc----chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH----HHH
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLER--PDI----VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNY----TFV 475 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~ 475 (667)
..+......+...|++++|+..|+++.+ |+. ..+..+..+|.+.|++++|+..|++..+.. |+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 3445567788999999999999998873 443 457778889999999999999999998853 4322 344
Q ss_pred HHHHHHhc------------------cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC
Q 005969 476 SLLSACSK------------------LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN 537 (667)
Q Consensus 476 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 537 (667)
.+..++.. .|+.++|...++.+.+.. |.+.....+........+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~-------------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRL-------------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH--------------
Confidence 44444433 355666666666666553 21222222111110000000
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPDR----VALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
....-.+...|.+.|++++|+..|+++.+. .|+. ..+..+..+|.+.|++++|.+.++.+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 001124567788999999999999999985 4542 4688899999999999999999998843
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=7.3e-07 Score=73.89 Aligned_cols=140 Identities=10% Similarity=-0.049 Sum_probs=107.4
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCC
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTDR---NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGL 588 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~ 588 (667)
|...+...|++++|...++..... +...+-.+...|.+.|++++|++.|++..+. .| +..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 445566678899999999887753 3446677899999999999999999999985 56 57799999999999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHH-HHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005969 589 VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKI-ITTM-PFPP-NALIWRTFLEGCQRCRI 656 (667)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m-~~~p-~~~~~~~l~~~~~~~~~ 656 (667)
+++|...|++..+. -+-+...+..+..+|.+.|++++|.+. +++. .+.| ++.+|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999998655 334567899999999999999876665 5654 4455 45666666555655553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-06 Score=88.06 Aligned_cols=147 Identities=12% Similarity=-0.039 Sum_probs=92.0
Q ss_pred cCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 005969 418 TGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLH 494 (667)
Q Consensus 418 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 494 (667)
.|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4667777777777653 234566677777777788888888887777642 234566777777777777788887777
Q ss_pred HHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhC---CChHHHHHHHHHHHHc
Q 005969 495 GLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLN---GFAQRALEKFREMEFL 567 (667)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~ 567 (667)
++..+.. |.+...+..+...|...|++++|.+.+++.. .| +...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 7777764 4356677777777777777777777777665 23 455666777777777 7777777777777764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-06 Score=88.66 Aligned_cols=149 Identities=12% Similarity=-0.042 Sum_probs=113.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHH
Q 005969 449 NGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVK 528 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 528 (667)
.|++++|...+++..+.. +-+...+..+...+...|++++|.+.+++..+.. |.+...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478999999999987742 3356788889999999999999999999998875 5578899999999999999999999
Q ss_pred HHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcc---CCHHHHHHHHHHhHH
Q 005969 529 IFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHG---GLVREGMELFERMNR 601 (667)
Q Consensus 529 ~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 601 (667)
.+++.. .| +...+..+...|...|++++|.+.+++..+. .| +...+..+...+... |++++|.+.+++..+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999876 34 5678899999999999999999999999885 45 467888899999999 999999999999865
Q ss_pred h
Q 005969 602 S 602 (667)
Q Consensus 602 ~ 602 (667)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-05 Score=71.74 Aligned_cols=158 Identities=9% Similarity=-0.071 Sum_probs=91.7
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCCch----hHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHH
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIISSDT----FVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTAL 544 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l 544 (667)
+..+...|+++.|..+++...+.....|+. ..+..+...+...+++++|...++...+ ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455666777777777777766543222221 1233455555666677777777765541 22 1256667
Q ss_pred HHHHHhCCChHHHHHHHHHHHH----c-CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHh---hCCCCC-cchhHH
Q 005969 545 ISALGLNGFAQRALEKFREMEF----L-GFKPD-RVALIAVLTACRHGGLVREGMELFERMNRS---YGVEPE-MDHYHC 614 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~ 614 (667)
...|...|++++|++.++++.+ . +..+. ..+|..+...|.+.|++++|...+++...- .+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777663 1 21111 125666777777777777777777765432 111122 345666
Q ss_pred HHHHHhhcCC-hHHHHHHHHhC
Q 005969 615 VVDLLVRYGH-LKEAEKIITTM 635 (667)
Q Consensus 615 l~~~~~~~g~-~~~A~~~~~~m 635 (667)
+..++.+.|+ +++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 7777777773 47777666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00037 Score=70.18 Aligned_cols=185 Identities=10% Similarity=-0.033 Sum_probs=92.5
Q ss_pred hhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHHHHHhhcCChhHH-HHHHhcCC--C----------CCcc
Q 005969 372 YEYVLGSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANIIAGIYNRTGQYNET-VKLLSQLE--R----------PDIV 437 (667)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~--~----------~~~~ 437 (667)
++.++-..+..+.+.|+.++|.+++++. .. |........ |....+.++. ..+.+... . ....
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~---y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY---YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH---HHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH---HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence 3555666777778889999999999887 33 433322211 1111111111 11111110 0 0112
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSAC-SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
.|-..+....+.++.+.|..+|++. ... ..+...|......- ...++.+.|..+|+...+.- |.++..+...++.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 3444444444556667777777666 211 12223332211111 11235666777777666653 2234444445555
Q ss_pred HHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 565 (667)
....|+.+.|..+|+.+.+ ....|...+.--...|+.+.+..++++..
T Consensus 364 e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5666666666666666632 34455555555555566666666665554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-05 Score=69.12 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=64.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh
Q 005969 444 AACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI 523 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 523 (667)
..+...|++++|...|++. +.|+...+..+...+...|+++.|...++...+.. |.+...+..+...|...|++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcccH
Confidence 3344444444444444443 23344444444444444555555555554444442 22344444555555555555
Q ss_pred HHHHHHHHhcCC--C-----------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 005969 524 GSSVKIFNEMTD--R-----------------NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD 572 (667)
Q Consensus 524 ~~A~~~~~~~~~--~-----------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~ 572 (667)
++|...|+...+ | ....+..+..+|...|++++|.+.|++..+. .|+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 153 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSE 153 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCS
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Ccc
Confidence 555555544431 1 1256677777888888888888888888774 454
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-05 Score=74.76 Aligned_cols=161 Identities=10% Similarity=0.060 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDN-----YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD----TFV 509 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 509 (667)
+...+..+...|++++|.+.+.+..+....... ..+..+...+...|+.+.|...+++..+......+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677788888888888777664321111 12223344455666777777776666543211111 235
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcC-----CCC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCC-Hh
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMT-----DRN-----VITWTALISALGLNGFAQRALEKFREMEFLG----FKPD-RV 574 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g----~~p~-~~ 574 (667)
++.+...|...|++++|...+++.. .|+ ..++..+...|...|++++|++.+++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 5556666666666666666665543 111 1355555566666666666666666554321 1111 34
Q ss_pred HHHHHHHHHhccCCHHHH-HHHHHHh
Q 005969 575 ALIAVLTACRHGGLVREG-MELFERM 599 (667)
Q Consensus 575 ~~~~li~~~~~~g~~~~A-~~~~~~~ 599 (667)
+|..+..+|.+.|++++| ...+++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 555555566666666666 4545443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.29 E-value=8.5e-06 Score=68.77 Aligned_cols=91 Identities=9% Similarity=-0.014 Sum_probs=40.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHh
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGL 550 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~ 550 (667)
+..+...+...|+++.|...++...+.. |.+...+..+...+...|++++|...++... .| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3334444444555555555555544442 2234444444444444444444444444333 11 23334444444444
Q ss_pred CCChHHHHHHHHHHHH
Q 005969 551 NGFAQRALEKFREMEF 566 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~ 566 (667)
.|++++|...+++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=9.7e-06 Score=64.54 Aligned_cols=88 Identities=18% Similarity=0.065 Sum_probs=40.1
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhc
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRH 585 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~ 585 (667)
+......|.+.|++++|.+.|++.. .| +...|..+..+|...|++++|++.+++.++. .| +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHH
Confidence 3334444444444444444444433 12 3334444444444455555555555544442 22 23344444444555
Q ss_pred cCCHHHHHHHHHHh
Q 005969 586 GGLVREGMELFERM 599 (667)
Q Consensus 586 ~g~~~~A~~~~~~~ 599 (667)
.|++++|.+.|++.
T Consensus 94 ~~~~~~A~~~~~~a 107 (126)
T 4gco_A 94 MREWSKAQRAYEDA 107 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-05 Score=74.15 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=111.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhHHhH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARI-YPDNY----TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD----TFVCNM 512 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 512 (667)
.+..+...|++++|..++++..+... .|+.. .+..+...+...++.+.|...++.+.+.....++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 36677888999999999988876431 22321 2334566677778889999999988875333323 236888
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC------CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HhHHH
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTD------RN----VITWTALISALGLNGFAQRALEKFREMEFL----GFKPD-RVALI 577 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~------~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p~-~~~~~ 577 (667)
+...|...|++++|...|+.+.+ .+ ..++..+...|...|++++|++.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999888887762 11 236778888899999999999998887652 22222 55788
Q ss_pred HHHHHHhccCC-HHHHHHHHH
Q 005969 578 AVLTACRHGGL-VREGMELFE 597 (667)
Q Consensus 578 ~li~~~~~~g~-~~~A~~~~~ 597 (667)
.+..+|.+.|+ +++|.+.++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHH
Confidence 88888888884 588887765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-05 Score=73.72 Aligned_cols=163 Identities=9% Similarity=-0.066 Sum_probs=102.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch----hHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hh
Q 005969 473 TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT----FVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VI 539 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~ 539 (667)
.+...+..+...|+++.|.+.++...+.....++. ..+..+...+...|++++|...++...+ .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34455666777888888888887776653221111 2233455566677788888887776541 11 23
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCC-----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhh---CCCCC-c
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFL-GFKPD-----RVALIAVLTACRHGGLVREGMELFERMNRSY---GVEPE-M 609 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~ 609 (667)
+|+.+...|...|++++|++.+++..+. ...|+ ..++..+...|...|++++|...+++..... +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777778888888888888888877621 01222 1467777778888888888888888764331 11111 3
Q ss_pred chhHHHHHHHhhcCChHHH-HHHHHhC
Q 005969 610 DHYHCVVDLLVRYGHLKEA-EKIITTM 635 (667)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A-~~~~~~m 635 (667)
.+|..+..++.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5567777777888888887 5556543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.28 E-value=7e-06 Score=65.38 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVD 617 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 617 (667)
..+......|.+.|++++|++.|++..+. .| +...|..+..+|.+.|++++|+..+++..+. -+.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHH
Confidence 45677889999999999999999999985 45 5778999999999999999999999998655 3445678999999
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 005969 618 LLVRYGHLKEAEKIITTM-PFPPN-ALIWRTF 647 (667)
Q Consensus 618 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 647 (667)
++...|++++|.+.|++. .+.|+ ...+..|
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 999999999999999987 35565 4444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00032 Score=65.08 Aligned_cols=215 Identities=10% Similarity=0.028 Sum_probs=138.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCchhHhHh----hccCC-ccchhhHHHHHHHHHhCCCCCChhHHhhHHHHh----
Q 005969 15 AYSRCGYVEDALRMFLYMINRGFEPTQFTFGGL----LSCDS-LNPVEGAQLQASVLKNGLFCADAFVGTALLGLY---- 85 (667)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 85 (667)
........++|+.+++.++.. .|+..|.-.. +..-. ..++++...++.++..+ |-+..+|+.-..++
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHH
Confidence 334445557899999998874 6666543221 11111 37888888888888776 55666666555555
Q ss_pred hcc---CChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChH--HHHHHHHHHHHCCCcCChhhHHHHHHHhcccCc-
Q 005969 86 GRH---GCLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVE--DCMFLFCELVRSEVALTESSFVGVIHGLSNEQD- 156 (667)
Q Consensus 86 ~~~---g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~- 156 (667)
.+. +++++++.+++.+.+ .|..+|+.-...+.+.|.++ ++++.++++.+... -|...|+.-...+...+.
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGG
T ss_pred HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc
Confidence 444 677888888877754 45566776666777777777 88888888877553 355566655555555554
Q ss_pred -----hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhH-HHHhhccCC------CCCchhHHHHHHHHHccCChh
Q 005969 157 -----LEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWS-AEKMFKDVE------IRDVVSWNTIIGALAESENFG 224 (667)
Q Consensus 157 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~ 224 (667)
++++.+.++.++... +-|...|+.+-..+.+.|+..+ +..+.+++. .++...+..+...+.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 677777777777765 3466777777777777766433 333444432 234456666677777777777
Q ss_pred HHHHHHHHhHh
Q 005969 225 KALELYLRMSV 235 (667)
Q Consensus 225 ~a~~~~~~m~~ 235 (667)
+|+++++.+.+
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-05 Score=62.43 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
.+..+...+...|++++|.+.++++. . .+...+..+...+...|++++|+.+++++.+.. +.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 33334444444444444444444333 1 123344444444444555555555555544431 2233344444445555
Q ss_pred cCCHHHHHHHHHHh
Q 005969 586 GGLVREGMELFERM 599 (667)
Q Consensus 586 ~g~~~~A~~~~~~~ 599 (667)
.|++++|...++++
T Consensus 90 ~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 90 QGDYDEAIEYYQKA 103 (125)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHH
Confidence 55555555555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00062 Score=63.15 Aligned_cols=227 Identities=6% Similarity=-0.001 Sum_probs=150.4
Q ss_pred hhcCC-hhHHHHHHhcCCC--CC-cchHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcc-
Q 005969 416 NRTGQ-YNETVKLLSQLER--PD-IVSWNIVIAACAHNG--DYKEVLELFKYMRAARIYPDNYTFVSLLSAC----SKL- 484 (667)
Q Consensus 416 ~~~~~-~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~- 484 (667)
.+.|. .++|++.++.+.. |+ ...|+.--..+...| ++++++..++.+.... +-+..+++.--..+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 34444 4678888887764 32 334566566666677 8888888888888753 22233444333333 333
Q ss_pred --CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChH--HHHHHHHhcCC---CChhhHHHHHHHHHhCCC----
Q 005969 485 --CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIG--SSVKIFNEMTD---RNVITWTALISALGLNGF---- 553 (667)
Q Consensus 485 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---- 553 (667)
++++++..+++.+.+.. |.+..+|+.-...+.+.|+++ ++++.++.+.+ .|...|+.-...+...++
T Consensus 122 ~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 67888888888888775 446777777777777778777 88888888773 355667666666666665
Q ss_pred --hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHH-HHHHHHHhHHhh-CCCCCcchhHHHHHHHhhcCChHHHH
Q 005969 554 --AQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVRE-GMELFERMNRSY-GVEPEMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 554 --~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
++++++.++++.... +-|...|+.+-..+.+.|+..+ +..+..++.... .-+.++..+..+.+++.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 788888888888752 3356778777777777776444 556666653321 11335566778888888888888888
Q ss_pred HHHHhCC--CCCC-HHHHHH
Q 005969 630 KIITTMP--FPPN-ALIWRT 646 (667)
Q Consensus 630 ~~~~~m~--~~p~-~~~~~~ 646 (667)
++++.+. ..|- ...|+.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHH
Confidence 8888874 4443 444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-05 Score=62.16 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVD 617 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 617 (667)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..+++++... .+.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 4577888899999999999999999998862 345778899999999999999999999999655 3456678889999
Q ss_pred HHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 005969 618 LLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEGCQR 653 (667)
Q Consensus 618 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~ 653 (667)
.+...|++++|.+.++++. ..| +...+..+...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999999999873 334 45556555555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-05 Score=68.14 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=65.6
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHH-HHhCCCh--HH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISA-LGLNGFA--QR 556 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~-~~~~~~~--~~ 556 (667)
..|+++.|...++...+.. |.+...+..+...|...|++++|...|+...+ .+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455566666666555543 33455666666666666666666666665542 244455555555 5566666 67
Q ss_pred HHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 557 ALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 557 A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
|+..+++..+. .| +...+..+...|...|++++|...++++.
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77777766664 33 34556666666677777777777777664
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.5e-06 Score=71.91 Aligned_cols=152 Identities=8% Similarity=-0.044 Sum_probs=70.8
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh----CCCCCchhHHhHHHHHHHhcCC
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT----EIISSDTFVCNMLIDMYGKCGS 522 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ 522 (667)
...|++++|.+.++.+.. .......++..+...+...|+++.|...+++..+. +..+.....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345677777774444432 11123445666666666667777776666665542 1111123444555555555555
Q ss_pred hHHHHHHHHhcCC-----C-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--HhHHHHHHHHHhccC
Q 005969 523 IGSSVKIFNEMTD-----R-N----VITWTALISALGLNGFAQRALEKFREMEFLGF---KPD--RVALIAVLTACRHGG 587 (667)
Q Consensus 523 ~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~---~p~--~~~~~~li~~~~~~g 587 (667)
+++|...+++..+ + + ...+..+...+...|++++|...+++..+..- .+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 5555555554331 1 1 12344444555555555555555555442100 011 112344444455555
Q ss_pred CHHHHHHHHHHh
Q 005969 588 LVREGMELFERM 599 (667)
Q Consensus 588 ~~~~A~~~~~~~ 599 (667)
++++|...+++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.3e-05 Score=63.10 Aligned_cols=94 Identities=11% Similarity=-0.029 Sum_probs=51.0
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
+...+..+...+...|++++|...|+...+ | +...+..+...+...|++++|++.+++..+.. +.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344455555555555555555555555432 2 34455555555556666666666666655531 2234455555556
Q ss_pred HhccCCHHHHHHHHHHhH
Q 005969 583 CRHGGLVREGMELFERMN 600 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~ 600 (667)
+...|++++|...+++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 666666666666666553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8.8e-06 Score=67.03 Aligned_cols=95 Identities=9% Similarity=-0.024 Sum_probs=60.3
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLT 581 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~ 581 (667)
+...+..+...+...|++++|...|+... .| +...|..+..+|...|++++|+..|++.... .| +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHH
Confidence 44455556666666666666666666554 23 4556666666677777777777777776664 33 3456666666
Q ss_pred HHhccCCHHHHHHHHHHhHHh
Q 005969 582 ACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777766444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=65.47 Aligned_cols=93 Identities=15% Similarity=-0.021 Sum_probs=48.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLT 581 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~ 581 (667)
+...+..+...+.+.|++++|...|+... .| +...|..+..+|...|++++|++.|++..+. .| ++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 34444555555555555555555555544 23 3445555555555555555555555555553 33 2445555555
Q ss_pred HHhccCCHHHHHHHHHHhH
Q 005969 582 ACRHGGLVREGMELFERMN 600 (667)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~ 600 (667)
+|...|++++|...|++..
T Consensus 113 ~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-05 Score=63.32 Aligned_cols=114 Identities=8% Similarity=-0.057 Sum_probs=52.3
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR 584 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 584 (667)
..+..+...+...|++++|...++... .| +...+..+...+...|++++|++.+++..+.. +.+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 344444444444455555555444433 11 33344444555555555555555555555431 122344455555555
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCC
Q 005969 585 HGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGH 624 (667)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (667)
..|++++|...+++..+. .+.+...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 555555555555554332 12233344444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.8e-06 Score=71.14 Aligned_cols=150 Identities=6% Similarity=-0.061 Sum_probs=104.9
Q ss_pred hcCChhHHHH---HHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChh
Q 005969 417 RTGQYNETVK---LLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAA----RIYP-DNYTFVSLLSACSKLCNLA 488 (667)
Q Consensus 417 ~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~ 488 (667)
..|++++|.+ .+..........+..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666666 444433334566777888888889999999888887652 2222 2356777778888999999
Q ss_pred hHHHHHHHHHHhCCCC-----CchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CCh----hhHHHHHHHHHhCCCh
Q 005969 489 LGSSLHGLIKKTEIIS-----SDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RNV----ITWTALISALGLNGFA 554 (667)
Q Consensus 489 ~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~ 554 (667)
.|...+++..+..... .....+..+...+...|++++|...+++..+ .+. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 9999888776651111 1245677888889999999999998887652 222 2457788889999999
Q ss_pred HHHHHHHHHHHH
Q 005969 555 QRALEKFREMEF 566 (667)
Q Consensus 555 ~~A~~~~~~~~~ 566 (667)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.19 E-value=4.4e-05 Score=64.27 Aligned_cols=126 Identities=13% Similarity=0.003 Sum_probs=73.0
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 583 (667)
...+..+...+...|++++|...|+... . .+...+..+...+...|++++|++.+++..+.. +.+...+..+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3445556666666677777776666554 2 245566666666666777777777776666642 22455666666666
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCCcchh--HHHHHHHhhcCChHHHHHHHHhC
Q 005969 584 RHGGLVREGMELFERMNRSYGVEPEMDHY--HCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
...|++++|...+++.... .+.+...+ ..++..+.+.|++++|.+.+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6677777777777666443 12222233 22333355566666666665543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-05 Score=62.61 Aligned_cols=118 Identities=12% Similarity=-0.089 Sum_probs=97.5
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
+...+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 34567778889999999999999999998852 336778899999999999999999999998655 344567888999
Q ss_pred HHHhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCh
Q 005969 617 DLLVRYGHLKEAEKIITTMP-FP-PNALIWRTFLEGCQRCRIA 657 (667)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l~~~~~~~~~~ 657 (667)
.++.+.|++++|.+.+++.. .. .+...+..+...+...|+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999873 33 4677888888888877764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=66.26 Aligned_cols=91 Identities=7% Similarity=-0.099 Sum_probs=41.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHh
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGL 550 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~ 550 (667)
+..+...+.+.|++++|...|+.+.+.. |.++..|..+..+|...|++++|...|++.. .| +...|..+..+|..
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 3333444444444444444444444443 2244444444444444444444444444443 22 23344444444444
Q ss_pred CCChHHHHHHHHHHHH
Q 005969 551 NGFAQRALEKFREMEF 566 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~ 566 (667)
.|++++|+..|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444445444444444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.3e-05 Score=63.05 Aligned_cols=115 Identities=8% Similarity=-0.087 Sum_probs=94.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCV 615 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 615 (667)
+...+..+...+...|++++|++.+++..+. .| +...+..+...+...|++++|...+++..+. .+.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 4567888899999999999999999999885 44 6778999999999999999999999998655 34466788999
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 005969 616 VDLLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEGCQRCR 655 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~~ 655 (667)
..++.+.|++++|.+.+++.. ..| +...+..+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999873 344 3566666666666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.6e-06 Score=77.58 Aligned_cols=181 Identities=9% Similarity=-0.091 Sum_probs=91.7
Q ss_pred HHHhhcCChhHHHHHHhcCC--C-CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhh
Q 005969 413 GIYNRTGQYNETVKLLSQLE--R-PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLAL 489 (667)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 489 (667)
..+...|++++|+..|++.. . .+...|..+...|.+.|++++|...+++..+.. +-+...+..+..++...|++++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDE 90 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 33334444444444444433 1 245556666777777777777777777776542 2345566667777777777777
Q ss_pred HHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 005969 490 GSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGF 569 (667)
Q Consensus 490 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~ 569 (667)
|...++...+.... +...+...+....+..+.......-......+......+ ..+ ..|+.++|++.+++..+.
T Consensus 91 A~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~al~~-- 164 (281)
T 2c2l_A 91 AIANLQRAYSLAKE--QRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYL-TRL-IAAERERELEECQRNHEG-- 164 (281)
T ss_dssp HHHHHHHHHHHHHH--TTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGGGTT--
T ss_pred HHHHHHHHHHhCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhhhcc--
Confidence 77777776655311 111111122221111111111111112222233333323 222 256777777777776653
Q ss_pred CCCHhH-HHHHHHHHhcc-CCHHHHHHHHHHhH
Q 005969 570 KPDRVA-LIAVLTACRHG-GLVREGMELFERMN 600 (667)
Q Consensus 570 ~p~~~~-~~~li~~~~~~-g~~~~A~~~~~~~~ 600 (667)
.|+... ...+...+.+. +.+++|.++|....
T Consensus 165 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 165 HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555432 23333333433 56777888887664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.2e-05 Score=67.10 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=93.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH-HHhcCCh--
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM-YGKCGSI-- 523 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 523 (667)
...|++++|...+++..+.. +.+...+..+...+...|+++.|...++.+.+.. |.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888888888877753 4466788888888888999999999998888775 4467777788888 7788888
Q ss_pred HHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 005969 524 GSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV 574 (667)
Q Consensus 524 ~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~ 574 (667)
++|...++... .| +...+..+...|...|++++|...|++..+. .|+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCc
Confidence 99999988776 34 4567888888999999999999999999885 55443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.1e-05 Score=67.72 Aligned_cols=136 Identities=8% Similarity=-0.028 Sum_probs=89.9
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhc
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD--RVALIAVLTACRH 585 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~ 585 (667)
.-.+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 3445667777888888888888776 3433355555567778888888888887554421 111 2356677778888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCC--cchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 005969 586 GGLVREGMELFERMNRSYGVEPE--MDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTF 647 (667)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 647 (667)
.|++++|+..|++.. .....|. .........++.+.|+.++|..+|+++. ..|+...+..|
T Consensus 184 LG~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 888888888888774 3122143 3355667777788888888888888873 45664444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=6.3e-05 Score=61.80 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=82.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCV 615 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 615 (667)
+...+..+...+...|++++|+..|++.... .| +...|..+..+|...|++++|...+++.... -+.++..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHH
Confidence 3456777888999999999999999999985 45 6778889999999999999999999998655 34566788999
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 005969 616 VDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m 635 (667)
..++...|++++|.+.|++.
T Consensus 96 g~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999887
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-05 Score=74.16 Aligned_cols=86 Identities=9% Similarity=-0.134 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVD 617 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 617 (667)
..|..+..+|.+.|++++|+..+++..+. .| +...|..+..+|...|++++|...|++..+. .+.+...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 56666666677777777777777776664 33 4556666666777777777777777766433 2333455666666
Q ss_pred HHhhcCChHHH
Q 005969 618 LLVRYGHLKEA 628 (667)
Q Consensus 618 ~~~~~g~~~~A 628 (667)
++.+.|+.++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666666
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=98.07 E-value=7.7e-07 Score=84.19 Aligned_cols=421 Identities=11% Similarity=0.075 Sum_probs=266.8
Q ss_pred CChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhc
Q 005969 73 ADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLS 152 (667)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 152 (667)
..+.+|+.|..++.+.|++.+|++.|= +..|...|..+|.+..+.|.+++.+..+...++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 456678999999999999999888663 345777899999999999999999999887766533 3344457889999
Q ss_pred ccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC------------------------CCch
Q 005969 153 NEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI------------------------RDVV 208 (667)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 208 (667)
+.++..+.++++. .|+..-...+.+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 8888765544433 45665667788888888988888888877641 3677
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 005969 209 SWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYA 288 (667)
Q Consensus 209 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (667)
+|..+-.+|...+.+.-|.-.--.+.- .|| ....++.-|-..|.+++-..+++.-... -......|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 899999999999988877655444332 222 2334566678888888888888776521 2345667888888888
Q ss_pred hcCChHHHHHHHhccCC-----------CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhh
Q 005969 289 KCDNLEGAHLCFSEISN-----------KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQ 356 (667)
Q Consensus 289 ~~g~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 356 (667)
+- +.++..+.++..-. .....|.-++-.|.+..+++ |....-+ . .|+...-..+.....+..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~---h--~~~Aw~h~~Fkdii~KVa 348 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVA 348 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTS---C--HHHHCCGGGGTTTGGGCS
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHh---C--ChhhccHHHHHHHHHHcc
Confidence 75 45555555554332 23456777777777777777 5432211 0 001111111111122222
Q ss_pred hhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCC-------------CcchhHHHHHHHhhcCChhH
Q 005969 357 LLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPR-------------AVVPANIIAGIYNRTGQYNE 423 (667)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~ 423 (667)
..++.-.....-+.-.|..++-|+..+...=+...+.++++..+.-| ....-.++-+.|....+++.
T Consensus 349 N~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 349 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp CSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 23444444444455556666677777766666677777776663222 22223456667777777776
Q ss_pred HHHHHhcCCCCCc------------chHH-HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhH
Q 005969 424 TVKLLSQLERPDI------------VSWN-IVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALG 490 (667)
Q Consensus 424 a~~~~~~~~~~~~------------~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 490 (667)
-..-.+....-|. .-|. +-...|.+.+++.+++.+.++ ...|.-.|......++.+.+
T Consensus 429 LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~ela 499 (624)
T 3lvg_A 429 LRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELA 499 (624)
T ss_dssp HHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHH
T ss_pred HHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHH
Confidence 5554444332222 2222 223345556666666554322 12233345556778888888
Q ss_pred HHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 005969 491 SSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 529 (667)
.++++...+.| +...|.+.+-.|...=+++-+.++
T Consensus 500 eeLL~yFv~~g----~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 500 EELLQWFLQEE----KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHHHC----STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHcC----chHHHHHHHHHHhhccChHHHHHH
Confidence 88988888877 667788887777777778877766
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.5e-05 Score=61.37 Aligned_cols=103 Identities=9% Similarity=-0.064 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhC-CCCC----cchhH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYG-VEPE----MDHYH 613 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~ 613 (667)
.+..+...+.+.|++++|++.|++.++. .| +...|..+..+|...|++++|++.+++..+... ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3445555566666666666666666553 33 344555566666666666666666665533210 1111 12445
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCCHHHH
Q 005969 614 CVVDLLVRYGHLKEAEKIITTM-PFPPNALIW 644 (667)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 644 (667)
.+..++...|++++|.+.|++. ...|++.+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 5555566666666666666554 234444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.05 E-value=7e-06 Score=76.29 Aligned_cols=188 Identities=5% Similarity=-0.075 Sum_probs=124.8
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
...+..+...+...|++++|+..|++..+.. +-+...+..+..++.+.|++++|...++...+.. |.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3456677788889999999999999988753 3367788888889999999999999999888764 557888899999
Q ss_pred HHHhcCChHHHHHHHHhcCC--CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHH
Q 005969 516 MYGKCGSIGSSVKIFNEMTD--RN-VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 592 (667)
+|...|++++|...|+...+ |+ ...+...+....+ ..++.. +......-...+......+.. + ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 99999999999999987763 21 1111112222111 111222 222333334445444444433 2 26888899
Q ss_pred HHHHHHhHHhhCCCCC-cchhHHHHHHHhhc-CChHHHHHHHHhC
Q 005969 593 MELFERMNRSYGVEPE-MDHYHCVVDLLVRY-GHLKEAEKIITTM 635 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m 635 (667)
.+.++... . ..|+ ......+...+.+. +.+++|.++|.+.
T Consensus 155 ~~~~~~al-~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 155 LEECQRNH-E--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HTTTSGGG-T--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhh-c--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888663 2 3444 33444455555554 6688899999766
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.5e-05 Score=60.70 Aligned_cols=92 Identities=9% Similarity=-0.111 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHh
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLV 620 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 620 (667)
|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+. .+.+...+..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 3344444555555555555555554431 123444555555555555555555555554332 1223344455555555
Q ss_pred hcCChHHHHHHHHhC
Q 005969 621 RYGHLKEAEKIITTM 635 (667)
Q Consensus 621 ~~g~~~~A~~~~~~m 635 (667)
..|++++|.+.+++.
T Consensus 84 ~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 84 AVKEYASALETLDAA 98 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 555555555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.1e-05 Score=68.64 Aligned_cols=124 Identities=14% Similarity=0.010 Sum_probs=89.7
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCC-C----hhhHHHHHHHHHh
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR-N----VITWTALISALGL 550 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~li~~~~~ 550 (667)
.+...+...|++++|.++++.+...+ |.+. ....+...+.+.+++++|+..|+...+. + ...+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 34556677788888888887766544 3123 5566666888889999999998876642 2 2356777888899
Q ss_pred CCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 551 NGFAQRALEKFREMEFLGFKPD--RVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
.|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999998875433254 235566777788899999999999988544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.01 E-value=9.8e-05 Score=73.79 Aligned_cols=154 Identities=9% Similarity=-0.084 Sum_probs=70.2
Q ss_pred HHHHhhcCChhHHHHHHhcCCC--CCc------------------chHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCC
Q 005969 412 AGIYNRTGQYNETVKLLSQLER--PDI------------------VSWNIVIAACAHNGDYKEVLELFKYMRAAR-IYPD 470 (667)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~--~~~------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 470 (667)
...+.+.|++++|++.|..+.+ ++. ..+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445566666666666655441 100 024455556666666666666665544321 1111
Q ss_pred HH----HHHHHHHHHhccCChhhHHHHHHHHHHh----CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-------
Q 005969 471 NY----TFVSLLSACSKLCNLALGSSLHGLIKKT----EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD------- 535 (667)
Q Consensus 471 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------- 535 (667)
.. +.+.+-..+...|+.+.+..+++..... +..+....++..+...|...|++++|..++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1112222233345555555555544322 11111233444555555555555555555544320
Q ss_pred -C-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 536 -R-NVITWTALISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 536 -~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 565 (667)
+ ....+..++..|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 0 11244444555555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=4e-05 Score=61.07 Aligned_cols=102 Identities=10% Similarity=0.003 Sum_probs=61.0
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC----HhHHHH
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLG--FKPD----RVALIA 578 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--~~p~----~~~~~~ 578 (667)
..+..+...+.+.|++++|+..|++.. .| +...|..+..+|...|++++|++.+++.++.. ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344556666666666666666666554 23 44566666677777777777777777665521 0111 125566
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchh
Q 005969 579 VLTACRHGGLVREGMELFERMNRSYGVEPEMDHY 612 (667)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (667)
+..++...|++++|++.|++.... .|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE---FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHH
Confidence 666677777777777777766433 3454443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=9.3e-05 Score=57.77 Aligned_cols=93 Identities=14% Similarity=-0.039 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLL 619 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 619 (667)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34445555555566666666666655531 223445555555555666666666666655333 222344555555666
Q ss_pred hhcCChHHHHHHHHhC
Q 005969 620 VRYGHLKEAEKIITTM 635 (667)
Q Consensus 620 ~~~g~~~~A~~~~~~m 635 (667)
...|++++|.+.+++.
T Consensus 83 ~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 6666666666666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.00 E-value=7.1e-05 Score=61.09 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=41.0
Q ss_pred hHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcc
Q 005969 511 NMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHG 586 (667)
Q Consensus 511 ~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~ 586 (667)
..+...+.+.|++++|...|+... .| +...|..+..+|...|++++|+..|++..+. .| ++..+..+..+|...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHc
Confidence 333444444444444444444433 22 3334444445555555555555555555543 22 233444455555555
Q ss_pred CCHHHHHHHHHHh
Q 005969 587 GLVREGMELFERM 599 (667)
Q Consensus 587 g~~~~A~~~~~~~ 599 (667)
|++++|...|++.
T Consensus 100 g~~~~A~~~~~~a 112 (142)
T 2xcb_A 100 GDLDGAESGFYSA 112 (142)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.00 E-value=9.5e-05 Score=57.08 Aligned_cols=95 Identities=14% Similarity=-0.004 Sum_probs=56.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CHhHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKP--DRVALIAVL 580 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p--~~~~~~~li 580 (667)
+...+..+...+...|++++|...++... ..+...+..+...+...|++++|++.+++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 44455555566666666666666665544 1234455566666666666666666666666642 22 345566666
Q ss_pred HHHhcc-CCHHHHHHHHHHhHH
Q 005969 581 TACRHG-GLVREGMELFERMNR 601 (667)
Q Consensus 581 ~~~~~~-g~~~~A~~~~~~~~~ 601 (667)
.++... |++++|.+.+++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 666666 666666666666643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.99 E-value=8.2e-05 Score=62.52 Aligned_cols=94 Identities=12% Similarity=0.010 Sum_probs=50.7
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTA 582 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~ 582 (667)
...+..+...+...|++++|...|++.. .| +...|..+..+|...|++++|+..+++..+. .| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444445555555555555555555444 12 3445555555555666666666666665553 23 34455555556
Q ss_pred HhccCCHHHHHHHHHHhHHh
Q 005969 583 CRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~ 602 (667)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666655433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00065 Score=67.71 Aligned_cols=256 Identities=8% Similarity=-0.064 Sum_probs=162.3
Q ss_pred HHHHHHhhCCHHHHHHHHHhc--CCCCCc-----------------chhHHHHHHHhhcCChhHHHHHHhcCCC-----C
Q 005969 379 LMTSYAKSGLISDALAFVTAL--NIPRAV-----------------VPANIIAGIYNRTGQYNETVKLLSQLER-----P 434 (667)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~--~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~ 434 (667)
-...+.+.|++++|.+.|..+ ..+... ..+..+...|...|++++|.+.+....+ +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 356678899999999999887 111111 1256788899999999999999988763 1
Q ss_pred Cc----chHHHHHHHHHHcCChhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCC---
Q 005969 435 DI----VSWNIVIAACAHNGDYKEVLELFKYMRA----ARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEI--- 502 (667)
Q Consensus 435 ~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 502 (667)
+. .+.+.+-..+...|+++.|..++.+... .+..+. ..++..+...+...|+++.|..+++.+...-.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 1122233333456899999999988653 333443 45778889999999999999999998765421
Q ss_pred -CCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHH----c
Q 005969 503 -ISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN-----VITWTALISALGLNGFAQRALEKFREMEF----L 567 (667)
Q Consensus 503 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~ 567 (667)
.+.....+..++..|...|++++|..+++.... ++ ...+..+...+...|++++|...|.+..+ .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~ 249 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNL 249 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 122356788899999999999999999987652 22 23566667778888999999998887764 2
Q ss_pred CCCCCHhHHH-H---HHHHHhccCCHHHHHHHHHHhH-HhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 568 GFKPDRVALI-A---VLTACRHGGLVREGMELFERMN-RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 568 g~~p~~~~~~-~---li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+......... . .+-+....+..+.....+..-. ......|....+..+..++. .+++....+.+...
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~ 321 (434)
T 4b4t_Q 250 TTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYN-NRSLLDFNTALKQY 321 (434)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence 2222222111 1 1111112222222223322110 11122333455666666665 45667766666665
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00013 Score=59.04 Aligned_cols=94 Identities=9% Similarity=-0.095 Sum_probs=54.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
+...+..+...+...|++++|...|+... .| +...|..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 45556666666666666666666666544 22 34455566666666666666666666666532 2234455566666
Q ss_pred HhccCCHHHHHHHHHHhH
Q 005969 583 CRHGGLVREGMELFERMN 600 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~ 600 (667)
|...|++++|...+++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 666666666666666553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.002 Score=60.36 Aligned_cols=222 Identities=10% Similarity=-0.017 Sum_probs=143.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc--c-CCc-cchhhHHHHHHHHHhCCCCCChhHHhhHHHH
Q 005969 9 FNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS--C-DSL-NPVEGAQLQASVLKNGLFCADAFVGTALLGL 84 (667)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (667)
++.+-......+..++|+++++.++.. .|+..|.-..-. + .-+ .++++...++.++..+ +-+..+|+.-...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 445445555667778899999999985 666654322222 1 122 5889999999999877 7777888887777
Q ss_pred hhcc-C-ChhHHHHhhccCCCC---CchhHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCcCChhhHHHHHHHh
Q 005969 85 YGRH-G-CLDEVVSVFEDMPRK---SLVTWNSIVSIFGKHGFVE--------DCMFLFCELVRSEVALTESSFVGVIHGL 151 (667)
Q Consensus 85 ~~~~-g-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~ 151 (667)
+.+. + ++++++++++.+.+. |..+|+.-...+.+.|.++ ++++.++++.+... -|...|+.....+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 7766 6 888999999888763 4556665555555555555 88889998887653 3666777776666
Q ss_pred cccCc-------hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCh--------------------hHHHHhhccCCC
Q 005969 152 SNEQD-------LEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGI--------------------WSAEKMFKDVEI 204 (667)
Q Consensus 152 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~ 204 (667)
.+.+. ++++.+..+..+... +-|...|+-+-..+.+.|+. ....+....+..
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 66654 577778887777765 44677777766666666553 222222222221
Q ss_pred ---------CCchhHHHHHHHHHccCChhHHHHHHHHhHhC
Q 005969 205 ---------RDVVSWNTIIGALAESENFGKALELYLRMSVD 236 (667)
Q Consensus 205 ---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 236 (667)
++......+...|...|+.++|.++++.+.+.
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 23344555666666666667777776666543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.96 E-value=8.4e-05 Score=60.61 Aligned_cols=94 Identities=15% Similarity=0.056 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
...+..+...+...|++++|+..|++.... .| +...|..+..+|...|++++|...+++.... .+.++..+..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHH
Confidence 345666778889999999999999999985 45 5778889999999999999999999999655 345667888999
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 005969 617 DLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~m 635 (667)
.++...|++++|.+.+++.
T Consensus 94 ~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999887
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0001 Score=61.93 Aligned_cols=113 Identities=10% Similarity=-0.053 Sum_probs=90.5
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCV 615 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 615 (667)
+...+..+...+...|++++|++.|++..+. .| +...|..+..+|...|++++|+..+++..+. .+.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3456778889999999999999999999985 45 6778999999999999999999999999655 34457788999
Q ss_pred HHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHh
Q 005969 616 VDLLVRYGHLKEAEKIITTMP----FPPNALIWRTFLEGCQR 653 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~l~~~~~~ 653 (667)
..++.+.|++++|.+.|++.. ..++......+..+..+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 127 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999872 33443344444444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00014 Score=69.48 Aligned_cols=93 Identities=14% Similarity=-0.018 Sum_probs=71.8
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTA 582 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~ 582 (667)
...+..+...|.+.|++++|...++... .| +...|..+..+|...|++++|+..|++..+. .| +...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 4677777788888888888888887766 23 5667888888888899999999999998885 55 46678888888
Q ss_pred HhccCCHHHH-HHHHHHhHH
Q 005969 583 CRHGGLVREG-MELFERMNR 601 (667)
Q Consensus 583 ~~~~g~~~~A-~~~~~~~~~ 601 (667)
+...|++++| ...++.|..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 8888888888 556666643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=58.50 Aligned_cols=94 Identities=15% Similarity=0.007 Sum_probs=62.5
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTA 582 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~ 582 (667)
...+..+...+.+.|++++|...|++.. .| +...|..+..++...|++++|+..+++..+. .| +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 3445555666666677777777666654 23 4556677777777777777777777777764 34 35567777777
Q ss_pred HhccCCHHHHHHHHHHhHHh
Q 005969 583 CRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~ 602 (667)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777776433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.8e-05 Score=58.84 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=18.2
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMIN 34 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 34 (667)
+.+...|..+...+.+.|++++|+..|++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 34 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ 34 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455555555556666666666666655554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.92 E-value=4.5e-05 Score=61.05 Aligned_cols=106 Identities=10% Similarity=0.000 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC-CCC----cchhHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGV-EPE----MDHYHCV 615 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~~l 615 (667)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++......- .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444555555555555555554431 223444455555555555555555555554332110 111 3344455
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 005969 616 VDLLVRYGHLKEAEKIITTM-PFPPNALIWRTF 647 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 647 (667)
..++.+.|++++|.+.+++. ...|+...+..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 118 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555555555544 133444433333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=69.40 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=76.9
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-C----------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-N----------------VITWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----------------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
...+..+...+...|++++|...|++..+ | + ...|..+..+|...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34445555556666666666666665441 1 1 256677777778888888888888887775
Q ss_pred CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHH
Q 005969 568 GFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 568 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
. +.+...+..+..+|...|++++|...|++.... .+.+...+..+..++...|+.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234567777778888888888888888877444 2334456666666666666665555
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00017 Score=56.19 Aligned_cols=93 Identities=15% Similarity=0.014 Sum_probs=60.1
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 583 (667)
...+..+...+...|++++|...++... .| +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3445555666666666666666666554 22 45566666667777777777777777776642 22455667777777
Q ss_pred hccCCHHHHHHHHHHhH
Q 005969 584 RHGGLVREGMELFERMN 600 (667)
Q Consensus 584 ~~~g~~~~A~~~~~~~~ 600 (667)
...|++++|...+++..
T Consensus 83 ~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 77777777777777663
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=2.4e-05 Score=68.39 Aligned_cols=144 Identities=10% Similarity=0.046 Sum_probs=102.3
Q ss_pred HHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CH----------------
Q 005969 514 IDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DR---------------- 573 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~---------------- 573 (667)
+......|+++++.+.|+.-.+ .....+..+...+...|++++|+..|++..+. .| +.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHH
Confidence 3444455666666666654332 13456777888999999999999999999984 23 22
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005969 574 VALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEGC 651 (667)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~ 651 (667)
..+..+..+|...|++++|...+++.... .+.+...+..+..++...|++++|.+.|++.. ..| +...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 68888999999999999999999999655 34566788999999999999999999999873 344 567777777777
Q ss_pred HhcCChhHHh
Q 005969 652 QRCRIAKYDT 661 (667)
Q Consensus 652 ~~~~~~~~a~ 661 (667)
...++.+.+.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 7666665554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00021 Score=58.58 Aligned_cols=94 Identities=12% Similarity=-0.083 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (667)
...+..+...+...|++++|++.|++..+. .|+ ...+..+..+|...|++++|...+++.... .+.+...+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence 334445555555555555555555555552 343 344555555555555566655555555333 122334455
Q ss_pred HHHHHHhhcCChHHHHHHHHhC
Q 005969 614 CVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+..++...|++++|.+.+++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555556666665555554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.84 E-value=5.9e-05 Score=60.33 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=51.2
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCC----HhHHHHH
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFAQRALEKFREMEFLGF--KPD----RVALIAV 579 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~--~p~----~~~~~~l 579 (667)
.+..+...+...|++++|...|+... . .+...+..+...+...|++++|...+++..+... .++ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 44445555555555555555555443 1 2344555555566666666666666666555310 111 4456666
Q ss_pred HHHHhccCCHHHHHHHHHHhHH
Q 005969 580 LTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~~ 601 (667)
..++...|++++|.+.+++...
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 6666666777777777666643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00035 Score=57.23 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=69.1
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC--CCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN----VITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIA 578 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ 578 (667)
+...+..+...+...|++++|...|++.. .|+ ...|..+...|...|++++|+..+++..+. .| +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHH
Confidence 45566666777777777777777777665 344 456777777788888888888888887774 34 4567777
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHh
Q 005969 579 VLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+..++...|++++|...+++....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 788888888888888888877543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00023 Score=57.40 Aligned_cols=96 Identities=6% Similarity=-0.145 Sum_probs=59.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 44556666666666777777777776666642 223556666666666677777777776666443 233445666666
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 005969 617 DLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~m 635 (667)
.++...|++++|.+.+++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 6666677777776666655
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0084 Score=56.25 Aligned_cols=208 Identities=12% Similarity=0.007 Sum_probs=98.7
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc-C-ChHH
Q 005969 450 GDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLC-NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC-G-SIGS 525 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 525 (667)
+..++|+++++++... .|+ ...++.--..+...+ .+++++.+++.+...+ |.+..+|+.-...+... + ++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3345566666666553 233 233444333344444 3666666666666553 33455555544444444 4 5566
Q ss_pred HHHHHHhcCCC---ChhhHHHHHHHHHhCCChH--------HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC------
Q 005969 526 SVKIFNEMTDR---NVITWTALISALGLNGFAQ--------RALEKFREMEFLGFKPDRVALIAVLTACRHGGL------ 588 (667)
Q Consensus 526 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~------ 588 (667)
++++++.+.+. |...|+--...+.+.|..+ ++++.++++.+.. .-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 66666665532 3334443333333333333 5666666666542 2245555555555555554
Q ss_pred -HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCCh--------------------HHHHHHHHhCC-C-------CC
Q 005969 589 -VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHL--------------------KEAEKIITTMP-F-------PP 639 (667)
Q Consensus 589 -~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~m~-~-------~p 639 (667)
++++++.+++++.. .+-|...|+.+-..+.+.|+. .+..++..++. . .+
T Consensus 223 ~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 45566666555433 233334444444444444432 22333333331 1 24
Q ss_pred CHHHHHHHHHHHHhcCChhHHhhhh
Q 005969 640 NALIWRTFLEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 640 ~~~~~~~l~~~~~~~~~~~~a~~~~ 664 (667)
+...+..|...|...|+.+.|..+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5555666666666666555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=61.44 Aligned_cols=95 Identities=9% Similarity=0.011 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh---CCC-CCcc
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLG----FKP-DRVALIAVLTACRHGGLVREGMELFERMNRSY---GVE-PEMD 610 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~~ 610 (667)
.+..+...+...|++++|.+.+++..+.. -.+ ...++..+...+...|++++|...+++..... +.+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44445555555555555555555544310 000 02345555555666666666666665553221 110 0123
Q ss_pred hhHHHHHHHhhcCChHHHHHHHHh
Q 005969 611 HYHCVVDLLVRYGHLKEAEKIITT 634 (667)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~ 634 (667)
.+..+...+...|++++|.+.+++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 455555666666666666665554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00023 Score=56.72 Aligned_cols=86 Identities=14% Similarity=-0.021 Sum_probs=37.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC---cchhHHHHHH
Q 005969 546 SALGLNGFAQRALEKFREMEFLGFKPDR----VALIAVLTACRHGGLVREGMELFERMNRSYGVEPE---MDHYHCVVDL 618 (667)
Q Consensus 546 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~ 618 (667)
..+...|++++|...|++..+. .|+. ..+..+..++...|++++|...++++... .+.+ ...+..+..+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHH
Confidence 3444445555555555554442 2221 23444444444555555555555544332 1111 2334444444
Q ss_pred HhhcCChHHHHHHHHhC
Q 005969 619 LVRYGHLKEAEKIITTM 635 (667)
Q Consensus 619 ~~~~g~~~~A~~~~~~m 635 (667)
+.+.|++++|.+.+++.
T Consensus 86 ~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 55555555555554444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0002 Score=56.27 Aligned_cols=88 Identities=6% Similarity=-0.151 Sum_probs=39.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
+...+.+.|++++|+..+++..+. .| +...|..+..++...|++++|...+++..+. -+.+...+..+..++.+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 334444445555555555554442 23 2334444444444555555555555544322 112233444444445555
Q ss_pred CChHHHHHHHHhC
Q 005969 623 GHLKEAEKIITTM 635 (667)
Q Consensus 623 g~~~~A~~~~~~m 635 (667)
|++++|.+.+++.
T Consensus 99 g~~~~A~~~~~~a 111 (121)
T 1hxi_A 99 HNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5555555544443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00055 Score=54.45 Aligned_cols=88 Identities=15% Similarity=0.022 Sum_probs=58.0
Q ss_pred HHHHHHhcCChHHHHHHHHhcC--CCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHH
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMT--DRNV----ITWTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIAVLTA 582 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~--~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~ 582 (667)
+...+...|++++|...|+.+. .|+. ..+..+..++...|++++|+..+++..+. .|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHH
Confidence 4455556666666666666554 2322 25556667777777777787777777764 343 4456677777
Q ss_pred HhccCCHHHHHHHHHHhHHh
Q 005969 583 CRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~ 602 (667)
+...|++++|...++++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77788888888888777554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.67 E-value=5.3e-05 Score=59.33 Aligned_cols=82 Identities=10% Similarity=0.127 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHcCC-CC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHH
Q 005969 552 GFAQRALEKFREMEFLGF-KP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
|++++|+..|++..+.+. .| +...+..+..+|...|++++|...+++..+. .+-+...+..+..++.+.|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 344444444444444210 12 1224444444444444555554444444322 1222334444444444445555444
Q ss_pred HHHHhC
Q 005969 630 KIITTM 635 (667)
Q Consensus 630 ~~~~~m 635 (667)
+.+++.
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00016 Score=68.84 Aligned_cols=140 Identities=13% Similarity=0.048 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhc
Q 005969 175 ELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAG 254 (667)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 254 (667)
.+.+|..|..+....|.+.+|.+.|-+. .|...|..+|....+.|.+++-+..+...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4567788888888888888877766554 466778889999999999999999887666553333 344578888888
Q ss_pred cCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC------------------------CCccc
Q 005969 255 LQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN------------------------KNIVS 310 (667)
Q Consensus 255 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~ 310 (667)
.+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+.+ .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888776554443 45666667777888888888888888776653 35667
Q ss_pred HHHHHHHHhcCCChH
Q 005969 311 WNALILGYASKSSPT 325 (667)
Q Consensus 311 ~~~li~~~~~~~~~~ 325 (667)
|-.+-.+|...+.+.
T Consensus 202 WKeV~~ACvd~~Efr 216 (624)
T 3lvg_A 202 WKEVCFACVDGKEFR 216 (624)
T ss_dssp HHHHTHHHHHSCTTT
T ss_pred HHHHHHHHhCchHHH
Confidence 777777777777665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00019 Score=59.85 Aligned_cols=137 Identities=11% Similarity=-0.033 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhH
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIY-PD----NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNM 512 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 512 (667)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++...+.....++..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---- 86 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA---- 86 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH----
Confidence 3445555666666666666666665432100 11 12344444445555555555555554433211000000
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHhccC
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFL----GFKPD-RVALIAVLTACRHGG 587 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p~-~~~~~~li~~~~~~g 587 (667)
.....+..+...+...|++++|.+.+++..+. +..+. ..++..+...+...|
T Consensus 87 -----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 87 -----------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp -----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 01234455566666677777777766665542 11111 346677777788888
Q ss_pred CHHHHHHHHHHhHH
Q 005969 588 LVREGMELFERMNR 601 (667)
Q Consensus 588 ~~~~A~~~~~~~~~ 601 (667)
++++|.+.+++..+
T Consensus 144 ~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 144 NHDQAMHFAEKHLE 157 (164)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877644
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00035 Score=70.24 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=76.3
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChH
Q 005969 479 SACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQ 555 (667)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~ 555 (667)
..+.+.|++++|.+.+++..+.. |.+...+..+...|.+.|++++|.+.+++.. .| +...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34566778888888888777764 4457777777777888888888877777665 23 4556777777777778888
Q ss_pred HHHHHHHHHHHcCCCCC-HhHHHHHHHH--HhccCCHHHHHHHHH
Q 005969 556 RALEKFREMEFLGFKPD-RVALIAVLTA--CRHGGLVREGMELFE 597 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 597 (667)
+|++.+++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888887777764 343 3344444444 666777777777776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00042 Score=54.40 Aligned_cols=93 Identities=9% Similarity=-0.108 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
+..+...+.+.|++++|...|++..+.. +-+...+..+..++...|+.++|...+++..+.. |.+...+..+...|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3344455556666666666666665532 2244455555555666666666666666655553 324445555555555
Q ss_pred hcCChHHHHHHHHhcC
Q 005969 519 KCGSIGSSVKIFNEMT 534 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~ 534 (667)
..|++++|...+++..
T Consensus 97 ~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 97 NEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00049 Score=68.85 Aligned_cols=94 Identities=12% Similarity=-0.044 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
...|..+..+|.+.|++++|+..+++..+. .| +...|..+..+|...|++++|...|++..+. .+-+...+..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~ 392 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 356777777888888888888888888774 34 4667777788888888888888888877432 233456677777
Q ss_pred HHHhhcCChHHHHH-HHHhC
Q 005969 617 DLLVRYGHLKEAEK-IITTM 635 (667)
Q Consensus 617 ~~~~~~g~~~~A~~-~~~~m 635 (667)
.++.+.|+.++|.+ .+.+|
T Consensus 393 ~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 393 MCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777776653 44544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00035 Score=58.44 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=32.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 575 ALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.|..+..+|.+.|++++|...+++.... -+.+...|..+..++...|++++|.+.+++.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 4555555555666666666666555333 2233445555556666666666666655554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00027 Score=55.21 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
..+..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|...+++....
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555666666667777777777776664 33 3556666666677777777777777766544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00056 Score=66.07 Aligned_cols=89 Identities=10% Similarity=-0.025 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
...|..+..+|.+.|++++|++.+++..+. .| +...|..+..+|...|++++|...|++..+. .+.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345666666777777777777777777663 34 3556666777777777777777777766433 222344555556
Q ss_pred HHHhhcCChHHHHH
Q 005969 617 DLLVRYGHLKEAEK 630 (667)
Q Consensus 617 ~~~~~~g~~~~A~~ 630 (667)
.++.+.++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00064 Score=67.98 Aligned_cols=120 Identities=6% Similarity=-0.083 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKPD----------------RVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
..|..+...+.+.|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|+..+++....
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35556666677777777777777777663 332 468889999999999999999999999655
Q ss_pred hCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHhh
Q 005969 603 YGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPP-NALIWRTFLEGCQRCRIAKYDTL 662 (667)
Q Consensus 603 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 662 (667)
.+.+...|..+..+|...|++++|.+.|++. .+.| +...+..+...+.+.|+.+.+++
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999988 4555 45677777777888887776654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.034 Score=51.88 Aligned_cols=191 Identities=15% Similarity=0.076 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC-hHHHHHH
Q 005969 453 KEVLELFKYMRAARIYPDNYTFVSLLSACSKLC--NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS-IGSSVKI 529 (667)
Q Consensus 453 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 529 (667)
++++.+++.+.... +-+..+|+.-...+...+ .++.+..+++.+.+.. |.+...|+.-...+...|. ++++++.
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34444444444421 123333333333333333 2445555555554443 2244444444444444444 3445544
Q ss_pred HHhcCC---CChhhHHHHHHHHHhC--------------CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcc-----
Q 005969 530 FNEMTD---RNVITWTALISALGLN--------------GFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHG----- 586 (667)
Q Consensus 530 ~~~~~~---~~~~~~~~li~~~~~~--------------~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~----- 586 (667)
++.+.+ .|...|+.....+... +.++++++.+++.... .| |...|+.+-..+.+.
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 444442 1333343333222222 2355666666666653 34 344554444444333
Q ss_pred ------CCHHHHHHHHHHhHHhhCCCCCc-chhHHHHH---HHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHH
Q 005969 587 ------GLVREGMELFERMNRSYGVEPEM-DHYHCVVD---LLVRYGHLKEAEKIITTMP-FPPN-ALIWRTFLEGC 651 (667)
Q Consensus 587 ------g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~---~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~ 651 (667)
+.++++++.++++.+. .|+. ..+..++. .....|..+++.++++++. +.|. .--|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~---~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL---EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh---CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3456666666666433 3332 22222221 1223456666666666663 3443 33334443333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0032 Score=50.65 Aligned_cols=110 Identities=12% Similarity=0.018 Sum_probs=62.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh----cCChHH
Q 005969 450 GDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK----CGSIGS 525 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 525 (667)
+++++|..+|++..+.| .|+.. +-..|...+.+++|.+.+++..+.| ++..+..|...|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHH
Confidence 35666777777776666 33333 4455555566666777777666654 45555666666655 455555
Q ss_pred HHHHHHhcC-CCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 005969 526 SVKIFNEMT-DRNVITWTALISALGL----NGFAQRALEKFREMEFLG 568 (667)
Q Consensus 526 A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g 568 (667)
|.+.|+... ..+...+..|...|.. .++.++|.++|++..+.|
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555555443 2344445555555554 455555555555555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00038 Score=69.98 Aligned_cols=118 Identities=5% Similarity=-0.059 Sum_probs=89.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS 522 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 522 (667)
...+.+.|++++|.+.+++..+.. +-+...+..+..++.+.|++++|.+.+++..+.. |.+...+..+..+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 345667899999999999988853 3357788888999999999999999999998874 4478888899999999999
Q ss_pred hHHHHHHHHhcC--CC-ChhhHHHHHHH--HHhCCChHHHHHHHHH
Q 005969 523 IGSSVKIFNEMT--DR-NVITWTALISA--LGLNGFAQRALEKFRE 563 (667)
Q Consensus 523 ~~~A~~~~~~~~--~~-~~~~~~~li~~--~~~~~~~~~A~~~~~~ 563 (667)
+++|.+.|++.. .| +...+..+..+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999998876 33 34455556555 7778888888888776
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00016 Score=55.70 Aligned_cols=94 Identities=9% Similarity=-0.028 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-------cc
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-------MD 610 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~ 610 (667)
...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+++... ..|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 3456667777777888888888888877742 23466777777788888888888888887742 3444 34
Q ss_pred hhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 611 HYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+..+..++...|+.++|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4555666666666666665555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00096 Score=54.16 Aligned_cols=62 Identities=18% Similarity=0.049 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCC-HhHH----HHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFL-----GFKPD-RVAL----IAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
.|..+..++.+.|++++|+..+++.++. -+.|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777778888888888888888887772 11665 3466 7788888888888888888887743
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00077 Score=65.06 Aligned_cols=121 Identities=7% Similarity=-0.028 Sum_probs=90.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc--------------CCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFL--------------GFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~--------------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
+..+...+.+.|++++|++.|++..+. ...| +..+|..+..+|.+.|++++|+..+++..+. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 455566666667777777776666541 0233 3568889999999999999999999998543 2
Q ss_pred CCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHhhh
Q 005969 606 EPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 663 (667)
+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+...++.+.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999873 444 577777777778877877777654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00056 Score=65.28 Aligned_cols=144 Identities=10% Similarity=-0.029 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 005969 471 NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGL 550 (667)
Q Consensus 471 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 550 (667)
...+..+...+.+.|+++.|...|+...+.. | +... +...++.+++...+. ...|..+..+|.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p-~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~ 242 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--G-DDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--C-HHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--c-cchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHH
Confidence 4556677777888899999999998887763 2 2221 223334444443332 2377888899999
Q ss_pred CCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHH-hhcCChHH
Q 005969 551 NGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLL-VRYGHLKE 627 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~~ 627 (667)
.|++++|+..+++..+. .| +...|..+..+|...|++++|...|++..+. .| +...+..+..+. ...+..++
T Consensus 243 ~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp TTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999885 45 5678899999999999999999999987433 34 344555555552 34456777
Q ss_pred HHHHHHhC
Q 005969 628 AEKIITTM 635 (667)
Q Consensus 628 A~~~~~~m 635 (667)
+.+.|.+|
T Consensus 318 a~~~~~~~ 325 (338)
T 2if4_A 318 QKEMYKGI 325 (338)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 88888877
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0027 Score=52.89 Aligned_cols=59 Identities=12% Similarity=-0.019 Sum_probs=28.7
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
..+..+..+|.+.|++++|...++... .| +...|..+..+|...|++++|+..|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344444455555555555555544443 12 333444455555555555555555555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00093 Score=51.31 Aligned_cols=91 Identities=9% Similarity=0.058 Sum_probs=72.7
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCC-------HHH
Q 005969 572 DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPN-------ALI 643 (667)
Q Consensus 572 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~-------~~~ 643 (667)
+...+..+...+...|++++|.+.+++.... .+.+...+..+..++.+.|++++|.+.+++. ...|+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 4567788899999999999999999999655 3456778899999999999999999999987 45665 566
Q ss_pred HHHHHHHHHhcCChhHHhhhh
Q 005969 644 WRTFLEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 644 ~~~l~~~~~~~~~~~~a~~~~ 664 (667)
+..+..++...|+.+.|....
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 667777777777766665443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0012 Score=63.07 Aligned_cols=140 Identities=11% Similarity=0.034 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
+..+...+.+.|++++|...|++.... .|+... +...++.+.+...+ ....|..+...|.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~~~ 241 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 455566677788888888888887763 344331 11112222211111 1124555555566
Q ss_pred hcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHH-HhccCCHHHHH
Q 005969 519 KCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTA-CRHGGLVREGM 593 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~-~~~~g~~~~A~ 593 (667)
+.|++++|...++... .| +...|..+..+|...|++++|+..|++..+. .|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665544 22 4445556666666666666666666665542 343 2233333333 22344555566
Q ss_pred HHHHHhH
Q 005969 594 ELFERMN 600 (667)
Q Consensus 594 ~~~~~~~ 600 (667)
..|..|.
T Consensus 320 ~~~~~~l 326 (338)
T 2if4_A 320 EMYKGIF 326 (338)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 6666553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0012 Score=49.65 Aligned_cols=61 Identities=16% Similarity=0.049 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
...+..+...|...|++++|++.|++..+. .| +...|..+..+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666666666666666666653 33 34456666666666666666666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0032 Score=50.66 Aligned_cols=110 Identities=10% Similarity=-0.053 Sum_probs=84.7
Q ss_pred cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-CCChhhHHHHHHHHHh----CCChHHHH
Q 005969 484 LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT-DRNVITWTALISALGL----NGFAQRAL 558 (667)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~ 558 (667)
.++.++|.+.+++..+.+ ++... |...|...+.+++|.+.|+... ..+...+..|...|.. .++.++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~g----~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN----EMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT----CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC----CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 356788899999988887 23333 7777777788888888888766 4567788888888877 78899999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhHHh
Q 005969 559 EKFREMEFLGFKPDRVALIAVLTACRH----GGLVREGMELFERMNRS 602 (667)
Q Consensus 559 ~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 602 (667)
++|++..+.| ++..+..|...|.. .+++++|..++++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999988864 56667777777777 78889999988887433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.043 Score=51.18 Aligned_cols=191 Identities=10% Similarity=0.036 Sum_probs=130.0
Q ss_pred HHcCChh-HHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCC----------hhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 447 AHNGDYK-EVLELFKYMRAARIYPDNY-TFVSLLSACSKLCN----------LALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 447 ~~~g~~~-~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
.+.|.++ +|+.+++.+.. +.|+.. .++.--..+...+. ++.+..+++.+.... |.+..+|+.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 4556654 78999999887 446543 33332222222222 577888888888875 44778888777
Q ss_pred HHHHhcC--ChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc--
Q 005969 515 DMYGKCG--SIGSSVKIFNEMTD---RNVITWTALISALGLNGF-AQRALEKFREMEFLGFKPDRVALIAVLTACRHG-- 586 (667)
Q Consensus 515 ~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~-- 586 (667)
..+...+ .++++..+++.+.+ .|...|+--...+...|. .+++++.++++.+.. +-|...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 7777777 48999999998883 466778777777778888 599999999999863 33566777665555443
Q ss_pred ------------CCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc-----------CChHHHHHHHHhC-CCCCCHH
Q 005969 587 ------------GLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY-----------GHLKEAEKIITTM-PFPPNAL 642 (667)
Q Consensus 587 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~ 642 (667)
+.++++++.+...... .|-|...|+.+-..+.+. +.++++++.++++ ...||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 5578899999988665 344555565555555444 4577888888888 356664
Q ss_pred HHH
Q 005969 643 IWR 645 (667)
Q Consensus 643 ~~~ 645 (667)
.|.
T Consensus 272 ~w~ 274 (331)
T 3dss_A 272 KWC 274 (331)
T ss_dssp HHH
T ss_pred chH
Confidence 454
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0053 Score=49.81 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHhccCChhhHHHHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPD--------N-----YTFVSLLSACSKLCNLALGSSLHGLIKK 499 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 499 (667)
+......+.+.|++++|+..|++..+. .|+ . ..|..+..++.+.|++++|+..++...+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344556677788888888888887763 333 1 1444444445555555555555554444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0044 Score=45.20 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLL 619 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 619 (667)
.+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++.... .+.+...+..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 44555556666666666666666666541 223455666666666666666666666666433 122334444444444
Q ss_pred hh
Q 005969 620 VR 621 (667)
Q Consensus 620 ~~ 621 (667)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 33
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0027 Score=63.38 Aligned_cols=120 Identities=7% Similarity=-0.115 Sum_probs=69.7
Q ss_pred hccCChhhHHHHHHHHHHh-----CC-CCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC----------CC-hhhHHHH
Q 005969 482 SKLCNLALGSSLHGLIKKT-----EI-ISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD----------RN-VITWTAL 544 (667)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~-~~~~~~l 544 (667)
...|++++|..++++..+. |. .|....+++.|..+|...|++++|+.++++..+ |+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455666666655554432 11 111234566666666666666666666655441 11 2356677
Q ss_pred HHHHHhCCChHHHHHHHHHHHH-----cCCC-CC-HhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 545 ISALGLNGFAQRALEKFREMEF-----LGFK-PD-RVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~-----~g~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
...|...|++++|+.++++..+ .|-. |+ ..+...+..++...|.+++|..+++++.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776543 2211 22 22455666677777778888888877744
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.001 Score=66.37 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=91.3
Q ss_pred HHHHhcCChHHHHHHHHhcCC-------CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCC---C-HhHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMTD-------RN----VITWTALISALGLNGFAQRALEKFREMEFL---GFKP---D-RVAL 576 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---g~~p---~-~~~~ 576 (667)
..+...|++++|+.++++..+ ++ ..+++.|...|...|++++|+.++++..+- -+.| + ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345678999999988876651 22 248899999999999999999999997642 1223 3 3488
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHh----hCC-CC-CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRS----YGV-EP-EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+.|...|...|++++|..++++...- +|- .| ...+...+..++...|.+++|+.++.++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987432 221 12 2345567777888888999999999887
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0013 Score=51.05 Aligned_cols=59 Identities=15% Similarity=0.010 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
..+..+...|...|++++|+..|++..+. .| +...|..+..+|...|++++|...|++.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444455555555555555555443 22 2334444555555555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0036 Score=48.36 Aligned_cols=97 Identities=7% Similarity=-0.065 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHH
Q 005969 555 QRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIIT 633 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (667)
++|++.|++..+. .| +...+..+...|...|++++|...+++.... .+.+...+..+..++...|++++|.+.++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3577888888874 45 5778899999999999999999999999655 34456788899999999999999999999
Q ss_pred hCC----CCCCHHHHHHHHHHHHhcC
Q 005969 634 TMP----FPPNALIWRTFLEGCQRCR 655 (667)
Q Consensus 634 ~m~----~~p~~~~~~~l~~~~~~~~ 655 (667)
+.. ..++......+...+...+
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHhc
Confidence 872 2234555555555554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0037 Score=46.82 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=68.4
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHH
Q 005969 572 DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP----FPPNALIWRTF 647 (667)
Q Consensus 572 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~l 647 (667)
+...+..+...|...|++++|...|++..+. .+.+...|..+..+|.+.|++++|.+.+++.- ..++......+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 5678889999999999999999999999665 34456789999999999999999999998872 34666777777
Q ss_pred HHHHHhcCChh
Q 005969 648 LEGCQRCRIAK 658 (667)
Q Consensus 648 ~~~~~~~~~~~ 658 (667)
...+...+...
T Consensus 84 ~~~l~~~~~~~ 94 (100)
T 3ma5_A 84 QDAKLKAEGLE 94 (100)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHccccc
Confidence 77766665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.046 Score=55.94 Aligned_cols=168 Identities=10% Similarity=-0.015 Sum_probs=106.9
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCC----------hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh
Q 005969 451 DYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCN----------LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK 519 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (667)
..++|++.++++... .|+ ...|+.--..+...++ ++++.+.++.+.+.. |.+..+|..-...+.+
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 345678888888774 344 3345444444444444 677778888777765 4466777777777777
Q ss_pred cC--ChHHHHHHHHhcCC---CChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcc------
Q 005969 520 CG--SIGSSVKIFNEMTD---RNVITWTALISALGLNG-FAQRALEKFREMEFLGFKP-DRVALIAVLTACRHG------ 586 (667)
Q Consensus 520 ~~--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~------ 586 (667)
.+ +++++.+.++.+.+ .|...|+.-...+...| ..+++++.++++.+. .| |...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhcccccc
Confidence 77 56888888877763 35566776666666777 677888888877764 34 455666655554432
Q ss_pred --------CCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChH
Q 005969 587 --------GLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLK 626 (667)
Q Consensus 587 --------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 626 (667)
+.++++.+.+++.... .+-+...|..+...+.+.++.+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence 4567777777776544 3444556666666666666533
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0033 Score=50.89 Aligned_cols=93 Identities=12% Similarity=-0.056 Sum_probs=47.8
Q ss_pred ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh----------HHHHHHHHhcC--CC-ChhhHHHHHHHHHhC-
Q 005969 486 NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI----------GSSVKIFNEMT--DR-NVITWTALISALGLN- 551 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~--~~-~~~~~~~li~~~~~~- 551 (667)
.+++|.+.++...+.. |.+...+..+..++...+++ ++|+..|++.. +| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3444444444444443 33444554444444444432 35555555443 23 233455555555444
Q ss_pred ----------CChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 552 ----------GFAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 552 ----------~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
|++++|++.|++..+ +.|+...|...+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 367777777777777 46766655554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.028 Score=40.74 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY 517 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 517 (667)
.+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+.. |.+...+..+...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 44555566666777777777777766542 2345566666666677777777777777666653 33455555555444
Q ss_pred Hh
Q 005969 518 GK 519 (667)
Q Consensus 518 ~~ 519 (667)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.1 Score=48.87 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=25.1
Q ss_pred CCcchHHHHHHHHH--HcC---ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 005969 434 PDIVSWNIVIAACA--HNG---DYKEVLELFKYMRAARIYPDN-YTFVSLLSA 480 (667)
Q Consensus 434 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~ 480 (667)
.+...|...+.+.. ..+ +..+|..+|++..+. .|+. ..+..+..+
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a 242 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALV 242 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 45566666665543 223 346788888888774 4653 344433333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.075 Score=54.35 Aligned_cols=169 Identities=10% Similarity=-0.016 Sum_probs=125.7
Q ss_pred CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC----------hHHHHHHHHhcCC---CChhhHHHHHHHHHhC
Q 005969 485 CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS----------IGSSVKIFNEMTD---RNVITWTALISALGLN 551 (667)
Q Consensus 485 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 551 (667)
...++|.+.++.+.+.+ |.+...|+.--..+...|+ ++++.+.++.+.+ .+..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34567889999998886 4466777766666666666 8999999998873 3667888888888888
Q ss_pred C--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC-CHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc------
Q 005969 552 G--FAQRALEKFREMEFLGFKPDRVALIAVLTACRHGG-LVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY------ 622 (667)
Q Consensus 552 ~--~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 622 (667)
+ +++++++.++++.+.. +-|...|+.-...+.+.| .++++++.++++++. -+-+...|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhcccccc
Confidence 9 6799999999999963 336778888888888888 899999999988554 344556676666666553
Q ss_pred --------CChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChh
Q 005969 623 --------GHLKEAEKIITTM-PF-PPNALIWRTFLEGCQRCRIAK 658 (667)
Q Consensus 623 --------g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~~~ 658 (667)
+.+++|.+.+++. .. +-+...|.-+-..+...++.+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 5578888888776 23 346778887777777666533
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.18 Score=54.62 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=46.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCCh
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFA 554 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 554 (667)
..++..+.+.|..+.|.++.+. +. .-.......|++++|.++.+.+. +...|..+...+.+.+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~----------~~---~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD----------QD---QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNF 697 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC----------HH---HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCChHHheecCCC----------cc---hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCH
Confidence 5555556666666666654421 11 11233455677777777766553 446677777777777777
Q ss_pred HHHHHHHHHHHH
Q 005969 555 QRALEKFREMEF 566 (667)
Q Consensus 555 ~~A~~~~~~~~~ 566 (667)
+.|.+.|.++.+
T Consensus 698 ~~A~~~y~~~~d 709 (814)
T 3mkq_A 698 KLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHccC
Confidence 777777776543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0041 Score=50.34 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=57.7
Q ss_pred HhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCCh----------HHHHHHHHHHHHcCCCCC-HhHHHHHHHHH
Q 005969 518 GKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFA----------QRALEKFREMEFLGFKPD-RVALIAVLTAC 583 (667)
Q Consensus 518 ~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~----------~~A~~~~~~~~~~g~~p~-~~~~~~li~~~ 583 (667)
.+.+.+++|.+.++... .| +...|..+..++...+++ ++|+..|++.++ +.|+ ...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 34455677777776655 33 555666666666666553 477777777777 3554 45677777777
Q ss_pred hccC-----------CHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 005969 584 RHGG-----------LVREGMELFERMNRSYGVEPEMDHYHCVVD 617 (667)
Q Consensus 584 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 617 (667)
...| ++++|.+.|++..+ +.|+...|..-+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 6653 67777777776643 3555554443333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.3 Score=52.92 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=79.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHH
Q 005969 377 GSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVL 456 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 456 (667)
..++..+.+.|..++|+++.+. -..-.......|++++|.++.+.+. +...|..+...+.+.|+++.|.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~ 701 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QDQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAI 701 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HHHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------cchheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHH
Confidence 4666677777888887764431 1222344566778888877776663 4567788888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHh
Q 005969 457 ELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNE 532 (667)
Q Consensus 457 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 532 (667)
+.|.++.+ |..+...+...++.+...++.+.....| -++.....|.+.|++++|.+++.+
T Consensus 702 ~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 702 EAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 88877643 3344445555666666555555555443 123334445556666666655444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.099 Score=49.03 Aligned_cols=129 Identities=10% Similarity=0.033 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHhc-----cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh---cC-C----h---HHHHHHH
Q 005969 467 IYPDNYTFVSLLSACSK-----LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK---CG-S----I---GSSVKIF 530 (667)
Q Consensus 467 ~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~----~---~~A~~~~ 530 (667)
.+.+...|...+++... ..+..+|..+|+++.+.. |.....+..+..+|.. .+ . . ..+.+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 45566777777766432 234577888888888874 4344555544444431 00 0 0 1111111
Q ss_pred HhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 531 NEMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 531 ~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
..+. ..+...|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.+++.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111 234455555555555556666666666666664 355555555555566666666666666655
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.021 Score=55.92 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=57.3
Q ss_pred hCCChHHHHHHHHHHHHc---CCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHh----hC-CCCC-cchhHHHH
Q 005969 550 LNGFAQRALEKFREMEFL---GFKPD----RVALIAVLTACRHGGLVREGMELFERMNRS----YG-VEPE-MDHYHCVV 616 (667)
Q Consensus 550 ~~~~~~~A~~~~~~~~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~-~~~~~~l~ 616 (667)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++...- +| ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777776541 12232 246778888888888888888888776432 11 1222 24578888
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 005969 617 DLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~m 635 (667)
..|...|++++|..++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 8888888888888887765
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.46 Score=36.48 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
..++..+..+..+|+-+.-.+++..+... .+|++...--+..+|.+.|+..+|.+++.+..++ |+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 34555667777777777777777775332 4677777777777888888888888777777444 54
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.039 Score=40.85 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=39.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-CHh-HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGFKP-DRV-ALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
...+...|++++|++.+++..+. .| +.. .+..+..+|...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44566677777777777777774 34 345 6777777777777888887777777544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.037 Score=54.24 Aligned_cols=91 Identities=18% Similarity=0.069 Sum_probs=63.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcC---CCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhh--CCCC---C-cch
Q 005969 545 ISALGLNGFAQRALEKFREMEFLG---FKPD----RVALIAVLTACRHGGLVREGMELFERMNRSY--GVEP---E-MDH 611 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~---~-~~~ 611 (667)
+..+...|++++|++++++..+.. +.|+ ..+++.|..+|...|++++|..++++...-+ -+.| + ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888888877531 2333 3477888888888888888888888764321 1122 2 255
Q ss_pred hHHHHHHHhhcCChHHHHHHHHhC
Q 005969 612 YHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
++.|...|...|++++|..++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 788888899999999988888776
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.37 Score=39.58 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=90.3
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHH
Q 005969 479 SACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRAL 558 (667)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 558 (667)
....+.|+++.|.++.+.+ . +...|..|.+.....|+++-|++.|+...+ +..+.--|...|+.++-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~-~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------N-DSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------C-CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHH
Confidence 3455678999998887654 2 678999999999999999999999998775 444555566677877766
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHh-hcCChHHHHHHHHhCC
Q 005969 559 EKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLV-RYGHLKEAEKIITTMP 636 (667)
Q Consensus 559 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 636 (667)
++-+.....| -++.....+...|+++++.++|.+. |-.|. ...++ ..|..+.|.++.++++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~----~r~~e-------A~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG----GSLPL-------AYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT----TCHHH-------HHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC----CChHH-------HHHHHHHcCcHHHHHHHHHHhC
Confidence 6666655544 2455555667789999999998765 22221 11222 3567788888888875
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.53 Score=36.17 Aligned_cols=137 Identities=14% Similarity=0.066 Sum_probs=88.6
Q ss_pred HhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHH---HHHHHHHHHhcCChh
Q 005969 117 GKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLV---ANSLVNMYFQCAGIW 193 (667)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~ 193 (667)
.-.|..++..+++.+.... .+..-||-+|.-....-+-+...++++.+-+ -.|... ...++..|++.|
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis~C~NlKrVi~C~~~~n--- 88 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDKCQNLKSVVECGVINN--- 88 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGGCSCTHHHHHHHHHTT---
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcHhhhcHHHHHHHHHHhc---
Confidence 4457777777777776553 2344455555444444444544554444322 112111 123344444433
Q ss_pred HHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 005969 194 SAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNAL 273 (667)
Q Consensus 194 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 273 (667)
.+....+..+..+...|.-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 89 -----------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 89 -----------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp -----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -----------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3555677788889999999999999888543 3578888888888899999999999999999988886
Q ss_pred C
Q 005969 274 E 274 (667)
Q Consensus 274 ~ 274 (667)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.029 Score=54.92 Aligned_cols=60 Identities=5% Similarity=-0.132 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH-----cC-CCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEF-----LG-FKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~-----~g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
+++.|...|...|++++|+.++++..+ .| -.|+ ..+++.|...|...|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344444444444455544444444432 11 1122 224555555555555555555555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.043 Score=53.75 Aligned_cols=87 Identities=11% Similarity=-0.012 Sum_probs=60.8
Q ss_pred HHHHhcCChHHHHHHHHhcCC-------CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc-----C-CCCC-HhHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMTD-------RN----VITWTALISALGLNGFAQRALEKFREMEFL-----G-FKPD-RVAL 576 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g-~~p~-~~~~ 576 (667)
..+...|++++|+.++++..+ |+ ..+++.+...|...|++++|+.++++...- | -.|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334456677777777665431 21 246778888888888888888888877642 2 1222 3478
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 577 IAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
+.|...|...|++++|..++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8899999999999999999887643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.94 E-value=1.2 Score=36.70 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=51.7
Q ss_pred cCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHH
Q 005969 418 TGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLI 497 (667)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 497 (667)
.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+....+-+..
T Consensus 18 lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 18 YGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp TTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444433 3455666677777777777777766666543 233444444555555555444444
Q ss_pred HHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 498 KKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 498 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
...| -++.....+...|+++++.++|.+..
T Consensus 87 ~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 87 QTRE-------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4433 12333444445566666666655544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.12 Score=41.31 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC---CHHHHHHHHHHhHHhhCCCC--CcchhHHHHHHHhhcCChHHHH
Q 005969 555 QRALEKFREMEFLGFKPDRVALIAVLTACRHGG---LVREGMELFERMNRSYGVEP--EMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
..+.+-|.+..+.| .++..+...+.+++++++ +.+++..++++..+. . .| ....+-.|.-++.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455555554544 255556666666666666 445666666666544 2 23 2344555666666666666666
Q ss_pred HHHHhC-CCCCCH
Q 005969 630 KIITTM-PFPPNA 641 (667)
Q Consensus 630 ~~~~~m-~~~p~~ 641 (667)
+.++.+ .+.|+.
T Consensus 92 ~y~~~lL~ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCC
Confidence 666666 244543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.58 E-value=2.7 Score=38.48 Aligned_cols=186 Identities=13% Similarity=0.044 Sum_probs=116.7
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHH
Q 005969 379 LMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLEL 458 (667)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 458 (667)
-+......|++-+|.+. |..+..-|.+++++++|++++..- ...+.+.|+...|-++
T Consensus 19 rl~~~I~~G~yYEAhQ~------------~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DL 75 (312)
T 2wpv_A 19 RFENKIKAGDYYEAHQT------------LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDL 75 (312)
T ss_dssp HHHHHHHHTCHHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred HHHHHhhccChHHHHHH------------HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHH
Confidence 34556677889999884 446777788888999988876542 3455677887766654
Q ss_pred ----HHHHHHcCCCCCHHHHHHHHHHHhccCCh-----hhHHHHHHHHHHhCC-CCCchhHHhHHHHHHHhcCChHHHHH
Q 005969 459 ----FKYMRAARIYPDNYTFVSLLSACSKLCNL-----ALGSSLHGLIKKTEI-ISSDTFVCNMLIDMYGKCGSIGSSVK 528 (667)
Q Consensus 459 ----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 528 (667)
++-..+.+++++......++..+...... .-..+....-.+.|. ...++.....+...|.+.+++.+|+.
T Consensus 76 a~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 76 IFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 55566778999998888888887653321 222233333333332 22378889999999999999999998
Q ss_pred HHHhcCCCChhhHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 529 IFNEMTDRNVITWTALISALGLN---GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 529 ~~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
.|-.-...+...+..++.-+... |...++--+ . ...+--|.-.|+...|..+++...+.
T Consensus 156 H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~-~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 156 YFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------F-SRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------H-HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHH--------------H-HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77633322344444444333332 322222111 1 11222345667888888888877544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.3 Score=35.48 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 554 AQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.++|..++++..+. .|+ ......+...+.+.|++++|...|+++
T Consensus 25 ~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 25 TDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555554442 332 234444444444555555555555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.16 E-value=3.3 Score=37.86 Aligned_cols=166 Identities=10% Similarity=0.045 Sum_probs=100.7
Q ss_pred hhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHH----HHHHHHCCCcCChhhHHHHHHHhccc
Q 005969 79 TALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFL----FCELVRSEVALTESSFVGVIHGLSNE 154 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~li~~~~~~ 154 (667)
.++..=|.+++++++|++++.. -...+.+.|+...|.++ ++-+.+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3444456777888888887532 34456677887766664 55566778899988888887776553
Q ss_pred C-----chHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHcc---CChh
Q 005969 155 Q-----DLEFGEQIHGLVIKNG--FDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAES---ENFG 224 (667)
Q Consensus 155 ~-----~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~~~ 224 (667)
. ..+-......+-.+.| ...|+..+..+...|.+.|++.+|+.-|-.....|...+..++.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 2 2233444444444443 2357888999999999999999998877643322444555555444443 4333
Q ss_pred HHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHH
Q 005969 225 KALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIK 270 (667)
Q Consensus 225 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 270 (667)
++--.+. ..++ .+.-.|++..|..+++...+
T Consensus 186 e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 186 TVAEFFS--------------RLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred hHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3211111 1122 23345778888877776543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.48 Score=34.64 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=44.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNY-TFVSLLSACSKLCNLALGSSLHGLIKKTE 501 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 501 (667)
....+...|++++|...+++..+.. +.+.. .+..+..++...|+++.|...++...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455667888888888888887753 23455 77777778888888888888888888775
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.23 Score=36.07 Aligned_cols=73 Identities=12% Similarity=-0.120 Sum_probs=55.3
Q ss_pred CCCHhHHHHHHHHHhccCC---HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHH
Q 005969 570 KPDRVALIAVLTACRHGGL---VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWR 645 (667)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 645 (667)
+.|+..+..+..++...++ .++|..++++.... -+-++.....+...+.+.|++++|.+.|+++ ...|+ ..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~ 79 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDR 79 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccH
Confidence 4466777788887764444 79999999998555 3445577788899999999999999999998 35565 4444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.60 E-value=4.4 Score=37.34 Aligned_cols=166 Identities=11% Similarity=-0.019 Sum_probs=100.6
Q ss_pred hhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHH----HHHHHCCCcCChhhHHHHHHHhccc
Q 005969 79 TALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLF----CELVRSEVALTESSFVGVIHGLSNE 154 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~li~~~~~~ 154 (667)
.++..=|.+.+++++|++++-. -...+.+.|+...+.++. +-+.+.++++|......++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3444557788899999887532 244566778877666654 5556788899998888888777755
Q ss_pred Cch-----HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHH
Q 005969 155 QDL-----EFGEQIHGLVIKNG--FDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKAL 227 (667)
Q Consensus 155 ~~~-----~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 227 (667)
..- .-..+.+.+-.+.| ..-|+.....+...|.+.+++.+|+.-|-....+....|..++.-+...+...++
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~- 186 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA- 186 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH-
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH-
Confidence 431 22333334444444 3457888889999999999999998887533333335555555444443332222
Q ss_pred HHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHH
Q 005969 228 ELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIK 270 (667)
Q Consensus 228 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 270 (667)
|...-..++ .+.-.+++..|..+++...+
T Consensus 187 -------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 -------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 111112222 24445677777777666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.7 Score=41.48 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc-----CChHHHHHHHHhcC--CC--ChhhHHHHHHHHHhC-CChHHH
Q 005969 488 ALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC-----GSIGSSVKIFNEMT--DR--NVITWTALISALGLN-GFAQRA 557 (667)
Q Consensus 488 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~--~~--~~~~~~~li~~~~~~-~~~~~A 557 (667)
..|...+++..+....-.+...|..|...|... |+.++|.+.|++.. .| +..++......++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 444555555555532111344666666666663 66666666666655 34 255555666666663 667777
Q ss_pred HHHHHHHHHcCCC
Q 005969 558 LEKFREMEFLGFK 570 (667)
Q Consensus 558 ~~~~~~~~~~g~~ 570 (667)
.+.+++.......
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 7777776664333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.54 Score=35.01 Aligned_cols=60 Identities=8% Similarity=-0.182 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLG------FKPDRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
+..|...+...|+++.|...|++..+.- -.+....+..|..++.+.|+++.|..++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3345555666666666666666655421 01234456666666666666666666666663
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.3 Score=36.42 Aligned_cols=70 Identities=9% Similarity=0.024 Sum_probs=56.0
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhC-----CCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCH
Q 005969 572 DRVALIAVLTACRHGGLVREGMELFERMNRSYG-----VEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNA 641 (667)
Q Consensus 572 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~ 641 (667)
+..-+..|...+.+.|+++.|..+++...+... -.+...++..|..++.+.|++++|...+++.. +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 445566788899999999999999999866531 12345678999999999999999999999883 56654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.49 Score=37.80 Aligned_cols=81 Identities=10% Similarity=-0.068 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 005969 453 KEVLELFKYMRAARIYPDNYTFVSLLSACSKLC---NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 453 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 529 (667)
..+.+-|.+..+.| .++..+.-.+..++++.+ +.+++..+++.+.+..........+-.|.-+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 44555555555544 356666666666666666 44567777776666541000233333344444444444444444
Q ss_pred HHhcC
Q 005969 530 FNEMT 534 (667)
Q Consensus 530 ~~~~~ 534 (667)
++.+.
T Consensus 94 ~~~lL 98 (152)
T 1pc2_A 94 VRGLL 98 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.49 E-value=6.5 Score=36.25 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=88.6
Q ss_pred HHHHHhhCCH---HHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHH
Q 005969 380 MTSYAKSGLI---SDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVL 456 (667)
Q Consensus 380 ~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 456 (667)
+......|++ -+|.+. |..+..-|.+++++++|++++..- ...+.+.|+...|-
T Consensus 19 l~~~I~~G~y~~~YEAHQ~------------~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQE------------TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHH
T ss_pred HHHHHhCCCCccccHHHHH------------HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHH
Confidence 4556677888 788884 445677788889999998876542 34556677776655
Q ss_pred HHH----HHHHHcCCCCCHHHHHHHHHHHhccCChhh-HHHHH----HHHHHhC-CCCCchhHHhHHHHHHHhcCChHHH
Q 005969 457 ELF----KYMRAARIYPDNYTFVSLLSACSKLCNLAL-GSSLH----GLIKKTE-IISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 457 ~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~----~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
++- +-..+.++++|..+...++..+......+- =..+. ..-.+.| ...-++.....+...|.+.+++.+|
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 554 556677899999888888888776553221 12222 2333333 1223788888999999999999999
Q ss_pred HHHHH
Q 005969 527 VKIFN 531 (667)
Q Consensus 527 ~~~~~ 531 (667)
+..|-
T Consensus 156 e~H~i 160 (336)
T 3lpz_A 156 EKHLV 160 (336)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88874
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.10 E-value=15 Score=39.47 Aligned_cols=127 Identities=13% Similarity=0.019 Sum_probs=68.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 444 AACAHNGDYKEVLELFKYMRAARIYPDNYTF--VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
-++...|+.+.+..+++.+.... .|....- ..+.-+|+..|+.....+++..+..... . +......+.-++...|
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~-d-~VRraAViaLGlI~~g 608 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN-D-DVRRAAVIALGFVLLR 608 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC-H-HHHHHHHHHHHHHTSS
T ss_pred HHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc-H-HHHHHHHHHHHhhccC
Confidence 33446678888888888777631 2222211 1233457777888777778887776531 1 2333333333444456
Q ss_pred ChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCCHhHH
Q 005969 522 SIGSSVKIFNEMT---DRNVITWTALISALGLNGFA-QRALEKFREMEFLGFKPDRVAL 576 (667)
Q Consensus 522 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~-~~A~~~~~~~~~~g~~p~~~~~ 576 (667)
+.+.+.++++.+. +|.+..-..+.-+....|+. .+++.++..+.. .+|..+-
T Consensus 609 ~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 609 DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 6666667766544 23333333334444444443 567777777765 4454433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.92 E-value=1.1 Score=34.29 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHH---HHHHHHHhHHhhCCCC--CcchhHHHHHHHhhcCChHH
Q 005969 553 FAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVRE---GMELFERMNRSYGVEP--EMDHYHCVVDLLVRYGHLKE 627 (667)
Q Consensus 553 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 627 (667)
.+..+.+-|.+....| .|+..+-..+.+++.++..... ++.+++++.+. + .| .....-.|.-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445555555555544 3666666667777777766555 66777766443 2 12 23344556666777777777
Q ss_pred HHHHHHhC-CCCC
Q 005969 628 AEKIITTM-PFPP 639 (667)
Q Consensus 628 A~~~~~~m-~~~p 639 (667)
|.+.++.+ ...|
T Consensus 93 A~~~~~~lL~~eP 105 (126)
T 1nzn_A 93 ALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCC
Confidence 77777776 2444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=1.5 Score=39.36 Aligned_cols=80 Identities=5% Similarity=-0.018 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcc-----CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc-CC
Q 005969 452 YKEVLELFKYMRAARIYPD---NYTFVSLLSACSKL-----CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC-GS 522 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 522 (667)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..+.+... +..++....+.+++. |+
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCC
Confidence 3456666666666 4565 45677777777773 78888888888888876322 366777777777774 78
Q ss_pred hHHHHHHHHhcC
Q 005969 523 IGSSVKIFNEMT 534 (667)
Q Consensus 523 ~~~A~~~~~~~~ 534 (667)
.+++.+.+++..
T Consensus 256 ~~~a~~~L~kAL 267 (301)
T 3u64_A 256 RAGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888776
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=17 Score=37.31 Aligned_cols=450 Identities=9% Similarity=-0.044 Sum_probs=216.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHH
Q 005969 16 YSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEV 94 (667)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 94 (667)
..+.|++..+..+...+...-+. .-..|..+.. +...... ++..-+.+..+.+.....-..-+..+++.+++...
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLMNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGGGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCcccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 44568888777776666443222 2235555544 3332333 33333444332344444455667778889999999
Q ss_pred HHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCC
Q 005969 95 VSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDY 174 (667)
Q Consensus 95 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 174 (667)
..++.. +..+...-.....+....|+..+|......+-..|. ..+.....++..+ .+.|.-.
T Consensus 92 l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~----------------~~~g~lt 153 (618)
T 1qsa_A 92 LAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVW----------------RASGKQD 153 (618)
T ss_dssp HHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHH----------------HHTTCSC
T ss_pred HHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHH----------------HHCCCCC
Confidence 998877 433444445567778888998888888888766553 2333444444444 4333322
Q ss_pred chHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHH---HHHH
Q 005969 175 ELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVY---VINS 251 (667)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~---ll~~ 251 (667)
+...+.. +......|+...|..+...+..........++.... ++..+...... +.|+...-.. .+.-
T Consensus 154 ~~~~~~R-~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 154 PLAYLER-IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFAS 224 (618)
T ss_dssp HHHHHHH-HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChhhHHHHHHHHHH
Confidence 2233333 344556677778877777664222122233332222 22333332221 1222221111 1222
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCC-ChHHHHHH
Q 005969 252 CAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKS-SPTSIFLL 330 (667)
Q Consensus 252 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~ 330 (667)
+.+ .+.+.|...+....+... .+......+ +..+.......+ +.++...+
T Consensus 225 lar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~---------------------------~~~ia~~~~~~~~~~~~~~~~ 275 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQQ-LNEDQIQEL---------------------------RDIVAWRLMGNDVTDEQAKWR 275 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHH---------------------------HHHHHHTSCSTTCCHHHHHHH
T ss_pred HHh-cCHHHHHHHHHhhhhccC-CCHHHHHHH---------------------------HHHHHHHHHHcCCChHHHHHH
Confidence 222 245556555555543321 111111111 111111122223 22233333
Q ss_pred HHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCC--Ccchh
Q 005969 331 IELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPR--AVVPA 408 (667)
Q Consensus 331 ~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 408 (667)
....... ++.... .-.+....+.|+++.|...|+.+...+ .....
T Consensus 276 ~~~~~~~--~~~~~~-------------------------------e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~ 322 (618)
T 1qsa_A 276 DDAIMRS--QSTSLI-------------------------------ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 322 (618)
T ss_dssp HHHHHTC--CCHHHH-------------------------------HHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHH
T ss_pred HhccccC--CChHHH-------------------------------HHHHHHHHHCCCHHHHHHHHHHccccccccHhHH
Confidence 3322111 111111 122223345688888888888774332 22223
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHH---HHHHHHHHHh
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYP---DNY---TFVSLLSACS 482 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~---~~~~ll~~~~ 482 (667)
--+..++...|+.++|..+|..+.++. ..|. ++.+ .+.|..... . . ..+.+ ... .-..-+..+.
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a~~~-~fYg-~lAa-~~Lg~~~~~-~----~--~~~~~~~~~~~~~~~~~~r~~~L~ 392 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLMQQR-GFYP-MVAA-QRIGEEYEL-K----I--DKAPQNVDSALTQGPEMARVRELM 392 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC-SHHH-HHHH-HHTTCCCCC-C----C--CCCCSCCCCHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCC-ChHH-HHHH-HHcCCCCCC-C----C--CCCChhHHhhhccChHHHHHHHHH
Confidence 456667777788888888888777642 2333 3221 222321000 0 0 00111 000 1112233455
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC------hhhHHHHHHHHHhCCChHH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN------VITWTALISALGLNGFAQR 556 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~ 556 (667)
..|....|...+..+.+.. +......+.......|..+.+..........+ +..|..++..+.+.-.++.
T Consensus 393 ~~g~~~~a~~ew~~~~~~~----~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~ 468 (618)
T 1qsa_A 393 YWNLDNTARSEWANLVKSK----SKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQ 468 (618)
T ss_dssp HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCH
T ss_pred HCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCH
Confidence 6777888877777766532 33333445555566777777666555444322 1245556666666555555
Q ss_pred HHHHHHHHHHcCCCCC
Q 005969 557 ALEKFREMEFLGFKPD 572 (667)
Q Consensus 557 A~~~~~~~~~~g~~p~ 572 (667)
.+-.---..+.++.|+
T Consensus 469 ~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 469 SYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhCCCCCC
Confidence 5444333445555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.93 E-value=1.8 Score=34.93 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=23.4
Q ss_pred chhHHHHHHHhhcCChHHHHHHHHhCCC
Q 005969 610 DHYHCVVDLLVRYGHLKEAEKIITTMPF 637 (667)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 637 (667)
+.--.+..+|.+.|++++|+.+++.++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 4445688899999999999999999973
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.75 E-value=3.2 Score=29.75 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=63.4
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELV 133 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (667)
..++|.-|-+.+...+ . ...+-..-+..+...|++++|..+.+.+.-||...|-+|-. .+.|-.+.+..-+.++.
T Consensus 21 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 5667777777777666 2 44444444567889999999999999999999999987755 57788888888887887
Q ss_pred HCCCcCChhhHH
Q 005969 134 RSEVALTESSFV 145 (667)
Q Consensus 134 ~~~~~~~~~~~~ 145 (667)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 34444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=88.84 E-value=3.4 Score=29.65 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=62.1
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELV 133 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (667)
..++|.-|-+.+...+ . ...+-..-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+.+..-+.++.
T Consensus 22 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 5667777777777666 2 44444444567889999999999999999999999987755 46788888887777777
Q ss_pred HCCCcCChhhH
Q 005969 134 RSEVALTESSF 144 (667)
Q Consensus 134 ~~~~~~~~~~~ 144 (667)
.+| .|....|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 766 3444444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.79 E-value=13 Score=36.38 Aligned_cols=95 Identities=11% Similarity=0.096 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC---HhHHHHHHHHHhccCCHHHHHHHHHHhHHh-hCCCCCc----c
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFL--GFKPD---RVALIAVLTACRHGGLVREGMELFERMNRS-YGVEPEM----D 610 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~ 610 (667)
...|...+...|++.+|.+++.++... |..+. ...+..-++.|...+++..|..++.++... +...+++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345667777788888888888877542 22211 225566677777888888888888776321 1122221 3
Q ss_pred hhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 611 HYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+...+..+...+++.+|-+.|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4556666677777777776665554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.49 E-value=2.3 Score=44.44 Aligned_cols=53 Identities=13% Similarity=-0.071 Sum_probs=42.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
..-|...|+++-|+++.++.... .|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34566788888899988888884 665 558888999999999999998888876
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=88.07 E-value=2.6 Score=32.31 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=16.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKPD 572 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p~ 572 (667)
|.-++.+.|++++|.+.++.+.+ +.|+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH--hCCC
Confidence 44555666666666666666666 3553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.35 E-value=9.5 Score=30.20 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=45.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 449 NGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
.+++++|.++|+.+++.+-+- ...+.....--.+.|++..|.+++......+..| ...+...+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~--~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP--LEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC--HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc--HHHHHHHHH
Confidence 478899999999887653333 5566666666678899999999999988877443 444444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.05 E-value=4.5 Score=29.25 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 005969 554 AQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
.-+..+-++.+....+.|++......+++|.+..|+..|..+++-++.+ ..+...+|..+++-
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 3345555666666677888888888888888888888888888887544 33335566666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.79 E-value=3.7 Score=39.44 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH----hhCCCCCcchhHH
Q 005969 542 TALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNR----SYGVEPEMDHYHC 614 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~ 614 (667)
..++..+...|+.++|+..++.+... -+-+...+..++.++.+.|+..+|++.|+++.+ ..|+.|+..+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34566677788888888888777764 133666888888888888888888888877633 4588887765433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.38 E-value=18 Score=35.45 Aligned_cols=162 Identities=6% Similarity=0.026 Sum_probs=84.6
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHHhcCCCc-----hHHHHHHHHHHHhcCChhHHHHhhccCC-----C---CC--chh
Q 005969 145 VGVIHGLSNEQDLEFGEQIHGLVIKNGFDYE-----LLVANSLVNMYFQCAGIWSAEKMFKDVE-----I---RD--VVS 209 (667)
Q Consensus 145 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~--~~~ 209 (667)
..|...+...|++.+|..++..+...-...+ ...+...+..|...+++..|..+++++. . |+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 3455666667777777777777654322211 3456666777777777777776666542 1 11 124
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhHhC-CcCCChhhHHH----HHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHH
Q 005969 210 WNTIIGALAESENFGKALELYLRMSVD-IVFPNQTTFVY----VINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALV 284 (667)
Q Consensus 210 ~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 284 (667)
|...+..+...+++.+|...|.+.... .+.-|...+.. ++.+..-.+....-..++....+...-++...+..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 555666667777887777766665432 11122222211 1111111122222223333333333334556677777
Q ss_pred HHHHhc--CChHHHHHHHhccCCC
Q 005969 285 DFYAKC--DNLEGAHLCFSEISNK 306 (667)
Q Consensus 285 ~~~~~~--g~~~~a~~~~~~~~~~ 306 (667)
.+|... .+++...+.|.....+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHhchHhhhHHHHHHHHHHhcc
Confidence 777653 4566666766665443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.06 E-value=9.7 Score=30.15 Aligned_cols=57 Identities=7% Similarity=-0.078 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCch
Q 005969 221 ENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVF 278 (667)
Q Consensus 221 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 278 (667)
++.++|.++|+.+...+-+. ...|.....--.+.|++..|.+++......+..|...
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 67777777777776542222 3333333333567788888888888888777665433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.80 E-value=7.6 Score=43.61 Aligned_cols=162 Identities=10% Similarity=-0.008 Sum_probs=88.2
Q ss_pred hhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchH
Q 005969 79 TALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLE 158 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 158 (667)
..++..+.+.|..+.|.++....++ +...--.+..++...|++++|.++|.+... |+..+.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 3456667777888888777665554 333334456678888999999999977532 221111100 0000
Q ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCChhHHHHhhcc----CCCCC----chhHHHHHHHHHccCChhHHHH
Q 005969 159 FGEQIHGLVIKNG--FDYELLVANSLVNMYFQCAGIWSAEKMFKD----VEIRD----VVSWNTIIGALAESENFGKALE 228 (667)
Q Consensus 159 ~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~----~~~~~~li~~~~~~~~~~~a~~ 228 (667)
. +..+.... ...-..-|..++..+.+.|.++.+.++-+. ....+ ...|..+.+++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 11111111 011223456666666666666665444322 11111 1247777888888888888888
Q ss_pred HHHHhHhCCcCCChhhHHHHHHHhhccCCh
Q 005969 229 LYLRMSVDIVFPNQTTFVYVINSCAGLQNS 258 (667)
Q Consensus 229 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 258 (667)
.+-.+..... -...+..++..++..|..
T Consensus 960 aL~~~pd~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 960 ALMVLSTTPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred HHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence 8877765533 244556666665555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.63 E-value=7.4 Score=28.17 Aligned_cols=63 Identities=8% Similarity=-0.063 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 005969 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVN 184 (667)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 184 (667)
+.-+..+-++.+....+.|++......+++|.+.+|+..|.++++-++..-- ....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 3445666677777778888888888888888888888888888888776542 22445555443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=84.37 E-value=17 Score=30.52 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=37.2
Q ss_pred CCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHh
Q 005969 72 CADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGL 151 (667)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 151 (667)
.+|..+-...+..+.+.|..+....+++.+..++...-...+.++...|..+. ...+..+.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHH
Confidence 34455555555555555554444444444445555444445555555554332 222222322 13444444444444
Q ss_pred cccCc
Q 005969 152 SNEQD 156 (667)
Q Consensus 152 ~~~~~ 156 (667)
...++
T Consensus 101 ~~~~~ 105 (201)
T 3ltj_A 101 GQIGD 105 (201)
T ss_dssp HHHCC
T ss_pred HHhCc
Confidence 44443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.33 E-value=8.8 Score=40.19 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=47.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 580 LTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
.+.|...|+++-|+++-++.+.. .+-+..+|..|..+|...|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44567899999999999988655 45557899999999999999999999999997
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=83.31 E-value=20 Score=30.43 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=22.3
Q ss_pred CChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCC
Q 005969 73 ADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGF 121 (667)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 121 (667)
++..+-...+..+++.|..+....+.+.+..++...-...+.++.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3444444444555555554444444444444444444444444444443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.70 E-value=9.5 Score=29.32 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 005969 556 RALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
+..+-++.+....+.|++......+++|-+..|+..|..+++-++.+ ..+...+|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 44555556666677888888888888888888888888888888544 44445667666654
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=81.42 E-value=15 Score=32.88 Aligned_cols=210 Identities=10% Similarity=-0.088 Sum_probs=92.9
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhh--HHHHHHHhccc
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSLV---TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESS--FVGVIHGLSNE 154 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~ 154 (667)
..+...++.|+.+.+..+++.-...+.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 3444555666666666666554332211 1112333344455543 3334444454433211 11222333334
Q ss_pred CchHHHHHHHHHHHHhcCCCchHH--HHHHHHHHHhcCChhHHHHhhccCCCCCch------------hHHHHHHHHHcc
Q 005969 155 QDLEFGEQIHGLVIKNGFDYELLV--ANSLVNMYFQCAGIWSAEKMFKDVEIRDVV------------SWNTIIGALAES 220 (667)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~ 220 (667)
|+.+ +++.+.+.|..++... -...+...+..|+.+-...+++....++.. .-...+...+..
T Consensus 83 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T 1wdy_A 83 GSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp TCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred CCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence 4443 3334444454333111 112233345566666666666554332211 011233344455
Q ss_pred CChhHHHHHHHHhHhCCcCCCh---hhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchH--HHHHHHHHHhcCChHH
Q 005969 221 ENFGKALELYLRMSVDIVFPNQ---TTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFV--GSALVDFYAKCDNLEG 295 (667)
Q Consensus 221 ~~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 295 (667)
|+.+-+..+++. .|..++. ...+.+ ...+..++......+.+.+.+.|..++... ..+.+...++.|+.+-
T Consensus 159 ~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 234 (285)
T 1wdy_A 159 GHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234 (285)
T ss_dssp TCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 665544443332 1333322 122222 223334555555667777777776655431 2234445556677776
Q ss_pred HHHHHh
Q 005969 296 AHLCFS 301 (667)
Q Consensus 296 a~~~~~ 301 (667)
+..+++
T Consensus 235 v~~Ll~ 240 (285)
T 1wdy_A 235 VQRLLE 240 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666665
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.40 E-value=13 Score=26.78 Aligned_cols=78 Identities=6% Similarity=-0.159 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHh
Q 005969 156 DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSV 235 (667)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 235 (667)
.-++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++.. .+.|.-+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555555443 22333334456677899999999999999999999887765 477777888777777776
Q ss_pred CC
Q 005969 236 DI 237 (667)
Q Consensus 236 ~g 237 (667)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.79 E-value=13 Score=26.70 Aligned_cols=78 Identities=13% Similarity=-0.041 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHh
Q 005969 156 DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSV 235 (667)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 235 (667)
.-++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++.. .+.|.-+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555554442 22233333455667889999999988888888888877765 456777777776766665
Q ss_pred CC
Q 005969 236 DI 237 (667)
Q Consensus 236 ~g 237 (667)
.|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.82 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.39 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.85 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.83 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.82 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.79 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.77 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.73 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.59 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.57 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.57 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.38 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.34 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.33 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.3 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.06 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.02 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.95 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.9 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.9 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.88 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.85 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.85 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.83 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.67 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.63 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.4 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.39 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.37 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.34 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.33 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.08 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.08 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.02 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.88 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.82 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.67 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.54 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.47 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.45 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.27 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.13 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.55 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.34 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.21 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.06 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.72 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.38 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.16 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 84.25 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.61 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=9.9e-18 Score=164.19 Aligned_cols=372 Identities=12% Similarity=0.057 Sum_probs=201.3
Q ss_pred HHHHccCChhHHHHHHHHhHhCCcCC-ChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 005969 215 GALAESENFGKALELYLRMSVDIVFP-NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNL 293 (667)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (667)
..+.+.|++++|.+.|+++.+. .| +...+..+...+...|++++|...++.+.+..+. +..++..+..+|.+.|++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 3445556666666666666543 23 2344444555556666666666666666555322 445566666667777777
Q ss_pred HHHHHHHhccCCCCc---ccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcC
Q 005969 294 EGAHLCFSEISNKNI---VSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGY 369 (667)
Q Consensus 294 ~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 369 (667)
++|.+.+....+.+. ..+..........+... ...................
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 138 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR------------------------- 138 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHH-------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------------------
Confidence 777766665543111 11111111122222222 2222222222211111111
Q ss_pred cchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHc
Q 005969 370 ENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHN 449 (667)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 449 (667)
..........+....+...+... +. ....+...+..+...+...
T Consensus 139 -------~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~-~~~~~~~~~~~l~~~~~~~ 182 (388)
T d1w3ba_ 139 -------SDLGNLLKALGRLEEAKACYLKA----------------------------IE-TQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp -------HHHHHHHHTTSCHHHHHHHHHHH----------------------------HH-HCTTCHHHHHHHHHHHHTT
T ss_pred -------ccccccccccchhhhhHHHHHHh----------------------------hc-cCcchhHHHHhhccccccc
Confidence 12223333444444444433221 00 0012233444455555666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 005969 450 GDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 529 (667)
|++++|...+++..+.. +-+...+..+...+...|++++|...++...... +.....+..+...+.+.|++++|...
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 259 (388)
T d1w3ba_ 183 GEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh--hhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666665532 2234456666666666677777777666666654 22455666666666777777777777
Q ss_pred HHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC
Q 005969 530 FNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVE 606 (667)
Q Consensus 530 ~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (667)
|++.. .| +..++..+...+...|++++|++.++..... .+.+...+..+...+...|++++|.+.+++..+. .+
T Consensus 260 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p 336 (388)
T d1w3ba_ 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FP 336 (388)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CC
Confidence 76554 23 3456666667777777777777777766664 2344556666677777777777777777766322 22
Q ss_pred CCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 005969 607 PEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPN-ALIWRTFLEGCQRCRI 656 (667)
Q Consensus 607 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~ 656 (667)
-+..++..+..++.+.|++++|.+.+++. .+.|+ ...|..+...+.+.||
T Consensus 337 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 23455666777777777777777777665 34553 5666666666666554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.4e-17 Score=160.30 Aligned_cols=344 Identities=11% Similarity=0.021 Sum_probs=254.6
Q ss_pred HhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHhcCCChH-H
Q 005969 251 SCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN--K-NIVSWNALILGYASKSSPT-S 326 (667)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~-a 326 (667)
.+.+.|++++|.+.++++.+..+ -+...+..+..+|.+.|++++|...|++..+ | +..+|..+...+.+.|+.+ |
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccc
Confidence 34566888888888888877643 2566777788888888888888888877654 2 3345555666666666666 6
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcc
Q 005969 327 IFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVV 406 (667)
Q Consensus 327 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 406 (667)
+..+............
T Consensus 87 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 102 (388)
T d1w3ba_ 87 IEHYRHALRLKPDFID---------------------------------------------------------------- 102 (388)
T ss_dssp HHHHHHHHHHCTTCHH----------------------------------------------------------------
T ss_pred cccccccccccccccc----------------------------------------------------------------
Confidence 6666655543222211
Q ss_pred hhHHHHHHHhhcCChhHHHHHHhcC---CCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005969 407 PANIIAGIYNRTGQYNETVKLLSQL---ERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSK 483 (667)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 483 (667)
............+....+....... ..................+....+...+....... +-+...+..+...+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 181 (388)
T d1w3ba_ 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccc
Confidence 1111111122222222222122211 12344444555566667788888888888877653 3456678888888999
Q ss_pred cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHH
Q 005969 484 LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEK 560 (667)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~ 560 (667)
.|+.+.|...++...+.. |.+...+..+...+...|++++|...++... ..+...+..+...+...|++++|++.
T Consensus 182 ~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 259 (388)
T d1w3ba_ 182 QGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998875 5478889999999999999999999999876 34666788889999999999999999
Q ss_pred HHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCC
Q 005969 561 FREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFP 638 (667)
Q Consensus 561 ~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~ 638 (667)
|++..+. .|+ ..++..+...+...|++++|.+.++..... .+.+...+..+..++.+.|++++|.+.+++. ...
T Consensus 260 ~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 335 (388)
T d1w3ba_ 260 YRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999984 564 668899999999999999999999998554 5667788899999999999999999999986 455
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 639 P-NALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 639 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
| +..+|..+...+...|+.+.|...+++
T Consensus 336 p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 364 (388)
T d1w3ba_ 336 PEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 477888999999999999999887765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.6e-11 Score=113.36 Aligned_cols=219 Identities=14% Similarity=0.096 Sum_probs=155.8
Q ss_pred HHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChh
Q 005969 379 LMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYK 453 (667)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 453 (667)
....+.+.|++++|...|+.. ..|.+...+..+..++...|++++|...|.+..+ .+...|..+...|...|+++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 456678999999999999987 5666777888889999999999999999887653 34567777888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH
Q 005969 454 EVLELFKYMRAARIYPDNYT----------------FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY 517 (667)
Q Consensus 454 ~A~~~~~~m~~~g~~p~~~~----------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 517 (667)
+|.+.+++.... .|+... ....+..+...+....+...+....+......++..+..+...+
T Consensus 105 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 105 QACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999988764 232111 11111222334455666677776666554444566677777777
Q ss_pred HhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHH
Q 005969 518 GKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGM 593 (667)
Q Consensus 518 ~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~ 593 (667)
...|++++|...|+... .| +...|..+...|...|++++|++.|++..+. .|+ ..++..+..+|.+.|++++|+
T Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHH
Confidence 77788888877777655 33 4556777777777788888888888777764 453 556777777777778888887
Q ss_pred HHHHHhHH
Q 005969 594 ELFERMNR 601 (667)
Q Consensus 594 ~~~~~~~~ 601 (667)
+.|++..+
T Consensus 261 ~~~~~al~ 268 (323)
T d1fcha_ 261 EHFLEALN 268 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777644
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.8e-10 Score=108.40 Aligned_cols=250 Identities=10% Similarity=0.020 Sum_probs=190.4
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLER--P-DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC 485 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 485 (667)
-.....+.+.|++++|+..|++..+ | +...|..+...+...|++++|...+.+..+.. +-+...+..+...+...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3456678899999999999998763 3 45678889999999999999999999998753 335678888889999999
Q ss_pred ChhhHHHHHHHHHHhCCCCCch-------------hHHhHHHHHHHhcCChHHHHHHHHhcC--CC---ChhhHHHHHHH
Q 005969 486 NLALGSSLHGLIKKTEIISSDT-------------FVCNMLIDMYGKCGSIGSSVKIFNEMT--DR---NVITWTALISA 547 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~---~~~~~~~li~~ 547 (667)
+++.|.+.++............ ......+..+...+...+|...+.... .| +...+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999999988764221000 011112223344566777888877655 23 45678888899
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChH
Q 005969 548 LGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLK 626 (667)
Q Consensus 548 ~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 626 (667)
+...|++++|+..+++.... .| +..+|..+...|...|++++|.+.+++..+. -+-+...+..++.+|.+.|+++
T Consensus 182 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999885 45 4678899999999999999999999998654 2334567889999999999999
Q ss_pred HHHHHHHhCC-------------CCCCHHHHHHHHHHHHhcCChhHHhhh
Q 005969 627 EAEKIITTMP-------------FPPNALIWRTFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 627 ~A~~~~~~m~-------------~~p~~~~~~~l~~~~~~~~~~~~a~~~ 663 (667)
+|.+.|++.- .......|..+-.++...|+.+....+
T Consensus 258 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 258 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999998751 222345677777777777776655443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.4e-07 Score=87.09 Aligned_cols=185 Identities=10% Similarity=0.062 Sum_probs=95.2
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCC--C-CcchHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLER--P-DIVSWNIVIAACAHNG-DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKL 484 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 484 (667)
+.+..++.+.+.+++|++.++++.+ | +...|+.....+...| ++++|+..+++..+.. +-+..+|..+...+.+.
T Consensus 47 ~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l 125 (315)
T d2h6fa1 47 DYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWL 125 (315)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhh
Confidence 3444455555666666666665553 2 2234444444555444 3566666666655532 22344555555556666
Q ss_pred CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCC------hH
Q 005969 485 CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGF------AQ 555 (667)
Q Consensus 485 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~------~~ 555 (667)
|+.++|.+.++.+.+.. |.+...|..+...+...|++++|.+.++.+. +| +...|+.+...+.+.+. ++
T Consensus 126 ~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~ 203 (315)
T d2h6fa1 126 RDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 203 (315)
T ss_dssp TCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred ccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhH
Confidence 66666666666665553 3355566666666666666666666666555 22 34445544444443333 34
Q ss_pred HHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 556 RALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
+|++.+.+..+. .| +...|+.+...+... ..+++.+.++..
T Consensus 204 ~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~ 245 (315)
T d2h6fa1 204 REVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQL 245 (315)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHH
T ss_pred HhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHH
Confidence 555555555553 33 344444444443332 245555555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.2e-07 Score=90.12 Aligned_cols=285 Identities=11% Similarity=0.014 Sum_probs=199.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc--CCCCCc-----chhHHHHHHHhhcCChhHHHHHHhcCCC-----CC----cchHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTAL--NIPRAV-----VPANIIAGIYNRTGQYNETVKLLSQLER-----PD----IVSWNI 441 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~--~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~ 441 (667)
.....+...|++++|.+++++. ..|.+. ..+..+..++...|++++|...+++..+ ++ ...+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3456678899999999999987 233322 2456677889999999999999987652 22 234555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH----cCCCCC---HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCC---CchhHHh
Q 005969 442 VIAACAHNGDYKEVLELFKYMRA----ARIYPD---NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIIS---SDTFVCN 511 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~----~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 511 (667)
+...+...|++..+...+.+... .+..+. ...+..+...+...|+++.+...+.......... .....+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 66778889999999999887653 222221 2345566677889999999999998887754322 1334555
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC-------CC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HhHHHH
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMT-------DR---NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD---RVALIA 578 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~-------~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~~~ 578 (667)
.+...+...++...+...+.... .. ....+..+...+...|+.++|...+++........+ ...+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 66677788888888877776544 11 123456667788899999999999998766432222 335667
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHh---hCCCCC-cchhHHHHHHHhhcCChHHHHHHHHhC-------CCC----CCHHH
Q 005969 579 VLTACRHGGLVREGMELFERMNRS---YGVEPE-MDHYHCVVDLLVRYGHLKEAEKIITTM-------PFP----PNALI 643 (667)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m-------~~~----p~~~~ 643 (667)
+..++...|++++|...+++.... .+..|+ ...+..+..+|.+.|++++|.+.+++. +.. -....
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~ 336 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 336 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 888999999999999999987432 233343 356788899999999999999998765 111 12334
Q ss_pred HHHHHHHHHhcCChhHHhh
Q 005969 644 WRTFLEGCQRCRIAKYDTL 662 (667)
Q Consensus 644 ~~~l~~~~~~~~~~~~a~~ 662 (667)
...++..+...+..+++++
T Consensus 337 ~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 337 MAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhcCCChHHHH
Confidence 5556677777777666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2.2e-07 Score=85.72 Aligned_cols=206 Identities=9% Similarity=-0.006 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCC-hhHHHHHHhcCCC---CCcchHHHHHHHHH
Q 005969 374 YVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQ-YNETVKLLSQLER---PDIVSWNIVIAACA 447 (667)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li~~~~ 447 (667)
..++.+...+.+.+..++|+++++.+ -.|.+...++....++...|+ +++|+..++...+ .+..+|..+...+.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 45566666778888889999998888 566667777888888877664 8889888887653 45567888888888
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC-----
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS----- 522 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 522 (667)
+.|++++|+..++++.+.. +-+...|..+...+...|+++.|.+.++.+.+.+ |.+...|+.+...+.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHccccchhh
Confidence 8999999999999988753 3457788888888888999999999999988875 4467777777776666555
Q ss_pred -hHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHH
Q 005969 523 -IGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTAC 583 (667)
Q Consensus 523 -~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~ 583 (667)
+++|...+.... .| +...|+.+...+.. ...+++.+.++...+....+ +...+..++..|
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 567777777665 34 56667766655544 44677788888777642222 233444454444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=8.3e-07 Score=83.96 Aligned_cols=192 Identities=11% Similarity=0.006 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC-----chh
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARI----YPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISS-----DTF 508 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~ 508 (667)
.+..+...+...|+++.+...+........ .....++......+...++...+...+........... ...
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 345566778889999999999988776432 22334556666677788899888888877665422111 123
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHH----cCCCCC-HhHH
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTDR-------NVITWTALISALGLNGFAQRALEKFREMEF----LGFKPD-RVAL 576 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~g~~p~-~~~~ 576 (667)
.+..+...+...|++++|...++...+. ....+..+...+...|++++|...+++... .+..|+ ..++
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 4566777888999999999999987631 123556678899999999999999998764 344554 3477
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHh---hCCCC----CcchhHHHHHHHhhcCChHHHH
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRS---YGVEP----EMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
..+...|...|++++|.+.+++...- .|... ....+..++..+...++.+++.
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 88889999999999999999986432 23221 1123444555666666666554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=2.2e-07 Score=85.81 Aligned_cols=183 Identities=14% Similarity=0.068 Sum_probs=117.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHH
Q 005969 451 DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIF 530 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 530 (667)
..++|..+|++..+...+-+...+...+....+.|+.+.|..+++.+.+..... ....|...+....+.|+.+.|.++|
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~-~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-THHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHcCChHHHHHHH
Confidence 346677777777655434445566666666777777777777777776543221 2345677777777777777787777
Q ss_pred HhcCC--C-ChhhHHHHHHH-HHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC
Q 005969 531 NEMTD--R-NVITWTALISA-LGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVE 606 (667)
Q Consensus 531 ~~~~~--~-~~~~~~~li~~-~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (667)
+.+.+ | +...|...... +...|+.+.|..+|+++.+. .+.+...|...+..+.+.|+++.|..+|++..+..+..
T Consensus 158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 77653 2 22233222222 23356777788888877775 23345677777777778888888888888776554444
Q ss_pred CCc--chhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 607 PEM--DHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 607 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
|.. ..|...+..-.+.|+.+.+.++.+++
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 35666677667778888887777766
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.73 E-value=7.8e-07 Score=81.92 Aligned_cols=195 Identities=12% Similarity=0.060 Sum_probs=144.2
Q ss_pred ChhHHHHHHhcCCC----CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 005969 420 QYNETVKLLSQLER----PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHG 495 (667)
Q Consensus 420 ~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 495 (667)
..++|..+|++..+ .+...|...+....+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34666777776542 33456777788888899999999999999875433334578888899999999999999999
Q ss_pred HHHHhCCCCCchhHHhHHHHH-HHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CC
Q 005969 496 LIKKTEIISSDTFVCNMLIDM-YGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLG-FK 570 (667)
Q Consensus 496 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g-~~ 570 (667)
.+.+... .+...|...... +...|+.+.|..+|+.+.+ .+...|...+..+...|+.++|..+|++..+.. ..
T Consensus 159 ~al~~~~--~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTT--CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCC--CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 9887753 344555444443 3446889999999998873 356788999999999999999999999988753 34
Q ss_pred CC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 571 PD--RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 571 p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
|+ ...|...+..-...|+.+.+.++++++.+.++-.++......++
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 284 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLV 284 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccchHHHHH
Confidence 43 34788888877788999999999999866644444444333333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=3.7e-07 Score=81.96 Aligned_cols=92 Identities=14% Similarity=-0.030 Sum_probs=50.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhH
Q 005969 377 GSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKE 454 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 454 (667)
..+...|.+.|++++|.+.|++. ..|. ++.+|..+..+|.+.|++++
T Consensus 41 ~~~G~~y~~~g~~~~A~~~~~~al~l~p~-------------------------------~~~a~~~lg~~~~~~g~~~~ 89 (259)
T d1xnfa_ 41 YERGVLYDSLGLRALARNDFSQALAIRPD-------------------------------MPEVFNYLGIYLTQAGNFDA 89 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhccCCC-------------------------------CHHHHhhhchHHHHHHHHHH
Confidence 35566777777777777766654 2233 33445555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 455 VLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 455 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
|+..|++..+.. +-+..++..+..++...|+.+.|...++...+.
T Consensus 90 A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 90 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 555555555532 112334445555555555555555555555554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=1.2e-06 Score=78.39 Aligned_cols=198 Identities=8% Similarity=-0.129 Sum_probs=135.8
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
.+|..+...|.+.|++++|+..|++..+.. +-+..+|..+..++.+.|+++.|...|+++.+.. |.+...+..+...
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHH
Confidence 456677888999999999999999998853 3356789999999999999999999999999985 4467889999999
Q ss_pred HHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC----H
Q 005969 517 YGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGL----V 589 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~----~ 589 (667)
|...|++++|...|+... .| +......+..++...+..+.+..+....... .++...+. ++..+..... .
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhh-HHHHHHHHHHHHHHH
Confidence 999999999999999876 34 3333333444555555555555555555553 33322222 2233322222 2
Q ss_pred HHHHHHHHHhHHhhCCCCC-cchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH
Q 005969 590 REGMELFERMNRSYGVEPE-MDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALI 643 (667)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 643 (667)
+.+...+.... ...|+ ..+|..+...+...|++++|.+.|++. ...|+...
T Consensus 192 ~~~~~~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 244 (259)
T d1xnfa_ 192 ERLKADATDNT---SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244 (259)
T ss_dssp HHHHHHCCSHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHHhh---hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 22222222111 11122 245777899999999999999999986 46676433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.57 E-value=3.4e-08 Score=92.79 Aligned_cols=275 Identities=8% Similarity=-0.063 Sum_probs=180.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc-C-CCCCcchhHHHHHH----------HhhcCChhHHHHHHhcCCC---CCcchHHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTAL-N-IPRAVVPANIIAGI----------YNRTGQYNETVKLLSQLER---PDIVSWNIV 442 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 442 (667)
.+.....+.+..++|+++++.. . .|.+...++..-.. +...+++++|...++...+ .+...|..+
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~ 113 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 113 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHh
Confidence 3444444445558899888877 3 33333344332222 2233456778888777653 344456666
Q ss_pred HHHHHHcC--ChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh
Q 005969 443 IAACAHNG--DYKEVLELFKYMRAARIYPDNYTFV-SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK 519 (667)
Q Consensus 443 i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (667)
..++...+ ++++|...+.++.+.. +++...+. .....+...+..+.|...++.+.+.+ |.+...|..+...+..
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHH
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 66666654 4788888888888753 33455443 34456667888889998888887775 4478888888888888
Q ss_pred cCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 520 CGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 520 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.|++++|...++...+-..... .+...+...+..+++...+....... +++...+..+...+...|++++|...+.+.
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888877665554442211111 22334455566777888888877752 334556667777788889999999998877
Q ss_pred HHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhH
Q 005969 600 NRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPN-ALIWRTFLEGCQRCRIAKY 659 (667)
Q Consensus 600 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~~~~~~ 659 (667)
... -+.+...+..++.++.+.|++++|.+.+++.. +.|+ ..-|+.|-..+........
T Consensus 269 ~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~~~ 328 (334)
T d1dcea1 269 EPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK 328 (334)
T ss_dssp CTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred Hhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHHHH
Confidence 433 23345677889999999999999999999883 5664 5666777666665444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=9.3e-06 Score=68.08 Aligned_cols=120 Identities=8% Similarity=-0.058 Sum_probs=89.6
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHH
Q 005969 514 IDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 592 (667)
...+...|++++|.+.|.++.+|+..+|..+..+|...|++++|++.|++.++. .| +...|..+..+|.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 455667788888888888888888888888888888888888888888888884 45 466788888888888888888
Q ss_pred HHHHHHhHHhhC-----------CCCC---cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 593 MELFERMNRSYG-----------VEPE---MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 593 ~~~~~~~~~~~~-----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
...|++...... .... ..++..+..++.+.|++++|.+.+++.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888887643211 0000 133456677788888888888888766
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=2.4e-05 Score=70.81 Aligned_cols=201 Identities=6% Similarity=-0.071 Sum_probs=131.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhC----CCCCchhHH
Q 005969 440 NIVIAACAHNGDYKEVLELFKYMRAA----RIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTE----IISSDTFVC 510 (667)
Q Consensus 440 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~ 510 (667)
......|...|++++|...|.+..+. +-+++ ..+|..+..+|.+.|++++|.+.++...+.. .......++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 33466777788888888888776542 21222 3477788888888999999988888765532 111124455
Q ss_pred hHHHHHHHh-cCChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH------h
Q 005969 511 NMLIDMYGK-CGSIGSSVKIFNEMTD-----RN----VITWTALISALGLNGFAQRALEKFREMEFLGFKPDR------V 574 (667)
Q Consensus 511 ~~l~~~~~~-~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~------~ 574 (667)
..+...|.. .|++++|.+.++...+ .+ ..++..+...+...|++++|++.|++.......... .
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 666666644 5899999998887652 11 235777889999999999999999998874211111 1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc---chhHHHHHHHhh--cCChHHHHHHHHhCCCCCCH
Q 005969 575 ALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM---DHYHCVVDLLVR--YGHLKEAEKIITTMPFPPNA 641 (667)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~p~~ 641 (667)
.+...+..+...|+++.|...+++..+...-.++. .....++.++.. .+.+++|+..|+++. +-|.
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~-~lD~ 271 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM-RLDK 271 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS-CCCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hcCH
Confidence 23445556778899999999999874331111222 244566666654 345889999998875 3344
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=5.8e-06 Score=75.12 Aligned_cols=197 Identities=8% Similarity=-0.051 Sum_probs=85.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC----CCcC-ChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCC-----CchHHHH
Q 005969 111 SIVSIFGKHGFVEDCMFLFCELVRS----EVAL-TESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFD-----YELLVAN 180 (667)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~ 180 (667)
.....|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|...++...+.... ....++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 3444555555555555555554331 1111 1124444555555555555555555544332110 0122333
Q ss_pred HHHHHHHh-cCChhHHHHhhccCCC-----C----CchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCCh------hh
Q 005969 181 SLVNMYFQ-CAGIWSAEKMFKDVEI-----R----DVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQ------TT 244 (667)
Q Consensus 181 ~l~~~~~~-~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~t 244 (667)
.+...|.. .|++++|.+.+++... . -..++..+...+...|++++|++.|++.......... ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 34444432 3555555555544321 0 0123555566666666666666666665543211110 01
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCC-C---chHHHHHHHHHHh--cCChHHHHHHHhccCCCC
Q 005969 245 FVYVINSCAGLQNSILGKSIHAKVIKNALEC-D---VFVGSALVDFYAK--CDNLEGAHLCFSEISNKN 307 (667)
Q Consensus 245 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~ 307 (667)
+......+...|+.+.|...++...+..+.. + ......++.++.. .+.+++|...|+++.+-|
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 1122223344555666655555554332111 1 1123344444433 234566666666555444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.30 E-value=5e-07 Score=84.54 Aligned_cols=112 Identities=8% Similarity=-0.067 Sum_probs=54.1
Q ss_pred ChhHHHHhhccCCC--C-CchhHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCcCChhhHH-HHHHHhcccCchHHHHHH
Q 005969 90 CLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHG--FVEDCMFLFCELVRSEVALTESSFV-GVIHGLSNEQDLEFGEQI 163 (667)
Q Consensus 90 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~ 163 (667)
++++|+.+++...+ | +...|..+..++...+ ++++|+..++.+.+.. +++...+. .....+...+..+.|...
T Consensus 88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHH
Confidence 34555555554432 2 3334444444444433 3455666666655532 12223222 222344445555555555
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC
Q 005969 164 HGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
++..++.+ +-+...|+.+..++.+.|++++|...++...
T Consensus 167 ~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (334)
T d1dcea1 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205 (334)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 55555443 2345556666666666666666655554443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=2.2e-05 Score=59.44 Aligned_cols=92 Identities=16% Similarity=0.016 Sum_probs=52.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcC
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYG 623 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 623 (667)
...+...|++++|+..|++.++. .| +...|..+..+|...|++++|+..+++..+. -+.++..|..+..++...|
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHcc
Confidence 34455566666666666666553 33 3445566666666666666666666665433 2344455666666666666
Q ss_pred ChHHHHHHHHhC-CCCCC
Q 005969 624 HLKEAEKIITTM-PFPPN 640 (667)
Q Consensus 624 ~~~~A~~~~~~m-~~~p~ 640 (667)
++++|...+++. ...|+
T Consensus 86 ~~~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEAN 103 (117)
T ss_dssp CHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 666666666555 24444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=6e-05 Score=62.96 Aligned_cols=115 Identities=11% Similarity=0.019 Sum_probs=55.1
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
...|+++.|++.|.++ .+|+..++..+..++...|+++.|.+.|++..+.. |..+..|..+..+|.+.|++++|
T Consensus 16 ~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHHHH
Confidence 3344444444444332 12333444444444444444444444444444432 22344444444444444444444
Q ss_pred HHHHHhcCC---C----------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 527 VKIFNEMTD---R----------------NVITWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 527 ~~~~~~~~~---~----------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
.+.|+.... + ...++..+..++...|++++|.+.+++..+.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 444443210 0 0123445566677777788887777777664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=0.0021 Score=57.96 Aligned_cols=125 Identities=10% Similarity=0.134 Sum_probs=62.1
Q ss_pred HHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHH
Q 005969 182 LVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILG 261 (667)
Q Consensus 182 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 261 (667)
+.+.|.+.|.++.|..+|..+. .|..++..+.+.++++.|.+++.+. -+..+|..+...|........+
T Consensus 20 i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la 88 (336)
T d1b89a_ 20 VGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 88 (336)
T ss_dssp ---------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH
Confidence 3444445555555555555443 3555556666666666666655433 1344555555555554433222
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCC
Q 005969 262 KSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKS 322 (667)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~ 322 (667)
.+.......+......++..|-..|.+++...+++.... .+...++-++..|++.+
T Consensus 89 -----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 89 -----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp -----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 111222233444445666677777777777777765432 34455666776666654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=3.7e-05 Score=62.17 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=45.4
Q ss_pred HHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVR 590 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~ 590 (667)
..|.+.|++++|...|++.. .| +...|..+..+|...|++++|+..|++.++. .|+ ...|..+..++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHHcCCHH
Confidence 34445555555555555544 22 3445555555555556666666666655553 333 345555555555666666
Q ss_pred HHHHHHHHhH
Q 005969 591 EGMELFERMN 600 (667)
Q Consensus 591 ~A~~~~~~~~ 600 (667)
+|...+++..
T Consensus 96 eA~~~~~~a~ 105 (159)
T d1a17a_ 96 AALRDYETVV 105 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655553
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=7.9e-05 Score=56.24 Aligned_cols=82 Identities=17% Similarity=0.082 Sum_probs=36.8
Q ss_pred HHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGM 593 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 593 (667)
+...|++++|...|+... .| +...|..+..+|...|++++|+..+++..+.+ +.+...|..+..++...|++++|+
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~ 91 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAK 91 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHHH
Confidence 334444444444444433 12 33344444444444455555555555544431 223344444444555555555555
Q ss_pred HHHHHh
Q 005969 594 ELFERM 599 (667)
Q Consensus 594 ~~~~~~ 599 (667)
..+++.
T Consensus 92 ~~~~~a 97 (117)
T d1elwa_ 92 RTYEEG 97 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.95 E-value=2.2e-05 Score=66.68 Aligned_cols=96 Identities=7% Similarity=-0.141 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHH
Q 005969 469 PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALI 545 (667)
Q Consensus 469 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li 545 (667)
|+...+......+.+.|+++.|...|+++.+.. |.++..|..+..+|.+.|++++|...|+...+ | +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 666677777778888888888888888888775 55778888888888888888888888887763 4 455777888
Q ss_pred HHHHhCCChHHHHHHHHHHHH
Q 005969 546 SALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 546 ~~~~~~~~~~~A~~~~~~~~~ 566 (667)
.+|...|++++|+..|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888766
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=7.7e-05 Score=60.17 Aligned_cols=103 Identities=10% Similarity=-0.038 Sum_probs=84.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHh
Q 005969 542 TALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLV 620 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 620 (667)
......|.+.|++++|+..|++..+. .| +...|..+..+|...|++++|...|++..+. .+-+...|..++.++.
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHH
Confidence 34567788999999999999999995 55 5678899999999999999999999999655 3445578999999999
Q ss_pred hcCChHHHHHHHHhCC-CCCC-HHHHHHHH
Q 005969 621 RYGHLKEAEKIITTMP-FPPN-ALIWRTFL 648 (667)
Q Consensus 621 ~~g~~~~A~~~~~~m~-~~p~-~~~~~~l~ 648 (667)
..|++++|.+.+++.. ..|+ ...+..+.
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~ 119 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQ 119 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999883 4454 44444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=0.0075 Score=54.19 Aligned_cols=189 Identities=10% Similarity=0.035 Sum_probs=90.5
Q ss_pred hhhhHHHHHHHHHhhCCHHHHHHHHHhc-C-CCCCcchhHHHHHHHhhcCChhHHHHHHhcCC-CC----------Ccch
Q 005969 372 YEYVLGSLMTSYAKSGLISDALAFVTAL-N-IPRAVVPANIIAGIYNRTGQYNETVKLLSQLE-RP----------DIVS 438 (667)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~----------~~~~ 438 (667)
++.....++..|...|.+++...+++.. + .+.+...++.++..|++.+ .++..+.+.... .- ....
T Consensus 98 ~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l 176 (336)
T d1b89a_ 98 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHL 176 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCC
Confidence 3444456777888888888888887765 2 3444455666666666643 333333333321 11 1112
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
|.-++-.|.+.|+++.|..+. .+ -.++..-....+..+.+..+.+...++.....+. .+...+.|+....
T Consensus 177 ~~elv~Ly~~~~~~~~A~~~~---i~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~-----~p~~i~~lL~~v~ 246 (336)
T d1b89a_ 177 WAELVFLYDKYEEYDNAIITM---MN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-----KPLLLNDLLMVLS 246 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH---HH--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-----CGGGHHHHHHHHG
T ss_pred hHHHHHHHHhcCCHHHHHHHH---HH--cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc-----CHHHHHHHHHHhc
Confidence 333333344444444443332 11 1223333334444455555555444444444332 1223333443333
Q ss_pred hcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHH
Q 005969 519 KCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 592 (667)
..-+..+..+ .+.+.+++.-...+++...+.| +....+.|...|...+|++.-
T Consensus 247 ~~~d~~r~V~------------------~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l 299 (336)
T d1b89a_ 247 PRLDHTRAVN------------------YFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQAL 299 (336)
T ss_dssp GGCCHHHHHH------------------HHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHH------------------HHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHH
Confidence 3333333333 3334455555555555554433 335666677777777765443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.88 E-value=4.6e-05 Score=64.59 Aligned_cols=127 Identities=8% Similarity=-0.085 Sum_probs=97.2
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHH
Q 005969 505 SDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVL 580 (667)
Q Consensus 505 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li 580 (667)
|+...+......|.+.|++++|...|+... .| +...|..+..+|.+.|++++|+..|++..+ +.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHH
Confidence 467777788999999999999999999876 44 667899999999999999999999999987 4675 66899999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 581 TACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+|...|++++|...|++...-. +.+...+...+..+.+.+....+.......
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 132 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNSIEERR 132 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999875431 111223444455555554445554444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=1.6e-05 Score=60.42 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=53.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC---HHHHHHHHHHhHHhhCCCCC-cchhHHHHHH
Q 005969 543 ALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGL---VREGMELFERMNRSYGVEPE-MDHYHCVVDL 618 (667)
Q Consensus 543 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 618 (667)
.+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|..+++++... ...|+ ..++..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHH
Confidence 45555566666666666666666642 3344566666666655433 33466666655322 11121 1245566666
Q ss_pred HhhcCChHHHHHHHHhC-CCCCCHHH
Q 005969 619 LVRYGHLKEAEKIITTM-PFPPNALI 643 (667)
Q Consensus 619 ~~~~g~~~~A~~~~~~m-~~~p~~~~ 643 (667)
|.+.|++++|.+.|++. .+.|+..-
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence 66666666666666665 34454433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.85 E-value=4.8e-05 Score=56.95 Aligned_cols=87 Identities=6% Similarity=-0.149 Sum_probs=49.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
+...+.+.|++++|+..|++..+. .| +...|..+..++.+.|++++|...+++..+- .+.+...+..+...|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHC
Confidence 344455566666666666666553 34 3445666666666666666666666665333 233345555666666666
Q ss_pred CChHHHHHHHHh
Q 005969 623 GHLKEAEKIITT 634 (667)
Q Consensus 623 g~~~~A~~~~~~ 634 (667)
|++++|.+.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.83 E-value=0.0011 Score=58.58 Aligned_cols=216 Identities=8% Similarity=0.013 Sum_probs=122.0
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhh----cCChhHHHHHHhcCCC-CCcchHHHHHHHHHH
Q 005969 374 YVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNR----TGQYNETVKLLSQLER-PDIVSWNIVIAACAH 448 (667)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~ 448 (667)
..+..|...+.+.++.++|.+.|++.-...+...+..+...|.. ..+...+...+....+ .+......+...+..
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~ 82 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYS 82 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccccc
Confidence 34446667778889999999988887434455555556665554 4566667766666543 233334444333332
Q ss_pred ----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh-
Q 005969 449 ----NGDYKEVLELFKYMRAARIYPDNYTFVSLLSAC----SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK- 519 (667)
Q Consensus 449 ----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 519 (667)
..+.+.|...++...+.|.... ...+...+ ........+...+......+ +...+..|...|..
T Consensus 83 ~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 83 GQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAG 155 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHT
T ss_pred ccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhccc----ccchhhhhhhhhccC
Confidence 3456677777777766553221 11121111 12334455555555554443 55566666666654
Q ss_pred ---cCChHHHHHHHHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cC
Q 005969 520 ---CGSIGSSVKIFNEMTD-RNVITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH----GG 587 (667)
Q Consensus 520 ---~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g 587 (667)
..+...+...++...+ .+......+...|.. ..+.++|+.+|++..+.| ++..+..|...|.+ ..
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSC
T ss_pred CCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCcc
Confidence 3455566666665543 355555555555544 456777777777777765 34444555555543 33
Q ss_pred CHHHHHHHHHHh
Q 005969 588 LVREGMELFERM 599 (667)
Q Consensus 588 ~~~~A~~~~~~~ 599 (667)
+.++|.++|++.
T Consensus 233 n~~~A~~~~~kA 244 (265)
T d1ouva_ 233 NEKQAIENFKKG 244 (265)
T ss_dssp CSTTHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666677777666
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00018 Score=54.43 Aligned_cols=94 Identities=12% Similarity=-0.065 Sum_probs=55.1
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC---hHHHHHHHHhcCC--CCh---hhHHHHHHH
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS---IGSSVKIFNEMTD--RNV---ITWTALISA 547 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~--~~~---~~~~~li~~ 547 (667)
.+++.+...+++++|.+.|+.....+ |.++.++..+..++.+.++ .++|..+++++.+ |+. .+|..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 45555556666666666666666654 4355666666666655443 3346666666553 211 245556666
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCH
Q 005969 548 LGLNGFAQRALEKFREMEFLGFKPDR 573 (667)
Q Consensus 548 ~~~~~~~~~A~~~~~~~~~~g~~p~~ 573 (667)
|.+.|++++|++.|+++.+ +.|+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~ 105 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQN 105 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCC
Confidence 6677777777777777666 35543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.67 E-value=0.00019 Score=53.49 Aligned_cols=88 Identities=9% Similarity=-0.068 Sum_probs=56.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
....+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|+++.|...++.+.+.. |.+...+..+...|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCC
Confidence 4455666777777777777766643 2245566666666777777777777777766664 445666666666666666
Q ss_pred ChHHHHHHHHh
Q 005969 522 SIGSSVKIFNE 532 (667)
Q Consensus 522 ~~~~A~~~~~~ 532 (667)
+.++|.+.+++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66666666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.0002 Score=55.01 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-----cchhHHHH
Q 005969 542 TALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-----MDHYHCVV 616 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~ 616 (667)
..+...+...|++++|++.|++.++.+ +.+...+..+..+|.+.|++++|...+++++.-..-.+. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345556666666677777766666642 224556666666666677777777666665432111111 12455555
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 005969 617 DLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~m 635 (667)
..+...+++++|.+.+++.
T Consensus 87 ~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 5666666677777666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.58 E-value=0.016 Score=50.60 Aligned_cols=216 Identities=9% Similarity=-0.025 Sum_probs=139.7
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCCC-CCcchHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLER-PDIVSWNIVIAACAH----NGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 480 (667)
..+..+...+...+++++|++.|++..+ -+...+..|...|.. ..+...|...+......+ +......+...
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~ 79 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 79 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccccc
Confidence 3445566677788899999999988763 455566666666665 557888888888887765 22222333222
Q ss_pred H----hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh----cCChHHHHHHHHhcC-CCChhhHHHHHHHHHh-
Q 005969 481 C----SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK----CGSIGSSVKIFNEMT-DRNVITWTALISALGL- 550 (667)
Q Consensus 481 ~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~- 550 (667)
+ ....+.+.|...++...+.|. ......+...+.. ......+...+.... ..+...+..|...|..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~----~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKY----AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccchhhHHHHHHHhhhhhhhh----hhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccC
Confidence 2 235677888888888877762 2333333333332 344666666666544 4566777778777775
Q ss_pred ---CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhh--
Q 005969 551 ---NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH----GGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVR-- 621 (667)
Q Consensus 551 ---~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 621 (667)
..+...+..+++...+.| +......|...|.. ..++++|..+|++..+. | ++..+..|...|.+
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g---~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGE 228 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTS
T ss_pred CCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc-c---CHHHHHHHHHHHHcCC
Confidence 345677888888877754 55555556555554 56889999999888443 4 34566667777764
Q ss_pred --cCChHHHHHHHHhC
Q 005969 622 --YGHLKEAEKIITTM 635 (667)
Q Consensus 622 --~g~~~~A~~~~~~m 635 (667)
..+.++|.++|++.
T Consensus 229 g~~~n~~~A~~~~~kA 244 (265)
T d1ouva_ 229 GVTRNEKQAIENFKKG 244 (265)
T ss_dssp SSSCCSTTHHHHHHHH
T ss_pred CCccCHHHHHHHHHHH
Confidence 33788888888765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.40 E-value=0.00099 Score=54.27 Aligned_cols=120 Identities=12% Similarity=0.085 Sum_probs=80.5
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHH
Q 005969 479 SACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRAL 558 (667)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 558 (667)
......|+++.|.+.+........-++-... ..+.+ +...-..+.......+..+...+...|++++|+
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w--~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQF--VEPFATALVEDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 4566778888888888887765211100000 00000 000011111123356777889999999999999
Q ss_pred HHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHH----hhCCCCCcch
Q 005969 559 EKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNR----SYGVEPEMDH 611 (667)
Q Consensus 559 ~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~ 611 (667)
..++++.+. .| +...|..++.+|...|++.+|++.|+++.+ ..|+.|+..+
T Consensus 88 ~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 88 AELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999985 55 677899999999999999999999998733 4699998765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.00061 Score=55.25 Aligned_cols=80 Identities=11% Similarity=-0.098 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHH
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVV 616 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~ 616 (667)
.+|+.+..+|.+.|++++|+..+++.++. .| +..+|..+..+|...|++++|...|++..+- .| +..+...+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---~P~n~~~~~~l~ 137 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLA 137 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 35667788888899999999999888885 55 5668888888889999999999999988443 34 444444444
Q ss_pred HHHhhcC
Q 005969 617 DLLVRYG 623 (667)
Q Consensus 617 ~~~~~~g 623 (667)
.+..+.+
T Consensus 138 ~~~~~~~ 144 (170)
T d1p5qa1 138 VCQQRIR 144 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00076 Score=54.67 Aligned_cols=75 Identities=5% Similarity=-0.067 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005969 574 VALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPP-NALIWRTFLEG 650 (667)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~ 650 (667)
.+|+.+..+|.+.|++++|+..+++..+. -|.++..+..++.++...|++++|...|++. .+.| +..+...+-..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35777888999999999999999999655 3446788999999999999999999999998 3555 44444444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.34 E-value=0.0013 Score=52.04 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=30.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 575 ALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+|..+..+|.+.|++++|++.+++.... -+.+...|..++.++...|++++|...|++.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a 127 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKA 127 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555555333 2333445555555555555555555555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.33 E-value=0.00086 Score=54.35 Aligned_cols=61 Identities=10% Similarity=-0.068 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
..|..+..++.+.|++++|+..+++.++. .| +...|..+..++...|++++|+..|++..+
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555666666667777777777776663 34 345666666667777777777777766643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.30 E-value=0.0032 Score=51.07 Aligned_cols=119 Identities=15% Similarity=0.228 Sum_probs=85.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS 522 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 522 (667)
.......|++++|.+.|.+.... .+... +......+.+...-..+... ....+..+...+...|+
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATALVED-----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCC
Confidence 35667889999999999998763 12111 01111112222222222222 45677888999999999
Q ss_pred hHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHhHH
Q 005969 523 IGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEF-----LGFKPDRVAL 576 (667)
Q Consensus 523 ~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~g~~p~~~~~ 576 (667)
+++|...++.+. +| +...|..++.+|...|+.++|++.|+++.+ .|+.|...+-
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 999999999887 44 778999999999999999999999999744 6999987653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.002 Score=49.09 Aligned_cols=59 Identities=5% Similarity=-0.035 Sum_probs=34.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 441 IVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 441 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
.+...+.+.|++++|+..|.+..+.+ +.+...+..+..+|.+.|+++.|.+.++.+.+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 67 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence 34455566666666666666666542 234555555666666666666666666665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00011 Score=71.95 Aligned_cols=106 Identities=9% Similarity=-0.106 Sum_probs=40.5
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHH
Q 005969 473 TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALG 549 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~ 549 (667)
.+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...|+... .| +...|+.|...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI----CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 33444444444555555554444433321 12344445555555555555555555544 23 2345555555555
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005969 550 LNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583 (667)
Q Consensus 550 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 583 (667)
..|+..+|+..|.+..... +|-+.++..|...+
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 5555555555555555432 33344444444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.08 E-value=0.0023 Score=50.56 Aligned_cols=62 Identities=15% Similarity=0.031 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
.+|..+..+|.+.|++++|++.+++..+. .| +..+|..+..++...|++++|...|++..+-
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777888999999999999999999885 45 5679999999999999999999999988543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.02 E-value=0.0027 Score=51.14 Aligned_cols=80 Identities=13% Similarity=-0.054 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-cchhHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-MDHYHCVVDL 618 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 618 (667)
.|..+..+|.+.|++++|+..+++..+.. +.+..+|..+..++...|++++|...|+++. . +.|+ ..+...+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al-~--l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL-E--VNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--SCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHH
Confidence 45556777788888888888888887742 3346677778888888888888888888774 3 2333 3444444444
Q ss_pred HhhcC
Q 005969 619 LVRYG 623 (667)
Q Consensus 619 ~~~~g 623 (667)
..+.+
T Consensus 142 ~~~~~ 146 (168)
T d1kt1a1 142 QKKAK 146 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.88 E-value=0.0032 Score=50.84 Aligned_cols=75 Identities=7% Similarity=-0.061 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
.|..+..++.+.|++++|+..+++..+.. +.+...|..+..++...|+++.|.+.|+.+.+.. |.+......+..
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~ 153 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 34445555666666666666666665532 2234455556666666666666666666666553 324444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.83 E-value=0.02 Score=45.76 Aligned_cols=94 Identities=14% Similarity=0.048 Sum_probs=66.3
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTA 582 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~ 582 (667)
..+|..+..+|.+.|++++|...++... . .+..+|..+..++...|++++|.+.|++..+. .|+ ......+-..
T Consensus 64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3456667788889999999999998876 3 46678888899999999999999999999884 565 4444444444
Q ss_pred HhccCCH-HHHHHHHHHhHHh
Q 005969 583 CRHGGLV-REGMELFERMNRS 602 (667)
Q Consensus 583 ~~~~g~~-~~A~~~~~~~~~~ 602 (667)
....+.. +...+.+..|.+.
T Consensus 142 ~~~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhh
Confidence 3343333 3345555555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.82 E-value=0.0024 Score=50.78 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=66.1
Q ss_pred hHHHH--HHHHHhCCChHHHHHHHHHHHHcCC-CCC----------HhHHHHHHHHHhccCCHHHHHHHHHHhHHhh---
Q 005969 540 TWTAL--ISALGLNGFAQRALEKFREMEFLGF-KPD----------RVALIAVLTACRHGGLVREGMELFERMNRSY--- 603 (667)
Q Consensus 540 ~~~~l--i~~~~~~~~~~~A~~~~~~~~~~g~-~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--- 603 (667)
+|..+ ...+...|++++|++.|++.++..- .|+ ..+|+.+..+|...|++++|.+.+++..+-.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 4445567888888888888775210 111 3578888888999999999998888875321
Q ss_pred -CCCCC-----cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 604 -GVEPE-----MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 604 -~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
...++ ...+..+..+|...|++++|.+.|++.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11121 124677889999999999999988875
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.00067 Score=66.28 Aligned_cols=222 Identities=9% Similarity=-0.055 Sum_probs=113.2
Q ss_pred HHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcch---HHHHHHHHHHcCChhHHHHHHHHHHHc
Q 005969 391 DALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVS---WNIVIAACAHNGDYKEVLELFKYMRAA 465 (667)
Q Consensus 391 ~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 465 (667)
+|.+.|++. -.|.....+..+..++...+++++| ++++...|+.. ++..- .+. ...+..+.+.++...+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~-~Lw-~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQ-DLW-NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHH-HHH-HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHH-HHH-HHHHHHHHHHHHHhccc
Confidence 566666665 2333345555666677777777765 33332222211 11100 001 11244566666666654
Q ss_pred CCCCCHHHHHHHHHHH--hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCCh-hhHH
Q 005969 466 RIYPDNYTFVSLLSAC--SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNV-ITWT 542 (667)
Q Consensus 466 g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 542 (667)
...++..-....+..+ ...+.++.+...+....+ ..|++...+..+...+.+.|+.++|...++...+++. .++.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 156 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLV 156 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHH
Confidence 4344433222222222 122334444443333332 2355667777888888888888888887776654433 4677
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhh
Q 005969 543 ALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVR 621 (667)
Q Consensus 543 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (667)
.+...+...|++++|+..|++..+. .|+ ..+|+.|...+...|+..+|...|.+.... -+|-+..+..|...+.+
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHH
Confidence 7888888999999999999999884 665 568999999999999999999999887433 35566777888887765
Q ss_pred cC
Q 005969 622 YG 623 (667)
Q Consensus 622 ~g 623 (667)
..
T Consensus 233 ~~ 234 (497)
T d1ya0a1 233 AL 234 (497)
T ss_dssp HT
T ss_pred hh
Confidence 54
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.55 E-value=0.0035 Score=54.54 Aligned_cols=53 Identities=15% Similarity=-0.013 Sum_probs=31.8
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTE 501 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 501 (667)
+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+..
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~ 60 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4566666666666666542 3344566666666666666666666666666553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.54 E-value=0.0014 Score=57.15 Aligned_cols=119 Identities=9% Similarity=-0.033 Sum_probs=79.2
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCCh-hhHHHHHHHHHhCCChHHH
Q 005969 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNV-ITWTALISALGLNGFAQRA 557 (667)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~A 557 (667)
..+.|+++.|...++...+.. |.+...+..+...|+..|++++|.+.++... .|+. ..+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 456799999999999999886 6689999999999999999999999999887 3433 3444444443332222222
Q ss_pred HHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 558 LEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 558 ~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
..-.......+ .|+ ...+......+...|+.++|.+.++++...
T Consensus 84 ~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11111100111 222 234444566678889999999999988555
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.47 E-value=0.0079 Score=46.74 Aligned_cols=122 Identities=7% Similarity=-0.046 Sum_probs=68.7
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------CChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKL----------CNLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
-+.+.+++|...|+...+.. +-+...+..+..++... +.+++|...++++.+.+ |.+..+|..+..+
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHH
Confidence 34455777777777777643 33445555555555432 33456666777666654 4466666666666
Q ss_pred HHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELF 596 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 596 (667)
|...|+.. ++... ..+.+++|.+.|++..+ +.|+...|..-+..+. .|.+++
T Consensus 85 y~~~g~~~-----------~~~~~---------~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~~------ka~~~~ 136 (145)
T d1zu2a1 85 YTSFAFLT-----------PDETE---------AKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA------KAPQLH 136 (145)
T ss_dssp HHHHHHHC-----------CCHHH---------HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH------THHHHH
T ss_pred HHHcccch-----------hhHHH---------HHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHHH------HHHHHH
Confidence 65544221 00000 01235677788888777 4777666666555553 345555
Q ss_pred HHh
Q 005969 597 ERM 599 (667)
Q Consensus 597 ~~~ 599 (667)
.+.
T Consensus 137 ~e~ 139 (145)
T d1zu2a1 137 AEA 139 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.45 E-value=0.0058 Score=47.57 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=71.3
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFR 562 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 562 (667)
+.+.+++|...++...+.. |.++..+..+..++...+++..+.+ ..+.+++|+..|+
T Consensus 9 r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e---------------------~~~~~~~Ai~~~~ 65 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISD---------------------AKQMIQEAITKFE 65 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHH---------------------HHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhH---------------------HHHHHHHHHHHHH
Confidence 3455667777777776664 4466666666666655444433322 1234578888888
Q ss_pred HHHHcCCCCC-HhHHHHHHHHHhccCC-----------HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHh
Q 005969 563 EMEFLGFKPD-RVALIAVLTACRHGGL-----------VREGMELFERMNRSYGVEPEMDHYHCVVDLLV 620 (667)
Q Consensus 563 ~~~~~g~~p~-~~~~~~li~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 620 (667)
+.++. .|+ ..+|..+..+|...|+ +++|.+.|++... +.|+...|..-+..+.
T Consensus 66 kAl~l--~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~---l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 66 EALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHh--cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc---cCCCHHHHHHHHHHHH
Confidence 88874 564 5688888888866543 5778888887743 4788877776665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.27 E-value=0.11 Score=37.30 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
..++..+..+..+|+-+.-.++++.+.+.+ +|++...-.+..+|.+.|...++.+++.+..+. |.
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 345556677778888888888888866643 777777788888888888888888888877444 54
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.13 E-value=0.015 Score=45.84 Aligned_cols=61 Identities=20% Similarity=0.077 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCC-----HhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFL-----GFKPD-----RVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
.|+.+..+|...|++++|++.+++..+. ...++ ...+..+..+|...|++++|...|++..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666655555431 11111 1245556666777777777777766653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.97 Score=42.33 Aligned_cols=416 Identities=8% Similarity=-0.055 Sum_probs=200.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCC-ccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccC
Q 005969 11 SIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDS-LNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHG 89 (667)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 89 (667)
..+....++|+...+..+...+... | -..|...-.+.. .......++..-+.+..+.|........-+..+++.+
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhcc
Confidence 3456677889999888888887543 2 223322222111 1111222333333332212222233344466778889
Q ss_pred ChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHH
Q 005969 90 CLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIK 169 (667)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 169 (667)
+++.....+...+ .+...-.....+....|+.+.|.+.+..+-..|.. .+... ..++..+.+
T Consensus 87 ~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c----------------~~l~~~~~~ 148 (450)
T d1qsaa1 87 DWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNAC----------------DKLFSVWRA 148 (450)
T ss_dssp CHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHH----------------HHHHHHHHH
T ss_pred CHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHH----------------HHHHHHHHh
Confidence 9988887775433 24444556778888999999999988887665522 11222 223444444
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHH
Q 005969 170 NGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVI 249 (667)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 249 (667)
.| .++...+-.-+......|+...|..+...++..........+...-. ...+...... ..++......+.
T Consensus 149 ~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~-----~~~~~~~~~~~~ 219 (450)
T d1qsaa1 149 SG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----TGATDFTRQMAA 219 (450)
T ss_dssp TT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----SCCCHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc-----CCCChhhhHHHH
Confidence 33 23444444455555666777777777777664444444444443322 2222222111 112222222222
Q ss_pred HHhhc--cCChhHHHHHHHHHHHhcCCCCchHH---HHHHHHHHhcCChHHHHHHHhccCC--CCcccHHHHHHHHhcCC
Q 005969 250 NSCAG--LQNSILGKSIHAKVIKNALECDVFVG---SALVDFYAKCDNLEGAHLCFSEISN--KNIVSWNALILGYASKS 322 (667)
Q Consensus 250 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~ 322 (667)
.++.+ ..+.+.+...+..........+.... ..+.......+..+.+...+..... .+.....-.+......+
T Consensus 220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~ 299 (450)
T d1qsaa1 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTG 299 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcC
Confidence 33222 23455555555555443222111110 1111111223334444444333221 11111122222233334
Q ss_pred ChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCC
Q 005969 323 SPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNI 401 (667)
Q Consensus 323 ~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 401 (667)
+.. +...+..|-........-.| =+..++...|+.++|...|.....
T Consensus 300 ~~~~~~~~~~~l~~~~~~~~r~~Y--------------------------------W~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 300 DRRGLNTWLARLPMEAKEKDEWRY--------------------------------WQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHH--------------------------------HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHhcCcccccHHHHHH--------------------------------HHHHHHHHcCChhhHHHHHHHHhc
Confidence 444 44444433111000011111 345667777888888888877743
Q ss_pred CCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcch-----HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 005969 402 PRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVS-----WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVS 476 (667)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 476 (667)
.++ .|..+...-... .+.-. ......+.... -..-+..+...|+...|...+..+... .+......
T Consensus 348 ~~~--fYG~LAa~~Lg~-~~~~~---~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~ 418 (450)
T d1qsaa1 348 QRG--FYPMVAAQRIGE-EYELK---IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQ 418 (450)
T ss_dssp SCS--HHHHHHHHHTTC-CCCCC---CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHH
T ss_pred CCC--hHHHHHHHHcCC-CCCCC---cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHH
Confidence 332 333332221110 00000 00000111111 112355667889999999999888753 35556667
Q ss_pred HHHHHhccCChhhHHHHHHHHH
Q 005969 477 LLSACSKLCNLALGSSLHGLIK 498 (667)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~ 498 (667)
+.....+.|..+.|+.......
T Consensus 419 la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 419 LARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCCChhHHHHHHHHHH
Confidence 7788889999999987766553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.028 Score=39.59 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
+++.+..++.+.|++++|++.++++.+
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344455555555555555555555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.21 E-value=0.21 Score=37.56 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=30.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 451 DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
|+++|..+|++..+.|.. . ....|. .....+.++|...+++..+.| ++.....|...|.
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~ 66 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYE 66 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhccc----chhhhhhHHHhhh
Confidence 566777777777666522 1 122221 223445666666666666655 3444444444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.12 Score=36.03 Aligned_cols=61 Identities=10% Similarity=-0.162 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC-----CCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 542 TALISALGLNGFAQRALEKFREMEFLG-----FKPD-RVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~~g-----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
-.+...+.+.|++++|+..|++..+.. ..++ ..++..|..++.+.|++++|...++++.+-
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 356667777788888888777765421 1122 346777888888888888888888877543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.24 E-value=0.35 Score=34.69 Aligned_cols=66 Identities=11% Similarity=-0.023 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEI 502 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 502 (667)
...++..++.....|+-++-.++++++.+.+ +|++...-.+..+|.+.|+..++.+++.++-+.|.
T Consensus 86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 86 NEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3445556677777787777777877766543 67777777778888888888888888887777764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.72 E-value=0.73 Score=34.28 Aligned_cols=106 Identities=9% Similarity=-0.021 Sum_probs=61.4
Q ss_pred CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-CChhhHHHHHHHHHh----CCChHHHHH
Q 005969 485 CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-RNVITWTALISALGL----NGFAQRALE 559 (667)
Q Consensus 485 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~ 559 (667)
.|.++|.++|++..+.| ++.....|. .....+.++|.+.++...+ -++.....|...|.. ..+.++|.+
T Consensus 7 kd~~~A~~~~~kaa~~g----~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN----EMFGCLSLV--SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT----CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC----Chhhhhhhc--cccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHH
Confidence 36778888888888776 333333333 2334566777777776553 344455555555543 345677777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHh
Q 005969 560 KFREMEFLGFKPDRVALIAVLTACRH----GGLVREGMELFERM 599 (667)
Q Consensus 560 ~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 599 (667)
+|++..+.| ++.....|...|.. ..+.++|.++|+..
T Consensus 81 ~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A 121 (133)
T d1klxa_ 81 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 121 (133)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence 777777755 23333344444433 34666777777666
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.38 E-value=3 Score=28.20 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 005969 554 AQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
.-++.+-++.+....+.|++....+.+++|.+..|+..|..+++.+..+ ..++...|..++.-
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilqe 84 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 84 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHHH
Confidence 3345555566666667888888888888888888888888888877444 33445566665543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.16 E-value=3 Score=29.99 Aligned_cols=60 Identities=8% Similarity=0.004 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 540 TWTALISALGLNG---FAQRALEKFREMEFLGFKPDR-VALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 540 ~~~~li~~~~~~~---~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
+--....++++.. +.++++.++++..+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+.
T Consensus 37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334444444443 2456666666666532 1222 344555556666666666666666664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.25 E-value=2.3 Score=30.60 Aligned_cols=90 Identities=9% Similarity=0.001 Sum_probs=60.6
Q ss_pred HHHHHHHHcC-CCCCHhHHHHHHHHHhcc---CCHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHhhcCChHHHHHHHH
Q 005969 559 EKFREMEFLG-FKPDRVALIAVLTACRHG---GLVREGMELFERMNRSYGVEPEM-DHYHCVVDLLVRYGHLKEAEKIIT 633 (667)
Q Consensus 559 ~~~~~~~~~g-~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 633 (667)
.+-++..+.+ -.|...|-....++++++ .+.++++.+++++.+. .+.+. ..+-.|.-+|.+.|++++|.+.++
T Consensus 20 ~~~~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~ 97 (124)
T d2pqrb1 20 ILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVD 97 (124)
T ss_dssp HHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334444442 234555666777787765 4567899999998654 22232 566788889999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHH
Q 005969 634 TM-PFPPNALIWRTFLEG 650 (667)
Q Consensus 634 ~m-~~~p~~~~~~~l~~~ 650 (667)
++ .+.|+..-...+...
T Consensus 98 ~~L~ieP~n~qA~~L~~~ 115 (124)
T d2pqrb1 98 TLFEHERNNKQVGALKSM 115 (124)
T ss_dssp HHHHHCTTCHHHHHHHHH
T ss_pred HHHccCCCcHHHHHHHHH
Confidence 98 466765554444433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.61 E-value=5.4 Score=26.92 Aligned_cols=62 Identities=8% Similarity=-0.068 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHH
Q 005969 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLV 183 (667)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 183 (667)
+.-++.+-++.+......|++....+.+++|.+.+|+..|..+++-++...- ++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~-~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence 4445666677777778888888888888888888888888888888776532 2344555444
|