Citrus Sinensis ID: 006010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660----
Protein Sequence
MRKWSLPHTKILLTITNSAMKMKTLSLTTIPSERSHRFFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNLYG
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccHHHHHccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrkwslphtkILLTITNSAMKMKTLSlttipsershrffsvrsavssnkqmetepqgnakseqpfsdeifnstpklgsyqlgdsTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVnakhmnilpntltFNLVIKTVCRLGLVDNAIQLFrempvrncepdiyTYCTLMDGLCKENRLDEAVLLLDemqvdgcfptpvTFNVLINGlckngelgraAKLVDnmflkgclpnevtyNTLIHGLCLKGNLDKAVSLLDRMVaskcmpnevtyGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMekgckpntVVYSALIDGlcrvgkpdeAEEILFEMINngcaanafTYSSLMKGffesgkghkAVEIWKDMAknncvyneVCYSVLIHGLCEDGKLREARMVWTQMlsrgckpdvVAYSSMIHGLCNAGSVEEALKLFNEMlclepksqpdvfTYNILLNALCKQSNISHSIDLLNsmmdrgcdpdlVTCNIFLTALKekleapqdgTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNLYG
Flexible Loop (DISEMBL)
mrkwslphtkILLTITNSAMKMKTLSLttipsershrfFSVRSAVSSNKQMETepqgnakseqpfSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQlfrempvrncEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQkflspqtstWERVVQELCRPKRIQAAINKCWSNLYG
Low Complexity Region (SEG)
MRKWSLPHTKILLTITNSAMKMKTLSLTTIPSERSHRFFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNLYG
Disordered region (IsUnstruct)
*******HTKILLTITNSAMKM*****************************************************LGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL**
Disordered Region (DISOPRED)
******PHTKILLTITNSAMKMKTLSLTTIP********SVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNLYG
Disordered Region (DISEMBL)
MRKWSLPHTKILLTITNSAMKMKTLSLTTIPSERSHRFFSVR*********************PFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNLYG
Disordered Region (DISPRO)
***WSLPHTKILLTITNSAMKMKTLSLTTIPSERSHRFFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNLY*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKWSLPHTKILLTITNSAMKMKTLSLTTIPSERSHRFFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNLYG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	664	2.2.26 [Sep-21-2011]
O49436	660	Pentatricopeptide repeat-	yes	no	0.905	0.910	0.668	0.0
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.861	0.783	0.314	9e-81
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.924	0.814	0.282	3e-77
Q9CA58	763	Putative pentatricopeptid	no	no	0.843	0.733	0.290	3e-74
Q9CAN0	630	Pentatricopeptide repeat-	no	no	0.608	0.641	0.357	9e-73
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.620	0.688	0.327	5e-71
Q9LQ14	629	Pentatricopeptide repeat-	no	no	0.694	0.732	0.312	6e-70
Q9SXD1	630	Pentatricopeptide repeat-	no	no	0.694	0.731	0.302	3e-69
Q9SH26	577	Pentatricopeptide repeat-	no	no	0.707	0.814	0.303	5e-69
Q9CAN5	614	Pentatricopeptide repeat-	no	no	0.629	0.680	0.331	3e-68

>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1

 Score =  863 bits (2231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/603 (66%), Positives = 494/603 (81%), Gaps = 2/603 (0%)

Query: 62  EQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSF 121
           E P S+++F S PK+GS++LGDST  S+I+ YANSGDF S+E +L R+R E RV++E+SF
Sbjct: 56  EAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSF 115

Query: 122 IFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIV 181
           I +F+AYGKAHL ++A+ LFH MVDEF CKR+VKSFNSVLNVII EGLYHR LEFY+++V
Sbjct: 116 IVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVV 175

Query: 182 NAK-HMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE 240
           N+  +MNI PN L+FNLVIK +C+L  VD AI++FR MP R C PD YTYCTLMDGLCKE
Sbjct: 176 NSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKE 235

Query: 241 NRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTY 300
            R+DEAVLLLDEMQ +GC P+PV +NVLI+GLCK G+L R  KLVDNMFLKGC+PNEVTY
Sbjct: 236 ERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTY 295

Query: 301 NTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEE 360
           NTLIHGLCLKG LDKAVSLL+RMV+SKC+PN+VTYGT+INGLVK  RA D  R+L SMEE
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEE 355

Query: 361 RKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDE 420
           R +H+N++IYS LISGLFKEGKAE+AM LW++M EKGCKPN VVYS L+DGLCR GKP+E
Sbjct: 356 RGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNE 415

Query: 421 AEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIH 480
           A+EIL  MI +GC  NA+TYSSLMKGFF++G   +AV++WK+M K  C  N+ CYSVLI 
Sbjct: 416 AKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLID 475

Query: 481 GLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCL-EPK 539
           GLC  G+++EA MVW++ML+ G KPD VAYSS+I GLC  GS++ ALKL++EMLC  EPK
Sbjct: 476 GLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPK 535

Query: 540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDG 599
           SQPDV TYNILL+ LC Q +IS ++DLLNSM+DRGCDPD++TCN FL  L EK  +   G
Sbjct: 536 SQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKG 595

Query: 600 TDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCW 659
             FL EL +RL KRQR SG   IVEVML K+L+P+TSTW  +V+E+C+PK+I AAI+KCW
Sbjct: 596 RSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREICKPKKINAAIDKCW 655

Query: 660 SNL 662
            NL
Sbjct: 656 RNL 658

May play a role in embryogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  301 bits (772), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 188/598 (31%), Positives = 305/598 (51%), Gaps = 26/598 (4%)

Query: 66  SDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIF 125
           S E+F+ T     Y+     +  LI     +G+FK+++ +L +M+ E  V  E  FI I 
Sbjct: 94  SMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIM 153

Query: 126 KAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKH 185
           + Y KA    +  RL   M + + C+ T KS+N VL +++    +  A   +  +++ K 
Sbjct: 154 RDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRK- 212

Query: 186 MNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDE 245
             I P   TF +V+K  C +  +D+A+ L R+M    C P+   Y TL+  L K NR++E
Sbjct: 213 --IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNE 270

Query: 246 AVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIH 305
           A+ LL+EM + GC P   TFN +I GLCK   +  AAK+V+ M ++G  P+++TY  L++
Sbjct: 271 ALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMN 330

Query: 306 GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV 365
           GLC  G +D A  L  R+      P  V + T+I+G V  GR  D   VL  M      V
Sbjct: 331 GLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV 386

Query: 366 NEY-IYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEI 424
            +   Y++LI G +KEG    A+++   M  KGCKPN   Y+ L+DG C++GK DEA  +
Sbjct: 387 PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNV 446

Query: 425 LFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE 484
           L EM  +G   N   ++ L+  F +  +  +AVEI+++M +  C  +   ++ LI GLCE
Sbjct: 447 LNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 506

Query: 485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV 544
             +++ A  +   M+S G   + V Y+++I+     G ++EA KL NEM+     S  D 
Sbjct: 507 VDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF--QGSPLDE 564

Query: 545 FTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLN 604
            TYN L+  LC+   +  +  L   M+  G  P  ++CNI +  L       ++  +F  
Sbjct: 565 ITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRS-GMVEEAVEFQK 623

Query: 605 ELAIR---------------LFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCR 647
           E+ +R               L +  R   G  +   +  + + P T T+  ++  LC+
Sbjct: 624 EMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCK 681

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  290 bits (741), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 179/634 (28%), Positives = 323/634 (50%), Gaps = 20/634 (3%)

Query: 24  TLSLTTIPSERSHRFFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGD 83
           + SL   P   +  F S  SA  S+  ++      ++ +   +  +FN   K  ++    
Sbjct: 24  SFSLNLTPPSSTISFASPHSAALSSTDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEP 83

Query: 84  STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHT 143
           + +  ++     SG F  ++ +L  M+  +  +   +F+ + ++Y +  L +E + +   
Sbjct: 84  ALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDW 143

Query: 144 MVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVC 203
           M+DEF  K     +N +LN+++ +G   + +E  +  ++     I P+  TFN++IK +C
Sbjct: 144 MIDEFGLKPDTHFYNRMLNLLV-DGNSLKLVEISHAKMSV--WGIKPDVSTFNVLIKALC 200

Query: 204 RLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPV 263
           R   +  AI +  +MP     PD  T+ T+M G  +E  LD A+ + ++M   GC  + V
Sbjct: 201 RAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNV 260

Query: 264 TFNVLINGLCKNGELGRAAKLVDNMFLK-GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDR 322
           + NV+++G CK G +  A   +  M  + G  P++ T+NTL++GLC  G++  A+ ++D 
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320

Query: 323 MVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGK 382
           M+     P+  TY ++I+GL KLG   +   VL  M  R    N   Y+TLIS L KE +
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380

Query: 383 AEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSS 442
            E+A +L + +  KG  P+   +++LI GLC       A E+  EM + GC  + FTY+ 
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440

Query: 443 LMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG 502
           L+      GK  +A+ + K M  + C  + + Y+ LI G C+  K REA  ++ +M   G
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG 500

Query: 503 CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH 562
              + V Y+++I GLC +  VE+A +L ++M+      +PD +TYN LL   C+  +I  
Sbjct: 501 VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM--EGQKPDKYTYNSLLTHFCRGGDIKK 558

Query: 563 SIDLLNSMMDRGCDPDLVTCNIFLTAL---------KEKLEAPQ-DGTDF----LNELAI 608
           + D++ +M   GC+PD+VT    ++ L          + L + Q  G +      N +  
Sbjct: 559 AADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQ 618

Query: 609 RLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVV 642
            LF++++T+    +   ML++  +P  +   R+V
Sbjct: 619 GLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIV 652

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1

 Score =  280 bits (715), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 171/588 (29%), Positives = 296/588 (50%), Gaps = 28/588 (4%)

Query: 68  EIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRRE-KRVVLEKSFIFIFK 126
           E+FNS  K   ++   ST+ S+I+     G F+++E VL  MR      +LE  ++   K
Sbjct: 25  EMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMK 84

Query: 127 AYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHM 186
            YG+   V+EA+ +F  M D + C+ TV S+N++++V++  G + +A + Y   +  +  
Sbjct: 85  NYGRKGKVQEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVY---MRMRDR 140

Query: 187 NILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEA 246
            I P+  +F + +K+ C+      A++L   M  + CE ++  YCT++ G  +EN   E 
Sbjct: 141 GITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEG 200

Query: 247 VLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHG 306
             L  +M   G      TFN L+  LCK G++    KL+D +  +G LPN  TYN  I G
Sbjct: 201 YELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQG 260

Query: 307 LCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVN 366
           LC +G LD AV ++  ++     P+ +TY  +I GL K  +  +    L  M       +
Sbjct: 261 LCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPD 320

Query: 367 EYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILF 426
            Y Y+TLI+G  K G  + A ++    +  G  P+   Y +LIDGLC  G+ + A  +  
Sbjct: 321 SYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFN 380

Query: 427 EMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG 486
           E +  G   N   Y++L+KG    G   +A ++  +M++   +     +++L++GLC+ G
Sbjct: 381 EALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMG 440

Query: 487 KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFT 546
            + +A  +   M+S+G  PD+  ++ +IHG      +E AL++ + M  L+    PDV+T
Sbjct: 441 CVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM--LDNGVDPDVYT 498

Query: 547 YNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNEL 606
           YN LLN LCK S     ++   +M+++GC P+L T NI L +                  
Sbjct: 499 YNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLES------------------ 540

Query: 607 AIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAA 654
              L + ++      ++E M  K ++P   T+  ++   C+   +  A
Sbjct: 541 ---LCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGA 585

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1

 Score =  275 bits (703), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 234/411 (56%), Gaps = 7/411 (1%)

Query: 190 PNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLL 249
           P+ +T N ++   C    + +A+ L  +M     +PD +T+ TL+ GL + NR  EAV L
Sbjct: 149 PDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVAL 208

Query: 250 LDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL 309
           +D M V GC P  VT+ +++NGLCK G++  A  L+  M      P  V YNT+I  LC 
Sbjct: 209 VDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCN 268

Query: 310 KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYI 369
             N++ A++L   M      PN VTY ++I  L   GR  D +R+L  M ERK + N   
Sbjct: 269 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 328

Query: 370 YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMI 429
           +S LI    KEGK  +A KL+ +M+++   P+   YS+LI+G C   + DEA+ +   MI
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 388

Query: 430 NNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR 489
           +  C  N  TY++L+KGF ++ +  + +E++++M++   V N V Y+ LIHG  +  +  
Sbjct: 389 SKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECD 448

Query: 490 EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI 549
            A++V+ QM+S G  PD++ YS ++ GLCN G VE AL +F  +     K +PD++TYNI
Sbjct: 449 NAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYL--QRSKMEPDIYTYNI 506

Query: 550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLT-----ALKEKLEA 595
           ++  +CK   +    DL  S+  +G  P++VT    ++      LKE+ +A
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 557

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  269 bits (688), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 137/418 (32%), Positives = 239/418 (57%), Gaps = 6/418 (1%)

Query: 189 LPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVL 248
           +P+ +T+N++I   C+ G ++NA+ +   M V    PD+ TY T++  LC   +L +A+ 
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMSV---SPDVVTYNTILRSLCDSGKLKQAME 225

Query: 249 LLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLC 308
           +LD M    C+P  +T+ +LI   C++  +G A KL+D M  +GC P+ VTYN L++G+C
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 309 LKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEY 368
            +G LD+A+  L+ M +S C PN +T+  I+  +   GR +D  ++L  M  + F  +  
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEM 428
            ++ LI+ L ++G    A+ + ++M + GC+PN++ Y+ L+ G C+  K D A E L  M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 429 INNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKL 488
           ++ GC  +  TY++++    + GK   AVEI   ++   C    + Y+ +I GL + GK 
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYN 548
            +A  +  +M ++  KPD + YSS++ GL   G V+EA+K F+E   +  +  P+  T+N
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIR--PNAVTFN 523

Query: 549 ILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNEL 606
            ++  LCK      +ID L  M++RGC P+  +  I +  L  +  A ++  + LNEL
Sbjct: 524 SIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMA-KEALELLNEL 580

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2

 Score =  265 bits (678), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 160/512 (31%), Positives = 267/512 (52%), Gaps = 51/512 (9%)

Query: 134 VEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTL 193
           +++A+ LF  MV        V+ FN +L+ I +   +   +     + N   + I  +  
Sbjct: 61  LDDAVDLFGEMVQSRPLPSIVE-FNKLLSAIAKMNKFDLVISLGERMQN---LRISYDLY 116

Query: 194 TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEM 253
           ++N++I   CR   +  A+ +  +M     EPDI T  +L++G C   R+ EAV L+D+M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176

Query: 254 QVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNL 313
            V    P  VTFN LI+GL  + +   A  L+D M  +GC P+  TY T+++GLC +G++
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236

Query: 314 DKAVSLLDRMVASKC-----------------------------------MPNEVTYGTI 338
           D A+SLL +M   K                                     PN VTY ++
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296

Query: 339 INGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGC 398
           I  L   GR  D +R+L  M ERK + N   +S LI    KEGK  +A KL+ +M+++  
Sbjct: 297 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356

Query: 399 KPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVE 458
            P+   YS+LI+G C   + DEA+ +   MI+  C  N  TY++L+KGF ++ +  + +E
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 416

Query: 459 IWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLC 518
           ++++M++   V N V Y+ LI GL + G    A+ ++ +M+S G  PD++ YS ++ GLC
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476

Query: 519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD 578
             G +E+AL +F  +   + K +PD++TYNI++  +CK   +    DL  S+  +G  P+
Sbjct: 477 KYGKLEKALVVFEYLQ--KSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 534

Query: 579 LVTCNIFLT-----ALKEKLEA-----PQDGT 600
           ++     ++      LKE+ +A      +DGT
Sbjct: 535 VIIYTTMISGFCRKGLKEEADALFREMKEDGT 566

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2

 Score =  263 bits (672), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 155/512 (30%), Positives = 270/512 (52%), Gaps = 51/512 (9%)

Query: 134 VEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTL 193
           +++A+ LF  MV        ++ F+ +L+ I +   +   +     + N   + I  N  
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIE-FSKLLSAIAKMNKFDVVISLGEQMQN---LGIPHNHY 117

Query: 194 TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEM 253
           T++++I   CR   +  A+ +  +M     EP+I T  +L++G C   R+ EAV L+D+M
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 254 QVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNL 313
            V G  P  VTFN LI+GL  + +   A  L+D M  KGC P+ VTY  +++GLC +G+ 
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 314 DKAVSLLDRMVASKCMPNEVTYGTIINGLVKL---------------------------- 345
           D A +LL++M   K  P  + Y TII+GL K                             
Sbjct: 238 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 297

Query: 346 -------GRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGC 398
                  GR  D +R+L  M ERK + + + +S LI    KEGK  +A KL+ +M+++  
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357

Query: 399 KPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVE 458
            P+ V YS+LI+G C   + DEA+++   M++  C  +  TY++L+KGF +  +  + +E
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417

Query: 459 IWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLC 518
           ++++M++   V N V Y++LI GL + G    A+ ++ +M+S G  P+++ Y++++ GLC
Sbjct: 418 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 477

Query: 519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD 578
             G +E+A+ +F  +     K +P ++TYNI++  +CK   +    DL  ++  +G  PD
Sbjct: 478 KNGKLEKAMVVFEYLQ--RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 535

Query: 579 LVTCNIFLTAL-----KEKLEA-----PQDGT 600
           +V  N  ++       KE+ +A      +DGT
Sbjct: 536 VVAYNTMISGFCRKGSKEEADALFKEMKEDGT 567

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1

 Score =  262 bits (670), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 266/520 (51%), Gaps = 50/520 (9%)

Query: 134 VEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTL 193
           +++AI LF  MV       ++  FN +L+ I +   +   +     +   + + I  N  
Sbjct: 66  LDDAIGLFGGMVKSRPLP-SIFEFNKLLSAIAKMKKFDLVISLGEKM---QRLGISHNLY 121

Query: 194 TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEM 253
           T+N++I   CR   +  A+ L  +M     EP I T  +L++G C   R+ +AV L+D+M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 254 QVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNL 313
              G  P  +TF  LI+GL  + +   A  LVD M  +GC PN VTY  +++GLC +G++
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 241

Query: 314 DKAVSLLDRMVASK-----------------------------------CMPNEVTYGTI 338
           D A +LL++M A+K                                     PN +TY ++
Sbjct: 242 DLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSL 301

Query: 339 INGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGC 398
           I+ L    R  D +R+L  M ERK + N   ++ LI    KEGK  +A KL+ +M+++  
Sbjct: 302 ISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSI 361

Query: 399 KPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVE 458
            P+   YS+LI+G C   + DEA+ +   MI+  C  N  TY++L+ GF ++ +  + VE
Sbjct: 362 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVE 421

Query: 459 IWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLC 518
           ++++M++   V N V Y+ LIHG  +      A+MV+ QM+S G  P+++ Y++++ GLC
Sbjct: 422 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 481

Query: 519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD 578
             G +E+A+ +F  +     K +P ++TYNI++  +CK   +    DL  S+  +G  PD
Sbjct: 482 KNGKLEKAMVVFEYLQ--RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPD 539

Query: 579 LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSG 618
           ++  N  ++    K          L E A  LF++ R  G
Sbjct: 540 VIIYNTMISGFCRK---------GLKEEADALFRKMREDG 570

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1

 Score =  260 bits (664), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 236/429 (55%), Gaps = 11/429 (2%)

Query: 190 PNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLL 249
           P+ +T N ++   C    +  A+ L  +M     +PD  T+ TL+ GL + N+  EAV L
Sbjct: 133 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 192

Query: 250 LDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL 309
           ++ M V GC P  VT+  +INGLCK GE   A  L++ M       + V Y+T+I  LC 
Sbjct: 193 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCK 252

Query: 310 KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYI 369
             ++D A++L   M      P+  TY ++I+ L   GR  D +R+L  M ERK + N   
Sbjct: 253 YRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT 312

Query: 370 YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMI 429
           +++LI    KEGK  +A KL+ +M+++   PN V Y++LI+G C   + DEA++I   M+
Sbjct: 313 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMV 372

Query: 430 NNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR 489
           +  C  +  TY++L+ GF ++ K    +E+++DM++   V N V Y+ LIHG  +     
Sbjct: 373 SKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCD 432

Query: 490 EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI 549
            A+MV+ QM+S G  P+++ Y++++ GLC  G +E+A+ +F  +   + K +PD++TYNI
Sbjct: 433 NAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL--QKSKMEPDIYTYNI 490

Query: 550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIR 609
           +   +CK   +    DL  S+  +G  PD++  N  ++   +K          L E A  
Sbjct: 491 MSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKK---------GLKEEAYT 541

Query: 610 LFKRQRTSG 618
           LF + +  G
Sbjct: 542 LFIKMKEDG 550

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	664
224075357	641	predicted protein [Populus trichocarpa]	0.933	0.967	0.724	0.0
255574462	653	pentatricopeptide repeat-containing prot	0.941	0.957	0.726	0.0
224053663	670	predicted protein [Populus trichocarpa]	0.972	0.964	0.692	0.0
225423589	644	PREDICTED: pentatricopeptide repeat-cont	0.927	0.956	0.709	0.0
297738031	660	unnamed protein product [Vitis vinifera]	0.894	0.9	0.732	0.0
297800016	658	EMB1025 [Arabidopsis lyrata subsp. lyrat	0.936	0.945	0.654	0.0
15235288	660	pentatricopeptide repeat-containing prot	0.905	0.910	0.668	0.0
356532610	642	PREDICTED: pentatricopeptide repeat-cont	0.896	0.926	0.673	0.0
449455320	670	PREDICTED: pentatricopeptide repeat-cont	0.945	0.937	0.621	0.0
449502431	646	PREDICTED: pentatricopeptide repeat-cont	0.954	0.981	0.620	0.0

>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa] gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]

 Score =  969 bits (2504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/632 (72%), Positives = 533/632 (84%), Gaps = 12/632 (1%)

Query: 44  AVSSNKQMETEPQGNA------------KSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQ 91
           A+ S K +ETEPQ +             + + P SD+IF S PK+GSY+LGDSTFYSLI 
Sbjct: 9   AIPSTKTIETEPQSHPLHRNASDREHGIEHDPPISDKIFKSGPKMGSYKLGDSTFYSLID 68

Query: 92  HYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCK 151
           +YAN GDFKSLE VL RMR EKRVV+EK F+ IFKAYGKAHL E+A+ LF  M  EF CK
Sbjct: 69  NYANLGDFKSLEKVLDRMRCEKRVVVEKCFVVIFKAYGKAHLPEKAVGLFDRMAYEFECK 128

Query: 152 RTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNA 211
           RTVKSFNSVLNVIIQEGL++RALEFYNH++ AK +NI PN LTFNLVIKT+C++GLVD+A
Sbjct: 129 RTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDA 188

Query: 212 IQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLING 271
           +Q+FR+MPV  C+PD+YTYCTLMDGLCK +R+DEAV LLDEMQ+DGCFP+PVTFNVLING
Sbjct: 189 VQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLING 248

Query: 272 LCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPN 331
           LCK G+L R AKLVDNMFLKGC PNEVTYNTLIHGLCLKG L+KA+SLLDRMV+SKC+PN
Sbjct: 249 LCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPN 308

Query: 332 EVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWK 391
            VTYGTIINGLVK GRA+DGARVL  MEER +HVNEY+YS LISGLFKEGK+++AM+L+K
Sbjct: 309 VVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFK 368

Query: 392 QMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESG 451
           +M  K C+ NT+VYSA+IDGLCR GKPDEA E+L EM NN C  NA+TYSSLMKGFFE+G
Sbjct: 369 EMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAG 428

Query: 452 KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYS 511
            GHKA+E+WKDMAK+N   NEVCYSVLIHGLC+DGK++EA MVW QML +GCKPDVVAY 
Sbjct: 429 NGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYG 488

Query: 512 SMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM 571
           SMI+GL NAG VE+AL+L+NEMLC EP SQPDV TYNILLNALCKQS+IS +IDLLNSM+
Sbjct: 489 SMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSML 548

Query: 572 DRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFL 631
           DRGCDPDLVTC IFL  L+EKL+ PQDG +FL+ L +RL KRQR  G  KIVEVMLQK L
Sbjct: 549 DRGCDPDLVTCIIFLRTLREKLDPPQDGREFLDGLVVRLLKRQRVLGASKIVEVMLQKLL 608

Query: 632 SPQTSTWERVVQELCRPKRIQAAINKCWSNLY 663
            P+ STW RVV++LC PK++QAAI KCWS LY
Sbjct: 609 PPKPSTWTRVVEDLCNPKKVQAAIQKCWSILY 640

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/629 (72%), Positives = 529/629 (84%), Gaps = 4/629 (0%)

Query: 35  SHRFFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYA 94
           S RF S R+ ++ N  +E    G+     P SD+IF+S PK+GS+++GDSTFYSLI++YA
Sbjct: 28  SMRFHSSRT-LNQNNDLE---NGSEPESSPISDKIFSSPPKMGSFKVGDSTFYSLIENYA 83

Query: 95  NSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV 154
            S DF SLE VL RMR E RV  EKSF  +FKAYGKAHL  +AI LF+ M  EF+CK TV
Sbjct: 84  YSSDFNSLEKVLNRMRLENRVFSEKSFFVMFKAYGKAHLPNKAIELFYRMSFEFYCKPTV 143

Query: 155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQL 214
           KSFNSVLNVIIQ G + RALEFYNH+V AK MNILPN L+FNL+IK++C+LGLVDNAI+L
Sbjct: 144 KSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNAIEL 203

Query: 215 FREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK 274
           FREMPVR C PD YTYCTLMDGLCK +R+DEAV LLDEMQ++GCFP+P TFNVLINGLCK
Sbjct: 204 FREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLINGLCK 263

Query: 275 NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVT 334
            G+  R  KLVDNMFLKGC+PNEVTYNTLIHGLCLKG LDKA+SLLDRMV+SKC+PNEVT
Sbjct: 264 KGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVT 323

Query: 335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMM 394
           YGTIINGLVK GRA+DGARVL+ MEER + VNEY+YS L+SGLFKEGK+E+AM+L+K+ M
Sbjct: 324 YGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESM 383

Query: 395 EKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGH 454
           +KGCK NTV+YSAL+DGLCR  KPDEA +IL EM + GCA NAFT+SSLMKGFFE G  H
Sbjct: 384 DKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSH 443

Query: 455 KAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMI 514
           KA+E+WKDM K NC  NEVCYSVLIHGLC+DGK+ EA MVW +ML+ GC+PDVVAYSSMI
Sbjct: 444 KAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMI 503

Query: 515 HGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG 574
            GLC+AGSVEEALKL+NEMLCLEP SQPDV TYNIL NALCKQS+IS ++DLLNSM+DRG
Sbjct: 504 QGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRG 563

Query: 575 CDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQ 634
           CDPDLVTCNIFL  L+EKL+ PQDG  FL+EL +RL KRQR  G  KIVEVMLQKFLSP+
Sbjct: 564 CDPDLVTCNIFLRMLREKLDPPQDGAKFLDELVVRLLKRQRNLGASKIVEVMLQKFLSPK 623

Query: 635 TSTWERVVQELCRPKRIQAAINKCWSNLY 663
            STW RVV ELC+PK+IQA I+KCWS LY
Sbjct: 624 ASTWARVVHELCQPKKIQAVIDKCWSKLY 652

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa] gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/664 (69%), Positives = 540/664 (81%), Gaps = 18/664 (2%)

Query: 16  TNSAMKMKTLSLTTIPSE----RSHRFFSVRSAVSSNKQMETEP------------QGNA 59
           TNS +K    +L + PS+      H  FS   A+ S K +ETEP            +   
Sbjct: 9   TNSILKALN-NLFSFPSKFLSLSMHSNFSAH-AIPSTKTIETEPLNHTQHCNTTDQENGI 66

Query: 60  KSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEK 119
           + + P SD+IF S PK+GSY+LGDSTFYSLI +YAN GDFKSLE VL RM+ EKRV+ EK
Sbjct: 67  EPDPPISDKIFKSGPKMGSYRLGDSTFYSLINNYANLGDFKSLEKVLDRMKCEKRVIFEK 126

Query: 120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNH 179
            FI IFKAYGKAHL E+A+ LF  M  EF CKRT KSFNSVLNVIIQEGL+HRALEFYNH
Sbjct: 127 CFIVIFKAYGKAHLPEKAVDLFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNH 186

Query: 180 IVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK 239
           ++ AK ++I PN LTFNLVIK +C++GLVD+AIQ+FR+M +R CEPD+YTYCTLMDGLCK
Sbjct: 187 VIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCK 246

Query: 240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVT 299
            +R+DEAV LLDEMQ+DGCFP+PVTFNVLINGLCK G+L RAAKLVDNMFLKGC+PNEVT
Sbjct: 247 ADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVT 306

Query: 300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSME 359
           YNTLIHGLCLKG L+KA+SLLDRMV+SKC+PN VTYGTIINGLVK GRA+DGA VL  ME
Sbjct: 307 YNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALME 366

Query: 360 ERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPD 419
           ER + VNEY+YSTLISGLFKEGK+++AM L+K+M  KG + NT+VYSA+IDGLCR GKPD
Sbjct: 367 ERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPD 426

Query: 420 EAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI 479
           +A E+L EM N GC  NA+T SSLMKGFFE+G  H+AVE+WKDMAK+N   NEVCYSVLI
Sbjct: 427 DAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLI 486

Query: 480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK 539
           HGLC+DGK++EA MVWTQML +GCKPDVVAYSSMI+GL  AG VE+A++L+NEMLC  P 
Sbjct: 487 HGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPD 546

Query: 540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDG 599
           SQPDV TYNILLN LCKQS+IS +IDLLNSM+DRGCDPDLVTC IFL  L+EKL+ PQDG
Sbjct: 547 SQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRMLREKLDPPQDG 606

Query: 600 TDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCW 659
            +FL+EL +RL KRQR  G  KIVEVMLQK L P+ STW RVV+ LC+PK++QA I KCW
Sbjct: 607 REFLDELVVRLLKRQRVLGASKIVEVMLQKLLPPKHSTWARVVENLCKPKKVQAVIQKCW 666

Query: 660 SNLY 663
           S LY
Sbjct: 667 SILY 670

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20090-like [Vitis vinifera]

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/626 (70%), Positives = 525/626 (83%), Gaps = 10/626 (1%)

Query: 38  FFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSG 97
           FFS RS  + +           +S+ P  D+IF S  ++GSY+ GDSTFYSLI++YANSG
Sbjct: 28  FFSFRSKTTLSPY---------ESDAPIPDQIFKSASQMGSYKSGDSTFYSLIENYANSG 78

Query: 98  DFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSF 157
           DF +L  V  RM+RE+RV +EK+FI +F+AYGKAHL E+AI LF  MVDEF C+RTV+SF
Sbjct: 79  DFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSF 138

Query: 158 NSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFRE 217
           NSVLNVIIQEGL+HRALEFY   V  K  NI PN L+FNLVIK +C+LGLVD AI++FRE
Sbjct: 139 NSVLNVIIQEGLFHRALEFYECGVGGK-TNISPNVLSFNLVIKAMCKLGLVDRAIEVFRE 197

Query: 218 MPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGE 277
           M ++ CEPD++TYCTLMDGLCKE+R+DEAVLLLDEMQ++GCFP+ VTFNVLINGLCK G+
Sbjct: 198 MAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGD 257

Query: 278 LGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGT 337
           + R  KLVDNMFLKGC+PNEVTYNT+I+GLCLKG LDKAVSLLDRMVASKC+PN+VTYGT
Sbjct: 258 MVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGT 317

Query: 338 IINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKG 397
           +INGLVK GR+VDG  +L S+EER  H NEY YSTLISGLFKE K+E+AM LWK+M+EKG
Sbjct: 318 LINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG 377

Query: 398 CKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAV 457
           C+PN VVYSALIDGLCR GK DEA+EIL EM+N GC  NAFTYSSL+KGFF++G   KA+
Sbjct: 378 CQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAI 437

Query: 458 EIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGL 517
            +WK+MAKNNCV NE+CYSVLIHGLCEDGKLREA M+WT ML RG +PDVVAYSSMIHGL
Sbjct: 438 RVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGL 497

Query: 518 CNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDP 577
           CNAGSVE  LKLFNEMLC E  SQPDV TYNILL ALCKQ++ISH+IDLLNSM+DRGC+P
Sbjct: 498 CNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNP 557

Query: 578 DLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTST 637
           DL+TCNIFL AL+EKL  PQDG +FL+EL +RL KRQR  G  KI+EVMLQKFL P  ST
Sbjct: 558 DLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNAST 617

Query: 638 WERVVQELCRPKRIQAAINKCWSNLY 663
           WER++ ELC+PK++QA I+KCWS+L+
Sbjct: 618 WERIIPELCKPKKVQAIIDKCWSSLF 643

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/595 (73%), Positives = 512/595 (86%), Gaps = 1/595 (0%)

Query: 69  IFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAY 128
           IF S  ++GSY+ GDSTFYSLI++YANSGDF +L  V  RM+RE+RV +EK+FI +F+AY
Sbjct: 66  IFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAY 125

Query: 129 GKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNI 188
           GKAHL E+AI LF  MVDEF C+RTV+SFNSVLNVIIQEGL+HRALEFY   V  K  NI
Sbjct: 126 GKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGK-TNI 184

Query: 189 LPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVL 248
            PN L+FNLVIK +C+LGLVD AI++FREM ++ CEPD++TYCTLMDGLCKE+R+DEAVL
Sbjct: 185 SPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVL 244

Query: 249 LLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLC 308
           LLDEMQ++GCFP+ VTFNVLINGLCK G++ R  KLVDNMFLKGC+PNEVTYNT+I+GLC
Sbjct: 245 LLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 304

Query: 309 LKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEY 368
           LKG LDKAVSLLDRMVASKC+PN+VTYGT+INGLVK GR+VDG  +L S+EER  H NEY
Sbjct: 305 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 364

Query: 369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEM 428
            YSTLISGLFKE K+E+AM LWK+M+EKGC+PN VVYSALIDGLCR GK DEA+EIL EM
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 429 INNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKL 488
           +N GC  NAFTYSSL+KGFF++G   KA+ +WK+MAKNNCV NE+CYSVLIHGLCEDGKL
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 484

Query: 489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYN 548
           REA M+WT ML RG +PDVVAYSSMIHGLCNAGSVE  LKLFNEMLC E  SQPDV TYN
Sbjct: 485 REAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN 544

Query: 549 ILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAI 608
           ILL ALCKQ++ISH+IDLLNSM+DRGC+PDL+TCNIFL AL+EKL  PQDG +FL+EL +
Sbjct: 545 ILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVV 604

Query: 609 RLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNLY 663
           RL KRQR  G  KI+EVMLQKFL P  STWER++ ELC+PK++QA I+KCWS+L+
Sbjct: 605 RLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIIDKCWSSLF 659

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata] gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]

 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/628 (65%), Positives = 509/628 (81%), Gaps = 6/628 (0%)

Query: 37  RFFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANS 96
           RF +   +VS N  ME E       E P S+++F S PK+GS++LGDST  S+I++YAN 
Sbjct: 35  RFSASSVSVSPNPSMEVE----TPLEAPISEQMFKSAPKMGSFKLGDSTLSSMIENYANL 90

Query: 97  GDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKS 156
           GDF S+E +L R+R E RV++E+SFI +F+AYGKAHL E+A+ LFH MVDEF CKR+VKS
Sbjct: 91  GDFASVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPEKAVDLFHRMVDEFRCKRSVKS 150

Query: 157 FNSVLNVIIQEGLYHRALEFYNHIVNAK-HMNILPNTLTFNLVIKTVCRLGLVDNAIQLF 215
           FNSVLNVII EGLYHR LEFY+++VN+  +MNI PN L+FNLVIK +C+LG VD AI++F
Sbjct: 151 FNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVF 210

Query: 216 REMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN 275
           R MP + C PD YTYCTLMDGLCKE R+DEAVLLLDEMQ +GC P+PV +NVLI+GLCK 
Sbjct: 211 RGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKK 270

Query: 276 GELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTY 335
           G+L R  KLVDNMFLKGC PNEVTYNTLIHGLCLKG LDKAVSLL+RMV+SKC+PN+VTY
Sbjct: 271 GDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTY 330

Query: 336 GTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMME 395
           GT+INGLVK  RA+DGAR+L+SMEER + +N++IYS LISGLFKEGKAE+AM LWK+M E
Sbjct: 331 GTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAE 390

Query: 396 KGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHK 455
           KGC+PN VVYSA+IDGLCR GKP+EA+EIL  MI++GC  N +TYSSLMKGFF++G   +
Sbjct: 391 KGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEE 450

Query: 456 AVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIH 515
           A+++W++M +  C  NE CYSVLI GLC  G+++EA MVW++ML+ G KPD VAYSSMI 
Sbjct: 451 AIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIK 510

Query: 516 GLCNAGSVEEALKLFNEMLCL-EPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG 574
           GLC  GS++ ALKL++EMLC  EPKSQPDV TYNILL+ LC Q ++S ++DLLN M+DRG
Sbjct: 511 GLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRG 570

Query: 575 CDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQ 634
           CDPD++TCN FL  L EK ++ ++G  FL EL  RL KRQR SG  KIVEVML K+L+P+
Sbjct: 571 CDPDVITCNTFLNTLSEKSDSCEEGRSFLEELVARLLKRQRVSGACKIVEVMLGKYLAPK 630

Query: 635 TSTWERVVQELCRPKRIQAAINKCWSNL 662
           TSTW  +V E+C+PK+I AAINKCW NL
Sbjct: 631 TSTWAMIVPEICKPKKINAAINKCWRNL 658

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis thaliana] gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis thaliana] gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana] gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  863 bits (2231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/603 (66%), Positives = 494/603 (81%), Gaps = 2/603 (0%)

Query: 62  EQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSF 121
           E P S+++F S PK+GS++LGDST  S+I+ YANSGDF S+E +L R+R E RV++E+SF
Sbjct: 56  EAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSF 115

Query: 122 IFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIV 181
           I +F+AYGKAHL ++A+ LFH MVDEF CKR+VKSFNSVLNVII EGLYHR LEFY+++V
Sbjct: 116 IVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVV 175

Query: 182 NAK-HMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE 240
           N+  +MNI PN L+FNLVIK +C+L  VD AI++FR MP R C PD YTYCTLMDGLCKE
Sbjct: 176 NSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKE 235

Query: 241 NRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTY 300
            R+DEAVLLLDEMQ +GC P+PV +NVLI+GLCK G+L R  KLVDNMFLKGC+PNEVTY
Sbjct: 236 ERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTY 295

Query: 301 NTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEE 360
           NTLIHGLCLKG LDKAVSLL+RMV+SKC+PN+VTYGT+INGLVK  RA D  R+L SMEE
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEE 355

Query: 361 RKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDE 420
           R +H+N++IYS LISGLFKEGKAE+AM LW++M EKGCKPN VVYS L+DGLCR GKP+E
Sbjct: 356 RGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNE 415

Query: 421 AEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIH 480
           A+EIL  MI +GC  NA+TYSSLMKGFF++G   +AV++WK+M K  C  N+ CYSVLI 
Sbjct: 416 AKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLID 475

Query: 481 GLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCL-EPK 539
           GLC  G+++EA MVW++ML+ G KPD VAYSS+I GLC  GS++ ALKL++EMLC  EPK
Sbjct: 476 GLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPK 535

Query: 540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDG 599
           SQPDV TYNILL+ LC Q +IS ++DLLNSM+DRGCDPD++TCN FL  L EK  +   G
Sbjct: 536 SQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKG 595

Query: 600 TDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCW 659
             FL EL +RL KRQR SG   IVEVML K+L+P+TSTW  +V+E+C+PK+I AAI+KCW
Sbjct: 596 RSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREICKPKKINAAIDKCW 655

Query: 660 SNL 662
            NL
Sbjct: 656 RNL 658

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20090-like [Glycine max]

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/595 (67%), Positives = 488/595 (82%)

Query: 68  EIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKA 127
           EIF S  ++GSY+LGD +FYSLI+ +A+S DF+SLE VL++M+RE+RV LEK+FI +FKA
Sbjct: 46  EIFKSGTQMGSYKLGDLSFYSLIESHASSLDFRSLEEVLHQMKRERRVFLEKNFIVMFKA 105

Query: 128 YGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMN 187
           YGKAHL E+A+ LFH M  EF CK+TVKSFNSVLNVI+QEGL++RALEFYNH+V +K +N
Sbjct: 106 YGKAHLPEKAVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLN 165

Query: 188 ILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAV 247
           I PN LTFNLVIK +CRLGLVD AI++FRE+P+RNC PD YTY TLM GLCKE R+DEAV
Sbjct: 166 IHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAV 225

Query: 248 LLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGL 307
            LLDEMQV+G FP  V FNVLI+ LCK G+LGRAAKLVDNMFLKGC+PNEVTYN L+HGL
Sbjct: 226 SLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGL 285

Query: 308 CLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNE 367
           CLKG L+KAVSLL++MV++KC+PN+VT+GT+ING V  GRA DG RVL+S+E R    NE
Sbjct: 286 CLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNE 345

Query: 368 YIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFE 427
           Y+YS+LISGL KEGK   AM+LWK+M+ KGC PNT+VYSALIDGLCR GK DEA   L E
Sbjct: 346 YVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSE 405

Query: 428 MINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGK 487
           M N G   N+FTYSSLM+G+FE+G  HKA+ +WK+MA NNC++NEVCYS+LI+GLC+DGK
Sbjct: 406 MKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGK 465

Query: 488 LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTY 547
             EA MVW QMLSRG K DVVAYSSMIHG CNA  VE+ LKLFN+MLC  P  QPDV TY
Sbjct: 466 FMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITY 525

Query: 548 NILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELA 607
           NILLNA C Q +I  +ID+LN M+D+GCDPD +TC+IFL  L+E +  PQDG +FL+EL 
Sbjct: 526 NILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMNPPQDGREFLDELV 585

Query: 608 IRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662
           +RL KRQRT G  KI+EVM+ KFL P+ STW  VVQ++C+PK ++ AI++CWS L
Sbjct: 586 VRLVKRQRTIGASKIIEVMMHKFLLPKASTWAMVVQQVCKPKNVRKAISECWSRL 640

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20090-like [Cucumis sativus] gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20090-like [Cucumis sativus]

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/634 (62%), Positives = 483/634 (76%), Gaps = 6/634 (0%)

Query: 31  PSERSHRFFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLI 90
           P+  S  F+     +SSN         +A++E   S +IF S P+ GSY+LGD+TFY LI
Sbjct: 43  PARLSPFFYFSSLPLSSNST------PDAQNELSISPQIFKSRPQFGSYKLGDATFYRLI 96

Query: 91  QHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHC 150
           ++YA S +F  +  VL RM+RE RV+ E  FI IFKA GKAHL  EA+  FH M ++ HC
Sbjct: 97  ENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLHC 156

Query: 151 KRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDN 210
           K+TVKSFNSVLNVIIQEG +  A +FY H+  A      PN LT+NL+IK +C+LG +D 
Sbjct: 157 KQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDR 216

Query: 211 AIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLIN 270
           A+  FREMP++NC PD++TY TLM+GLCKE R+DEAV LLDEMQ +GC P PVTFNVLI+
Sbjct: 217 AVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLID 276

Query: 271 GLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMP 330
            L KNG+L RAAKLVDNMFLKGC+PNEVTYNTLIHGLCLKG LDKA+SLL++MV+SKC+P
Sbjct: 277 ALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVP 336

Query: 331 NEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLW 390
           N+VTYGTIINGLVK  RA DG  +LMSMEER    NEYIYS+LISGLFKEGK+E+A++LW
Sbjct: 337 NQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLW 396

Query: 391 KQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES 450
           K+M EKGCKPN VVY A IDGLCR  KPDEAE+IL EM++ G   NAFTYSSLMKGFF+ 
Sbjct: 397 KEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKK 456

Query: 451 GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY 510
           G   KA+ +WK+M   +  +N VC SVL++GLCE G+LREA  VWT ML  G KPDVVAY
Sbjct: 457 GDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAY 516

Query: 511 SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSM 570
           SSMI GLC+ GSV++ LKLF EM C EPKS+PDV TYNIL NALC+Q N++ +IDLLNSM
Sbjct: 517 SSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSM 576

Query: 571 MDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKF 630
           +D GCDPD +TCNIFL  L+E++  PQDG  FL+EL +RL KR+R     +IVE ML +F
Sbjct: 577 LDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERKLSALRIVEEMLLRF 636

Query: 631 LSPQTSTWERVVQELCRPKRIQAAINKCWSNLYG 664
           L P+ STW RV+Q  C+PKRI+  I++C  +LYG
Sbjct: 637 LPPEPSTWSRVIQRTCKPKRIRETIDECCRSLYG 670

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20090-like [Cucumis sativus]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/641 (62%), Positives = 489/641 (76%), Gaps = 7/641 (1%)

Query: 24  TLSLTTIPSERSHRFFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGD 83
           T+SL   P+  S  F+     +SSN    + P  +A++E   S +IF S P+ GSY+LGD
Sbjct: 13  TISLHK-PARLSPFFYFSSLPLSSN----STP--DAQNELSISPQIFKSRPQFGSYKLGD 65

Query: 84  STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHT 143
           +TFY LI++YA S +F  +  VL RM+RE RV+ E  FI IFKA GKAHL  EA+  FH 
Sbjct: 66  ATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHR 125

Query: 144 MVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVC 203
           M ++ HCK+TVKSFNSVLNVIIQEG +  A +FY H+  A      PN LT+NL+IK +C
Sbjct: 126 MANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALC 185

Query: 204 RLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPV 263
           +LG +D A+  FREMP++NC PD++TY TLM+GLCKE R+DEAV LLDEMQ +GC P PV
Sbjct: 186 KLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPV 245

Query: 264 TFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRM 323
           TFNVLI+ L KNG+L RAAKLVDNMFLKGC+PNEVTYNTLIHGLCLKG LDKA+SLL++M
Sbjct: 246 TFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKM 305

Query: 324 VASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKA 383
           V+SKC+PN+VTYGTIINGLVK  RA DG  +LMSMEER    NEYIYS+LISGLFKEGK+
Sbjct: 306 VSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKS 365

Query: 384 EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSL 443
           E+A++LWK+M EKGCKPN VVY A IDGLCR  KPDEAE+IL EM++ G   NAFTYSSL
Sbjct: 366 ENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSL 425

Query: 444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC 503
           MKGFF+ G   KA+ +WK+M   +  +N VC SVL++GLCE G+LREA  VWT ML  G 
Sbjct: 426 MKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGL 485

Query: 504 KPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHS 563
           KPDVVAYSSMI GLC+ GSV++ LKLF EM C EPKS+PDV TYNIL NALC+Q N++ +
Sbjct: 486 KPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRA 545

Query: 564 IDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIV 623
           IDLLNSM+D GCDPD +TCNIFL  L+E++  PQDG  FL+EL +RL KR+R     +IV
Sbjct: 546 IDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERKLSALRIV 605

Query: 624 EVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNLYG 664
           E ML +FL P+ STW RV+Q  C+PKRI+  I++C  +LYG
Sbjct: 606 EEMLLRFLPPEPSTWSRVIQRTCKPKRIRETIDECCRSLYG 646

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	664
TAIR|locus:2119747	660	EMB1025 "embryo defective 1025	0.939	0.945	0.653	2.4e-227
TAIR|locus:2173403	730	AT5G64320 "AT5G64320" [Arabido	0.802	0.730	0.329	3.4e-77
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.930	0.819	0.286	8.1e-76
TAIR|locus:2019085	763	AT1G74580 "AT1G74580" [Arabido	0.777	0.676	0.313	1.2e-72
TAIR|locus:2015208	630	AT1G63130 [Arabidopsis thalian	0.621	0.655	0.362	2.4e-69
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.631	0.700	0.326	2.7e-68
TAIR|locus:2034760	637	AT1G12300 [Arabidopsis thalian	0.603	0.629	0.344	1.3e-66
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.685	0.609	0.320	1.7e-66
TAIR|locus:2015228	614	AT1G63080 [Arabidopsis thalian	0.649	0.701	0.328	5.8e-66
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.603	0.636	0.334	1.5e-65

TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)]

 Score = 2194 (777.4 bits), Expect = 2.4e-227, P = 2.4e-227
 Identities = 411/629 (65%), Positives = 503/629 (79%)

Query:    36 HRFFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYAN 95
             H  FS   +VS N  ME         E P S+++F S PK+GS++LGDST  S+I+ YAN
Sbjct:    33 HLRFSSSVSVSPNPSMEVVEN---PLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYAN 89

Query:    96 SGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK 155
             SGDF S+E +L R+R E RV++E+SFI +F+AYGKAHL ++A+ LFH MVDEF CKR+VK
Sbjct:    90 SGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVK 149

Query:   156 SFNSVLNVIIQEGLYHRALEFYNHIVNAK-HMNILPNTLTFNLVIKTVCRLGLVDNAIQL 214
             SFNSVLNVII EGLYHR LEFY+++VN+  +MNI PN L+FNLVIK +C+L  VD AI++
Sbjct:   150 SFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEV 209

Query:   215 FREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK 274
             FR MP R C PD YTYCTLMDGLCKE R+DEAVLLLDEMQ +GC P+PV +NVLI+GLCK
Sbjct:   210 FRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCK 269

Query:   275 NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVT 334
              G+L R  KLVDNMFLKGC+PNEVTYNTLIHGLCLKG LDKAVSLL+RMV+SKC+PN+VT
Sbjct:   270 KGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVT 329

Query:   335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMM 394
             YGT+INGLVK  RA D  R+L SMEER +H+N++IYS LISGLFKEGKAE+AM LW++M 
Sbjct:   330 YGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMA 389

Query:   395 EKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGH 454
             EKGCKPN VVYS L+DGLCR GKP+EA+EIL  MI +GC  NA+TYSSLMKGFF++G   
Sbjct:   390 EKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCE 449

Query:   455 KAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMI 514
             +AV++WK+M K  C  N+ CYSVLI GLC  G+++EA MVW++ML+ G KPD VAYSS+I
Sbjct:   450 EAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSII 509

Query:   515 HGLCNAGSVEEALKLFNEMLCLE-PKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDR 573
              GLC  GS++ ALKL++EMLC E PKSQPDV TYNILL+ LC Q +IS ++DLLNSM+DR
Sbjct:   510 KGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDR 569

Query:   574 GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSP 633
             GCDPD++TCN FL  L EK  +   G  FL EL +RL KRQR SG   IVEVML K+L+P
Sbjct:   570 GCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAP 629

Query:   634 QTSTWERVVQELCRPKRIQAAINKCWSNL 662
             +TSTW  +V+E+C+PK+I AAI+KCW NL
Sbjct:   630 KTSTWAMIVREICKPKKINAAIDKCWRNL 658

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 180/546 (32%), Positives = 289/546 (52%)

Query:    66 SDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIF 125
             S E+F+ T     Y+     +  LI     +G+FK+++ +L +M+ E  V  E  FI I 
Sbjct:    94 SMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIM 153

Query:   126 KAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKH 185
             + Y KA    +  RL   M + + C+ T KS+N VL +++    +  A   +  +++ K 
Sbjct:   154 RDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRK- 212

Query:   186 MNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDE 245
               I P   TF +V+K  C +  +D+A+ L R+M    C P+   Y TL+  L K NR++E
Sbjct:   213 --IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNE 270

Query:   246 AVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIH 305
             A+ LL+EM + GC P   TFN +I GLCK   +  AAK+V+ M ++G  P+++TY  L++
Sbjct:   271 ALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMN 330

Query:   306 GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV 365
             GLC  G +D A  L  R+      P  V + T+I+G V  GR  D   VL  M      V
Sbjct:   331 GLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV 386

Query:   366 NEYI-YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEI 424
              +   Y++LI G +KEG    A+++   M  KGCKPN   Y+ L+DG C++GK DEA  +
Sbjct:   387 PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNV 446

Query:   425 LFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE 484
             L EM  +G   N   ++ L+  F +  +  +AVEI+++M +  C  +   ++ LI GLCE
Sbjct:   447 LNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 506

Query:   485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP-D 543
               +++ A  +   M+S G   + V Y+++I+     G ++EA KL NEM+    +  P D
Sbjct:   507 VDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF---QGSPLD 563

Query:   544 VFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFL 603
               TYN L+  LC+   +  +  L   M+  G  P  ++CNI +  L       ++  +F 
Sbjct:   564 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRS-GMVEEAVEFQ 622

Query:   604 NELAIR 609
              E+ +R
Sbjct:   623 KEMVLR 628

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 183/639 (28%), Positives = 326/639 (51%)

Query:    24 TLSLTTIPSERSHRFFSVRSAVSSNKQMETEPQGNAKSEQPFSDEIFNSTPKLGSYQLGD 83
             + SL   P   +  F S  SA  S+  ++      ++ +   +  +FN   K  ++    
Sbjct:    24 SFSLNLTPPSSTISFASPHSAALSSTDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEP 83

Query:    84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHT 143
             + +  ++     SG F  ++ +L  M+  +  +   +F+ + ++Y +  L +E + +   
Sbjct:    84 ALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDW 143

Query:   144 MVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVC 203
             M+DEF  K     +N +LN+++ +G   + +E  +H        I P+  TFN++IK +C
Sbjct:   144 MIDEFGLKPDTHFYNRMLNLLV-DGNSLKLVEI-SH-AKMSVWGIKPDVSTFNVLIKALC 200

Query:   204 RLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPV 263
             R   +  AI +  +MP     PD  T+ T+M G  +E  LD A+ + ++M   GC  + V
Sbjct:   201 RAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNV 260

Query:   264 TFNVLINGLCKNGELGRAAKLVDNMFLK-GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDR 322
             + NV+++G CK G +  A   +  M  + G  P++ T+NTL++GLC  G++  A+ ++D 
Sbjct:   261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320

Query:   323 MVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGK 382
             M+     P+  TY ++I+GL KLG   +   VL  M  R    N   Y+TLIS L KE +
Sbjct:   321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380

Query:   383 AEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSS 442
              E+A +L + +  KG  P+   +++LI GLC       A E+  EM + GC  + FTY+ 
Sbjct:   381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440

Query:   443 LMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG 502
             L+      GK  +A+ + K M  + C  + + Y+ LI G C+  K REA  ++ +M   G
Sbjct:   441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG 500

Query:   503 CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH 562
                + V Y+++I GLC +  VE+A +L ++M+ +E + +PD +TYN LL   C+  +I  
Sbjct:   501 VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI-MEGQ-KPDKYTYNSLLTHFCRGGDIKK 558

Query:   563 SIDLLNSMMDRGCDPDLVTCNIFLTAL--------KEKL--EAPQDGTDFL----NELAI 608
             + D++ +M   GC+PD+VT    ++ L          KL       G +      N +  
Sbjct:   559 AADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQ 618

Query:   609 RLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVV-QELC 646
              LF++++T+    +   ML++  +P  +   R+V + LC
Sbjct:   619 GLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLC 657

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 164/523 (31%), Positives = 277/523 (52%)

Query:    68 EIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREK-RVVLEKSFIFIFK 126
             E+FNS  K   ++   ST+ S+I+     G F+++E VL  MR      +LE  ++   K
Sbjct:    25 EMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMK 84

Query:   127 AYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHM 186
              YG+   V+EA+ +F  M D + C+ TV S+N++++V++  G + +A + Y   +  +  
Sbjct:    85 NYGRKGKVQEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVY---MRMRDR 140

Query:   187 NILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEA 246
              I P+  +F + +K+ C+      A++L   M  + CE ++  YCT++ G  +EN   E 
Sbjct:   141 GITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEG 200

Query:   247 VLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHG 306
               L  +M   G      TFN L+  LCK G++    KL+D +  +G LPN  TYN  I G
Sbjct:   201 YELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQG 260

Query:   307 LCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVN 366
             LC +G LD AV ++  ++     P+ +TY  +I GL K  +  +    L  M       +
Sbjct:   261 LCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPD 320

Query:   367 EYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILF 426
              Y Y+TLI+G  K G  + A ++    +  G  P+   Y +LIDGLC  G+ + A  +  
Sbjct:   321 SYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFN 380

Query:   427 EMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG 486
             E +  G   N   Y++L+KG    G   +A ++  +M++   +     +++L++GLC+ G
Sbjct:   381 EALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMG 440

Query:   487 KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFT 546
              + +A  +   M+S+G  PD+  ++ +IHG      +E AL++ + ML  +    PDV+T
Sbjct:   441 CVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVML--DNGVDPDVYT 498

Query:   547 YNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL 589
             YN LLN LCK S     ++   +M+++GC P+L T NI L +L
Sbjct:   499 YNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 153/422 (36%), Positives = 240/422 (56%)

Query:   181 VNAKHMNI--LPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLC 238
             V AK M +   P+ +T N ++   C    + +A+ L  +M     +PD +T+ TL+ GL 
Sbjct:   138 VLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF 197

Query:   239 KENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEV 298
             + NR  EAV L+D M V GC P  VT+ +++NGLCK G++  A  L+  M      P  V
Sbjct:   198 RHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV 257

Query:   299 TYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSM 358
              YNT+I  LC   N++ A++L   M      PN VTY ++I  L   GR  D +R+L  M
Sbjct:   258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317

Query:   359 EERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKP 418
              ERK + N   +S LI    KEGK  +A KL+ +M+++   P+   YS+LI+G C   + 
Sbjct:   318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377

Query:   419 DEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVL 478
             DEA+ +   MI+  C  N  TY++L+KGF ++ +  + +E++++M++   V N V Y+ L
Sbjct:   378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437

Query:   479 IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP 538
             IHG  +  +   A++V+ QM+S G  PD++ YS ++ GLCN G VE AL +F E L    
Sbjct:   438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVF-EYL-QRS 495

Query:   539 KSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA-----LKEKL 593
             K +PD++TYNI++  +CK   +    DL  S+  +G  P++VT    ++      LKE+ 
Sbjct:   496 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 555

Query:   594 EA 595
             +A
Sbjct:   556 DA 557

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 139/426 (32%), Positives = 243/426 (57%)

Query:   189 LPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVL 248
             +P+ +T+N++I   C+ G ++NA+ +   M V    PD+ TY T++  LC   +L +A+ 
Sbjct:   169 VPDVITYNVMISGYCKAGEINNALSVLDRMSV---SPDVVTYNTILRSLCDSGKLKQAME 225

Query:   249 LLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLC 308
             +LD M    C+P  +T+ +LI   C++  +G A KL+D M  +GC P+ VTYN L++G+C
Sbjct:   226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query:   309 LKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEY 368
              +G LD+A+  L+ M +S C PN +T+  I+  +   GR +D  ++L  M  + F  +  
Sbjct:   286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query:   369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEM 428
              ++ LI+ L ++G    A+ + ++M + GC+PN++ Y+ L+ G C+  K D A E L  M
Sbjct:   346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query:   429 INNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKL 488
             ++ GC  +  TY++++    + GK   AVEI   ++   C    + Y+ +I GL + GK 
Sbjct:   406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query:   489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYN 548
              +A  +  +M ++  KPD + YSS++ GL   G V+EA+K F+E   +  +  P+  T+N
Sbjct:   466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIR--PNAVTFN 523

Query:   549 ILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAI 608
              ++  LCK      +ID L  M++RGC P+  +  I +  L  +  A ++  + LNEL  
Sbjct:   524 SIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMA-KEALELLNELCN 582

Query:   609 R-LFKR 613
             + L K+
Sbjct:   583 KGLMKK 588

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 139/403 (34%), Positives = 234/403 (58%)

Query:   190 PNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLL 249
             PNT+TF+ +I  +C  G V  A++L   M     +PD+ T  TL++GLC   +  EA+LL
Sbjct:   156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 215

Query:   250 LDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL 309
             +D+M   GC P  VT+  ++N +CK+G+   A +L+  M  +    + V Y+ +I GLC 
Sbjct:   216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275

Query:   310 KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYI 369
              G+LD A +L + M       N +TY  +I G    GR  DGA++L  M +RK + N   
Sbjct:   276 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 335

Query:   370 YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMI 429
             +S LI    KEGK  +A +L K+M+ +G  P+T+ Y++LIDG C+    D+A +++  M+
Sbjct:   336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 395

Query:   430 NNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR 489
             + GC  N  T++ L+ G+ ++ +    +E+++ M+    V + V Y+ LI G CE GKL 
Sbjct:   396 SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN 455

Query:   490 EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI 549
              A+ ++ +M+SR   P++V Y  ++ GLC+ G  E+AL++F ++   + K + D+  YNI
Sbjct:   456 VAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE--KSKMELDIGIYNI 513

Query:   550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEK 592
             +++ +C  S +  + DL  S+  +G  P + T NI +  L +K
Sbjct:   514 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKK 556

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 148/462 (32%), Positives = 251/462 (54%)

Query:   121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHI 180
             F  + K+Y +  L+++A+ + H +         V S+N+VL+  I+     R + F  ++
Sbjct:   137 FDLVVKSYSRLSLIDKALSIVH-LAQAHGFMPGVLSYNAVLDATIRS---KRNISFAENV 192

Query:   181 VNAK-HMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK 239
                     + PN  T+N++I+  C  G +D A+ LF +M  + C P++ TY TL+DG CK
Sbjct:   193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252

Query:   240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVT 299
               ++D+   LL  M + G  P  +++NV+INGLC+ G +   + ++  M  +G   +EVT
Sbjct:   253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVT 312

Query:   300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSME 359
             YNTLI G C +GN  +A+ +   M+     P+ +TY ++I+ + K G        L  M 
Sbjct:   313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372

Query:   360 ERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPD 419
              R    NE  Y+TL+ G  ++G   +A ++ ++M + G  P+ V Y+ALI+G C  GK +
Sbjct:   373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432

Query:   420 EAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI 479
             +A  +L +M   G + +  +YS+++ GF  S    +A+ + ++M +     + + YS LI
Sbjct:   433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492

Query:   480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK 539
              G CE  + +EA  ++ +ML  G  PD   Y+++I+  C  G +E+AL+L NEM+  E  
Sbjct:   493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV--EKG 550

Query:   540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT 581
               PDV TY++L+N L KQS    +  LL  +      P  VT
Sbjct:   551 VLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVT 592

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 144/438 (32%), Positives = 245/438 (55%)

Query:   156 SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLF 215
             ++N ++N + +      AL     ++    +   P+ +T N ++   C    +  A+ L 
Sbjct:   102 TYNIMINCLCRRSQLSFALAILGKMMK---LGYGPSIVTLNSLLNGFCHGNRISEAVALV 158

Query:   216 REMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN 275
              +M     +PD  T+ TL+ GL + N+  EAV L++ M V GC P  VT+  +INGLCK 
Sbjct:   159 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 218

Query:   276 GELGRAAKLVDNMFLKGCLPNEVT-YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVT 334
             GE   A  L++ M  KG +  +V  Y+T+I  LC   ++D A++L   M      P+  T
Sbjct:   219 GEPDLALNLLNKME-KGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFT 277

Query:   335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMM 394
             Y ++I+ L   GR  D +R+L  M ERK + N   +++LI    KEGK  +A KL+ +M+
Sbjct:   278 YSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI 337

Query:   395 EKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGH 454
             ++   PN V Y++LI+G C   + DEA++I   M++  C  +  TY++L+ GF ++ K  
Sbjct:   338 QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVV 397

Query:   455 KAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMI 514
               +E+++DM++   V N V Y+ LIHG  +      A+MV+ QM+S G  P+++ Y++++
Sbjct:   398 DGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLL 457

Query:   515 HGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG 574
              GLC  G +E+A+ +F E L  + K +PD++TYNI+   +CK   +    DL  S+  +G
Sbjct:   458 DGLCKNGKLEKAMVVF-EYL-QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515

Query:   575 CDPDLVTCNIFLTALKEK 592
               PD++  N  ++   +K
Sbjct:   516 VKPDVIAYNTMISGFCKK 533

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 135/403 (33%), Positives = 231/403 (57%)

Query:   190 PNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLL 249
             PN +T + ++   C    +  A+ L  +M V   +P+  T+ TL+ GL   N+  EA+ L
Sbjct:   149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208

Query:   250 LDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL 309
             +D M   GC P  VT+ V++NGLCK G+   A  L++ M      P  + YNT+I GLC 
Sbjct:   209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268

Query:   310 KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYI 369
               ++D A++L   M      PN VTY ++I+ L   GR  D +R+L  M ERK + + + 
Sbjct:   269 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 328

Query:   370 YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMI 429
             +S LI    KEGK  +A KL+ +M+++   P+ V YS+LI+G C   + DEA+++   M+
Sbjct:   329 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMV 388

Query:   430 NNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR 489
             +  C  +  TY++L+KGF +  +  + +E++++M++   V N V Y++LI GL + G   
Sbjct:   389 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 448

Query:   490 EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI 549
              A+ ++ +M+S G  P+++ Y++++ GLC  G +E+A+ +F E L    K +P ++TYNI
Sbjct:   449 MAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF-EYL-QRSKMEPTIYTYNI 506

Query:   550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEK 592
             ++  +CK   +    DL  ++  +G  PD+V  N  ++    K
Sbjct:   507 MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRK 549

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49436	PP327_ARATH	No assigned EC number	0.6683	0.9051	0.9106	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	664
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-30
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-26
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-20
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-19
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-17
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-17
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-17
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-17
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	8e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-14
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-13
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-12
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-12
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-11
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-11
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-09
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	8e-08
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-06
pfam01535	31	pfam01535, PPR, PPR repeat	1e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-06
pfam01535	31	pfam01535, PPR, PPR repeat	5e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	7e-06
pfam01535	31	pfam01535, PPR, PPR repeat	8e-06
pfam01535	31	pfam01535, PPR, PPR repeat	9e-06
pfam01535	31	pfam01535, PPR, PPR repeat	2e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	7e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-04
pfam01535	31	pfam01535, PPR, PPR repeat	4e-04
pfam01535	31	pfam01535, PPR, PPR repeat	5e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-04
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.003
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.003
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  128 bits (323), Expect = 1e-30
 Identities = 103/407 (25%), Positives = 175/407 (42%), Gaps = 50/407 (12%)

Query: 183 AKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENR 242
           AK +   P   TFN+++        +D A+++ R +     + D   Y TL+    K  +
Sbjct: 429 AKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487

Query: 243 LDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNT 302
           +D    +  EM   G      TF  LI+G  + G++ +A      M  K   P+ V +N 
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547

Query: 303 LIHGLCLKGNLDKAVSLLDRMVASK--CMPNEVTYGTIINGLVKLGRAVDGAR-VLMSME 359
           LI      G +D+A  +L  M A      P+ +T G ++      G+ VD A+ V   + 
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ-VDRAKEVYQMIH 606

Query: 360 ERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPD 419
           E        +Y+  ++   ++G  + A+ ++  M +KG KP+ V +SAL+D     G  D
Sbjct: 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666

Query: 420 EAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI 479
           +A EIL +    G      +YSSLM     +    KA+E+++D+                
Sbjct: 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK--------------- 711

Query: 480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEM----LC 535
                               S   +P V   +++I  LC    + +AL++ +EM    LC
Sbjct: 712 --------------------SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751

Query: 536 LEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC 582
                 P+  TY+ILL A  ++ +    +DLL+   + G  P+LV C
Sbjct: 752 ------PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  113 bits (284), Expect = 6e-26
 Identities = 82/340 (24%), Positives = 155/340 (45%), Gaps = 8/340 (2%)

Query: 260 PTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSL 319
           PT  TFN+L++    + ++  A +++  +   G   +   Y TLI      G +D    +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 320 LDRMVASKCMPNEVTYGTIINGLVKLGRAVD--GARVLMSMEERKFHVNEYIYSTLISGL 377
              MV +    N  T+G +I+G  + G+     GA  +M    +    +  +++ LIS  
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR--SKNVKPDRVVFNALISAC 552

Query: 378 FKEGKAEDAMKLWKQMM--EKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA 435
            + G  + A  +  +M        P+ +   AL+      G+ D A+E+   +       
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612

Query: 436 NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVW 495
               Y+  +    + G    A+ I+ DM K     +EV +S L+      G L +A  + 
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672

Query: 496 TQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC 555
                +G K   V+YSS++    NA + ++AL+L+ ++  +  K +P V T N L+ ALC
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI--KLRPTVSTMNALITALC 730

Query: 556 KQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEA 595
           + + +  ++++L+ M   G  P+ +T +I L A + K +A
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 96.1 bits (239), Expect = 2e-20
 Identities = 102/440 (23%), Positives = 182/440 (41%), Gaps = 65/440 (14%)

Query: 82  GDSTFY-SLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRL 140
            D +   SLIQ Y + G +   E V  RM  +  V    S+  +   Y K  L ++A+  
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALET 376

Query: 141 FHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMN--ILPNTLTFNLV 198
           +  M ++ +      +  SVL+     G     ++ +        ++  ++ N L   + 
Sbjct: 377 YALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL-IEMY 434

Query: 199 IKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGC 258
            K  C    +D A+++F  +P    E D+ ++ +++ GL   NR  EA++   +M +   
Sbjct: 435 SKCKC----IDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-L 485

Query: 259 FPTPVTFNVLINGLCKNGEL--GR---AAKLVDNMFLKGCLPNE---------------- 297
            P  VT    ++   + G L  G+   A  L   +   G LPN                 
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545

Query: 298 ---------VTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRA 348
                    V++N L+ G    G    AV L +RMV S   P+EVT+ +++    + G  
Sbjct: 546 QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605

Query: 349 VDGARVLMSMEERKFHV--NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYS 406
             G     SMEE K+ +  N   Y+ ++  L + GK  +A     +M      P+  V+ 
Sbjct: 606 TQGLEYFHSMEE-KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWG 661

Query: 407 ALIDGLCRVGKPDE----AEEILFEMINNGCAANAFTYSSLMKGFF-ESGKGHKAVEIWK 461
           AL++  CR+ +  E    A + +FE+       N+  Y  L+   + ++GK  +   + K
Sbjct: 662 ALLNA-CRIHRHVELGELAAQHIFEL-----DPNSVGYYILLCNLYADAGKWDEVARVRK 715

Query: 462 DMAKNNCVYNEVCYSVLIHG 481
            M +N    +  C  V + G
Sbjct: 716 TMRENGLTVDPGCSWVEVKG 735

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 92.6 bits (230), Expect = 2e-19
 Identities = 84/361 (23%), Positives = 158/361 (43%), Gaps = 30/361 (8%)

Query: 177 YNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDG 236
           Y H+ ++      P+    N V+    + G++ +A +LF EMP RN    + ++ T++ G
Sbjct: 146 YWHVESS---GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN----LASWGTIIGG 198

Query: 237 LCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK-GCLP 295
           L       EA  L  EM  DG    P TF V++      G   RA + +    LK G + 
Sbjct: 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG-SARAGQQLHCCVLKTGVVG 257

Query: 296 NEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNE--VTYGTIINGLVKLGRAVDGAR 353
           +      LI      G+++ A  + D       MP +  V + +++ G    G + +   
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFD------GMPEKTTVAWNSMLAGYALHGYSEEALC 311

Query: 354 VLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLC 413
           +   M +    ++++ +S +I    +    E A +    ++  G   + V  +AL+D   
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371

Query: 414 RVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEV 473
           + G+ ++A  + F+ +      N  ++++L+ G+   G+G KAVE+++ M       N V
Sbjct: 372 KWGRMEDARNV-FDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427

Query: 474 CY-SVL----IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALK 528
            + +VL      GL E G      +  +   +   KP  + Y+ MI  L   G ++EA  
Sbjct: 428 TFLAVLSACRYSGLSEQGW----EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483

Query: 529 L 529
           +
Sbjct: 484 M 484

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 75.9 bits (188), Expect = 2e-17
 Identities = 29/52 (55%), Positives = 38/52 (73%), Gaps = 2/52 (3%)

Query: 505 PDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK 556
           PDVV Y+++I G C  G VEEALKLFNEM       +P+V+TY+IL++ LCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR--GIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 85.3 bits (211), Expect = 4e-17
 Identities = 107/493 (21%), Positives = 190/493 (38%), Gaps = 58/493 (11%)

Query: 88  SLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE 147
           +LI  Y   GD  S  +V  RM R   +    S+  +   Y +     E + LF TM  E
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMR-E 281

Query: 148 FHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTF-------NLVIK 200
                 + +  SV++          A E        + M+       F       N +I+
Sbjct: 282 LSVDPDLMTITSVIS----------ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331

Query: 201 TVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFP 260
               LG    A ++F  M  +    D  ++  ++ G  K    D+A+     M+ D   P
Sbjct: 332 MYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387

Query: 261 TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLL 320
             +T   +++     G+L    KL +    KG +   V  N LI        +DKA+ + 
Sbjct: 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447

Query: 321 DRMVASKCMPNE--VTYGTIINGLVKLGRAVDG----ARVLMSMEERKFHVNEYIYSTLI 374
                   +P +  +++ +II GL    R  +      ++L++++     +   + +   
Sbjct: 448 ------HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501

Query: 375 SGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCA 434
            G    GK   A  L   +   G  PN     AL+D   R G+ + A         N   
Sbjct: 502 IGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYAWNQF-----NSHE 551

Query: 435 ANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMV 494
            +  +++ L+ G+   GKG  AVE++  M ++    +EV +  L+      G + +    
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611

Query: 495 WTQMLSR-GCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNA 553
           +  M  +    P++  Y+ ++  L  AG + EA    N+M        PD   +  LLNA
Sbjct: 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-----PITPDPAVWGALLNA 666

Query: 554 LCKQSNISHSIDL 566
            C+   I   ++L
Sbjct: 667 -CR---IHRHVEL 675

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 74.0 bits (183), Expect = 8e-17
 Identities = 24/50 (48%), Positives = 37/50 (74%)

Query: 225 PDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK 274
           PD+ TY TL+DG CK+ +++EA+ L +EM+  G  P   T+++LI+GLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 74.0 bits (183), Expect = 9e-17
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 295 PNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVK 344
           P+ VTYNTLI G C KG +++A+ L + M      PN  TY  +I+GL K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 81.1 bits (200), Expect = 8e-16
 Identities = 76/364 (20%), Positives = 151/364 (41%), Gaps = 22/364 (6%)

Query: 229 TYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPV-TFNVLINGLCKNGELGRAAKLVDN 287
           + C+ ++ L    R  EA+ L + ++    F  P  T++ L+        +     +  +
Sbjct: 89  SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWH 148

Query: 288 MFLKGCLPNEVTYN--TLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKL 345
           +   G  P++   N   L+H  C  G L  A  L D M       N  ++GTII GLV  
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKC--GMLIDARRLFDEMPER----NLASWGTIIGGLVDA 202

Query: 346 GRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVY 405
           G   +   +   M E         +  ++      G A    +L   +++ G   +T V 
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262

Query: 406 SALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAK 465
            ALID   + G  ++A  +   M      A    ++S++ G+   G   +A+ ++ +M  
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMPEKTTVA----WNSMLAGYALHGYSEEALCLYYEMRD 318

Query: 466 NNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE 525
           +    ++  +S++I        L  A+     ++  G   D+VA ++++      G +E+
Sbjct: 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378

Query: 526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF 585
           A  +F+ M    P+   ++ ++N L+         + ++++   M+  G  P+ VT   F
Sbjct: 379 ARNVFDRM----PRK--NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT---F 429

Query: 586 LTAL 589
           L  L
Sbjct: 430 LAVL 433

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 71.3 bits (176), Expect = 8e-16
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query: 260 PTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLC 308
           P  VT+N LI+G CK G++  A KL + M  +G  PN  TY+ LI GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.5 bits (174), Expect = 1e-15
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCR 414
           +   Y+TLI G  K+GK E+A+KL+ +M ++G KPN   YS LIDGLC+
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.5 bits (174), Expect = 2e-15
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 471 NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN 519
           + V Y+ LI G C+ GK+ EA  ++ +M  RG KP+V  YS +I GLC 
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 68.6 bits (169), Expect = 6e-15
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 190 PNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK 239
           P+ +T+N +I   C+ G V+ A++LF EM  R  +P++YTY  L+DGLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.0 bits (165), Expect = 2e-14
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGF 447
           P+ V Y+ LIDG C+ GK +EA ++  EM   G   N +TYS L+ G 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 63.9 bits (157), Expect = 2e-13
 Identities = 21/34 (61%), Positives = 24/34 (70%)

Query: 291 KGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMV 324
           KG  P+ VTYNTLI GLC  G +D+AV LLD M 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 71.0 bits (174), Expect = 1e-12
 Identities = 97/467 (20%), Positives = 180/467 (38%), Gaps = 102/467 (21%)

Query: 191 NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTY------CTLMDGLCKENRLD 244
           +  ++N+++    + G  D A+ L+  M      PD+YT+      C  +  L +   + 
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210

Query: 245 EAVLLLD-EMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTL 303
             V+    E+ VD         N LI    K G++  A  + D M  + C    +++N +
Sbjct: 211 AHVVRFGFELDVD-------VVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAM 259

Query: 304 IHGLCLKGNLDKAVSLLDRM--------------VASKC-MPNEVTYGTIINGL-VKLGR 347
           I G    G   + + L   M              V S C +  +   G  ++G  VK G 
Sbjct: 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319

Query: 348 AVD------------------GARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKL 389
           AVD                   A  + S  E K  V+   ++ +ISG  K G  + A++ 
Sbjct: 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS---WTAMISGYEKNGLPDKALET 376

Query: 390 WKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFE 449
           +  M +    P+ +  ++++     +G  D   ++       G  +     ++L++ + +
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436

Query: 450 SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVA 509
                KA+E++ ++ + +     + ++ +I GL  + +  EA + + QML    KP+ V 
Sbjct: 437 CKCIDKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVT 491

Query: 510 YSSM---------------IHG------------LCNA--------GSVEEALKLFNEML 534
             +                IH             L NA        G +  A   FN   
Sbjct: 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN--- 548

Query: 535 CLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT 581
                 + DV ++NILL         S +++L N M++ G +PD VT
Sbjct: 549 ----SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 69.5 bits (170), Expect = 3e-12
 Identities = 61/287 (21%), Positives = 123/287 (42%), Gaps = 22/287 (7%)

Query: 126 KAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKH 185
           KA   A  V+ A  ++  M+ E++ K T + +   +N   Q+G +  AL  Y+   + K 
Sbjct: 587 KACANAGQVDRAKEVYQ-MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD---DMKK 642

Query: 186 MNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDE 245
             + P+ + F+ ++      G +D A ++ ++   +  +    +Y +LM          +
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702

Query: 246 AVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIH 305
           A+ L ++++     PT  T N LI  LC+  +L +A +++  M   G  PN +TY+ L+ 
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762

Query: 306 GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVK--LGRAVDGARVLMSMEERKF 363
               K + D  + LL +       PN V    I  GL      +A      ++S +  + 
Sbjct: 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLRRFEKACALGEPVVSFDSGRP 821

Query: 364 HV-NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALI 409
            + N++                 A+ ++++ +  G  P   V S ++
Sbjct: 822 QIENKWTSW--------------ALMVYRETISAGTLPTMEVLSQVL 854

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 60.1 bits (147), Expect = 7e-12
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 542 PDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL 589
           PDV TYN L++  CK+  +  ++ L N M  RG  P++ T +I +  L
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 58.5 bits (143), Expect = 2e-11
 Identities = 19/33 (57%), Positives = 27/33 (81%)

Query: 501 RGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEM 533
           +G KPDVV Y+++I GLC AG V+EA++L +EM
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 57.7 bits (141), Expect = 4e-11
 Identities = 20/34 (58%), Positives = 27/34 (79%)

Query: 221 RNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQ 254
           +  +PD+ TY TL+DGLC+  R+DEAV LLDEM+
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 65.7 bits (160), Expect = 5e-11
 Identities = 79/346 (22%), Positives = 138/346 (39%), Gaps = 78/346 (22%)

Query: 128 YGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMN 187
           Y K   +E+A  +F  M      ++T  ++NS+L      G    AL  Y  + ++    
Sbjct: 269 YSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG--- 320

Query: 188 ILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAV 247
           +  +  TF+++I+   RL L+++A Q    +       DI     L+D   K  R+++A 
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380

Query: 248 LLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGL 307
            + D M                                          N +++N LI G 
Sbjct: 381 NVFDRMPRK---------------------------------------NLISWNALIAGY 401

Query: 308 CLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEE------R 361
              G   KAV + +RM+A    PN VT+  +++     G +  G  +  SM E      R
Sbjct: 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461

Query: 362 KFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDE- 420
             H     Y+ +I  L +EG  ++A  + ++      KP   +++AL+   CR+ K  E 
Sbjct: 462 AMH-----YACMIELLGREGLLDEAYAMIRR---APFKPTVNMWAALLTA-CRIHKNLEL 512

Query: 421 ---AEEILFEM----INNGCAANAFTYSSLMKGFFESGKGHKAVEI 459
              A E L+ M    +NN        Y  L+  +  SG+  +A ++
Sbjct: 513 GRLAAEKLYGMGPEKLNN--------YVVLLNLYNSSGRQAEAAKV 550

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 57.8 bits (141), Expect = 5e-11
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 436 NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLC 483
           +  TY++L+ G+ + GK  +A++++ +M K     N   YS+LI GLC
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 61.8 bits (150), Expect = 7e-10
 Identities = 75/362 (20%), Positives = 143/362 (39%), Gaps = 57/362 (15%)

Query: 266 NVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRM-- 323
           N  +  LC +G+L +A KL+++M       +E  Y  L   LC      +AV    R+  
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LC---EWKRAVEEGSRVCS 110

Query: 324 VASKCMPN-EVTYG-TIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEG 381
            A    P+  V  G  +++  V+ G  V    V   M ER    + + ++ L+ G  K G
Sbjct: 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAG 166

Query: 382 KAEDAMKLWKQMMEKGCKPNTV-----------------------------------VYS 406
             ++A+ L+ +M+  G +P+                                     V +
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226

Query: 407 ALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKN 466
           ALI    + G    A  +   M    C     ++++++ G+FE+G+  + +E++  M + 
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMREL 282

Query: 467 NCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEA 526
           +   + +  + +I      G  R  R +   ++  G   DV   +S+I    + GS  EA
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342

Query: 527 LKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFL 586
            K+F+ M         D  ++  +++   K      +++    M      PD +T    L
Sbjct: 343 EKVFSRMET------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396

Query: 587 TA 588
           +A
Sbjct: 397 SA 398

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 53.5 bits (130), Expect = 1e-09
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 256 DGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM 288
            G  P  VT+N LI+GLC+ G +  A +L+D M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 53.1 bits (129), Expect = 2e-09
 Identities = 21/33 (63%), Positives = 25/33 (75%)

Query: 396 KGCKPNTVVYSALIDGLCRVGKPDEAEEILFEM 428
           KG KP+ V Y+ LIDGLCR G+ DEA E+L EM
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 48.2 bits (116), Expect = 8e-08
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 368 YIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNT 402
             Y+TLI GL K G+ E+A++L+K+M E+G +P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 46.3 bits (111), Expect = 4e-07
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV 507
           V Y+ LI GLC+ G++ EA  ++ +M  RG +PDV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 45.9 bits (110), Expect = 5e-07
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 298 VTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNE 332
           VTYNTLI GLC  G +++A+ L   M      P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 45.0 bits (108), Expect = 1e-06
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 186 MNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP 219
             + P+ +T+N +I  +CR G VD A++L  EM 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 228 YTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT 261
            TY TL+DGLCK  R++EA+ L  EM+  G  P 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 403 VVYSALIDGLCRVGKPDEAEEILFEMINNGC 433
           V Y++LI G C+ GK +EA E+  EM   G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 403 VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANA 437
           V Y+ LIDGLC+ G+ +EA E+  EM   G   + 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 43.2 bits (103), Expect = 5e-06
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 298 VTYNTLIHGLCLKGNLDKAVSLLDRMVASKC 328
           VTYN+LI G C  G L++A+ L   M     
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.8 bits (102), Expect = 7e-06
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 545 FTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD 578
            TYN L++ LCK   +  +++L   M +RG +PD
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 16/27 (59%), Positives = 20/27 (74%)

Query: 508 VAYSSMIHGLCNAGSVEEALKLFNEML 534
           V Y+S+I G C AG +EEAL+LF EM 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMK 27

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.4 bits (101), Expect = 9e-06
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 368 YIYSTLISGLFKEGKAEDAMKLWKQMMEKGC 398
             Y++LISG  K GK E+A++L+K+M EKG 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 228 YTYCTLMDGLCKENRLDEAVLLLDEMQVDGC 258
            TY +L+ G CK  +L+EA+ L  EM+  G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 40.8 bits (97), Expect = 3e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 466 NNCVYNEVCYSVLIHGLCEDGKLREARMVWTQM 498
                + V Y+ LI GLC  G++ EA  +  +M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 508 VAYSSMIHGLCNAGSVEEALKLFNEML 534
           V Y+++I GLC AG VEEAL+LF EM 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMK 27

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 263 VTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNE 297
           VT+N LI+GLCK G +  A +L   M  +G  P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 39.6 bits (94), Expect = 7e-05
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 541 QPDVFTYNILLNALCKQSNISHSIDLLNSM 570
           +PDV TYN L++ LC+   +  +++LL+ M
Sbjct: 4   KPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 361 RKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQM 393
           +    +   Y+TLI GL + G+ ++A++L  +M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.7 bits (101), Expect = 2e-04
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 6/220 (2%)

Query: 352 ARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN-TVVYSALID 410
             +  ++E         +   L   L K G+ E+A++L ++ +E    PN       L  
Sbjct: 44  ELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGL 103

Query: 411 GLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVY 470
            L  +GK +EA E+L + +      +       +   +E G   +A+E+++   + +   
Sbjct: 104 LLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPEL 163

Query: 471 NE--VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALK 528
           NE       L   L   G+  EA  +  + L      D  A  ++       G  EEAL+
Sbjct: 164 NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223

Query: 529 LFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLN 568
            + + L        +      L   L +      +++ L 
Sbjct: 224 YYEKAL---ELDPDNAEALYNLALLLLELGRYEEALEALE 260

Length = 291

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 194 TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDI 227
           T+N +I  +C+ G V+ A++LF+EM  R  EPD+
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGC 503
           V Y+ LI G C+ GKL EA  ++ +M  +G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 263 VTFNVLINGLCKNGELGRAAKLVDNMFLKGC 293
           VT+N LI+G CK G+L  A +L   M  KG 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 9/35 (25%), Positives = 22/35 (62%)

Query: 438 FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNE 472
            TY++L+ G  ++G+  +A+E++K+M +     + 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 545 FTYNILLNALCKQSNISHSIDLLNSMMDRGC 575
            TYN L++  CK   +  +++L   M ++G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 11/31 (35%), Positives = 22/31 (70%)

Query: 438 FTYSSLMKGFFESGKGHKAVEIWKDMAKNNC 468
            TY+SL+ G+ ++GK  +A+E++K+M +   
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 297 EVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMP 330
             TYN L+  L   G+ D A+++L+ M AS   P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 35.4 bits (83), Expect = 0.003
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 328 CMPNEVTYGTIINGLVKLGRAVDGARVLMS-ME 359
             P+ VTY T+I+GL + GR VD A  L+  ME
Sbjct: 3   LKPDVVTYNTLIDGLCRAGR-VDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 35.4 bits (83), Expect = 0.003
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 431 NGCAANAFTYSSLMKGFFESGKGHKAVEIWKDM 463
            G   +  TY++L+ G   +G+  +AVE+  +M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 367 EYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKP 400
              Y+ L+  L K G  + A+ + ++M   G KP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	664
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.94
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.92
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.92
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.88
PRK14574	822	hmsH outer membrane protein; Provisional	99.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.88
PRK14574	822	hmsH outer membrane protein; Provisional	99.87
KOG2003	840	consensus TPR repeat-containing protein [General f	99.86
KOG2003	840	consensus TPR repeat-containing protein [General f	99.83
KOG2076	895	consensus RNA polymerase III transcription factor	99.83
KOG2076	895	consensus RNA polymerase III transcription factor	99.83
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.82
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.82
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.81
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.81
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.79
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.79
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.72
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.72
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.7
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.68
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.68
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.68
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.67
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.66
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.65
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.65
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.64
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.64
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.62
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.6
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.59
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.58
KOG1126	638	consensus DNA-binding cell division cycle control	99.57
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.57
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.57
KOG1126	638	consensus DNA-binding cell division cycle control	99.57
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.55
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.54
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.53
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.47
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.47
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.46
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.45
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.45
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.43
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.4
KOG1129	478	consensus TPR repeat-containing protein [General f	99.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.39
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.38
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.38
PRK12370	553	invasion protein regulator; Provisional	99.38
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.37
PRK12370	553	invasion protein regulator; Provisional	99.37
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.35
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.35
KOG1129	478	consensus TPR repeat-containing protein [General f	99.33
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.27
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.26
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.26
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.25
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.23
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.22
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.21
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.2
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.2
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.19
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.18
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.18
PF13041	50	PPR_2: PPR repeat family	99.18
PRK11189	296	lipoprotein NlpI; Provisional	99.18
PF13041	50	PPR_2: PPR repeat family	99.17
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.13
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.12
PRK11189	296	lipoprotein NlpI; Provisional	99.12
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.1
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.09
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.09
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.06
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.01
PRK04841	903	transcriptional regulator MalT; Provisional	98.97
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.96
KOG1125	579	consensus TPR repeat-containing protein [General f	98.95
KOG1125	579	consensus TPR repeat-containing protein [General f	98.94
PRK04841	903	transcriptional regulator MalT; Provisional	98.93
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.92
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.87
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.85
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.81
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.78
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.76
PLN02789	320	farnesyltranstransferase	98.73
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.72
PLN02789	320	farnesyltranstransferase	98.69
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.69
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.62
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.61
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.61
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.6
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.6
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.58
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.57
PRK15359	144	type III secretion system chaperone protein SscB;	98.55
PF12854	34	PPR_1: PPR repeat	98.54
PF12854	34	PPR_1: PPR repeat	98.52
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.5
PRK15359	144	type III secretion system chaperone protein SscB;	98.48
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.48
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.43
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.43
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.4
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.39
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.26
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.2
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.1
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.07
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.02
KOG0553	304	consensus TPR repeat-containing protein [General f	98.01
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.01
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.97
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.94
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.89
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.86
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.86
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.86
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.84
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.84
PF12688	120	TPR_5: Tetratrico peptide repeat	97.84
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.82
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.81
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.81
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.79
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.77
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.77
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.77
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.76
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.75
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.74
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.74
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.72
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.7
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.69
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.68
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.67
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.65
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.65
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.64
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.64
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.62
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.62
KOG0553	304	consensus TPR repeat-containing protein [General f	97.61
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.6
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.58
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.58
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.58
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.56
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.55
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.52
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.52
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.52
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.49
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.48
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.47
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.46
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.45
PF12688	120	TPR_5: Tetratrico peptide repeat	97.45
PRK10803	263	tol-pal system protein YbgF; Provisional	97.42
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.41
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.39
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.37
PRK10803	263	tol-pal system protein YbgF; Provisional	97.31
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.28
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.2
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.18
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.18
KOG1258	577	consensus mRNA processing protein [RNA processing	97.15
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.13
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.12
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.11
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.06
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.05
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.05
PF13371	73	TPR_9: Tetratricopeptide repeat	97.04
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.02
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.99
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.96
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.95
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.94
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.93
KOG1258	577	consensus mRNA processing protein [RNA processing	96.87
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.76
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.74
PF13371	73	TPR_9: Tetratricopeptide repeat	96.71
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.7
PRK11906	458	transcriptional regulator; Provisional	96.69
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.68
PF13512	142	TPR_18: Tetratricopeptide repeat	96.66
KOG4555	175	consensus TPR repeat-containing protein [Function	96.65
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.59
PRK15331	165	chaperone protein SicA; Provisional	96.58
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.54
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.52
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.45
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.43
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.4
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.35
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.35
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.35
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.3
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.29
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.26
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.22
PRK15331	165	chaperone protein SicA; Provisional	96.16
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.11
KOG4555	175	consensus TPR repeat-containing protein [Function	96.1
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.04
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	95.93
PF13512	142	TPR_18: Tetratricopeptide repeat	95.86
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.85
KOG1585	308	consensus Protein required for fusion of vesicles	95.84
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.81
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.81
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.73
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.57
PRK11906	458	transcriptional regulator; Provisional	95.54
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.47
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.44
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.42
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.42
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.37
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.33
PF13428	44	TPR_14: Tetratricopeptide repeat	95.13
PF13428	44	TPR_14: Tetratricopeptide repeat	95.04
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.95
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.91
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.85
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.69
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.51
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.5
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.45
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.2
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.17
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.07
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.87
KOG3941	406	consensus Intermediate in Toll signal transduction	93.61
KOG1585	308	consensus Protein required for fusion of vesicles	93.28
KOG3941	406	consensus Intermediate in Toll signal transduction	93.21
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.11
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	93.09
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.02
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	93.02
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	92.97
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	92.79
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.73
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.64
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.63
PF13431	34	TPR_17: Tetratricopeptide repeat	92.53
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.52
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.08
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.9
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.85
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.69
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.65
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.63
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.27
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.67
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.61
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.34
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.33
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.98
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.57
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.55
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	89.5
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	89.47
PF13431	34	TPR_17: Tetratricopeptide repeat	89.44
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	89.4
KOG4234	271	consensus TPR repeat-containing protein [General f	89.4
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	88.8
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.66
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	88.64
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.36
KOG2471	696	consensus TPR repeat-containing protein [General f	88.31
COG1747	711	Uncharacterized N-terminal domain of the transcrip	88.19
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.06
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	88.04
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	88.03
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.97
KOG4570	418	consensus Uncharacterized conserved protein [Funct	87.91
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.85
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.62
KOG4648	536	consensus Uncharacterized conserved protein, conta	87.59
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	87.41
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	87.37
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.29
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.75
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	86.16
KOG4570	418	consensus Uncharacterized conserved protein [Funct	85.43
KOG4234	271	consensus TPR repeat-containing protein [General f	85.36
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	84.66
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	84.62
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	84.25
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.2
COG3947	361	Response regulator containing CheY-like receiver a	83.97
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	83.87
PF13929	292	mRNA_stabil: mRNA stabilisation	83.66
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	83.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	82.68
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	82.3
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	82.29
KOG4648	536	consensus Uncharacterized conserved protein, conta	82.18
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.17
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	82.02
PRK09687	280	putative lyase; Provisional	81.8
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	81.75
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.74
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	81.0
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	80.26
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.24
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.1
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	80.09

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.1e-70  Score=602.34  Aligned_cols=551  Identities=19%  Similarity=0.257  Sum_probs=443.7

Q ss_pred             CCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006010           60 KSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIR  139 (664)
Q Consensus        60 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  139 (664)
                      ......|..+|+.+.. .+.+|+..+|..++..|.+.+.++.+.+++..+.+.+..++...++.++..|++.|+.+.|.+
T Consensus        64 ~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~  142 (857)
T PLN03077         64 HGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY  142 (857)
T ss_pred             CCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHH
Confidence            4567788899998865 456788889999999999999999999999999988888888889999999999999999999


Q ss_pred             HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010          140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  219 (664)
                      +|+.|     .+||+.+|+.++.+|++.|++++|+.+|++|..   .|+.||..+|+.++.+++..++++.+.+++..|.
T Consensus       143 ~f~~m-----~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~---~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~  214 (857)
T PLN03077        143 VFGKM-----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW---AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV  214 (857)
T ss_pred             HHhcC-----CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence            99998     357889999999999999999999999999988   6888988888888888877777777888888777


Q ss_pred             cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 006010          220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVT  299 (664)
Q Consensus       220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~  299 (664)
                      +.|+.||..+|+.|+.+|++.|++++|.++|++|..    ||.++||.+|.+|++.|++++|+++|++|...|+.||..+
T Consensus       215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t  290 (857)
T PLN03077        215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT  290 (857)
T ss_pred             HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence            777777777888888888888888888888877763    5777788888888888888888888888877777777778


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010          300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK  379 (664)
Q Consensus       300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (664)
                      |+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|..    ||..+|+.++.+|++
T Consensus       291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~  366 (857)
T PLN03077        291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEK  366 (857)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHh
Confidence            8888877777777777777777777777777777777777777777777777777777753    466777777777777


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI  459 (664)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  459 (664)
                      .|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+++|++.|++++|.++
T Consensus       367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v  446 (857)
T PLN03077        367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV  446 (857)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH---------------------------
Q 006010          460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS---------------------------  512 (664)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---------------------------  512 (664)
                      |+.|.+    +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.                           
T Consensus       447 f~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~  521 (857)
T PLN03077        447 FHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG  521 (857)
T ss_pred             HHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence            777653    4556666666666666666666666666654 35566655554                           


Q ss_pred             --------HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006010          513 --------MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNI  584 (664)
Q Consensus       513 --------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  584 (664)
                              ++.+|+++|++++|.++|+++       .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus       522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~  594 (857)
T PLN03077        522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS  594 (857)
T ss_pred             ccceechHHHHHHHHcCCHHHHHHHHHhc-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence                    455666666666666666554       46889999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH-HcCCCCChHHHHHHHHHhcccchHHHHHHHHHh
Q 006010          585 FLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML-QKFLSPQTSTWERVVQELCRPKRIQAAINKCWS  660 (664)
Q Consensus       585 ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  660 (664)
                      ++.+                     |.+.|++++|.++|+.|. +.|+.|+..+|..++++|++.|++++|.+++.+
T Consensus       595 ll~a---------------------~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        595 LLCA---------------------CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             HHHH---------------------HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            9999                     788888888888888887 448888888888888888888888888887665

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.8e-68  Score=571.23  Aligned_cols=540  Identities=18%  Similarity=0.228  Sum_probs=503.6

Q ss_pred             CChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHH
Q 006010           61 SEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRV-VLEKSFIFIFKAYGKAHLVEEAIR  139 (664)
Q Consensus        61 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~  139 (664)
                      .+...++...++....   .++...|..++..+++.|++++|.++|+.|.+.+.. ++...+..++..|.+.|..++|++
T Consensus       351 ~~~~~~~~~~~~~~~~---~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~  427 (1060)
T PLN03218        351 VEEENSLAAYNGGVSG---KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR  427 (1060)
T ss_pred             chhhhhHHHhccccCC---CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHH
Confidence            4445566666666554   356778999999999999999999999999998854 455567788999999999999999


Q ss_pred             HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010          140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  219 (664)
                      +|..|.     .|+..+|+.++.+|++.|++++|.++|+.|.+   .|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus       428 lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~---~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~  499 (1060)
T PLN03218        428 FAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQE---AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV  499 (1060)
T ss_pred             HHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            999883     49999999999999999999999999999999   8899999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCH
Q 006010          220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFL--KGCLPNE  297 (664)
Q Consensus       220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~g~~p~~  297 (664)
                      +.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||.
T Consensus       500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~  579 (1060)
T PLN03218        500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH  579 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999976  5789999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006010          298 VTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGL  377 (664)
Q Consensus       298 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  377 (664)
                      .+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus       580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~  659 (1060)
T PLN03218        580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA  659 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006010          378 FKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAV  457 (664)
Q Consensus       378 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  457 (664)
                      ++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.
T Consensus       660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl  739 (1060)
T PLN03218        660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL  739 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----c-------------
Q 006010          458 EIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----A-------------  520 (664)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------  520 (664)
                      ++|++|...|+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+    +             
T Consensus       740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g  819 (1060)
T PLN03218        740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG  819 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999876432    1             


Q ss_pred             ------CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhcc
Q 006010          521 ------GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLE  594 (664)
Q Consensus       521 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~  594 (664)
                            +..+.|..+|++|  .+.|..||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+.++.+      
T Consensus       820 ~~~~~n~w~~~Al~lf~eM--~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g------  891 (1060)
T PLN03218        820 RPQIENKWTSWALMVYRET--ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG------  891 (1060)
T ss_pred             ccccccchHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh------
Confidence                  1246799999999  77899999999999998888899999999999999888889999999999998      


Q ss_pred             CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChH
Q 006010          595 APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTS  636 (664)
Q Consensus       595 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  636 (664)
                                     +.+.  .++|..++++|.+.|+.|+..
T Consensus       892 ---------------~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        892 ---------------FGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             ---------------hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence                           5322  368999999999999999864

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.7e-68  Score=568.02  Aligned_cols=515  Identities=21%  Similarity=0.280  Sum_probs=484.6

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHH
Q 006010          115 VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLT  194 (664)
Q Consensus       115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  194 (664)
                      ..+...+..++..+.+.|++++|+++|+.|....-.+++...++.++..|.+.|..++|..+|+.|..       ||..+
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------pd~~T  439 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------PTLST  439 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------CCHHH
Confidence            44566788888999999999999999999965544567788889999999999999999999998853       89999


Q ss_pred             HHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006010          195 FNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK  274 (664)
Q Consensus       195 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  274 (664)
                      |+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++
T Consensus       440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k  519 (1060)
T PLN03218        440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR  519 (1060)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhcCChhHHH
Q 006010          275 NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVA--SKCMPNEVTYGTIINGLVKLGRAVDGA  352 (664)
Q Consensus       275 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~  352 (664)
                      .|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.
T Consensus       520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~  599 (1060)
T PLN03218        520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK  599 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999986  678999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006010          353 RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG  432 (664)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  432 (664)
                      ++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus       600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G  679 (1060)
T PLN03218        600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG  679 (1060)
T ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH
Q 006010          433 CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS  512 (664)
Q Consensus       433 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  512 (664)
                      +.|+..+|+.++.+|++.|++++|.++|+.|.+.++.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.
T Consensus       680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s  759 (1060)
T PLN03218        680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI  759 (1060)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH----c-------------------CChhHHHHHHHH
Q 006010          513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK----Q-------------------SNISHSIDLLNS  569 (664)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~  569 (664)
                      ++.+|++.|++++|.+++++|  .+.+..||..+|+.++..|.+    .                   +..++|..+|++
T Consensus       760 LL~a~~k~G~le~A~~l~~~M--~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e  837 (1060)
T PLN03218        760 LLVASERKDDADVGLDLLSQA--KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE  837 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence            999999999999999999999  677899999999999876432    1                   124679999999


Q ss_pred             HHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccc
Q 006010          570 MMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPK  649 (664)
Q Consensus       570 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  649 (664)
                      |.+.|+.||..||..++..                     +++.+..+.+..+++.|...+..|+..+|..+++++++. 
T Consensus       838 M~~~Gi~Pd~~T~~~vL~c---------------------l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~-  895 (1060)
T PLN03218        838 TISAGTLPTMEVLSQVLGC---------------------LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY-  895 (1060)
T ss_pred             HHHCCCCCCHHHHHHHHHH---------------------hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC-
Confidence            9999999999999999954                     788888999999999988778888999999999998543 


Q ss_pred             hHHHHHHHHHhh
Q 006010          650 RIQAAINKCWSN  661 (664)
Q Consensus       650 ~~~~A~~~~~~~  661 (664)
                       .++|+..+.+.
T Consensus       896 -~~~A~~l~~em  906 (1060)
T PLN03218        896 -DPRAFSLLEEA  906 (1060)
T ss_pred             -hHHHHHHHHHH
Confidence             36799888764

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.7e-68  Score=585.05  Aligned_cols=542  Identities=18%  Similarity=0.240  Sum_probs=298.4

Q ss_pred             CChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006010           61 SEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRL  140 (664)
Q Consensus        61 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  140 (664)
                      .+.+.|..+|+.+..     |+..+|+.++..|++.|++++|..+|++|...|..|+..+|..++.++...++++.+.++
T Consensus       135 g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~  209 (857)
T PLN03077        135 GELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV  209 (857)
T ss_pred             CChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence            445667777777753     567788888888888888888888888888777777766665555555555555555555


Q ss_pred             HHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhccc
Q 006010          141 FHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPV  220 (664)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  220 (664)
                      +..+. ..|..|++.+++.++.+|++.|++++|..+|+.|..       ||..+||.++.+|++.|++++|.++|++|..
T Consensus       210 ~~~~~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~  281 (857)
T PLN03077        210 HAHVV-RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-------RDCISWNAMISGYFENGECLEGLELFFTMRE  281 (857)
T ss_pred             HHHHH-HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-------CCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            44442 234445555555555555555555555555555432       3445555555555555555555555555555


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 006010          221 RNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTY  300 (664)
Q Consensus       221 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~  300 (664)
                      .|+.||..+|+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.    .||..+|
T Consensus       282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~  357 (857)
T PLN03077        282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSW  357 (857)
T ss_pred             cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeH
Confidence            555555555555555555555555555555555555555555555555555555555555555555543    2344555


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010          301 NTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKE  380 (664)
Q Consensus       301 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  380 (664)
                      +.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+++.++.+|++.
T Consensus       358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~  437 (857)
T PLN03077        358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC  437 (857)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006010          381 GKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIW  460 (664)
Q Consensus       381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  460 (664)
                      |++++|.++|++|.+    +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+.+.+.+++
T Consensus       438 g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~  512 (857)
T PLN03077        438 KCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH  512 (857)
T ss_pred             CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence            555555555555432    2444555555555555555555555555543 24555555555555555555555555555


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC
Q 006010          461 KDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS  540 (664)
Q Consensus       461 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  540 (664)
                      ..+.+.|..++..+++.++.+|++.|++++|.++|+.+     .||..+|+.++.+|++.|+.++|.++|++|  .+.+.
T Consensus       513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M--~~~g~  585 (857)
T PLN03077        513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRM--VESGV  585 (857)
T ss_pred             HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH--HHcCC
Confidence            55555555555555555555555555555555555444     345555555555555555555555555555  34455


Q ss_pred             CCCHhHHHHHHHHHHHcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchH
Q 006010          541 QPDVFTYNILLNALCKQSNISHSIDLLNSMM-DRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGG  619 (664)
Q Consensus       541 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  619 (664)
                      .||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|+.++..                     |++.|++++|
T Consensus       586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~---------------------l~r~G~~~eA  644 (857)
T PLN03077        586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL---------------------LGRAGKLTEA  644 (857)
T ss_pred             CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH---------------------HHhCCCHHHH
Confidence            5555555555555555555555555555555 34555555555555555                     4555555555


Q ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHH
Q 006010          620 FKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAI  655 (664)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  655 (664)
                      .+++++|.   +.||..+|..|+.+|..+|+.+.|.
T Consensus       645 ~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e  677 (857)
T PLN03077        645 YNFINKMP---ITPDPAVWGALLNACRIHRHVELGE  677 (857)
T ss_pred             HHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHH
Confidence            55555442   4455555555555554444444443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.5e-61  Score=517.50  Aligned_cols=476  Identities=18%  Similarity=0.241  Sum_probs=450.7

Q ss_pred             CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 006010           81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREK-RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNS  159 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  159 (664)
                      .+...|+.++..+.+.|++++|..+|+.|...+ ..++..+|+.++.++.+.++++.|.+++..+. ..|..|+..+|+.
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~  163 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNR  163 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHH
Confidence            355689999999999999999999999999764 56789999999999999999999999999985 5678899999999


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010          160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK  239 (664)
Q Consensus       160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  239 (664)
                      ++.+|++.|++++|.++|++|.+       ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~-------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~  236 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPE-------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG  236 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCC-------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence            99999999999999999999964       79999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSL  319 (664)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~  319 (664)
                      .|..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|.    .+|..+|+.++.+|++.|++++|.++
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~l  312 (697)
T PLN03081        237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCL  312 (697)
T ss_pred             CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999995    45899999999999999999999999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006010          320 LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK  399 (664)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  399 (664)
                      |++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.+|..+++.++.+|++.|++++|.++|++|.+    
T Consensus       313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----  388 (697)
T PLN03081        313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----  388 (697)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999964    


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 006010          400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAK-NNCVYNEVCYSVL  478 (664)
Q Consensus       400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l  478 (664)
                      ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.+
T Consensus       389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l  468 (697)
T PLN03081        389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM  468 (697)
T ss_pred             CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence            689999999999999999999999999999999999999999999999999999999999999986 5889999999999


Q ss_pred             HHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010          479 IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS  558 (664)
Q Consensus       479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  558 (664)
                      +.+|++.|++++|.+++++|   ++.|+..+|+.++.+|...|+++.|..++++++...+.   +..+|..++..|++.|
T Consensus       469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~---~~~~y~~L~~~y~~~G  542 (697)
T PLN03081        469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE---KLNNYVVLLNLYNSSG  542 (697)
T ss_pred             HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC---CCcchHHHHHHHHhCC
Confidence            99999999999999999876   46899999999999999999999999999999543322   5678999999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCCC
Q 006010          559 NISHSIDLLNSMMDRGCDPD  578 (664)
Q Consensus       559 ~~~~A~~~~~~~~~~~~~p~  578 (664)
                      ++++|.+++++|.+.|+...
T Consensus       543 ~~~~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        543 RQAEAAKVVETLKRKGLSMH  562 (697)
T ss_pred             CHHHHHHHHHHHHHcCCccC
Confidence            99999999999999987643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.6e-61  Score=514.54  Aligned_cols=476  Identities=20%  Similarity=0.307  Sum_probs=452.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHH
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFN  196 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  196 (664)
                      +...|+.++..+.+.|++++|+++|+.|....+..|+..+|+.++.++.+.++++.|.+++..+.+   .|+.||..+|+
T Consensus        86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~---~g~~~~~~~~n  162 (697)
T PLN03081         86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES---SGFEPDQYMMN  162 (697)
T ss_pred             CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCcchHHHH
Confidence            344789999999999999999999999976656789999999999999999999999999999998   88999999999


Q ss_pred             HHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006010          197 LVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNG  276 (664)
Q Consensus       197 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  276 (664)
                      .++.+|++.|+++.|.++|++|.    .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~  238 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG  238 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence            99999999999999999999997    47899999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 006010          277 ELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLM  356 (664)
Q Consensus       277 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  356 (664)
                      +.+.+.+++..+.+.|..||..+|+.++.+|++.|++++|.++|++|.    .+|..+|+.++.+|++.|+.++|.++|+
T Consensus       239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~  314 (697)
T PLN03081        239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY  314 (697)
T ss_pred             cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999996    4689999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006010          357 SMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAAN  436 (664)
Q Consensus       357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  436 (664)
                      +|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.    .+|
T Consensus       315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d  390 (697)
T PLN03081        315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN  390 (697)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999996    468


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCCcCHHhHHHHHH
Q 006010          437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLS-RGCKPDVVAYSSMIH  515 (664)
Q Consensus       437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~  515 (664)
                      ..+|+.|+.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~  470 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE  470 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999986 589999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhcc
Q 006010          516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLE  594 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~  594 (664)
                      +|++.|++++|.++++++     +..|+..+|+.++.+|...|+++.|..+++++.+  +.|+ ..+|..++..      
T Consensus       471 ~l~r~G~~~eA~~~~~~~-----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~------  537 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRA-----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNL------  537 (697)
T ss_pred             HHHhcCCHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHH------
Confidence            999999999999999887     4789999999999999999999999999999975  6675 5678888887      


Q ss_pred             CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCCh
Q 006010          595 APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQT  635 (664)
Q Consensus       595 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  635 (664)
                                     |++.|+|++|.++++.|.++|+.+.+
T Consensus       538 ---------------y~~~G~~~~A~~v~~~m~~~g~~k~~  563 (697)
T PLN03081        538 ---------------YNSSGRQAEAAKVVETLKRKGLSMHP  563 (697)
T ss_pred             ---------------HHhCCCHHHHHHHHHHHHHcCCccCC
Confidence                           99999999999999999999876443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=4.5e-35  Score=330.47  Aligned_cols=579  Identities=12%  Similarity=0.042  Sum_probs=484.4

Q ss_pred             CCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006010           60 KSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIR  139 (664)
Q Consensus        60 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  139 (664)
                      ..+.+.|...|..+....  +.++..+..+...+...|+++.|...+..+.... +.+...+..++..+...|++++|.+
T Consensus       308 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  384 (899)
T TIGR02917       308 LGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE  384 (899)
T ss_pred             cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            567788999998876543  2456677888899999999999999999998766 4467788899999999999999999


Q ss_pred             HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010          140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  219 (664)
                      .|+++.+.  .+.+...+..+...+...|++++|.+.++.+.+..+    ........++..+.+.|++++|.++++.+.
T Consensus       385 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  458 (899)
T TIGR02917       385 YLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP----ELGRADLLLILSYLRSGQFDKALAAAKKLE  458 (899)
T ss_pred             HHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC----cchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            99998664  345677888999999999999999999999987221    123455667888999999999999999988


Q ss_pred             cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 006010          220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVT  299 (664)
Q Consensus       220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~  299 (664)
                      ... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++...+. .+..+
T Consensus       459 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~  535 (899)
T TIGR02917       459 KKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRA  535 (899)
T ss_pred             HhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHH
Confidence            764 6678889999999999999999999999988754 34566788889999999999999999999987743 36788


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010          300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK  379 (664)
Q Consensus       300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (664)
                      +..+...+...|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+... .+...|..++.++.+
T Consensus       536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~  613 (899)
T TIGR02917       536 ILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLA  613 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            8899999999999999999999998764 45667788899999999999999999999987643 377889999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI  459 (664)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  459 (664)
                      .|++++|+..|+++.+... .+...+..+..++...|++++|...++++.+.. +.+...+..++..+...|++++|.++
T Consensus       614 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  691 (899)
T TIGR02917       614 AGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKI  691 (899)
T ss_pred             cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999987643 366778889999999999999999999998874 66788899999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCC
Q 006010          460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK  539 (664)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  539 (664)
                      ++.+.... +.+...+..+...+...|++++|.+.++.+...  .|+..++..++.++.+.|++++|...+++++...+.
T Consensus       692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  768 (899)
T TIGR02917       692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN  768 (899)
T ss_pred             HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            99998876 567778888999999999999999999999886  455577888999999999999999999999754443


Q ss_pred             CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhcc------------CCCCchhhhHHHH
Q 006010          540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLE------------APQDGTDFLNELA  607 (664)
Q Consensus       540 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~------------~~~~~~~~~~~l~  607 (664)
                         +...+..+...|...|++++|...|+++.+.. +.+...+..+...+...++            .......++..++
T Consensus       769 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  844 (899)
T TIGR02917       769 ---DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLG  844 (899)
T ss_pred             ---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence               67788889999999999999999999999742 3344555555554444333            1112233456788


Q ss_pred             HHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          608 IRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      .++...|++++|.++++++.+.+ +.++.++..++.++++.|+.++|.+.+.+.+
T Consensus       845 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       845 WLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            99999999999999999999974 4489999999999999999999999988765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=6.6e-34  Score=321.00  Aligned_cols=577  Identities=12%  Similarity=0.052  Sum_probs=482.0

Q ss_pred             CCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006010           60 KSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIR  139 (664)
Q Consensus        60 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  139 (664)
                      ..+.+.|...|+.+.+..+  ....++..+...+...|+++.|...+..+.+..+ .+...+..++..+...|++++|+.
T Consensus       274 ~~~~~~A~~~~~~~l~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~  350 (899)
T TIGR02917       274 KKNYEDARETLQDALKSAP--EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIA  350 (899)
T ss_pred             hcCHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHH
Confidence            4678899999988766432  2345666777889999999999999999998764 356678889999999999999999


Q ss_pred             HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010          140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  219 (664)
                      .+..+...  .+.+...+..++..+.+.|++++|.++|+++.+..    +.+...+..+...+...|++++|.+.|+.+.
T Consensus       351 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  424 (899)
T TIGR02917       351 TLSPALGL--DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD----PENAAARTQLGISKLSQGDPSEAIADLETAA  424 (899)
T ss_pred             HHHHHHhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            99998764  45678889999999999999999999999998721    2355677888889999999999999999998


Q ss_pred             cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 006010          220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVT  299 (664)
Q Consensus       220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~  299 (664)
                      +.+ +........++..+.+.|++++|..+++.+... .+.+..++..+...+...|++++|.+.|+++.... +.+...
T Consensus       425 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~  501 (899)
T TIGR02917       425 QLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPA  501 (899)
T ss_pred             hhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHH
Confidence            765 334556777888999999999999999999875 35577899999999999999999999999998764 335667


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010          300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK  379 (664)
Q Consensus       300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (664)
                      +..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|..++.++...+.. +...+..++..+.+
T Consensus       502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~  579 (899)
T TIGR02917       502 AANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLG  579 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHH
Confidence            8888999999999999999999998864 457788899999999999999999999999887543 66778889999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI  459 (664)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  459 (664)
                      .|++++|..+++.+.+.. +.+...|..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...
T Consensus       580 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  657 (899)
T TIGR02917       580 KGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITS  657 (899)
T ss_pred             CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999998764 4477889999999999999999999999999875 56778899999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCC
Q 006010          460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK  539 (664)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  539 (664)
                      ++++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +++...+..++..+...|++++|...|++++...  
T Consensus       658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--  733 (899)
T TIGR02917       658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--  733 (899)
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence            99999866 5678899999999999999999999999999875 4567788889999999999999999999996533  


Q ss_pred             CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhcc-------------CCCCchhhhHH
Q 006010          540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLE-------------APQDGTDFLNE  605 (664)
Q Consensus       540 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~-------------~~~~~~~~~~~  605 (664)
                        |+..++..++.++.+.|++++|.+.++++.+.  .|+ ...+..+...+...++             ........+..
T Consensus       734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  809 (899)
T TIGR02917       734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN  809 (899)
T ss_pred             --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence              34467778899999999999999999999974  444 4444444444332221             11122344567


Q ss_pred             HHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          606 LAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       606 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      +++.+...|+ .+|..+++++.+. .+.++..+..++..+...|++++|++.+++.+
T Consensus       810 l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  864 (899)
T TIGR02917       810 LAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAV  864 (899)
T ss_pred             HHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8889999999 8899999999875 34466888889999999999999999988765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.6e-26  Score=259.98  Aligned_cols=564  Identities=10%  Similarity=0.033  Sum_probs=361.5

Q ss_pred             cCCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHH----------------HH
Q 006010           59 AKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKS----------------FI  122 (664)
Q Consensus        59 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~  122 (664)
                      ...+++.|.+.+.++....  +.++.++...+..+.+.|+.++|.+.++++.+..+.. ...                ..
T Consensus        40 ~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~-~~~~~~~~~~~~~~~~~~~~l  116 (1157)
T PRK11447         40 ATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS-NAYRSSRTTMLLSTPEGRQAL  116 (1157)
T ss_pred             hhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHhcCCchhhHH
Confidence            3577888998888776654  2367888999999999999999999999999887543 222                24


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH-HHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH
Q 006010          123 FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKS-FNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKT  201 (664)
Q Consensus       123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~  201 (664)
                      ..++.+...|++++|++.|+.+++.  .+++... ...........|+.++|+..++++.+..    +.+...+..+...
T Consensus       117 ~~A~ll~~~g~~~eA~~~~~~~l~~--~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~----P~~~~~~~~LA~l  190 (1157)
T PRK11447        117 QQARLLATTGRTEEALASYDKLFNG--APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY----PGNTGLRNTLALL  190 (1157)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHccC--CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Confidence            4556788999999999999998754  3344321 1112222234589999999999998832    2355677788889


Q ss_pred             HHhcCChhHHHHHHhhcccCCC----------------CCCHH---HHH-------------------------------
Q 006010          202 VCRLGLVDNAIQLFREMPVRNC----------------EPDIY---TYC-------------------------------  231 (664)
Q Consensus       202 ~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~---~~~-------------------------------  231 (664)
                      +...|+.++|++.++++.....                .++..   .+.                               
T Consensus       191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~  270 (1157)
T PRK11447        191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF  270 (1157)
T ss_pred             HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence            9999999999999998754320                00000   000                               


Q ss_pred             ---HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHH-------
Q 006010          232 ---TLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP-NEVTY-------  300 (664)
Q Consensus       232 ---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~-------  300 (664)
                         .....+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... +...+       
T Consensus       271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~  349 (1157)
T PRK11447        271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN  349 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence               11234556677788888887777653 2356677777777778888888888887776653221 11111       


Q ss_pred             -----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006010          301 -----NTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLIS  375 (664)
Q Consensus       301 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  375 (664)
                           ......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..+. +...+..+..
T Consensus       350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~  427 (1157)
T PRK11447        350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLAN  427 (1157)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence                 112335567777888888888777763 334556666777777788888888888777765433 4445555555


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010          376 GLFKEGKAEDAMKLWKQMMEKGCK--------PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGF  447 (664)
Q Consensus       376 ~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  447 (664)
                      .+. .++.++|+.+++.+......        .....+..+...+...|++++|...|+++++.. +.+...+..+...|
T Consensus       428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~  505 (1157)
T PRK11447        428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL  505 (1157)
T ss_pred             HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            553 34566666666544321100        001223345556667788888888888887764 44666777778888


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC-------------------------
Q 006010          448 FESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG-------------------------  502 (664)
Q Consensus       448 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------------  502 (664)
                      .+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+....                         
T Consensus       506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~  584 (1157)
T PRK11447        506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR  584 (1157)
T ss_pred             HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence            88888888888888877654 3344333333334445555555555554432211                         


Q ss_pred             --------------CCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHH
Q 006010          503 --------------CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLN  568 (664)
Q Consensus       503 --------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  568 (664)
                                    .+++...+..+...+.+.|++++|+..|++++...|.   +...+..++..+...|++++|.+.++
T Consensus       585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~---~~~a~~~la~~~~~~g~~~eA~~~l~  661 (1157)
T PRK11447        585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG---NADARLGLIEVDIAQGDLAAARAQLA  661 (1157)
T ss_pred             HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                          1223334445555555566666666666665443333   44455555555656666666666666


Q ss_pred             HHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCC--CC---ChHHHHHHHH
Q 006010          569 SMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFL--SP---QTSTWERVVQ  643 (664)
Q Consensus       569 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~  643 (664)
                      +..+  ..|+...                    ....++.++...|++++|.++++++.+..-  +|   +..++..++.
T Consensus       662 ~ll~--~~p~~~~--------------------~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~  719 (1157)
T PRK11447        662 KLPA--TANDSLN--------------------TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAAR  719 (1157)
T ss_pred             HHhc--cCCCChH--------------------HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHH
Confidence            5544  3333322                    122345558899999999999999987521  12   2256777899


Q ss_pred             HhcccchHHHHHHHHHhhh
Q 006010          644 ELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       644 ~~~~~g~~~~A~~~~~~~l  662 (664)
                      .+...|+.++|++.|++.+
T Consensus       720 ~~~~~G~~~~A~~~y~~Al  738 (1157)
T PRK11447        720 FEAQTGQPQQALETYKDAM  738 (1157)
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            9999999999999998876

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=1.2e-24  Score=245.05  Aligned_cols=541  Identities=12%  Similarity=0.045  Sum_probs=352.1

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH--------
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKS--------  156 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------  156 (664)
                      .+...+......++.+.|.+.+.++....+. ++.++..++..+.+.|+.++|.+.++++.+..  +.+...        
T Consensus        30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~  106 (1157)
T PRK11447         30 QLLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTML  106 (1157)
T ss_pred             HHHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHH
Confidence            3555677888999999999999999987744 68889999999999999999999999997753  333322        


Q ss_pred             --------HHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHH-HHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCH
Q 006010          157 --------FNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTL-TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDI  227 (664)
Q Consensus       157 --------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~  227 (664)
                              ....+..+.+.|++++|+..|+.+.+.    .+|+.. ............|+.++|++.++++.+.. +.+.
T Consensus       107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~----~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~  181 (1157)
T PRK11447        107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNG----APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNT  181 (1157)
T ss_pred             hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC----CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCH
Confidence                    234455788999999999999999872    223322 11111222234599999999999999875 5577


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----------------CCHH---HHH----------------------
Q 006010          228 YTYCTLMDGLCKENRLDEAVLLLDEMQVDGCF----------------PTPV---TFN----------------------  266 (664)
Q Consensus       228 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------------~~~~---~~~----------------------  266 (664)
                      ..+..+...+...|+.++|++.++++......                ++..   .+.                      
T Consensus       182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~  261 (1157)
T PRK11447        182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ  261 (1157)
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            88899999999999999999999988653210                0000   010                      


Q ss_pred             ------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-Chh
Q 006010          267 ------------VLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMP-NEV  333 (664)
Q Consensus       267 ------------~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~  333 (664)
                                  .....+...|++++|+..|++...... .+...+..+...+.+.|++++|...|++..+..... ...
T Consensus       262 ~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~  340 (1157)
T PRK11447        262 QKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD  340 (1157)
T ss_pred             HHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence                        112334556777777777777766532 255666677777777777777777777776643111 111


Q ss_pred             hH------------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006010          334 TY------------GTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN  401 (664)
Q Consensus       334 ~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  401 (664)
                      .+            ......+.+.|++++|...++++.+..+. +...+..+..++...|++++|++.|+++.+.... +
T Consensus       341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~  418 (1157)
T PRK11447        341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-N  418 (1157)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence            11            11233455677777777777777766433 4555666677777777777777777777765322 3


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 006010          402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGC--------AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEV  473 (664)
Q Consensus       402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  473 (664)
                      ...+..+...+. .++.++|..+++.+.....        ......+..+...+...|++++|++.+++..+.. |.+..
T Consensus       419 ~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~  496 (1157)
T PRK11447        419 TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVW  496 (1157)
T ss_pred             HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            444555555553 3456777666655432110        0011234455667778889999999999888866 44666


Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC---------------
Q 006010          474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP---------------  538 (664)
Q Consensus       474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------  538 (664)
                      .+..+...|...|++++|...++++++.. +.+...+..+...+...|+.++|...++.+.....               
T Consensus       497 ~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~  575 (1157)
T PRK11447        497 LTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ  575 (1157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence            77778888899999999999999887642 22333444444444556666666666555411000               


Q ss_pred             ----------------------CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCC
Q 006010          539 ----------------------KSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAP  596 (664)
Q Consensus       539 ----------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~  596 (664)
                                            ..+.+...+..+...+.+.|++++|+..|+++++  ..|+...               
T Consensus       576 ~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~---------------  638 (1157)
T PRK11447        576 VLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNAD---------------  638 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH---------------
Confidence                                  0111222334444555555555555555555554  2333221               


Q ss_pred             CCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          597 QDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       597 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                           .+..++.+|...|++++|.+.++++.+. -+.++..+..++.++...|++++|.+.+.+.+
T Consensus       639 -----a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  698 (1157)
T PRK11447        639 -----ARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLI  698 (1157)
T ss_pred             -----HHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence                 1223445589999999999999988764 23456778888999999999999999888754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=2.3e-22  Score=215.64  Aligned_cols=547  Identities=13%  Similarity=0.089  Sum_probs=359.0

Q ss_pred             CCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006010           60 KSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIR  139 (664)
Q Consensus        60 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  139 (664)
                      ..+.+.|...|+.+.+..+  -++.++..+...|...|++++|+..++...+.++ .+...+..+..    .+++++|.+
T Consensus        57 ~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~----i~~~~kA~~  129 (987)
T PRK09782         57 NNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAA----IPVEVKSVT  129 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHH----hccChhHHH
Confidence            4677789999998877653  3578889999999999999999999999998764 35544444422    289999999


Q ss_pred             HHHHhhhcCCCCCCHHHHHHHHHH--------HHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHH-HHHHHhcCChhH
Q 006010          140 LFHTMVDEFHCKRTVKSFNSVLNV--------IIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLV-IKTVCRLGLVDN  210 (664)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~  210 (664)
                      +++++.+..+..  ...+..+...        |.+.++..++++    ...   ....|+..+.... ...|.+.|++++
T Consensus       130 ~ye~l~~~~P~n--~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~---~~~~~~~~vL~L~~~rlY~~l~dw~~  200 (987)
T PRK09782        130 TVEELLAQQKAC--DAVPTLRCRSEVGQNALRLAQLPVARAQLN----DAT---FAASPEGKTLRTDLLQRAIYLKQWSQ  200 (987)
T ss_pred             HHHHHHHhCCCC--hhHHHHHHHHhhccchhhhhhHHHHHHHHH----Hhh---hCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence            999998864333  4444444444        666655555554    222   1223345544444 889999999999


Q ss_pred             HHHHHhhcccCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010          211 AIQLFREMPVRNCEPDIYTYCTLMDGLCK-ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMF  289 (664)
Q Consensus       211 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  289 (664)
                      |++.+.++.+.+ +.+......|..+|.. .++ +++..+++.    .+..++..+..++..|.+.|+.++|.++++++.
T Consensus       201 Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~  274 (987)
T PRK09782        201 ADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENK  274 (987)
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            999999999886 4556667778788887 466 777777553    223578889999999999999999999998875


Q ss_pred             HcCCC-CCHHHH------------------------------HHHHHHHHhcCChHHHHHHH------------------
Q 006010          290 LKGCL-PNEVTY------------------------------NTLIHGLCLKGNLDKAVSLL------------------  320 (664)
Q Consensus       290 ~~g~~-p~~~~~------------------------------~~l~~~~~~~g~~~~a~~~~------------------  320 (664)
                      ..-.. |...++                              ..++..+.+.++++.+.++.                  
T Consensus       275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  354 (987)
T PRK09782        275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA  354 (987)
T ss_pred             ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence            43111 211111                              11234444555555444432                  


Q ss_pred             -----------HHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC---hH
Q 006010          321 -----------DRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER--KFHVNEYIYSTLISGLFKEGK---AE  384 (664)
Q Consensus       321 -----------~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~  384 (664)
                                 +.|.+.. +-+......+.-.....|+.++|.+++......  +-..+......++..|.+.+.   ..
T Consensus       355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  433 (987)
T PRK09782        355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA  433 (987)
T ss_pred             cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence                       1111110 113333333444556788888888888887662  122244555567777776655   33


Q ss_pred             HHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006010          385 DAMKL----------------------WKQMMEK-GC-KP--NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAF  438 (664)
Q Consensus       385 ~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  438 (664)
                      ++..+                      ++..... +. ++  +...|..+..++.. +++++|...+.+....  .|+..
T Consensus       434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~  510 (987)
T PRK09782        434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW  510 (987)
T ss_pred             HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence            33222                      1111111 11 22  45566666666665 7888888877777765  34444


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHH
Q 006010          439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLC  518 (664)
Q Consensus       439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  518 (664)
                      ....+...+...|++++|...|+++...  +|+...+..+...+...|+.++|...+++.++.. +++...+..+.....
T Consensus       511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~  587 (987)
T PRK09782        511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY  587 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence            4444455556788888888888887554  3444455666777788888888888888887753 222233333444445


Q ss_pred             HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCC
Q 006010          519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQD  598 (664)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~  598 (664)
                      ..|++++|...+++++..    .|+...|..+..++.+.|++++|+..+++..+  ..|+.......+..+         
T Consensus       588 ~~Gr~~eAl~~~~~AL~l----~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~a---------  652 (987)
T PRK09782        588 IPGQPELALNDLTRSLNI----APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYA---------  652 (987)
T ss_pred             hCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH---------
Confidence            568888888888888643    34566777888888888888888888888887  567766544444432         


Q ss_pred             chhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          599 GTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                                 +...|++++|.+.++++.+. .+.++..+..++.++...|++++|++.+++.+
T Consensus       653 -----------L~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        653 -----------LWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             -----------HHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                       77777888888888877764 23456777778888888888888877777654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=6.5e-22  Score=212.26  Aligned_cols=521  Identities=12%  Similarity=0.065  Sum_probs=366.5

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 006010           86 FYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVII  165 (664)
Q Consensus        86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (664)
                      +......+...|++++|...|+.+++..+. +..++..++..|...|++++|+..+++.++.  .+.+...+..+ ..+ 
T Consensus        47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~L-a~i-  121 (987)
T PRK09782         47 RLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSL-AAI-  121 (987)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH-HHh-
Confidence            333445556669999999999999998866 5889999999999999999999999999764  33444444444 222 


Q ss_pred             HcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHH--------HHhcCChhHHHHHHhhcccCCCCCCHHHHHHH-HH
Q 006010          166 QEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKT--------VCRLGLVDNAIQLFREMPVRNCEPDIYTYCTL-MD  235 (664)
Q Consensus       166 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~  235 (664)
                        +++.+|..+|+++.+.     .|+ ..++..+...        |.+.   ++|.+.++ .......|+..+.... ..
T Consensus       122 --~~~~kA~~~ye~l~~~-----~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~r  190 (987)
T PRK09782        122 --PVEVKSVTTVEELLAQ-----QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQ  190 (987)
T ss_pred             --ccChhHHHHHHHHHHh-----CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHH
Confidence              8899999999999883     333 3444444443        5555   55555554 3333223345544444 89


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006010          236 GLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK-NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLD  314 (664)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~  314 (664)
                      .|.+.|++++|+++++++.+.+. .+......|..+|.. .++ +++..+++.    .++-+...+..++..+.+.|+.+
T Consensus       191 lY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~  264 (987)
T PRK09782        191 RAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKA  264 (987)
T ss_pred             HHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999863 355567777778887 466 888888553    23357888999999999999999


Q ss_pred             HHHHHHHHHHHCCCC-CChhhH------------------------------HHHHHHHHhcCChhHHHHHHH-------
Q 006010          315 KAVSLLDRMVASKCM-PNEVTY------------------------------GTIINGLVKLGRAVDGARVLM-------  356 (664)
Q Consensus       315 ~a~~~~~~~~~~~~~-~~~~~~------------------------------~~ll~~~~~~~~~~~a~~~~~-------  356 (664)
                      +|.++++++...-.. |...++                              ..++..+.+.++++.+.++..       
T Consensus       265 ~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (987)
T PRK09782        265 RLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM  344 (987)
T ss_pred             HHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH
Confidence            999999987543111 222222                              122455566666665554422       


Q ss_pred             ----------------------HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHH
Q 006010          357 ----------------------SMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEK-G-CKPNTVVYSALIDGL  412 (664)
Q Consensus       357 ----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~  412 (664)
                                            .|.... +-+......+.....+.|+.++|..+++..... + ...+......++..|
T Consensus       345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~  423 (987)
T PRK09782        345 LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL  423 (987)
T ss_pred             HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence                                  111110 113333344444566889999999999998872 1 223444555777777


Q ss_pred             HhcCC---hhHHHHH-------------------------HHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006010          413 CRVGK---PDEAEEI-------------------------LFEMINNGCAA--NAFTYSSLMKGFFESGKGHKAVEIWKD  462 (664)
Q Consensus       413 ~~~~~---~~~a~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~  462 (664)
                      .+.+.   ..++..+                         +...... .++  +...+..+..++.. ++.++|+..+.+
T Consensus       424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~  501 (987)
T PRK09782        424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ  501 (987)
T ss_pred             HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence            76655   2222222                         2222222 244  67788888888876 899999998888


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC
Q 006010          463 MAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP  542 (664)
Q Consensus       463 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  542 (664)
                      .....  |+......+...+...|++++|...|+++...  .|+...+..++.++.+.|++++|..++++++...+.   
T Consensus       502 Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~---  574 (987)
T PRK09782        502 AEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG---  574 (987)
T ss_pred             HHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---
Confidence            87765  55544444555667899999999999998764  455566777888899999999999999999654322   


Q ss_pred             CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHH
Q 006010          543 DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKI  622 (664)
Q Consensus       543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  622 (664)
                      +...+..+...+.+.|++++|...+++.++  ..|+...+..+...                     +.+.|++++|...
T Consensus       575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~---------------------l~~lG~~deA~~~  631 (987)
T PRK09782        575 DNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATI---------------------YRQRHNVPAAVSD  631 (987)
T ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHH---------------------HHHCCCHHHHHHH
Confidence            333333444445566999999999999998  67876556555444                     9999999999999


Q ss_pred             HHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          623 VEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      ++++.+. -+.++..+..++..+...|+.++|++.+.+.+
T Consensus       632 l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL  670 (987)
T PRK09782        632 LRAALEL-EPNNSNYQAALGYALWDSGDIAQSREMLERAH  670 (987)
T ss_pred             HHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999985 34467889999999999999999999998865

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.94  E-value=4.1e-23  Score=195.93  Aligned_cols=438  Identities=15%  Similarity=0.094  Sum_probs=338.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010          121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK  200 (664)
Q Consensus       121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~  200 (664)
                      ...++.-..+.|++++|++.....-.+  .+.+......+-..+.+..+.+.....-....+.    .+.-..+|..+..
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~----~~q~ae~ysn~aN  124 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK----NPQGAEAYSNLAN  124 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhc----cchHHHHHHHHHH
Confidence            455666667888888888877655333  2223333444455556666666655554444441    2224568888888


Q ss_pred             HHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChh
Q 006010          201 TVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFN-VLINGLCKNGELG  279 (664)
Q Consensus       201 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~  279 (664)
                      .+...|++++|+..++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+.  .|+..... .+...+-..|+++
T Consensus       125 ~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~  201 (966)
T KOG4626|consen  125 ILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLE  201 (966)
T ss_pred             HHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccc
Confidence            8888899999999998888774 345778888888999999999999988888775  35544333 2334445578889


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010          280 RAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSME  359 (664)
Q Consensus       280 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  359 (664)
                      +|...+.+.++... --...|+.|...+-..|+...|++.|++.+..+ +.-...|..|.+.|...+.++.|...+.+..
T Consensus       202 ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl  279 (966)
T KOG4626|consen  202 EAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRAL  279 (966)
T ss_pred             hhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence            99888888877632 134578888888888999999999999988753 2234678888888888999999999888877


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010          360 ERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFT  439 (664)
Q Consensus       360 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  439 (664)
                      ...+. ....+..+...|..+|..|.|+..|++.++.... -...|+.+..++-..|++.+|.+.|.+.+... +.-...
T Consensus       280 ~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada  356 (966)
T KOG4626|consen  280 NLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA  356 (966)
T ss_pred             hcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence            66433 5677788888899999999999999999886322 35689999999999999999999999999874 556778


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHH
Q 006010          440 YSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLC  518 (664)
Q Consensus       440 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~  518 (664)
                      .+.|...|...|.+++|..+|....+-. +.-....+.|...|-++|++++|+..+++.++  +.|+ ..+|+.+...|-
T Consensus       357 m~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k  433 (966)
T KOG4626|consen  357 MNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK  433 (966)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence            8999999999999999999999988754 33445788899999999999999999999987  5777 478999999999


Q ss_pred             HcCCHHHHHHHHHHhhhcCCCCCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010          519 NAGSVEEALKLFNEMLCLEPKSQPD-VFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT  581 (664)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  581 (664)
                      ..|+.+.|...+.+++.    ..|. ...++.|...|...|+..+|++-+++.++  ++||...
T Consensus       434 e~g~v~~A~q~y~rAI~----~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd  491 (966)
T KOG4626|consen  434 EMGDVSAAIQCYTRAIQ----INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD  491 (966)
T ss_pred             HhhhHHHHHHHHHHHHh----cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence            99999999999999964    3333 34678899999999999999999999997  7888544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=3e-22  Score=190.16  Aligned_cols=446  Identities=17%  Similarity=0.169  Sum_probs=362.1

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 006010           84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNV  163 (664)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (664)
                      .....+.+...+.|++.+|++.....-..+ +.+......+-..+.+..+++.....-...++.  .+.-.++|..+.+.
T Consensus        49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~  125 (966)
T KOG4626|consen   49 DDRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANI  125 (966)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHH
Confidence            346778889999999999998877666554 334445555666677777777655544333332  45567899999999


Q ss_pred             HHHcCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHH-HHHHHHHHHhcC
Q 006010          164 IIQEGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYT-YCTLMDGLCKEN  241 (664)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g  241 (664)
                      +-..|++++|+..|+.+++     ..| ....|..+..++...|+.+.|.+.|.+.++.  .|+... .+.+....-..|
T Consensus       126 ~kerg~~~~al~~y~~aie-----l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~G  198 (966)
T KOG4626|consen  126 LKERGQLQDALALYRAAIE-----LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEG  198 (966)
T ss_pred             HHHhchHHHHHHHHHHHHh-----cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhc
Confidence            9999999999999999988     344 4568999999999999999999999999887  455554 344555566689


Q ss_pred             ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 006010          242 RLDEAVLLLDEMQVDGCFPT-PVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN-EVTYNTLIHGLCLKGNLDKAVSL  319 (664)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~  319 (664)
                      ++.+|...+.+..+.  .|. ...|..|.-.+-..|+...|++-|++..+.  .|+ ...|..|...|-..+.+++|...
T Consensus       199 rl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~  274 (966)
T KOG4626|consen  199 RLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSC  274 (966)
T ss_pred             ccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHH
Confidence            999999999888775  343 467889999999999999999999999876  343 46888999999999999999999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006010          320 LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK  399 (664)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  399 (664)
                      |.+..... +.....+..+...|-.+|.++.|+..+++..+..+. -...|+.|..++-..|++.+|...|++.+.... 
T Consensus       275 Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-  351 (966)
T KOG4626|consen  275 YLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-  351 (966)
T ss_pred             HHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-
Confidence            99988753 334567778888899999999999999999987654 467899999999999999999999999988643 


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI  479 (664)
Q Consensus       400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  479 (664)
                      ......+.|...+...|.+++|..+|....+.. +.-....+.|...|-++|++++|+..+++.+... |.-...|+.+.
T Consensus       352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmG  429 (966)
T KOG4626|consen  352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMG  429 (966)
T ss_pred             ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcc
Confidence            256778889999999999999999999998863 4456678999999999999999999999998855 33356899999


Q ss_pred             HHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH
Q 006010          480 HGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNA  553 (664)
Q Consensus       480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  553 (664)
                      ..|-..|+++.|.+.+.+.+..  .|. ....+.|...|-..|++.+|+.-|+++++++|+.   +..|..++.+
T Consensus       430 nt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf---pdA~cNllh~  499 (966)
T KOG4626|consen  430 NTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF---PDAYCNLLHC  499 (966)
T ss_pred             hHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC---chhhhHHHHH
Confidence            9999999999999999999984  565 4788999999999999999999999998765542   2344444444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.6e-20  Score=188.03  Aligned_cols=559  Identities=14%  Similarity=0.096  Sum_probs=413.0

Q ss_pred             hhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006010           63 QPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFH  142 (664)
Q Consensus        63 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  142 (664)
                      .+.|.+-|....+..  ++|...+..-.......+++..|..+|..++..++.........+..++.+.|+.+.|+..|.
T Consensus       146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~  223 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE  223 (1018)
T ss_pred             HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence            467788888777654  456666666667777889999999999998887776666677778888899999999999999


Q ss_pred             HhhhcCCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010          143 TMVDEFHCKRTVKSFNSVLNVIIQEG---LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  219 (664)
                      ..++.  .|.++.++-.|...-....   .+..++..+...-...    .-+....+.|...|.-.|++..++.+...+.
T Consensus       224 ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n----~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai  297 (1018)
T KOG2002|consen  224 RALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN----NENPVALNHLANHFYFKKDYERVWHLAEHAI  297 (1018)
T ss_pred             HHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc----CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence            98764  2334555544444433333   3556777777776532    2356678888999999999999999999887


Q ss_pred             cCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010          220 VRNCE--PDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTP--VTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP  295 (664)
Q Consensus       220 ~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p  295 (664)
                      .....  .-...|-.+.++|...|++++|...|.+..+..  ++.  ..+.-+...|.+.|+++.+...|+...... +-
T Consensus       298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~  374 (1018)
T KOG2002|consen  298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PN  374 (1018)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cc
Confidence            65311  124468889999999999999999999887754  343  345567889999999999999999998773 33


Q ss_pred             CHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCH
Q 006010          296 NEVTYNTLIHGLCLKG----NLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSM----EERKFHVNE  367 (664)
Q Consensus       296 ~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~  367 (664)
                      +..+..++...|+..+    ..+.|..++.+..+.. +.|...|..+...+-.. +...++..+..+    ...+..+..
T Consensus       375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~  452 (1018)
T KOG2002|consen  375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPP  452 (1018)
T ss_pred             hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCH
Confidence            5678888888887765    5677888888877653 55777787777766554 444446665543    345555788


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006010          368 YIYSTLISGLFKEGKAEDAMKLWKQMMEK---GCKPNT------VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAF  438 (664)
Q Consensus       368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  438 (664)
                      ...|.+...+...|+++.|...|......   ...+|.      .+-..+....-..++.+.|.+.|..+++.. |.=+.
T Consensus       453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId  531 (1018)
T KOG2002|consen  453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYID  531 (1018)
T ss_pred             HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHH
Confidence            89999999999999999999999988764   122222      223335555666789999999999999873 22234


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCcCHHhHHHHHHHH
Q 006010          439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG-CKPDVVAYSSMIHGL  517 (664)
Q Consensus       439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~  517 (664)
                      .|..+.......+...+|...+......+ ..++..++.+...+.....+..|.+-|+...+.- ..+|..+...|++.|
T Consensus       532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~  610 (1018)
T KOG2002|consen  532 AYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY  610 (1018)
T ss_pred             HHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence            44445444445577888999999888765 5677778888888999889988888777665432 236777777777766


Q ss_pred             HH------------cCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010          518 CN------------AGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF  585 (664)
Q Consensus       518 ~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  585 (664)
                      ..            .+..++|+.+|.+++..+|.   |...-|-+.-.++..|++.+|.++|.+..+... -...+|.  
T Consensus       611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk---N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~l--  684 (1018)
T KOG2002|consen  611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK---NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWL--  684 (1018)
T ss_pred             HHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc---hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceee--
Confidence            43            24578899999999765444   667777888889999999999999999987532 1122222  


Q ss_pred             HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc-CCCCChHHHHHHHHHhcccchHHHHHHHHHhh
Q 006010          586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK-FLSPQTSTWERVVQELCRPKRIQAAINKCWSN  661 (664)
Q Consensus       586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  661 (664)
                                         +|+.||..+|+|-.|+++|+...++ +-.-++.+...|++++.+.|.+.+|.+.....
T Consensus       685 -------------------Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a  742 (1018)
T KOG2002|consen  685 -------------------NLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA  742 (1018)
T ss_pred             -------------------eHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence                               3445599999999999999999887 43457799999999999999999998876553

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.4e-19  Score=181.38  Aligned_cols=553  Identities=13%  Similarity=0.072  Sum_probs=341.4

Q ss_pred             CCChhHHHHHHhhCCCCC-CCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCC------------------------
Q 006010           60 KSEQPFSDEIFNSTPKLG-SYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKR------------------------  114 (664)
Q Consensus        60 ~~~~~~a~~~f~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------  114 (664)
                      ..+.-.|+.+|..+.... ...+++  ...+...+++.|+.+.|...|.++.+.++                        
T Consensus       177 kkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~  254 (1018)
T KOG2002|consen  177 KKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK  254 (1018)
T ss_pred             cccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence            456667777776644322 233332  22233445555666665555555555443                        


Q ss_pred             ------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006010          115 ------------VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHC-KRTVKSFNSVLNVIIQEGLYHRALEFYNHIV  181 (664)
Q Consensus       115 ------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  181 (664)
                                  +.++.+.+.|...|.--|+++.+..+...+....-. ..-..+|..++++|...|++++|...|.+..
T Consensus       255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~  334 (1018)
T KOG2002|consen  255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL  334 (1018)
T ss_pred             HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence                        123334555555555556666666665555432101 0112345566666666666666666666665


Q ss_pred             hcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHhCC
Q 006010          182 NAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN----RLDEAVLLLDEMQVDG  257 (664)
Q Consensus       182 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~  257 (664)
                      +..+.+   -+..+--+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+    ..+.|..++.+.....
T Consensus       335 k~~~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~  410 (1018)
T KOG2002|consen  335 KADNDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT  410 (1018)
T ss_pred             ccCCCC---ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence            522111   12233345566666666666666666665542 334455555555555443    3345555555554432


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCC
Q 006010          258 CFPTPVTFNVLINGLCKNGELGRAAKLVDNMF----LKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS---KCMP  330 (664)
Q Consensus       258 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~  330 (664)
                       +.|...|-.+...+....- ..++..|..+.    ..+..+.....|.+...+...|++.+|...|......   ...+
T Consensus       411 -~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~  488 (1018)
T KOG2002|consen  411 -PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK  488 (1018)
T ss_pred             -cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence             3345555555555544333 23355554432    3344456667777777777777777777777776654   1122


Q ss_pred             Ch------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 006010          331 NE------VTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVV  404 (664)
Q Consensus       331 ~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  404 (664)
                      |.      .+-..+...+-..++.+.|.+.+..+.+..+. -...|-.++......+...+|...++.....+ ..++..
T Consensus       489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~a  566 (1018)
T KOG2002|consen  489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNA  566 (1018)
T ss_pred             cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHH
Confidence            22      12223444455566777777777777765321 22334444433334567778888888877653 336667


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCC
Q 006010          405 YSALIDGLCRVGKPDEAEEILFEMINNG-CAANAFTYSSLMKGFFE------------SGKGHKAVEIWKDMAKNNCVYN  471 (664)
Q Consensus       405 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~  471 (664)
                      ++.+...+.....+..|.+-|+...+.- ..+|..+...|.+.|..            .+..++|+++|.++++.. |.|
T Consensus       567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN  645 (1018)
T KOG2002|consen  567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKN  645 (1018)
T ss_pred             HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cch
Confidence            7777778888888888888777766542 23577777777776653            245678999999999877 778


Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHH
Q 006010          472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILL  551 (664)
Q Consensus       472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  551 (664)
                      ..+-|.+...++..|++.+|..+|.+..+... ....+|..++++|...|++..|++.|+..++ .....-+......|.
T Consensus       646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk-kf~~~~~~~vl~~La  723 (1018)
T KOG2002|consen  646 MYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK-KFYKKNRSEVLHYLA  723 (1018)
T ss_pred             hhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHH
Confidence            88999999999999999999999999998743 3456899999999999999999999999964 333445777888999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          552 NALCKQSNISHSIDLLNSMMDRGCDPD--LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       552 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      +++.+.|.+.+|.+.+.....  ..|.  ...|+..+-...........-...++.+   ....+..+.|.++|..+...
T Consensus       724 ra~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev---~~a~~~le~a~r~F~~ls~~  798 (1018)
T KOG2002|consen  724 RAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEV---LEAVKELEEARRLFTELSKN  798 (1018)
T ss_pred             HHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHhcccccHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999887  4444  3445555544333322222222333333   56667788999999999887


Q ss_pred             C
Q 006010          630 F  630 (664)
Q Consensus       630 ~  630 (664)
                      +
T Consensus       799 ~  799 (1018)
T KOG2002|consen  799 G  799 (1018)
T ss_pred             C
Confidence            4

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.92  E-value=7.6e-20  Score=193.59  Aligned_cols=434  Identities=14%  Similarity=0.033  Sum_probs=274.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006010          195 FNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK  274 (664)
Q Consensus       195 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  274 (664)
                      +......+.+.|++++|+..|++.+..  .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            334455566666666666666666554  4555666666666666777777777766666543 2244566666666777


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 006010          275 NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARV  354 (664)
Q Consensus       275 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  354 (664)
                      .|++++|+..|......+...+. ....++..+..    ..+........+.. +.+...+..+.. |...........-
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~  279 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG  279 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence            77777776666554433211111 11111111111    12222222222221 122222222222 2111111111111


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010          355 LMSMEERKFHVNEYIYSTLISG---LFKEGKAEDAMKLWKQMMEKG-CKP-NTVVYSALIDGLCRVGKPDEAEEILFEMI  429 (664)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~  429 (664)
                      +....+.... ....+..+...   ....+++++|++.|+...+.+ ..| ....+..+...+...|++++|...+++.+
T Consensus       280 ~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal  358 (615)
T TIGR00990       280 LEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI  358 (615)
T ss_pred             hhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            1111111000 00111111111   123467889999999988764 222 34567777888888999999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHh
Q 006010          430 NNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVA  509 (664)
Q Consensus       430 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  509 (664)
                      +.. +.....+..+...+...|++++|...++.+.+.. +.+...|..+...+...|++++|...|++.++.. +.+...
T Consensus       359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~  435 (615)
T TIGR00990       359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS  435 (615)
T ss_pred             HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence            874 4456788888889999999999999999988875 5667888889999999999999999999998863 334667


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHh
Q 006010          510 YSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV-TCNIFLTA  588 (664)
Q Consensus       510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~  588 (664)
                      +..+..++.+.|++++|+..|++++...+.   +...|+.+...+...|++++|+..|++..+  +.|+.. .+..+...
T Consensus       436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l  510 (615)
T TIGR00990       436 HIQLGVTQYKEGSIASSMATFRRCKKNFPE---APDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPL  510 (615)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHH
Confidence            888889999999999999999999654333   567888899999999999999999999987  344321 11111111


Q ss_pred             hhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          589 LKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       589 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      +              ......+...|++++|.++++++.+.. +.+...+..++..+...|++++|++.|.+.+
T Consensus       511 ~--------------~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~  569 (615)
T TIGR00990       511 I--------------NKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAA  569 (615)
T ss_pred             H--------------HHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            0              000111344699999999999988752 3344678899999999999999999988754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.92  E-value=9.6e-20  Score=192.83  Aligned_cols=256  Identities=14%  Similarity=0.099  Sum_probs=140.6

Q ss_pred             CChhHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010          346 GRAVDGARVLMSMEERK-F-HVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEE  423 (664)
Q Consensus       346 ~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  423 (664)
                      +++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+.... ....|..+...+...|++++|..
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence            45566666666655543 1 113344555555666666666666666666554211 23455555556666666666666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 006010          424 ILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC  503 (664)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  503 (664)
                      .|+++++.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++.+... 
T Consensus       387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-  463 (615)
T TIGR00990       387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-  463 (615)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence            666666553 4445566666666666666666666666666554 3344555556666666666666666666666531 


Q ss_pred             CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh----HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010          504 KPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF----TYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL  579 (664)
Q Consensus       504 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  579 (664)
                      +.+...+..+...+...|++++|+..|++++...+...+...    .++.....+...|++++|.+++++..+  +.|+.
T Consensus       464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~  541 (615)
T TIGR00990       464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPEC  541 (615)
T ss_pred             CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence            223455666666666666666666666666544433211110    111111222334666666666666655  33443


Q ss_pred             HH-HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010          580 VT-CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ  628 (664)
Q Consensus       580 ~~-~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  628 (664)
                      .. +..+                     ++++...|++++|.++|+++.+
T Consensus       542 ~~a~~~l---------------------a~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       542 DIAVATM---------------------AQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             HHHHHHH---------------------HHHHHHccCHHHHHHHHHHHHH
Confidence            32 2222                     2236666666666666666655

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=3.8e-20  Score=186.31  Aligned_cols=300  Identities=14%  Similarity=0.121  Sum_probs=203.7

Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCh
Q 006010          272 LCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPN---EVTYGTIINGLVKLGRA  348 (664)
Q Consensus       272 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~  348 (664)
                      +...|++++|...|+++...+. .+..++..+...+...|++++|..+++.+...+..++   ...+..+...|...|++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            3444555555555555554421 1334455555555555555555555555554321111   13345555566666666


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHH
Q 006010          349 VDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNT----VVYSALIDGLCRVGKPDEAEEI  424 (664)
Q Consensus       349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~  424 (664)
                      ++|..+|+++.+... .+..++..++..+.+.|++++|++.++.+.+.+..+..    ..+..+...+...|++++|...
T Consensus       124 ~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        124 DRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            666666666655422 24556666666666777777777777766655432221    2344566677778888888888


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 006010          425 LFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCK  504 (664)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  504 (664)
                      ++++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|...++++.+.  .
T Consensus       203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~  279 (389)
T PRK11788        203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y  279 (389)
T ss_pred             HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence            88887754 44566777788888888889999988888887652222456788889999999999999999999875  4


Q ss_pred             cCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHH
Q 006010          505 PDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK---QSNISHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       505 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~  580 (664)
                      |+...+..++..+.+.|++++|..++++++.    ..|+...++.++..+..   .|+.++++.++++|.+.++.|++.
T Consensus       280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~----~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        280 PGADLLLALAQLLEEQEGPEAAQALLREQLR----RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            6666678889999999999999999999864    35777788888877664   558899999999999877777665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=2.9e-20  Score=187.17  Aligned_cols=299  Identities=16%  Similarity=0.161  Sum_probs=150.9

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhc
Q 006010          126 KAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRL  205 (664)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  205 (664)
                      ..+...|++++|+..|.++++.  .+.+..++..++..+...|++++|..+++.+..............+..+...|.+.
T Consensus        43 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         43 LNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            3345556666666666666543  23344566666666666666666666666665411000000113455556666666


Q ss_pred             CChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHH
Q 006010          206 GLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT----PVTFNVLINGLCKNGELGRA  281 (664)
Q Consensus       206 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a  281 (664)
                      |++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+...|++++|
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            66666666666665542 33455566666666666666666666666655432211    11233444555555666666


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          282 AKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER  361 (664)
Q Consensus       282 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  361 (664)
                      ...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus       200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            66666555442 11334445555555555555555555555554321111233444455555555555555555554443


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCC
Q 006010          362 KFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCR---VGKPDEAEEILFEMINNG  432 (664)
Q Consensus       362 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~  432 (664)
                      .  |+...+..++..+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.+++..+++++.+.+
T Consensus       279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~  348 (389)
T PRK11788        279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ  348 (389)
T ss_pred             C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence            2  22223344445555555555555555554443  3444444444444332   234445555555554433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.89  E-value=2.2e-18  Score=181.49  Aligned_cols=363  Identities=12%  Similarity=0.095  Sum_probs=221.6

Q ss_pred             HHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhc
Q 006010          127 AYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRL  205 (664)
Q Consensus       127 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  205 (664)
                      .+.++.+|+.-.-.|....+......+ ..-...++..+.+.|++++|..+++..+...    +-+......++.+....
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~----p~~~~~l~~l~~~~l~~   89 (656)
T PRK15174         14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA----KNGRDLLRRWVISPLAS   89 (656)
T ss_pred             hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC----CCchhHHHHHhhhHhhc
Confidence            345566666666666555443222222 2234455666667777777777777776621    12333444555566667


Q ss_pred             CChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006010          206 GLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLV  285 (664)
Q Consensus       206 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  285 (664)
                      |+++.|.+.|+++.... +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+
T Consensus        90 g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~  167 (656)
T PRK15174         90 SQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLA  167 (656)
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence            77777777777777664 4456667777777777777777777777776642 234556667777777777777777777


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010          286 DNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV  365 (664)
Q Consensus       286 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  365 (664)
                      +.+...... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|...++++.+..+. 
T Consensus       168 ~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-  244 (656)
T PRK15174        168 RTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-  244 (656)
T ss_pred             HHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Confidence            766555322 22233222 235667777777777777665532233334444455666777777777777777665433 


Q ss_pred             CHHHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAED----AMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYS  441 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  441 (664)
                      +...+..+...+...|++++    |+..+++..+... .+...+..+...+...|++++|...++++++.. +.+...+.
T Consensus       245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~  322 (656)
T PRK15174        245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRA  322 (656)
T ss_pred             CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            45566666677777777664    6666776666532 245566666666777777777777777766653 44455566


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 006010          442 SLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR  501 (664)
Q Consensus       442 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  501 (664)
                      .+..++.+.|++++|...++.+...+ +.+...+..+..++...|+.++|...|++..+.
T Consensus       323 ~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        323 MYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            66666667777777777776666544 122223333455566667777777777666654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=3.1e-18  Score=180.42  Aligned_cols=363  Identities=12%  Similarity=0.106  Sum_probs=288.1

Q ss_pred             HHHhCCCcchHHHHHHHHHhCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010           92 HYANSGDFKSLEMVLYRMRREK--RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL  169 (664)
Q Consensus        92 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (664)
                      .+.+..+++..--.+....+..  .-.+..-...++..+.+.|++++|+.+++..+..  .+.+...+..++.+....|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~   91 (656)
T PRK15174         14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQ   91 (656)
T ss_pred             hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCC
Confidence            4556666766555555444321  1123334567778888999999999999998776  45556677778888889999


Q ss_pred             HhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010          170 YHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLL  249 (664)
Q Consensus       170 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  249 (664)
                      +++|...|+++....+    .+...+..+...+.+.|++++|...++++.... +.+...+..+...+...|++++|...
T Consensus        92 ~~~A~~~l~~~l~~~P----~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~  166 (656)
T PRK15174         92 PDAVLQVVNKLLAVNV----CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISL  166 (656)
T ss_pred             HHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHH
Confidence            9999999999988322    245578888899999999999999999998874 55678899999999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 006010          250 LDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCM  329 (664)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  329 (664)
                      ++.+..... .+...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|...++++.+.. +
T Consensus       167 ~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p  243 (656)
T PRK15174        167 ARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-L  243 (656)
T ss_pred             HHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence            998876542 233344333 3478899999999999998776444455555666778889999999999999999874 4


Q ss_pred             CChhhHHHHHHHHHhcCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006010          330 PNEVTYGTIINGLVKLGRAVD----GARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVY  405 (664)
Q Consensus       330 ~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  405 (664)
                      .+...+..+...+...|++++    |...+++..+..+. +...+..+...+.+.|++++|+..+++..+.... +...+
T Consensus       244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~  321 (656)
T PRK15174        244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVR  321 (656)
T ss_pred             CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence            467778889999999999986    79999999887554 7788999999999999999999999999987533 56677


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010          406 SALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN  467 (664)
Q Consensus       406 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  467 (664)
                      ..+..++...|++++|...++.+...+ +.+...+..+..++...|+.++|...|++..+..
T Consensus       322 ~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        322 AMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            788899999999999999999999864 3333445556778899999999999999998865

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.88  E-value=2.8e-18  Score=184.88  Aligned_cols=406  Identities=13%  Similarity=0.069  Sum_probs=246.6

Q ss_pred             CCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 006010           80 QLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNS  159 (664)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  159 (664)
                      +.++.-..-.+......|+.++|..++..+.... +.+...+..++..+...|++++|+++|++.+..  .+.+...+..
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~   88 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRG   88 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence            4466666777888899999999999999988633 445667888999999999999999999998765  4556777888


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010          160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK  239 (664)
Q Consensus       160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  239 (664)
                      ++..+...|++++|+..++++.+.    .+.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++..
T Consensus        89 la~~l~~~g~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~  162 (765)
T PRK10049         89 LILTLADAGQYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRN  162 (765)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            889999999999999999999872    222444 7778888889999999999999998875 4566777778888888


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHHHc-CCCCCHH-HH---
Q 006010          240 ENRLDEAVLLLDEMQVDGCFPTP------VTFNVLINGLC-----KNGEL---GRAAKLVDNMFLK-GCLPNEV-TY---  300 (664)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~-g~~p~~~-~~---  300 (664)
                      .|..+.|++.++.+..   .|+.      .....++....     ..+++   ++|++.++.+... ...|+.. .+   
T Consensus       163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a  239 (765)
T PRK10049        163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA  239 (765)
T ss_pred             CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence            8999999988876654   2321      01111222221     11223   5566666666543 1122211 11   


Q ss_pred             -HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHH
Q 006010          301 -NTLIHGLCLKGNLDKAVSLLDRMVASKCM-PNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV---NEYIYSTLIS  375 (664)
Q Consensus       301 -~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~  375 (664)
                       ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|...++++.+.....   .......+..
T Consensus       240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~  318 (765)
T PRK10049        240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY  318 (765)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence             11123344557777777777777665421 211 11223556667777777777777765543211   1233444555


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010          376 GLFKEGKAEDAMKLWKQMMEKGC-----------KPN---TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYS  441 (664)
Q Consensus       376 ~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  441 (664)
                      ++.+.|++++|..+++.+.....           .|+   ...+..+...+...|+.++|++.++++.... |.+...+.
T Consensus       319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~  397 (765)
T PRK10049        319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRI  397 (765)
T ss_pred             HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            66667777777777776665421           011   1122333444444555555555555554432 33444444


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 006010          442 SLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLS  500 (664)
Q Consensus       442 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  500 (664)
                      .+...+...|++++|++.+++..... |.+...+...+..+...|++++|..+++++++
T Consensus       398 ~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        398 DYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            55555555555555555555544433 22333344444444445555555555555544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.88  E-value=6e-17  Score=170.75  Aligned_cols=453  Identities=10%  Similarity=0.033  Sum_probs=261.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHH
Q 006010          119 KSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV-KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNL  197 (664)
Q Consensus       119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  197 (664)
                      .....-+....+.|+++.|+..|++.++   ..|+. .....++..+...|+.++|+..+++...   . ..........
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~---p-~n~~~~~lla  107 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESK---AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS---S-MNISSRGLAS  107 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHh---hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc---C-CCCCHHHHHH
Confidence            3444444556788999999999988854   55553 2233788888888999999999988863   1 1112333334


Q ss_pred             HHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006010          198 VIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGE  277 (664)
Q Consensus       198 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  277 (664)
                      +...+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++...  .|+...+..++..+...++
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~  184 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR  184 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence            4567778899999999999998875 455777778888888899999999999888775  4565555445444545666


Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 006010          278 LGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMS  357 (664)
Q Consensus       278 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  357 (664)
                      ..+|++.++++.+.. +-+...+..+..+..+.|-...|.++.++-      |+..+-......     +.+.+.+....
T Consensus       185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~  252 (822)
T PRK14574        185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRM  252 (822)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhh
Confidence            666899999988874 225667778888888888888888776653      222211111100     00111111100


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCH-HHH-H---HHHHHHHhcCChhHHHHHHHHHHHC
Q 006010          358 MEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEK-GCKPNT-VVY-S---ALIDGLCRVGKPDEAEEILFEMINN  431 (664)
Q Consensus       358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~-~---~li~~~~~~~~~~~a~~~~~~~~~~  431 (664)
                          +..++..- .   .   +---.+.|+.-++.+... +..|.. ..| .   -.+-++...|+..++++.|+.+...
T Consensus       253 ----a~~~~~~~-~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~  321 (822)
T PRK14574        253 ----AVLPTRSE-T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE  321 (822)
T ss_pred             ----cccccccc-h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence                00000000 0   0   000123333333333331 111111 111 1   1223445556666666666666655


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC----
Q 006010          432 GCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNC-----VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG----  502 (664)
Q Consensus       432 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----  502 (664)
                      +.+....+-..+.++|...+++++|..+++.+.....     +++......|..++...+++++|..+++.+.+..    
T Consensus       322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~  401 (822)
T PRK14574        322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV  401 (822)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence            5444445556666666666666666666666544321     1223334555666666666666666666665521    


Q ss_pred             ---------CCcCH-HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          503 ---------CKPDV-VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       503 ---------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                               ..||- ..+..++..+...|+..+|++.+++++...|+   |...+..+...+...|.+.+|.+.++.+..
T Consensus       402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~---n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~  478 (822)
T PRK14574        402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA---NQNLRIALASIYLARDLPRKAEQELKAVES  478 (822)
T ss_pred             eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence                     11121 22334455566677777777777777655555   666666667777777777777777765554


Q ss_pred             CCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          573 RGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       573 ~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                        +.|+..........                    ++...|+|.+|.++.+.+.+.
T Consensus       479 --l~P~~~~~~~~~~~--------------------~al~l~e~~~A~~~~~~l~~~  513 (822)
T PRK14574        479 --LAPRSLILERAQAE--------------------TAMALQEWHQMELLTDDVISR  513 (822)
T ss_pred             --hCCccHHHHHHHHH--------------------HHHhhhhHHHHHHHHHHHHhh
Confidence              45554433222221                    156667777777777766653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.88  E-value=1.6e-17  Score=179.04  Aligned_cols=431  Identities=14%  Similarity=0.051  Sum_probs=252.7

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHH
Q 006010          115 VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLT  194 (664)
Q Consensus       115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  194 (664)
                      +.+.....-.+.+....|+.++|++++......  .+.+...+..++..+...|++++|..+|+++++..    +.+...
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~----P~~~~a   85 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE----PQNDDY   85 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHH
Confidence            456666777788888999999999999988542  35566678999999999999999999999988721    234556


Q ss_pred             HHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006010          195 FNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK  274 (664)
Q Consensus       195 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  274 (664)
                      +..+..++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++..
T Consensus        86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~  162 (765)
T PRK10049         86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRN  162 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            7788888899999999999999998774 55666 8888889999999999999999998864 3355666677888888


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh-----cCCh---HHHHHHHHHHHHC-CCCCChh-hHH--
Q 006010          275 NGELGRAAKLVDNMFLKGCLPNE------VTYNTLIHGLCL-----KGNL---DKAVSLLDRMVAS-KCMPNEV-TYG--  336 (664)
Q Consensus       275 ~g~~~~a~~~~~~~~~~g~~p~~------~~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~--  336 (664)
                      .|..+.|+..++....   .|+.      .....++.....     .+++   ++|++.++.+.+. ...|+.. .+.  
T Consensus       163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a  239 (765)
T PRK10049        163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA  239 (765)
T ss_pred             CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence            8999999988876543   2221      011111221111     1122   4455555555532 1111111 010  


Q ss_pred             --HHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHH
Q 006010          337 --TIINGLVKLGRAVDGARVLMSMEERKFH-VNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKP---NTVVYSALID  410 (664)
Q Consensus       337 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~  410 (664)
                        ..+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+.....   .......+..
T Consensus       240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~  318 (765)
T PRK10049        240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY  318 (765)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence              0012233445555555555555544321 111 11113444555555555555555544332110   0122333333


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcCCC
Q 006010          411 GLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN---EVCYSVLIHGLCEDGK  487 (664)
Q Consensus       411 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~  487 (664)
                      ++...|++++|..+++.+.... ++....+..                       ....|+   ...+..+...+...|+
T Consensus       319 a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~-----------------------~~~~p~~~~~~a~~~~a~~l~~~g~  374 (765)
T PRK10049        319 SLLESENYPGALTVTAHTINNS-PPFLRLYGS-----------------------PTSIPNDDWLQGQSLLSQVAKYSND  374 (765)
T ss_pred             HHHhcccHHHHHHHHHHHhhcC-CceEeecCC-----------------------CCCCCCchHHHHHHHHHHHHHHcCC
Confidence            4445555555555555544431 110000000                       000122   1234445556666677


Q ss_pred             hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 006010          488 LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLL  567 (664)
Q Consensus       488 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  567 (664)
                      .++|+++++++.... +.+...+..++..+...|++++|++.+++++...|.   +...+...+..+.+.|++++|..++
T Consensus       375 ~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd---~~~l~~~~a~~al~~~~~~~A~~~~  450 (765)
T PRK10049        375 LPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR---NINLEVEQAWTALDLQEWRQMDVLT  450 (765)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            777777777766542 333456666666677777777777777777543333   3445555555666677777777777


Q ss_pred             HHHHHCCCCCCHHHHHHHHHh
Q 006010          568 NSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       568 ~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      +++++  ..|+......+-..
T Consensus       451 ~~ll~--~~Pd~~~~~~~~~~  469 (765)
T PRK10049        451 DDVVA--REPQDPGVQRLARA  469 (765)
T ss_pred             HHHHH--hCCCCHHHHHHHHH
Confidence            77776  45555544444333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.87  E-value=6.9e-17  Score=170.26  Aligned_cols=462  Identities=14%  Similarity=0.086  Sum_probs=303.3

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL  161 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  161 (664)
                      .+.+...-+....+.|++..|...|+++.+..+.....++ .++..+...|+.++|+..+++...  ..+........++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA  109 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAA  109 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHH
Confidence            4455666677889999999999999999988765433344 888888899999999999999862  2344455556667


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC
Q 006010          162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN  241 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  241 (664)
                      ..+...|++++|+++|+++.+..+    -+...+..++..+...++.++|++.++.+...  .|+...+..++..+...+
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~dP----~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~  183 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKDP----TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD  183 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence            789999999999999999998332    23456667788899999999999999999887  456566655555555567


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006010          242 RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLD  321 (664)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  321 (664)
                      +..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-... ..  ...+..+        +.+.|-+..+
T Consensus       184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l--------~~~~~a~~vr  251 (822)
T PRK14574        184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQL--------ERDAAAEQVR  251 (822)
T ss_pred             hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHH--------HHHHHHHHHh
Confidence            7767999999999874 346778888899999999999999877763221 11  1111111        0111222211


Q ss_pred             HHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC-CHHH----HHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010          322 RMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER-KFHV-NEYI----YSTLISGLFKEGKAEDAMKLWKQMME  395 (664)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~  395 (664)
                      ...    .++..-    -.   +.--.+.|+.-++.+... +..| ....    ..-.+.++...|++.+++..|+.+..
T Consensus       252 ~a~----~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~  320 (822)
T PRK14574        252 MAV----LPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA  320 (822)
T ss_pred             hcc----cccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence            111    111000    00   000123333333333331 1111 1111    12234456667777777777777777


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--
Q 006010          396 KGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG-----CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNC--  468 (664)
Q Consensus       396 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--  468 (664)
                      .+.+....+-..+.++|...+++++|+.++..+....     .+++......|.-+|...+++++|..+++.+.+...  
T Consensus       321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~  400 (822)
T PRK14574        321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ  400 (822)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence            6655455566777777777777777777777776542     122333446677777777777777777777766321  


Q ss_pred             ---------CC--CH-HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhc
Q 006010          469 ---------VY--NE-VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCL  536 (664)
Q Consensus       469 ---------~~--~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (664)
                               .|  |- ..+..++..+...|+..+|.+.++++.... +-|......+...+...|.+.+|+..++.+...
T Consensus       401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l  479 (822)
T PRK14574        401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL  479 (822)
T ss_pred             EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence                     01  11 123445666778888888888888887653 446677778888888888888888888776544


Q ss_pred             CCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010          537 EPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT  581 (664)
Q Consensus       537 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  581 (664)
                      .|.   +.......+.++...|++.+|..+.++..+  ..|+...
T Consensus       480 ~P~---~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~  519 (822)
T PRK14574        480 APR---SLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIP  519 (822)
T ss_pred             CCc---cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchh
Confidence            333   455566677777788888888888888776  4565543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=3.6e-18  Score=156.76  Aligned_cols=486  Identities=12%  Similarity=0.064  Sum_probs=309.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC--HHHH
Q 006010          118 EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN--TLTF  195 (664)
Q Consensus       118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~  195 (664)
                      -.++..+...|....++.+|+..|+-+++..-++.....-..+.+.+.+..++.+|+++|+..+.--+ .+..+  ....
T Consensus       201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvp-sink~~rikil  279 (840)
T KOG2003|consen  201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVP-SINKDMRIKIL  279 (840)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcc-ccchhhHHHHH
Confidence            34566778888888999999999998866444444444445567788889999999999998876211 11111  2355


Q ss_pred             HHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------------CHH
Q 006010          196 NLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFP------------TPV  263 (664)
Q Consensus       196 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------------~~~  263 (664)
                      +.+...+.+.|+++.|+..|+...+.  .|+..+-..|+-++.--|+-++..+.|.+|......+            +..
T Consensus       280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~  357 (840)
T KOG2003|consen  280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN  357 (840)
T ss_pred             hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence            66666788999999999999998877  5777766666667777899999999999987643333            333


Q ss_pred             HHHHHHHH-----HHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH
Q 006010          264 TFNVLING-----LCKNGE--LGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYG  336 (664)
Q Consensus       264 ~~~~li~~-----~~~~g~--~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  336 (664)
                      ..+..|..     .-+.+.  -++++-.--+++.--+.|+-.           .| .+-+.+.++.-.-..+..+.  -.
T Consensus       358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la~dl--ei  423 (840)
T KOG2003|consen  358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELAIDL--EI  423 (840)
T ss_pred             HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhhhhh--hh
Confidence            33322211     111110  111111111111111111110           01 12222222221111000010  01


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010          337 TIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK--EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCR  414 (664)
Q Consensus       337 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  414 (664)
                      .-...+.+.|+++.|.+++.-+.+..-......-+.|-..+.-  -.++.+|...-+...... .-+......-......
T Consensus       424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~  502 (840)
T KOG2003|consen  424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFA  502 (840)
T ss_pred             hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeee
Confidence            1123467889999999988888776443333333333322222  334666666665554321 1122222222223345


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 006010          415 VGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMV  494 (664)
Q Consensus       415 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  494 (664)
                      .|++++|.+.+++.+...-. .......+.-.+...|+.++|++.|-.+...- ..+..+...+...|....+..+|+++
T Consensus       503 ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            78899999999998876321 22222233345677889999998887765422 24666777788888888899999999


Q ss_pred             HHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010          495 WTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG  574 (664)
Q Consensus       495 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  574 (664)
                      +-+.... ++.|+.++..|...|-+.|+-.+|.+.+-+--   .-.+-|..+...|...|....-+++|+..|++..-  
T Consensus       581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--  654 (840)
T KOG2003|consen  581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--  654 (840)
T ss_pred             HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence            8877664 45567788889999999999999888775542   22444777888888888888888999999988875  


Q ss_pred             CCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccch
Q 006010          575 CDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKR  650 (664)
Q Consensus       575 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  650 (664)
                      +.|+...|..++..|                    +.+.|++..|.++++...++ ++.+..+...|++.+...|-
T Consensus       655 iqp~~~kwqlmiasc--------------------~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  655 IQPNQSKWQLMIASC--------------------FRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             cCccHHHHHHHHHHH--------------------HHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            789999999888887                    88899999999999998876 77788899999888887774

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=2.1e-17  Score=151.75  Aligned_cols=482  Identities=13%  Similarity=0.102  Sum_probs=316.9

Q ss_pred             CCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhcCCC-C--CCH
Q 006010           79 YQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSF-IFIFKAYGKAHLVEEAIRLFHTMVDEFHC-K--RTV  154 (664)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~  154 (664)
                      ...+..++..+.+.|..+....+|...|+-+++...-++...+ ..+...+.+...+..|++.|+..+...+. .  -.+
T Consensus       197 ldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ri  276 (840)
T KOG2003|consen  197 LDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRI  276 (840)
T ss_pred             ccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHH
Confidence            3445667778888999999999999999999877554444332 35667788899999999999987764221 1  124


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHH-----
Q 006010          155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYT-----  229 (664)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----  229 (664)
                      ...+.+...+++.|+++.|+.-|+...+     ..|+..+-..++-++...|+.++..+.|..|...-..+|..-     
T Consensus       277 kil~nigvtfiq~gqy~dainsfdh~m~-----~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~  351 (840)
T KOG2003|consen  277 KILNNIGVTFIQAGQYDDAINSFDHCME-----EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK  351 (840)
T ss_pred             HHHhhcCeeEEecccchhhHhhHHHHHH-----hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence            5677788889999999999999999977     457877655566666778999999999999876433333221     


Q ss_pred             ---HHHHHHHHHhcCChh--------HHHHHHHH---HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010          230 ---YCTLMDGLCKENRLD--------EAVLLLDE---MQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP  295 (664)
Q Consensus       230 ---~~~l~~~~~~~g~~~--------~a~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p  295 (664)
                         -..|+.-..+...+.        .|.+..-.   +...-+.|+-           ..| .+-+++.++.-....+..
T Consensus       352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f-----------a~g-~dwcle~lk~s~~~~la~  419 (840)
T KOG2003|consen  352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF-----------AAG-CDWCLESLKASQHAELAI  419 (840)
T ss_pred             CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch-----------hcc-cHHHHHHHHHhhhhhhhh
Confidence               112222222221111        11111111   1111011110           001 222333333222111111


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006010          296 NEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLV--KLGRAVDGARVLMSMEERKFHVNEYIYSTL  373 (664)
Q Consensus       296 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  373 (664)
                      +..  ..-...+.+.|+++.|.++++-+.+..-+.....-+.|...+.  -..++.+|...-+.......- +......-
T Consensus       420 dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nk  496 (840)
T KOG2003|consen  420 DLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNK  496 (840)
T ss_pred             hhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcC
Confidence            111  1122356789999999999998876643322222232222222  234677777776666543211 22333333


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006010          374 ISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKG  453 (664)
Q Consensus       374 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  453 (664)
                      ......+|++++|.+.|++.+..... ....+-.+.-.+-..|+.++|++.|-++... +..+..+...+...|....+.
T Consensus       497 gn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~  574 (840)
T KOG2003|consen  497 GNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP  574 (840)
T ss_pred             CceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence            33445689999999999999875322 2222333344567789999999998877543 234778888899999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010          454 HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEM  533 (664)
Q Consensus       454 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (664)
                      .+|++++.+.... +|.|+...+.|...|-+.|+-.+|.+.+-+--.. ++-+..+...|...|....-.++|+.+|+++
T Consensus       575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka  652 (840)
T KOG2003|consen  575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA  652 (840)
T ss_pred             HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999877653 4678889999999999999999999987765543 4556778888888899999999999999987


Q ss_pred             hhcCCCCCCCHhHHHHHHHH-HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010          534 LCLEPKSQPDVFTYNILLNA-LCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL  589 (664)
Q Consensus       534 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~  589 (664)
                      -    -++|+..-|..++.. +.+.|++.+|+++++..... .+-|......+++.|
T Consensus       653 a----liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~  704 (840)
T KOG2003|consen  653 A----LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA  704 (840)
T ss_pred             H----hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence            3    378999999988855 56799999999999998863 455556666666653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.83  E-value=8.2e-15  Score=146.76  Aligned_cols=566  Identities=13%  Similarity=0.104  Sum_probs=307.7

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 006010           84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNV  163 (664)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (664)
                      .......+.+...|++++|..++..+++.. +....+|..|..+|-..|+.++++..+-.+  .+-.+.|...|..+...
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHH
Confidence            344445566667788888888888888876 446678888888888888888888876544  33356677888888888


Q ss_pred             HHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHH----HHHHHHh
Q 006010          164 IIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCT----LMDGLCK  239 (664)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~  239 (664)
                      ..+.|++.+|.-+|.++++..    +++...+-.-+..|-+.|+...|...|.++.....+.|..-+..    .++.+..
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~----p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~  292 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQAN----PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT  292 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence            888888888888888888732    23444555566778888888888888888877753233333333    3455666


Q ss_pred             cCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------------------------
Q 006010          240 ENRLDEAVLLLDEMQVDG-CFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCL------------------------  294 (664)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~------------------------  294 (664)
                      .++-+.|.+.++.....+ -.-+...++.++..+.+...++.|......+......                        
T Consensus       293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~  372 (895)
T KOG2076|consen  293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK  372 (895)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence            777788888777766521 2234456677777777777777777777666551111                        


Q ss_pred             ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 006010          295 ---PNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASK--CMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYI  369 (664)
Q Consensus       295 ---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  369 (664)
                         ++...+ -++-++......+....+...+....  +.-+...|..+..+|...|++.+|..++..+......-+...
T Consensus       373 ~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v  451 (895)
T KOG2076|consen  373 ELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV  451 (895)
T ss_pred             CCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence               111110 11112222222233333333333332  122334444455555555555555555555544433334445


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--------HCCCCCCHHHHH
Q 006010          370 YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMI--------NNGCAANAFTYS  441 (664)
Q Consensus       370 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~  441 (664)
                      |-.+..+|...|.++.|++.|+..+.... .+...-..|-..+.+.|++++|.+.++.+.        ..+..|+.....
T Consensus       452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~  530 (895)
T KOG2076|consen  452 WYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA  530 (895)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence            55555555555555555555555544311 122223333334444555555555544421        112233333222


Q ss_pred             HHHHHHHhcCChHHHHHHHHHH----------------------------------------------------------
Q 006010          442 SLMKGFFESGKGHKAVEIWKDM----------------------------------------------------------  463 (664)
Q Consensus       442 ~l~~~~~~~~~~~~a~~~~~~~----------------------------------------------------------  463 (664)
                      ...+.+...|+.++-+.+-..|                                                          
T Consensus       531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~  610 (895)
T KOG2076|consen  531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT  610 (895)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence            2222233333222211111000                                                          


Q ss_pred             -----HHCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CcCH---HhHHHHHHHHHHcCCHHHHHHHHH
Q 006010          464 -----AKNNCVYNE--VCYSVLIHGLCEDGKLREARMVWTQMLSRGC--KPDV---VAYSSMIHGLCNAGSVEEALKLFN  531 (664)
Q Consensus       464 -----~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~  531 (664)
                           ...+...+.  ..+..++..+++.+++++|+.+...+.....  .++.   ..-...+.+.+..+++..|...++
T Consensus       611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR  690 (895)
T KOG2076|consen  611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLR  690 (895)
T ss_pred             hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence                 000100011  2345566677777777777777776665421  1221   112334455566777777777777


Q ss_pred             HhhhcCC-CCCC-CHhHHHHHHHHH-----------------------------------HHcCChhHHHHHHHHHHHCC
Q 006010          532 EMLCLEP-KSQP-DVFTYNILLNAL-----------------------------------CKQSNISHSIDLLNSMMDRG  574 (664)
Q Consensus       532 ~~~~~~~-~~~~-~~~~~~~l~~~~-----------------------------------~~~g~~~~A~~~~~~~~~~~  574 (664)
                      .++.... ...| -...|+..++..                                   ...+.+..|+..+-++..  
T Consensus       691 ~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--  768 (895)
T KOG2076|consen  691 SVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--  768 (895)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--
Confidence            6653200 0011 122333222221                                   224556667776666655  


Q ss_pred             CCCCHHHHHHHHHhhhhhcc--------------------------CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010          575 CDPDLVTCNIFLTALKEKLE--------------------------APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ  628 (664)
Q Consensus       575 ~~p~~~~~~~ll~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  628 (664)
                      ..||....+..+...-.+..                          .+.+..+.+=+||.+|-..|-..-|..+++++++
T Consensus       769 ~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~  848 (895)
T KOG2076|consen  769 QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE  848 (895)
T ss_pred             hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence            56665544444433211110                          0111122233788999999999999999999987


Q ss_pred             cCCCC-------------ChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          629 KFLSP-------------QTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       629 ~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      .  +|             -...-..|.-.|...|+.+.|.+++.+-+
T Consensus       849 ~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl  893 (895)
T KOG2076|consen  849 V--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL  893 (895)
T ss_pred             C--CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence            4  22             12334556678899999999998876643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.83  E-value=7.4e-15  Score=147.11  Aligned_cols=499  Identities=15%  Similarity=0.067  Sum_probs=345.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH
Q 006010          122 IFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKT  201 (664)
Q Consensus       122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~  201 (664)
                      ...+......|++++|.+++.++++.  .+.....|..|...|-+.|+.+++...+-.+..-    .+-|...|..+...
T Consensus       143 l~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL----~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  143 LGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL----NPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCChHHHHHHHHH
Confidence            33444455569999999999999887  5677889999999999999999999988777541    22356789999999


Q ss_pred             HHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCC
Q 006010          202 VCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVT----FNVLINGLCKNGE  277 (664)
Q Consensus       202 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~  277 (664)
                      ..+.|.+++|.-.|.+.++.. +++...+-.-+..|-+.|+...|..-|.++.....+.|..-    ....++.+...++
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~  295 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE  295 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence            999999999999999999886 66666666778889999999999999999988643222222    2334566777888


Q ss_pred             hhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---------------------------CCCC
Q 006010          278 LGRAAKLVDNMFLK-GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVA---------------------------SKCM  329 (664)
Q Consensus       278 ~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------------~~~~  329 (664)
                      -+.|.+.++..... +-..+...+++++..+.+...++.+.........                           .++.
T Consensus       296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s  375 (895)
T KOG2076|consen  296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS  375 (895)
T ss_pred             HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence            89999999988773 2233556788889999999999999888877765                           1233


Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 006010          330 PNEVTYGTIINGLVKLGRAVDGARVLMSMEERK--FHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSA  407 (664)
Q Consensus       330 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  407 (664)
                      ++..++. +.-++......+....+.....+..  +.-+...|..+..+|.+.|++..|+.+|..+......-+...|-.
T Consensus       376 ~~l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~  454 (895)
T KOG2076|consen  376 YDLRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK  454 (895)
T ss_pred             ccchhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence            4444422 2334555555555555666666655  444677899999999999999999999999998766667889999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------CCCCCCHHHHHHHH
Q 006010          408 LIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAK--------NNCVYNEVCYSVLI  479 (664)
Q Consensus       408 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~  479 (664)
                      +..+|...|..++|.+.|+.++... |.+...-..|...+.+.|+.++|.+.+..+..        ....|+........
T Consensus       455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~  533 (895)
T KOG2076|consen  455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC  533 (895)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence            9999999999999999999999874 55677778888899999999999999988432        23445544444444


Q ss_pred             HHHHcCCChHHHHHHHHHHHhC----------------------------------------------------------
Q 006010          480 HGLCEDGKLREARMVWTQMLSR----------------------------------------------------------  501 (664)
Q Consensus       480 ~~~~~~g~~~~A~~~~~~~~~~----------------------------------------------------------  501 (664)
                      ..+...|+.++-..+...|+..                                                          
T Consensus       534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~  613 (895)
T KOG2076|consen  534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR  613 (895)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence            4555555544432222221110                                                          


Q ss_pred             -----CCCcCH--HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH---hHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          502 -----GCKPDV--VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV---FTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       502 -----~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                           |+..+.  ..+.-++..+++.+++++|..+...++....-..++.   ..-...+.+.+..+++..|...++.|.
T Consensus       614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i  693 (895)
T KOG2076|consen  614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI  693 (895)
T ss_pred             hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                 000010  1224466678899999999999988854332222222   123345566778899999999999998


Q ss_pred             HC-C--CCCCHH-HHHHHHHhhhhhcc--------------CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          572 DR-G--CDPDLV-TCNIFLTALKEKLE--------------APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       572 ~~-~--~~p~~~-~~~~ll~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      .. +  ..|... .|+..++.+...+.              .++......--.|..+...+.+..|...+-++...
T Consensus       694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~  769 (895)
T KOG2076|consen  694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ  769 (895)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh
Confidence            53 1  122222 23322222221111              12221222112334466777888888887777764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.82  E-value=1.1e-13  Score=133.49  Aligned_cols=479  Identities=14%  Similarity=0.077  Sum_probs=286.3

Q ss_pred             hcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChh
Q 006010          130 KAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVD  209 (664)
Q Consensus       130 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  209 (664)
                      .....++|+.++.+..+-  ++.+...|.++    .+..-|+.|..+++++.+    .++-+...|......--.+|+.+
T Consensus       388 elE~~~darilL~rAvec--cp~s~dLwlAl----arLetYenAkkvLNkaRe----~iptd~~IWitaa~LEE~ngn~~  457 (913)
T KOG0495|consen  388 ELEEPEDARILLERAVEC--CPQSMDLWLAL----ARLETYENAKKVLNKARE----IIPTDREIWITAAKLEEANGNVD  457 (913)
T ss_pred             hccChHHHHHHHHHHHHh--ccchHHHHHHH----HHHHHHHHHHHHHHHHHh----hCCCChhHHHHHHHHHHhcCCHH
Confidence            334455566666666543  44455555444    333445666777666655    34445566666665566667666


Q ss_pred             HHHHHHhhc----ccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 006010          210 NAIQLFREM----PVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT--PVTFNVLINGLCKNGELGRAAK  283 (664)
Q Consensus       210 ~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~  283 (664)
                      ...+++++.    ...|+..+...|..=...|-..|..-.+..+.......|+.-.  ..||..-...|.+.+.++-|..
T Consensus       458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA  537 (913)
T KOG0495|consen  458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA  537 (913)
T ss_pred             HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence            666666543    3445666666666666666666666666666666665554422  3466666666777777777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006010          284 LVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKF  363 (664)
Q Consensus       284 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  363 (664)
                      +|...++.- +-+...|......--..|..+.-..++++++.. ++-....|.....-+-..|+...|..++.++.+..+
T Consensus       538 Vya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p  615 (913)
T KOG0495|consen  538 VYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP  615 (913)
T ss_pred             HHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence            776665542 224455555555555566677777777777665 233455566666666666777777777777666654


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010          364 HVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSL  443 (664)
Q Consensus       364 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  443 (664)
                      . +...|-.-+.....+..++.|..+|.+....  .|+...|.--+....-.++.++|.+++++.++. ++.-...|..+
T Consensus       616 n-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lml  691 (913)
T KOG0495|consen  616 N-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLML  691 (913)
T ss_pred             C-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHH
Confidence            4 5666666666666777777777777766653  344555554444455556677777777776665 23344556666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCH
Q 006010          444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSV  523 (664)
Q Consensus       444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  523 (664)
                      ...+.+.++++.|.+.|..-.+. +|.....|-.+...--+.|.+-+|..+++...-.+ +-+...|...+.+-.+.|+.
T Consensus       692 GQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~  769 (913)
T KOG0495|consen  692 GQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNK  769 (913)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCH
Confidence            66666677777777666655443 24455566666666666667777777777666543 33456666777777777777


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhh
Q 006010          524 EEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFL  603 (664)
Q Consensus       524 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~  603 (664)
                      +.|..+..++++.-|+   +...|..-|...-+.++-..+.+.+++.     .-|+.....                   
T Consensus       770 ~~a~~lmakALQecp~---sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVlla-------------------  822 (913)
T KOG0495|consen  770 EQAELLMAKALQECPS---SGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLA-------------------  822 (913)
T ss_pred             HHHHHHHHHHHHhCCc---cchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHH-------------------
Confidence            7777777666532222   3445555555444444444444433332     223222222                   


Q ss_pred             HHHHHHhhhcCCcchHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccchHHHHHHH
Q 006010          604 NELAIRLFKRQRTSGGFKIVEVMLQKFLSPQ-TSTWERVVQELCRPKRIQAAINK  657 (664)
Q Consensus       604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~  657 (664)
                        ++..+.....++.|.+.|.+.++.  .|| -..|..+..-+.++|.-++-.++
T Consensus       823 --ia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev  873 (913)
T KOG0495|consen  823 --IAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEV  873 (913)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHH
Confidence              223367777888888888888874  343 37777777777888855444443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.82  E-value=9.1e-14  Score=134.02  Aligned_cols=516  Identities=11%  Similarity=0.050  Sum_probs=330.9

Q ss_pred             CCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHH--------------
Q 006010           97 GDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLN--------------  162 (664)
Q Consensus        97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--------------  162 (664)
                      ++...|+.++....+.++. .+..|..-++.--..|.+..|..+..+-.+.  ++.+...|.--++              
T Consensus       265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~--cprSeDvWLeaiRLhp~d~aK~vvA~A  341 (913)
T KOG0495|consen  265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE--CPRSEDVWLEAIRLHPPDVAKTVVANA  341 (913)
T ss_pred             HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh--CCchHHHHHHHHhcCChHHHHHHHHHH
Confidence            4567788888888877644 4556777776666777777777776665444  4444444433222              


Q ss_pred             ---------HHHHcC----CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHH
Q 006010          163 ---------VIIQEG----LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYT  229 (664)
Q Consensus       163 ---------~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  229 (664)
                               .+++.-    +...=..++++.++    .++.++..|.    +.....+.+.|+-++....+-- +.+...
T Consensus       342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe----~iP~sv~LWK----aAVelE~~~darilL~rAvecc-p~s~dL  412 (913)
T KOG0495|consen  342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALE----HIPRSVRLWK----AAVELEEPEDARILLERAVECC-PQSMDL  412 (913)
T ss_pred             HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHH----hCCchHHHHH----HHHhccChHHHHHHHHHHHHhc-cchHHH
Confidence                     111111    11222334444444    1333333443    3445566677888887776652 444444


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCHHHHHHHHH
Q 006010          230 YCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM----FLKGCLPNEVTYNTLIH  305 (664)
Q Consensus       230 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~g~~p~~~~~~~l~~  305 (664)
                      |.    +|.+...++.|.++++...+. ++.+...|.+-...--.+|+.+...+++++.    ...|+..+...|..=..
T Consensus       413 wl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe  487 (913)
T KOG0495|consen  413 WL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE  487 (913)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence            44    445566778888888888764 6667788887777777888888888777654    34577778888877777


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006010          306 GLCLKGNLDKAVSLLDRMVASKCMP--NEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKA  383 (664)
Q Consensus       306 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  383 (664)
                      .|-..|.+--+..+....+..|+..  -..||..-.+.|.+.+.++-+..+|....+--+. +...|......--..|..
T Consensus       488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~  566 (913)
T KOG0495|consen  488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTR  566 (913)
T ss_pred             HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcH
Confidence            7777888888888877777666443  2356777777788888888888888777765332 566777666666677777


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010          384 EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDM  463 (664)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  463 (664)
                      +....++++....- +-....|.....-+-..|+...|..++..+.+.. +.+...|.+-+..-....+++.|..+|.+.
T Consensus       567 Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llaka  644 (913)
T KOG0495|consen  567 ESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKA  644 (913)
T ss_pred             HHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            77777887777652 2244455555555666788888888887777764 446677777777777777888888888777


Q ss_pred             HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC
Q 006010          464 AKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP  542 (664)
Q Consensus       464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  542 (664)
                      ....  ++...|.--+...-..++.++|++++++.++.  -|+ ...|..+.+.+.+.++++.|...|..-++.-|+   
T Consensus       645 r~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~---  717 (913)
T KOG0495|consen  645 RSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN---  717 (913)
T ss_pred             hccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC---
Confidence            6644  66666666666666677778888888777764  344 456777777777777777777777766432222   


Q ss_pred             CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHH
Q 006010          543 DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFK  621 (664)
Q Consensus       543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  621 (664)
                      ....|-.+...--+.|.+-.|..++++..-.  .|+ ...|...++.                     -.+.|..+.|..
T Consensus       718 ~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~---------------------ElR~gn~~~a~~  774 (913)
T KOG0495|consen  718 SIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRM---------------------ELRAGNKEQAEL  774 (913)
T ss_pred             CchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHH---------------------HHHcCCHHHHHH
Confidence            3445666666666777777777777777652  333 3344444444                     444555555555


Q ss_pred             HHHHHHHc-----------------------------CCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          622 IVEVMLQK-----------------------------FLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       622 ~~~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      ++.++++.                             ...-|+.+...+...+....+++.|.++|.+.+
T Consensus       775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav  844 (913)
T KOG0495|consen  775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV  844 (913)
T ss_pred             HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444443                             023355556666666666666777776666543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=7.5e-14  Score=129.52  Aligned_cols=490  Identities=12%  Similarity=0.059  Sum_probs=360.0

Q ss_pred             CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 006010           81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV  160 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  160 (664)
                      .+...|....+--...+++..|+.+|++++..+ ..+...|...+.+-.++..+..|..+++..+..  .|.-...|...
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY  147 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY  147 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence            345566666677777888999999999999765 456778999999999999999999999998764  33334567777


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 006010          161 LNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE  240 (664)
Q Consensus       161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  240 (664)
                      +.+--..|+...|.++|+...+     ..|+...|++.+..-.+.+.++.|..+++...-.  .|++..|.-....=.+.
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~-----w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~  220 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWME-----WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH  220 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc
Confidence            7777778999999999999976     7899999999999999999999999999998766  58999999999999999


Q ss_pred             CChhHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHH
Q 006010          241 NRLDEAVLLLDEMQVD-G-CFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN--EVTYNTLIHGLCLKGNLDKA  316 (664)
Q Consensus       241 g~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a  316 (664)
                      |....|..+|+...+. | -.-+...+.+....-.++..++.|.-+|+-.+..= +.+  ...|......--+-|+....
T Consensus       221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gI  299 (677)
T KOG1915|consen  221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGI  299 (677)
T ss_pred             CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhh
Confidence            9999999999987653 1 01123455566666667788999999998887762 222  34455554444455654443


Q ss_pred             HHH--------HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHH--------HHHHh
Q 006010          317 VSL--------LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNE-YIYSTLI--------SGLFK  379 (664)
Q Consensus       317 ~~~--------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~--------~~~~~  379 (664)
                      .+.        |+.+++.+ +.|-.+|-..++.--..|+.+...++++.....-++... ..|...+        -.-..
T Consensus       300 Ed~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle  378 (677)
T KOG1915|consen  300 EDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELE  378 (677)
T ss_pred             HHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            332        34444443 567788888888888889999999999998876433221 1122111        12235


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006010          380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGL----CRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHK  455 (664)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  455 (664)
                      ..+++.+.++|+..++. ++....|+..+--.|    .+..++..|.+++..++.  ..|...+|...|..-.+.++++.
T Consensus       379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDR  455 (677)
T ss_pred             hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHH
Confidence            78899999999999884 444556665554443    567899999999999885  47888999999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010          456 AVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-KPDVVAYSSMIHGLCNAGSVEEALKLFNEML  534 (664)
Q Consensus       456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (664)
                      +..++++.+.-+ |.+..+|......-...|+.+.|..+|+-+++... ......|...|..-...|.++.|..+|++.+
T Consensus       456 cRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL  534 (677)
T KOG1915|consen  456 CRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL  534 (677)
T ss_pred             HHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence            999999999977 66778888888888889999999999999987531 1123466777777788999999999999996


Q ss_pred             hcCCCCCCCHhHHHHHHHHHH-----HcC-----------ChhHHHHHHHHHHHC--CCCCCHHHHHHHHHhhhh
Q 006010          535 CLEPKSQPDVFTYNILLNALC-----KQS-----------NISHSIDLLNSMMDR--GCDPDLVTCNIFLTALKE  591 (664)
Q Consensus       535 ~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~  591 (664)
                      ...+    ....|-.+...-.     +.+           +...|..+|+++...  ...| ...-..++.++.+
T Consensus       535 ~rt~----h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~-KeeR~~LLEaw~~  604 (677)
T KOG1915|consen  535 DRTQ----HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP-KEERLMLLEAWKN  604 (677)
T ss_pred             Hhcc----cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence            4333    2335555443322     233           456677888777642  1222 3334455555543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=5.8e-14  Score=130.23  Aligned_cols=449  Identities=11%  Similarity=0.110  Sum_probs=341.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCH-HHH
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNT-LTF  195 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~  195 (664)
                      +...|...+.--..++++..|..+|+..+..  ...+...|...+.+-.++.....|..+++.++.     +-|.+ ..|
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt-----~lPRVdqlW  144 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT-----ILPRVDQLW  144 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH-----hcchHHHHH
Confidence            4557777777778899999999999999764  567788999999999999999999999999987     33443 355


Q ss_pred             HHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006010          196 NLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN  275 (664)
Q Consensus       196 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  275 (664)
                      -..+.+--..|++..|.++|+.-.+.  .|+..+|++.++.=.+-+..+.|..+++...-  +.|++.+|-.....-.++
T Consensus       145 yKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~  220 (677)
T KOG1915|consen  145 YKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKH  220 (677)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhc
Confidence            55666666789999999999998876  89999999999999999999999999999886  469999999999999999


Q ss_pred             CChhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChhHH
Q 006010          276 GELGRAAKLVDNMFLK-GC-LPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPN--EVTYGTIINGLVKLGRAVDG  351 (664)
Q Consensus       276 g~~~~a~~~~~~~~~~-g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a  351 (664)
                      |....|..+|+...+. |- ..+...+.+....-..+..++.|.-+|+-.+++ ++.+  ...|..+...=-+.|+....
T Consensus       221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gI  299 (677)
T KOG1915|consen  221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGI  299 (677)
T ss_pred             CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhh
Confidence            9999999999998765 21 112233444444445678899999999998876 2323  33444444433344554333


Q ss_pred             HHH--------HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHH----H-H---HH
Q 006010          352 ARV--------LMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNT--VVYSALI----D-G---LC  413 (664)
Q Consensus       352 ~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li----~-~---~~  413 (664)
                      ...        ++.+...++ -|-.+|-..+..--..|+.+...++|++.... ++|-.  ..|...|    + +   -.
T Consensus       300 Ed~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEl  377 (677)
T KOG1915|consen  300 EDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEEL  377 (677)
T ss_pred             HHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            322        334444433 37778888888888889999999999999875 34421  1222221    1 1   13


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 006010          414 RVGKPDEAEEILFEMINNGCAANAFTYSSLMKG----FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR  489 (664)
Q Consensus       414 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  489 (664)
                      ...+.+.+.+++...++. +|...++|.-+--.    -.++.+...|.+++...+-.  .|-..+|...|..-.+.++++
T Consensus       378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efD  454 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFD  454 (677)
T ss_pred             HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHH
Confidence            568999999999999985 56666666655444    45778999999999887754  488889999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010          490 EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNS  569 (664)
Q Consensus       490 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  569 (664)
                      ....++++.++.+ +-+..+|......-...|+.+.|..+|+-++ ..|........|.+.|+.-...|.++.|..++++
T Consensus       455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi-~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYer  532 (677)
T KOG1915|consen  455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAI-SQPALDMPELLWKAYIDFEIEEGEFEKARALYER  532 (677)
T ss_pred             HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh-cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence            9999999999874 3456889888888889999999999999996 3444444566788888888899999999999999


Q ss_pred             HHHCCCCCCHHHHHHHH
Q 006010          570 MMDRGCDPDLVTCNIFL  586 (664)
Q Consensus       570 ~~~~~~~p~~~~~~~ll  586 (664)
                      +++.  .+....|..+.
T Consensus       533 lL~r--t~h~kvWisFA  547 (677)
T KOG1915|consen  533 LLDR--TQHVKVWISFA  547 (677)
T ss_pred             HHHh--cccchHHHhHH
Confidence            9974  33333444443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=3.5e-14  Score=130.01  Aligned_cols=464  Identities=14%  Similarity=0.162  Sum_probs=312.8

Q ss_pred             CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHH--hcCChh-HHHHHHhhcccCCCCCCHHH
Q 006010          153 TVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVC--RLGLVD-NAIQLFREMPVRNCEPDIYT  229 (664)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~~~-~A~~~~~~~~~~~~~~~~~~  229 (664)
                      .+.+-|.+++. +..|...++.-+|+.|..   .|++.+...-..+...-+  ...+.- .-++.|-.|...| ..+..+
T Consensus       115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~---e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~s  189 (625)
T KOG4422|consen  115 QVETENNLLKM-ISSREVKDSCILYERMRS---ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSS  189 (625)
T ss_pred             hhcchhHHHHH-HhhcccchhHHHHHHHHh---cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccc
Confidence            45566777664 456888999999999988   566555555444444333  333332 2245666666665 333333


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010          230 YCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL  309 (664)
Q Consensus       230 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  309 (664)
                      |        +.|+..+  -+|+..     +.+..+|..+|.++|+--..++|.+++++......+.+..+||.+|.+-.-
T Consensus       190 W--------K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~  254 (625)
T KOG4422|consen  190 W--------KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY  254 (625)
T ss_pred             c--------ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh
Confidence            3        3344332  333333     347789999999999999999999999998877777788999999886553


Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 006010          310 KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDG----ARVLMSMEERKFHVNEYIYSTLISGLFKEGKAED  385 (664)
Q Consensus       310 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  385 (664)
                      ..    ..+++.+|....+.||..|+|+++.+..+.|+++.|    .+++.+|.+.|+.|...+|..++..+++.++..+
T Consensus       255 ~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k  330 (625)
T KOG4422|consen  255 SV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK  330 (625)
T ss_pred             hc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence            32    378889999988999999999999999999987755    4677788889999999999999999988887644


Q ss_pred             -HHHHHHHHHH----cCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHh
Q 006010          386 -AMKLWKQMME----KGCK----PNTVVYSALIDGLCRVGKPDEAEEILFEMINNG----CAAN---AFTYSSLMKGFFE  449 (664)
Q Consensus       386 -a~~~~~~~~~----~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~  449 (664)
                       +..++.++..    +..+    .|...|...+..|.+..+.+.|..+..-+....    +.++   ..-|..+....+.
T Consensus       331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq  410 (625)
T KOG4422|consen  331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ  410 (625)
T ss_pred             hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence             5555555543    1122    244566777888888888888888876655421    2333   2345667777788


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC-C---H--
Q 006010          450 SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG-S---V--  523 (664)
Q Consensus       450 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~---~--  523 (664)
                      ....+.-...|+.|...-.-|+..+...++++....|.++-..++|.+++..|..-+......++..+++.. .   .  
T Consensus       411 ~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r  490 (625)
T KOG4422|consen  411 MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPER  490 (625)
T ss_pred             HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHH
Confidence            888888899999998877778888888889998899999999999999888775544444444444444433 1   1  


Q ss_pred             ---H-----HHHHHHHHh---hhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHhhhh
Q 006010          524 ---E-----EALKLFNEM---LCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG-CDPDLVTCNIFLTALKE  591 (664)
Q Consensus       524 ---~-----~A~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~~~~  591 (664)
                         .     -|..+++..   ........-.....+...-.+.+.|+.++|.+++.-+.+.+ --|-....+.++.    
T Consensus       491 ~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E----  566 (625)
T KOG4422|consen  491 EQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE----  566 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH----
Confidence               0     111122111   00011223344566777777889999999999999886543 2233333333222    


Q ss_pred             hccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHH
Q 006010          592 KLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKC  658 (664)
Q Consensus       592 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  658 (664)
                                    +.+.-........|...++-|...+.+.-...-..+.+.+.-+..-.+|++-+
T Consensus       567 --------------l~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~l  619 (625)
T KOG4422|consen  567 --------------LMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSNL  619 (625)
T ss_pred             --------------HHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhhh
Confidence                          22226677788889999999877654444446666777777777777777654

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=2.9e-14  Score=130.49  Aligned_cols=445  Identities=17%  Similarity=0.193  Sum_probs=294.8

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHH--HHhcCCHHHH-HHHHHHhhhcCCCCCCHHHHHHH
Q 006010           84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKA--YGKAHLVEEA-IRLFHTMVDEFHCKRTVKSFNSV  160 (664)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~l  160 (664)
                      ++=+++++ ....|....+--+|++|.+.|.+.++.....+++.  |....++--| .+.|-.|. .++ ..+..+|   
T Consensus       117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~-~~~-E~S~~sW---  190 (625)
T KOG4422|consen  117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMR-NFG-EDSTSSW---  190 (625)
T ss_pred             cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcc-ccc-ccccccc---
Confidence            34445554 45678899999999999999998888776655433  3333332222 23444442 222 3344455   


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 006010          161 LNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE  240 (664)
Q Consensus       161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  240 (664)
                           +.|...+  -+|+...+        +..++..+|.++|+--..++|.+++++......+.+..+||.+|.+-.-.
T Consensus       191 -----K~G~vAd--L~~E~~PK--------T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~  255 (625)
T KOG4422|consen  191 -----KSGAVAD--LLFETLPK--------TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS  255 (625)
T ss_pred             -----ccccHHH--HHHhhcCC--------CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence                 3454433  33443332        66789999999999999999999999998877788999999998765433


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-
Q 006010          241 NRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGR----AAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDK-  315 (664)
Q Consensus       241 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~-  315 (664)
                      .    ..+++.+|....+.||..|+|+++.+..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.++..+ 
T Consensus       256 ~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~  331 (625)
T KOG4422|consen  256 V----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV  331 (625)
T ss_pred             c----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence            2    27788999999999999999999999999998765    56778889999999999999999999998887644 


Q ss_pred             HHHHHHHHHHC----CCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhc
Q 006010          316 AVSLLDRMVAS----KCMP----NEVTYGTIINGLVKLGRAVDGARVLMSMEERK----FHVN---EYIYSTLISGLFKE  380 (664)
Q Consensus       316 a~~~~~~~~~~----~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~  380 (664)
                      +..++.++...    .++|    |...|...+..|....+.+-|.++..-+....    +.++   ..-|..+....|+.
T Consensus       332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~  411 (625)
T KOG4422|consen  332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM  411 (625)
T ss_pred             hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence            45555555432    2222    44556677777888888888887766554321    1121   23455667777888


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006010          381 GKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIW  460 (664)
Q Consensus       381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  460 (664)
                      ...+.....|+.|.-.-.-|+..+...++++..-.+.++-..+++.+++..|...+...                -++++
T Consensus       412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil  475 (625)
T KOG4422|consen  412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEIL  475 (625)
T ss_pred             HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHH
Confidence            88888888888888776778888888888888888888888888888776652221111                12333


Q ss_pred             HHHHHCCCCCCHH---HHHHHHHHHHcCCChHHHHH-HHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhc
Q 006010          461 KDMAKNNCVYNEV---CYSVLIHGLCEDGKLREARM-VWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCL  536 (664)
Q Consensus       461 ~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (664)
                      ..+......|+..   -+.....-++.  ++.++.+ .-.++.+...  .....+..+-.+.+.|+.++|.+++.-+++.
T Consensus       476 ~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~  551 (625)
T KOG4422|consen  476 MLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRK  551 (625)
T ss_pred             HHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence            3333333223222   22222221111  2222222 2223443333  3446777777889999999999999988532


Q ss_pred             CCCCCCCHhHHH---HHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010          537 EPKSQPDVFTYN---ILLNALCKQSNISHSIDLLNSMMDRG  574 (664)
Q Consensus       537 ~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~  574 (664)
                      . +..|-....|   -+++.-.+.++..+|..+++-|...+
T Consensus       552 ~-~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  552 H-NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             C-CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            2 2223333344   55666678889999999999997653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=4.8e-13  Score=127.35  Aligned_cols=490  Identities=12%  Similarity=0.043  Sum_probs=325.0

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL  161 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  161 (664)
                      +.+-+..+++-+..+.++..|.-+-+.....+  .++.-...+++++.-.|.++.|..+...-.-   ...+........
T Consensus        15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~   89 (611)
T KOG1173|consen   15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAA   89 (611)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHH
Confidence            44556666666777777888887777777655  3445566778888888888888877765421   356777777778


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcc----------cCCCCcCHH-----------HHHHHHHHHHhcCChhHHHHHHhhccc
Q 006010          162 NVIIQEGLYHRALEFYNHIVNAK----------HMNILPNTL-----------TFNLVIKTVCRLGLVDNAIQLFREMPV  220 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~----------~~~~~~~~~-----------~~~~ll~~~~~~g~~~~A~~~~~~~~~  220 (664)
                      .++.+..++++|..++.......          ..-+.+|..           .+-.-...|....+.++|...|.+...
T Consensus        90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~  169 (611)
T KOG1173|consen   90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL  169 (611)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence            88888888888888877221000          000111110           111112234445566677777766654


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006010          221 RNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGC----FPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN  296 (664)
Q Consensus       221 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~  296 (664)
                      .    |...|..+...-..  ..-.+.+.|+.+.....    .-+......+.....-...-+.....-++..-.+..-+
T Consensus       170 ~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~  243 (611)
T KOG1173|consen  170 A----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAEN  243 (611)
T ss_pred             c----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhc
Confidence            3    44444333222111  01112122222221100    01222222222211000000111111111111123445


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006010          297 EVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISG  376 (664)
Q Consensus       297 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  376 (664)
                      ......-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.-+. ...+|-++.--
T Consensus       244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~Y  321 (611)
T KOG1173|consen  244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCY  321 (611)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHH
Confidence            5566666777778899999999999998874 566667777777888899888877777777776443 77889999988


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006010          377 LFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKA  456 (664)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  456 (664)
                      |.-.|+..+|.+.|.+....+.. =...|-.+...|.-.|..|+|...+..+.+.- +-....+..+.--|.+.++.+-|
T Consensus       322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence            88899999999999988765322 34578888899999999999999998887751 22333344455568888999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCc----CHHhHHHHHHHHHHcCCHHHHHHHH
Q 006010          457 VEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR--GCKP----DVVAYSSMIHGLCNAGSVEEALKLF  530 (664)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~  530 (664)
                      .+.|....... |.|+...+.+.-.....+.+.+|..+|+..+..  .+.+    -..+++.|+.+|.+.+.+++|+..+
T Consensus       400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence            99999988765 677888888888888889999999999887732  0111    2356889999999999999999999


Q ss_pred             HHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhh
Q 006010          531 NEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEK  592 (664)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~  592 (664)
                      ++++...+.   +..++.++.-.|...|+++.|++.|.+.+.  +.|+..+...+++.+-+.
T Consensus       479 q~aL~l~~k---~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  479 QKALLLSPK---DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHcCCC---chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence            999866555   888999999999999999999999999986  899998888888775443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.72  E-value=2e-11  Score=118.02  Aligned_cols=520  Identities=11%  Similarity=0.101  Sum_probs=304.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHH
Q 006010          119 KSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLV  198 (664)
Q Consensus       119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  198 (664)
                      ..|........++|+...-...|+..+...+.......|...+...-..+-++-+..+|++.++     +.|.  .-+-.
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk-----~~P~--~~eey  175 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK-----VAPE--AREEY  175 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh-----cCHH--HHHHH
Confidence            3677777777888888888888888877655555566788888888888888888888888877     3343  35667


Q ss_pred             HHHHHhcCChhHHHHHHhhcccC------CCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCH--HHHHH
Q 006010          199 IKTVCRLGLVDNAIQLFREMPVR------NCEPDIYTYCTLMDGLCKENRLD---EAVLLLDEMQVDGCFPTP--VTFNV  267 (664)
Q Consensus       199 l~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~--~~~~~  267 (664)
                      +..+++.+++++|.+.+...+..      ..+.+...|..+.+...++-+.-   ....++..+...  -+|.  ..|..
T Consensus       176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S  253 (835)
T KOG2047|consen  176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS  253 (835)
T ss_pred             HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence            77888888888888888776532      11344555666666665543332   233334443332  2333  46778


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------------cC------ChHHHHHHHHHHHH
Q 006010          268 LINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL----------------KG------NLDKAVSLLDRMVA  325 (664)
Q Consensus       268 li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----------------~g------~~~~a~~~~~~~~~  325 (664)
                      |.+.|.+.|.+++|.++|++....  ...+.-|+.+.++|+.                .|      +++-.+.-|+.+.+
T Consensus       254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~  331 (835)
T KOG2047|consen  254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN  331 (835)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence            888888888888888888876654  1223333333333321                11      12223333444433


Q ss_pred             CCC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CC----CCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          326 SKC-----------MPNEVTYGTIINGLVKLGRAVDGARVLMSMEER-KF----HVNEYIYSTLISGLFKEGKAEDAMKL  389 (664)
Q Consensus       326 ~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~a~~~  389 (664)
                      .+.           +.++..|..-..  +..|+..+-...+.+.... ++    -.-...|..+...|-..|+.+.|..+
T Consensus       332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi  409 (835)
T KOG2047|consen  332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI  409 (835)
T ss_pred             ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence            210           112222222222  1234555556666665543 11    11234566777777777888888888


Q ss_pred             HHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHHh
Q 006010          390 WKQMMEKGCKPN---TVVYSALIDGLCRVGKPDEAEEILFEMINNGCA-----------------ANAFTYSSLMKGFFE  449 (664)
Q Consensus       390 ~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~  449 (664)
                      |++..+-..+--   ..+|......-.+..+++.|.++.+.+....-.                 .+...|+..++.-..
T Consensus       410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs  489 (835)
T KOG2047|consen  410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES  489 (835)
T ss_pred             HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence            877766433211   345666666666777777777777766532111                 123455666666666


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH-HhHHHHHHHHHH---cCCHHH
Q 006010          450 SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV-VAYSSMIHGLCN---AGSVEE  525 (664)
Q Consensus       450 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~  525 (664)
                      .|-++....+++++.+..+. ++.........+-.+.-++++.+++++-+..-..|+. ..|+..+.-+.+   ....+.
T Consensus       490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr  568 (835)
T KOG2047|consen  490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER  568 (835)
T ss_pred             hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence            77777777778777776532 2222222223344555677777777766655334443 456555544432   234777


Q ss_pred             HHHHHHHhhhcCCCCCCCHh--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHhhhhhcc-------
Q 006010          526 ALKLFNEMLCLEPKSQPDVF--TYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL--VTCNIFLTALKEKLE-------  594 (664)
Q Consensus       526 A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~-------  594 (664)
                      |..+|++++.   +-+|...  .|-.....--+.|-...|+.+++++... +.+..  ..|+..+....+.-.       
T Consensus       569 aRdLFEqaL~---~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~i  644 (835)
T KOG2047|consen  569 ARDLFEQALD---GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREI  644 (835)
T ss_pred             HHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence            7777777743   2223322  2222222223456677777777776542 33332  345555544333211       


Q ss_pred             --------CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc-CCCCChHHHHHHHHHhcccchHHHHHH
Q 006010          595 --------APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK-FLSPQTSTWERVVQELCRPKRIQAAIN  656 (664)
Q Consensus       595 --------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~  656 (664)
                              +.++++++.-..+..-++.|..+.|..++.-..+. ..+.+...|..--.--.++|+-+--.+
T Consensus       645 YekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ke  715 (835)
T KOG2047|consen  645 YEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKE  715 (835)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence                    13344566666777788999999999999988775 333467889988888889998444433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.8e-12  Score=119.14  Aligned_cols=257  Identities=10%  Similarity=0.031  Sum_probs=135.4

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCh
Q 006010          306 GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFH--VNEYIYSTLISGLFKEGKA  383 (664)
Q Consensus       306 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~  383 (664)
                      ++....+.+++.+-.+.....|++-+...-+....+.-...++++|+.+|+++.+..+-  .|..+|+.++-.  ++.+.
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s  313 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence            44444455555555555555555544444444444455556666666666666655321  134444444322  22111


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010          384 EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDM  463 (664)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  463 (664)
                      .  +..+-+-.-.--+-.+.|...+.+.|.-.++.++|..+|+.+++.+ +.....|+.+.+-|....+...|++.++.+
T Consensus       314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence            1  1111111100001233455555555666666666666666666654 334455566666666666666666666666


Q ss_pred             HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC
Q 006010          464 AKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD  543 (664)
Q Consensus       464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  543 (664)
                      .+.+ |.|...|-.+.++|.-.+.+.-|+-.|++..... +-|...|.+|+.+|.+.++.++|++.|.+++  ..+ ..+
T Consensus       391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai--~~~-dte  465 (559)
T KOG1155|consen  391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAI--LLG-DTE  465 (559)
T ss_pred             HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHH--hcc-ccc
Confidence            6554 4555566666666666666666666666665542 2245566666666666666666666666653  221 113


Q ss_pred             HhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          544 VFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       544 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      ...+..+...|-+.++.++|...|++-++
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34555666666666666666666655553

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=3.7e-12  Score=114.08  Aligned_cols=459  Identities=13%  Similarity=0.118  Sum_probs=294.7

Q ss_pred             HHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010           90 IQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL  169 (664)
Q Consensus        90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (664)
                      +.-+...+++.-|+.+++.....+.+....+-.+++.++...|++++|+..|..+...  ..++...+-.+.-++.-.|.
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~  106 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQ  106 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHH
Confidence            4455667889999999888876665544566778889999999999999999988654  55667777777777778899


Q ss_pred             HhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010          170 YHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLL  249 (664)
Q Consensus       170 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  249 (664)
                      +.+|..+-++..+        +...-..++....+.|+-++-..+.+.+...     .+.-.+|.......-.+.+|+++
T Consensus       107 Y~eA~~~~~ka~k--------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdv  173 (557)
T KOG3785|consen  107 YIEAKSIAEKAPK--------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDV  173 (557)
T ss_pred             HHHHHHHHhhCCC--------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHH
Confidence            9999998877644        4445556666677788877777776665432     23344555555555678999999


Q ss_pred             HHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006010          250 LDEMQVDGCFPTPVTFNVL-INGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKC  328 (664)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  328 (664)
                      +..+...+  |.-...|.- .-+|.+..-++-+.++++-.... .+.+....|.......+.-+-..|.+-.+.+.+.+-
T Consensus       174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~  250 (557)
T KOG3785|consen  174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID  250 (557)
T ss_pred             HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence            99998763  454455543 34567788888888888887665 333445556555554443333344444555554431


Q ss_pred             CCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 006010          329 MPNEVTYGTIINGLVK-----LGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTV  403 (664)
Q Consensus       329 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  403 (664)
                      ..    | -.+.-.++     ...-+.|++++-.+.+.-    ...-..++-.|.+++++++|..+.+++.-  ..|-..
T Consensus       251 ~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Ey  319 (557)
T KOG3785|consen  251 QE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEY  319 (557)
T ss_pred             cc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHH
Confidence            11    1 12222333     245677888877766541    22334466678899999999998877642  122222


Q ss_pred             HHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 006010          404 VYSALIDGLCRVG-------KPDEAEEILFEMINNGCAANA-FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCY  475 (664)
Q Consensus       404 ~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  475 (664)
                      ....+.  +...|       ...-|...|.-.-..+..-|. .--..+...+.-..++++++..+..+..--...|...+
T Consensus       320 ilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~  397 (557)
T KOG3785|consen  320 ILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL  397 (557)
T ss_pred             HHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence            222222  22333       344455555444333322222 22234555566667888888888887765544455555


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhH-HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHH-HHHHHH
Q 006010          476 SVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY-SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTY-NILLNA  553 (664)
Q Consensus       476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~l~~~  553 (664)
                      | +..+++..|++.+|.++|-.+....++ |..+| ..+..+|.+++.++-|..++-++  ..++   +..+. ..+..-
T Consensus       398 N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~---e~fsLLqlIAn~  470 (557)
T KOG3785|consen  398 N-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPS---ERFSLLQLIAND  470 (557)
T ss_pred             H-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCch---hHHHHHHHHHHH
Confidence            5 678888999999999999877654443 44455 45667888999999998888665  2222   33333 344467


Q ss_pred             HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          554 LCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       554 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      |.+.+.+--|.+.|+.+..  ..|++..|..--++
T Consensus       471 CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGA  503 (557)
T KOG3785|consen  471 CYKANEFYYAAKAFDELEI--LDPTPENWEGKRGA  503 (557)
T ss_pred             HHHHHHHHHHHHhhhHHHc--cCCCccccCCccch
Confidence            8888888888888887776  56776665433333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=5.1e-12  Score=117.43  Aligned_cols=369  Identities=11%  Similarity=0.057  Sum_probs=241.5

Q ss_pred             CCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-
Q 006010          187 NILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTF-  265 (664)
Q Consensus       187 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-  265 (664)
                      +...|...+-.....+.+.|..+.|+..|......  .  +..|.+.+....-..+.+.+..+    .. |.+.+.... 
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~--P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~  229 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--Y--PWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMK  229 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--C--CcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHH
Confidence            34446555555566677788888888888877654  2  23333333332222232322222    11 111121111 


Q ss_pred             -HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHH
Q 006010          266 -NVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKC--MPNEVTYGTIINGL  342 (664)
Q Consensus       266 -~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~  342 (664)
                       -.+..++....+.+++.+-.+.....|..-+...-+....+.....++++|+.+|+++.+...  .-|..+|..++  |
T Consensus       230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Y  307 (559)
T KOG1155|consen  230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--Y  307 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--H
Confidence             123345556667778888777777777765655555555666678888899999988887631  11455666555  3


Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006010          343 VKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAE  422 (664)
Q Consensus       343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  422 (664)
                      ++..+-.  +..+.+-.-.--+-...|...+.+-|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|.
T Consensus       308 v~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi  384 (559)
T KOG1155|consen  308 VKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI  384 (559)
T ss_pred             HHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence            3332211  112222111111113346667777788888889999999988887543 5667888888888888999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 006010          423 EILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG  502 (664)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  502 (664)
                      +-++.+++.+ |.|-..|-.|.++|.-.+...=|+-.|++..... |.|...|.+|..+|.+.++.++|++.|......|
T Consensus       385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            9999988875 6788888889999988888888888888888765 6778889999999999999999999999888765


Q ss_pred             CCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcC--CCCCCCHh--HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          503 CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLE--PKSQPDVF--TYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       503 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                       ..+...+..++..|-+.++.++|...|++.+...  .|...+..  .---|..-+.+.+++++|.........
T Consensus       463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence             3456788889999999999999998888875421  22222211  111233456677888888776666554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=3.6e-13  Score=125.73  Aligned_cols=419  Identities=12%  Similarity=0.076  Sum_probs=255.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCH-HHHHHHHH
Q 006010          123 FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNT-LTFNLVIK  200 (664)
Q Consensus       123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~ll~  200 (664)
                      ....-+.++|.+++|++.|.+.++   +.|+ +..|.....+|...|+++++.+.-.+.++     +.|+- ..+..-..
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE-----l~P~Y~KAl~RRA~  191 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE-----LNPDYVKALLRRAS  191 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh-----cCcHHHHHHHHHHH
Confidence            445557788889999999988876   3455 77888888888888999888888888876     55653 36666667


Q ss_pred             HHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CC--CCCCHHHHHHHHHHHHhcCC
Q 006010          201 TVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQV-DG--CFPTPVTFNVLINGLCKNGE  277 (664)
Q Consensus       201 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~~~li~~~~~~g~  277 (664)
                      ++-..|++++|+.-..-.--.+--.+..+--.+=+.+-+     .|....++-.+ .+  +-|+.....+....+...-.
T Consensus       192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~  266 (606)
T KOG0547|consen  192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK  266 (606)
T ss_pred             HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence            777778887775433222111101111111111111111     12222222222 22  23444433333332211000


Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCC---CC---CC------hhhHHHHHHHHHh
Q 006010          278 LGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL-KGNLDKAVSLLDRMVASK---CM---PN------EVTYGTIINGLVK  344 (664)
Q Consensus       278 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~---~~---~~------~~~~~~ll~~~~~  344 (664)
                              ..+...+.+.|...-..+-..+.. ...+..|.+.+.+-....   ..   .|      ..+.......+.-
T Consensus       267 --------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL  338 (606)
T KOG0547|consen  267 --------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL  338 (606)
T ss_pred             --------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence                    000000000010000000000000 012223333222211100   00   01      1112222223445


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010          345 LGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEI  424 (664)
Q Consensus       345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  424 (664)
                      .|+.-.+..-|+........++. .|-.+...|.+..+.++....|++....+.. ++.+|..-.+...-.+++++|..-
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence            68888888888888887655333 3666777888899999999999988877544 666777777777778899999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 006010          425 LFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCK  504 (664)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  504 (664)
                      |++.+... +.+...|..+..+..+.+.+++++..|++.++.- |..+..|+.....+...+++++|.+.|+..++.  .
T Consensus       417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E  492 (606)
T KOG0547|consen  417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--E  492 (606)
T ss_pred             HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--c
Confidence            99998875 5567777778778888889999999999988764 667788999999999999999999999988874  3


Q ss_pred             cC-------HH--hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          505 PD-------VV--AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       505 p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      |+       ..  +--.++. +.-.+++.+|+.+++++++.+|.   ....|..|...-.+.|+.++|+++|++...
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk---ce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK---CEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33       11  1111221 11338899999999999765554   556788888889999999999999998774

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=2.5e-12  Score=122.60  Aligned_cols=497  Identities=11%  Similarity=0.068  Sum_probs=319.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHH
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFN  196 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  196 (664)
                      +..-+..+.+-+..+.++.-|+-+-+++..   ...++...-.+++++.-.|++++|..+...-.-     ...|..+..
T Consensus        15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~---l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l-----e~~d~~cry   86 (611)
T KOG1173|consen   15 SLEKYRRLVRDALMQHRYKTALFWADKVAG---LTNDPADIYWLAQVLYLGRQYERAAHLITTYKL-----EKRDIACRY   86 (611)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhh-----hhhhHHHHH
Confidence            444566677777788889999988888744   334555556688888888999998887766533     234777888


Q ss_pred             HHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006010          197 LVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNG  276 (664)
Q Consensus       197 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  276 (664)
                      .....+.+..++++|..++.....   .-+...|-.--.  ...-..+.+.    ++..  +......+-.-...|....
T Consensus        87 L~~~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~  155 (611)
T KOG1173|consen   87 LAAKCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALD  155 (611)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhc
Confidence            888899999999999999874411   111111110000  0000111111    1100  0111111111223455556


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChhHHH
Q 006010          277 ELGRAAKLVDNMFLKGCLPNEVTYNTL---IHGLCLKGNLDKAVSLLDRMVAS-KCMPNEVTYGTIINGLVKLGRAVDGA  352 (664)
Q Consensus       277 ~~~~a~~~~~~~~~~g~~p~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~  352 (664)
                      +.++|...|.+....    |...+..+   +.+..-.  .++-..++..+.-. -...+......+.........-+...
T Consensus       156 n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~  229 (611)
T KOG1173|consen  156 NREEARDKYKEALLA----DAKCFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESL  229 (611)
T ss_pred             cHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccc
Confidence            677777777776654    44333333   2222111  11122222211000 00112222222222111011111111


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006010          353 RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG  432 (664)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  432 (664)
                      ..-.+..-.+..-+......-.+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.-
T Consensus       230 ~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y  308 (611)
T KOG1173|consen  230 TRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY  308 (611)
T ss_pred             ccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC
Confidence            111111111233356666677777888999999999999998874 3455566666778888999888888878888763


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH
Q 006010          433 CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS  512 (664)
Q Consensus       433 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  512 (664)
                       |..+.+|-++...|...|+..+|.+.|.+....+ +.=...|-.....|+-.|..++|+..+..+-+. ++-...-+..
T Consensus       309 -P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LY  385 (611)
T KOG1173|consen  309 -PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLY  385 (611)
T ss_pred             -CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHH
Confidence             7778899999999999999999999999987755 333457899999999999999999999877654 1222223344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHhhh
Q 006010          513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDR--GCDPDLVTCNIFLTALK  590 (664)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~  590 (664)
                      +.--|.+.++.+-|.++|.+++.+.|.   |+..++-+.-.....+.+.+|..+|+..+..  .+.+...+|..++    
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~---Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~----  458 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPS---DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTL----  458 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCC---cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHH----
Confidence            555678899999999999999765554   6777888887778889999999999998832  1122222333333    


Q ss_pred             hhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 006010          591 EKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNLY  663 (664)
Q Consensus       591 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  663 (664)
                                   ..||.++.+.+++++|+..+++.+.. .+.+..++..++-.+...|+++.|++.|.++|.
T Consensus       459 -------------~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  459 -------------NNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             -------------HhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence                         34677799999999999999999986 466889999999999999999999999998873

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.1e-12  Score=122.51  Aligned_cols=420  Identities=13%  Similarity=0.120  Sum_probs=265.9

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCC-HHHHHHH
Q 006010          156 SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPD-IYTYCTL  233 (664)
Q Consensus       156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l  233 (664)
                      .+-..++-+.++|++++|+++|.+.++     ..|+ ...|.....+|...|+++++.+.-...++.+  |+ +..+..-
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~-----l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RR  189 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIE-----LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRR  189 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHh-----cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHH
Confidence            345566778889999999999999987     5577 6788888999999999999999888888763  44 4466667


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-c--CCCCCHHHHHHHHHHHHhc
Q 006010          234 MDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFL-K--GCLPNEVTYNTLIHGLCLK  310 (664)
Q Consensus       234 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~--g~~p~~~~~~~l~~~~~~~  310 (664)
                      ..++-..|++++|+.-..-..-.+.-.+..+--.+=+.+-     ..|....++-.. .  .+.|+.....+....+...
T Consensus       190 A~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~  264 (606)
T KOG0547|consen  190 ASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD  264 (606)
T ss_pred             HHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence            7777888888887653332221111111111111111111     111222222112 1  1234444333333332210


Q ss_pred             ------CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHH---cCCC---CC------HHHHH
Q 006010          311 ------GNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVK-LGRAVDGARVLMSMEE---RKFH---VN------EYIYS  371 (664)
Q Consensus       311 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~---~~~~---~~------~~~~~  371 (664)
                            ...+++-..+....+              ..+.. ...+..+...+.+-..   ....   .|      ..+..
T Consensus       265 ~~~~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~  330 (606)
T KOG0547|consen  265 PKPLFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL  330 (606)
T ss_pred             ccccccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence                  000111111111100              00000 0012222222211110   0000   01      11222


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006010          372 TLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESG  451 (664)
Q Consensus       372 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  451 (664)
                      .-...+.-.|+.-.|..-|+..+.....++. .|-.+...|....+.++....|.++.+.+ +.++.+|..-...+.-.+
T Consensus       331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~  408 (606)
T KOG0547|consen  331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ  408 (606)
T ss_pred             HhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence            2222344578889999999999887554333 26667778999999999999999999886 667888888888888899


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHH
Q 006010          452 KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFN  531 (664)
Q Consensus       452 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  531 (664)
                      ++++|..=|++.+... |.+...|..+..+..+.++++++...|++.+.. ++-.+..|+.....+...++++.|.+.|+
T Consensus       409 q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD  486 (606)
T KOG0547|consen  409 QYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD  486 (606)
T ss_pred             HHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence            9999999999999876 566778888888888999999999999999986 44457899999999999999999999999


Q ss_pred             HhhhcCCCCC---CCHh--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhhHH
Q 006010          532 EMLCLEPKSQ---PDVF--TYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFLNE  605 (664)
Q Consensus       532 ~~~~~~~~~~---~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~  605 (664)
                      .++.+++...   .+..  ....++-.- -.+++.+|..++.++.+  +.|.... +..+..                  
T Consensus       487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq------------------  545 (606)
T KOG0547|consen  487 KAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQ------------------  545 (606)
T ss_pred             HHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHH------------------
Confidence            9977665411   1111  122222221 24899999999999997  6665443 333333                  


Q ss_pred             HHHHhhhcCCcchHHHHHHHHHHc
Q 006010          606 LAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       606 l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                         +..++|+.++|+++|++....
T Consensus       546 ---~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  546 ---FELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             ---HHHHHhhHHHHHHHHHHHHHH
Confidence               388999999999999998753

>TIGR00540 hemY_coli hemY protein

Probab=99.65  E-value=4.3e-13  Score=134.26  Aligned_cols=298  Identities=11%  Similarity=0.029  Sum_probs=147.8

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006010          309 LKGNLDKAVSLLDRMVASKCMPNEV-TYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAM  387 (664)
Q Consensus       309 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  387 (664)
                      ..|+++.|.+.+.+..+.  .|++. .+..........|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            355666666665555443  22222 222233444455555555555555544322211122222344444555555555


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010          388 KLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN  467 (664)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  467 (664)
                      ..++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+.. +...+..+-.                      
T Consensus       174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~----------------------  229 (409)
T TIGR00540       174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ----------------------  229 (409)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH----------------------
Confidence            555555544322 3344444555555555555555555555544311 1111110000                      


Q ss_pred             CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC---CCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH
Q 006010          468 CVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG---CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV  544 (664)
Q Consensus       468 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  544 (664)
                               .........+..+++.+.+..+.+..   .+.+...+..++..+...|+.++|.+++++.++..++.. +.
T Consensus       230 ---------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~-~~  299 (409)
T TIGR00540       230 ---------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR-AI  299 (409)
T ss_pred             ---------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc-cc
Confidence                     00011111122222222333333221   112566677777777788888888888887754333211 00


Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHH
Q 006010          545 FTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVE  624 (664)
Q Consensus       545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  624 (664)
                      .............++.+.+.+.+++..+  ..|+... .                 .++++++|++.+.|+|++|.++|+
T Consensus       300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~-~-----------------~ll~sLg~l~~~~~~~~~A~~~le  359 (409)
T TIGR00540       300 SLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPK-C-----------------CINRALGQLLMKHGEFIEAADAFK  359 (409)
T ss_pred             hhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChh-H-----------------HHHHHHHHHHHHcccHHHHHHHHH
Confidence            0011111222334666777777777665  4555542 1                 112234556888888888888888


Q ss_pred             HHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          625 VMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       625 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      +.......|++..+.+++..+.+.|+.++|.+++++.|
T Consensus       360 ~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       360 NVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            43332247788777888888888888888888777654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.65  E-value=1.1e-12  Score=130.45  Aligned_cols=283  Identities=14%  Similarity=0.119  Sum_probs=131.1

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHhcCChhHHH
Q 006010          275 NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYG--TIINGLVKLGRAVDGA  352 (664)
Q Consensus       275 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~  352 (664)
                      .|+++.|++.+.........| ...|.....+....|+++.|.+.+.++.+.  .|+.....  .....+...|++++|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            467777776666544432111 222323333445667777777777666654  33332222  2244556666666666


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCChhHHHHHH
Q 006010          353 RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTV-------VYSALIDGLCRVGKPDEAEEIL  425 (664)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~  425 (664)
                      ..++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++..       +|..++.......+.+...+++
T Consensus       174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            666666665433 45556666666666666666666666666554332111       1111122122222223333333


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc
Q 006010          426 FEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP  505 (664)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  505 (664)
                      +...+. .+.++.....+...+...|+.++|.+++++..+.  +++....  ++.+....++.+++++..+...+.. +-
T Consensus       253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~  326 (398)
T PRK10747        253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD  326 (398)
T ss_pred             HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence            332221 1234444444555555555555555555444442  2232111  1122223344555555554444431 11


Q ss_pred             CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          506 DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      |...+..+...+.+.|++++|.+.|+.+++    ..|+...+..+...+.+.|+.++|.+++++..
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~----~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK----QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            223344444555555555555555555432    23444444444445555555555555554443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.65  E-value=1e-15  Score=145.44  Aligned_cols=261  Identities=16%  Similarity=0.169  Sum_probs=95.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006010          372 TLISGLFKEGKAEDAMKLWKQMMEKG-CKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES  450 (664)
Q Consensus       372 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  450 (664)
                      .+...+.+.|++++|++++++..... ...+...|..+.......++.+.|...++++...+ +.++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence            44566667777777777775544332 22344445555555666777888888888877664 3345556666665 577


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCcCHHhHHHHHHHHHHcCCHHHHHHH
Q 006010          451 GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG-CKPDVVAYSSMIHGLCNAGSVEEALKL  529 (664)
Q Consensus       451 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~  529 (664)
                      +++++|.+++....+..  ++...+..++..+...++++++..+++.+.... ..++...|..+...+.+.|+.++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            78888887777665543  455666677777788888888888888766432 234566777778888888888888888


Q ss_pred             HHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHH
Q 006010          530 FNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIR  609 (664)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~  609 (664)
                      +++++...|+   |....+.++..+...|+.+++.++++...+.. ..|+..+..+..+                     
T Consensus       169 ~~~al~~~P~---~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~---------------------  223 (280)
T PF13429_consen  169 YRKALELDPD---DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAA---------------------  223 (280)
T ss_dssp             HHHHHHH-TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHH---------------------
T ss_pred             HHHHHHcCCC---CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHH---------------------
Confidence            8888765555   56677788888888888888888877777632 2223333333333                     


Q ss_pred             hhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          610 LFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       610 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      +...|++++|..++++..+. .+.|+.....+++++...|+.++|.++.++.+
T Consensus       224 ~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  224 YLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT----------------
T ss_pred             hccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            78888888888888888775 35578888888888888888888888766643

>TIGR00540 hemY_coli hemY protein

Probab=99.64  E-value=1e-12  Score=131.58  Aligned_cols=287  Identities=12%  Similarity=0.048  Sum_probs=182.6

Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCChh
Q 006010          273 CKNGELGRAAKLVDNMFLKGCLPN-EVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEV--TYGTIINGLVKLGRAV  349 (664)
Q Consensus       273 ~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~  349 (664)
                      ...|+++.|.+.+.+..+..  |+ ...+-....+....|+.+.|.+++.+..+.  .|+..  ........+...|+++
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH  170 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence            46799999999999887663  44 344455567888899999999999998775  34443  3444578888999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCChhHHHHHH
Q 006010          350 DGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYS-ALIDGL---CRVGKPDEAEEIL  425 (664)
Q Consensus       350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~~~~~~a~~~~  425 (664)
                      .|...++.+.+..+. +...+..+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++   ...+..+++.+.+
T Consensus       171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            999999999998755 6778889999999999999999999999998654 333332 122222   3333333444455


Q ss_pred             HHHHHCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcCCChHHHHHHHHHHH
Q 006010          426 FEMINNGC---AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVC---YSVLIHGLCEDGKLREARMVWTQML  499 (664)
Q Consensus       426 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~  499 (664)
                      ..+.+...   +.+...+..+...+...|+.++|.+++++..+..  |+...   ...........++.+.+.+.++...
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA  326 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence            55554421   1256666667777777777777777777776654  22221   0111111223455566666665555


Q ss_pred             hCCCCcC-H--HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          500 SRGCKPD-V--VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       500 ~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      +.  .|+ .  ....++...+.+.|++++|.+.|+.+  ......|+...+..+...+.+.|+.++|.+++++..
T Consensus       327 k~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a--~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       327 KN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNV--AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             Hh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh--HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            43  233 2  33445666666666666666666632  111234555555566666666666666666666543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.64  E-value=1.8e-12  Score=128.90  Aligned_cols=252  Identities=15%  Similarity=0.186  Sum_probs=163.4

Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 006010          273 CKNGELGRAAKLVDNMFLKGCLPNEVTYN--TLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVD  350 (664)
Q Consensus       273 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  350 (664)
                      .+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|.+.++++.+.. +-++.....+...|.+.|++++
T Consensus       129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence            4555555555555555443  22221111  22344455555555555555555443 2344445555555555555555


Q ss_pred             HHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010          351 GARVLMSMEERKFHVNE-------YIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEE  423 (664)
Q Consensus       351 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  423 (664)
                      |.+++..+.+.+..++.       ..|..++.......+.+...++|+.+.+. .+.++.....+...+...|+.++|..
T Consensus       206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~  284 (398)
T PRK10747        206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ  284 (398)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            55555555554333111       12222333333344555666666665443 23467778888888999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 006010          424 ILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC  503 (664)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  503 (664)
                      ++++..+.  +++....  ++.+....++.+++.+..+...+.. |.|...+..+...+...+++++|.+.|+.+.+.  
T Consensus       285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--  357 (398)
T PRK10747        285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--  357 (398)
T ss_pred             HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence            99988875  4555322  2333445688999999999888776 567777888899999999999999999999884  


Q ss_pred             CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010          504 KPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC  535 (664)
Q Consensus       504 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (664)
                      .|+...+..+..++.+.|+.++|..++++.+.
T Consensus       358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            68888888999999999999999999998853

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=1.9e-11  Score=109.60  Aligned_cols=453  Identities=13%  Similarity=0.075  Sum_probs=286.1

Q ss_pred             HHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcC
Q 006010          127 AYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLG  206 (664)
Q Consensus       127 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  206 (664)
                      -+....++..|+.+++--... +......+-.-+..++...|++++|+..|..+...    -.++...+..+..++.-.|
T Consensus        31 dfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~FyLg  105 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DDAPAELGVNLACCKFYLG  105 (557)
T ss_pred             HHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CCCCcccchhHHHHHHHHH
Confidence            345667888888887765322 11111223334667888999999999999998762    3356666667777777889


Q ss_pred             ChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010          207 LVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVD  286 (664)
Q Consensus       207 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  286 (664)
                      .+.+|..+-....+     ++-.-..|++...+.++-++...+.+.+...     ..---+|.......-.+.+|++++.
T Consensus       106 ~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk  175 (557)
T KOG3785|consen  106 QYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK  175 (557)
T ss_pred             HHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999998876643     3445566777778888888877777666542     2333345555555567899999999


Q ss_pred             HHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010          287 NMFLKGCLPNEVTYNTLIH-GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV  365 (664)
Q Consensus       287 ~~~~~g~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  365 (664)
                      +....  .|+....|..+. +|.+..-++-+.++++-.++. ++.++...+..+....+.-.-..|..-..++.+.+-..
T Consensus       176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~  252 (557)
T KOG3785|consen  176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE  252 (557)
T ss_pred             HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence            98876  455556665444 567777788888988888775 23334444444444444333333444444444332110


Q ss_pred             CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010          366 NEYIYSTLISGLFKE-----GKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTY  440 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  440 (664)
                           ...+.-.++.     .+-+.|++++-.+.+.  -|  ..--.++-.|.+.+++.+|..+.+++.    |.++.-|
T Consensus       253 -----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey  319 (557)
T KOG3785|consen  253 -----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY  319 (557)
T ss_pred             -----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHH
Confidence                 1223333333     2457788888776654  22  233345667889999999998887764    2333333


Q ss_pred             HHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH
Q 006010          441 SSLMKGFFESG-------KGHKAVEIWKDMAKNNCVYNEV-CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS  512 (664)
Q Consensus       441 ~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  512 (664)
                      ..-.-.+...|       ...-|.+.|+..-..+...|.. --.++..++.-..++++.+..+..+...-...|... ..
T Consensus       320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N  398 (557)
T KOG3785|consen  320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LN  398 (557)
T ss_pred             HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hH
Confidence            22222223333       3455666676665554433332 234556666667788999988888877644434333 35


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHH-HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhh
Q 006010          513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYN-ILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKE  591 (664)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~  591 (664)
                      +.++++..|++.+|+++|-++  ..+.++ |..+|. .+.++|.+.|+++-|++++-++-   ...+..+...+      
T Consensus       399 ~AQAk~atgny~eaEelf~~i--s~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLql------  466 (557)
T KOG3785|consen  399 LAQAKLATGNYVEAEELFIRI--SGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQL------  466 (557)
T ss_pred             HHHHHHHhcChHHHHHHHhhh--cChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHH------
Confidence            788999999999999999887  555544 444554 55688899999999998877664   22233332222      


Q ss_pred             hccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHH
Q 006010          592 KLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWE  639 (664)
Q Consensus       592 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  639 (664)
                                    ++..|.+.+.+=-|.+.|+.+..  ..|+++.|.
T Consensus       467 --------------IAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe  498 (557)
T KOG3785|consen  467 --------------IANDCYKANEFYYAAKAFDELEI--LDPTPENWE  498 (557)
T ss_pred             --------------HHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence                          23337888888778888887765  577777774

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.62  E-value=5e-15  Score=140.81  Aligned_cols=261  Identities=15%  Similarity=0.158  Sum_probs=68.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Q 006010          123 FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTV  202 (664)
Q Consensus       123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  202 (664)
                      .++..+.+.|++++|++++.........+.++..|..+.......++++.|...|+++...++.    +...+..++.. 
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~----~~~~~~~l~~l-   87 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA----NPQDYERLIQL-   87 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccc-
Confidence            3455555556666666655433222111233444444455555555566666666655542111    22234444444 


Q ss_pred             HhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHH
Q 006010          203 CRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDG-CFPTPVTFNVLINGLCKNGELGRA  281 (664)
Q Consensus       203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a  281 (664)
                      ...+++++|.+++...-+.  .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A  165 (280)
T PF13429_consen   88 LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA  165 (280)
T ss_dssp             --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred             ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            4555555555555544333  2344444555555555566666555555544321 223445555555555555666666


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          282 AKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER  361 (664)
Q Consensus       282 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  361 (664)
                      ++.+++..+..+. |......++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|..++++....
T Consensus       166 ~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~  243 (280)
T PF13429_consen  166 LRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL  243 (280)
T ss_dssp             HHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence            6666555554211 34445555555555555555555555554432 334444555555555555555555555555544


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010          362 KFHVNEYIYSTLISGLFKEGKAEDAMKLWKQM  393 (664)
Q Consensus       362 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  393 (664)
                      .+. |......+..++...|+.++|..+.+++
T Consensus       244 ~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  244 NPD-DPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             STT--HHHHHHHHHHHT---------------
T ss_pred             ccc-cccccccccccccccccccccccccccc
Confidence            322 4444555555555555555555555443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.60  E-value=3.9e-09  Score=102.62  Aligned_cols=484  Identities=15%  Similarity=0.174  Sum_probs=313.4

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHh--------cCCHHHHHHHHHHhhhcCCCCCC
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGK--------AHLVEEAIRLFHTMVDEFHCKRT  153 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~  153 (664)
                      +...|...+..-.. .-......+|+++.+.- +.+-..|...++.-..        ...++..-..|+..+-.  ...=
T Consensus        26 svk~W~RYIe~k~~-sp~k~~~~lYERal~~l-p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~--mHkm  101 (835)
T KOG2047|consen   26 SVKCWLRYIEHKAG-SPDKQRNLLYERALKEL-PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVF--MHKM  101 (835)
T ss_pred             hHHHHHHHHHHHcc-CChHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH--HhcC
Confidence            55566666554443 22344556677777643 3344555554422111        11122222222222110  0122


Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHH
Q 006010          154 VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTL  233 (664)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  233 (664)
                      +..|...++.+.++|+.......|+..+..-  .+......|...+......|-++.+..+++..++.    ++..-+..
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL--pvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey  175 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRAL--PVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY  175 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--chHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence            4588999999999999999999999998742  24445568889999999999999999999999865    45557888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCH--HHHHH
Q 006010          234 MDGLCKENRLDEAVLLLDEMQVDG------CFPTPVTFNVLINGLCKNGELG---RAAKLVDNMFLKGCLPNE--VTYNT  302 (664)
Q Consensus       234 ~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~g~~p~~--~~~~~  302 (664)
                      +..+++.+++++|-+.+.......      .+.+-..|..+.+...++-+.-   ....+++.+..+  -+|.  ..|.+
T Consensus       176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S  253 (835)
T KOG2047|consen  176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS  253 (835)
T ss_pred             HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence            899999999999999998876532      2445667777777776654432   334455555443  3343  47899


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------------------hhHHHHHHHHHHH
Q 006010          303 LIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGR----------------------AVDGARVLMSMEE  360 (664)
Q Consensus       303 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~  360 (664)
                      |...|.+.|.+++|.++|++....  .....-|..+.+.|+....                      ++-....|+.+..
T Consensus       254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~  331 (835)
T KOG2047|consen  254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN  331 (835)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence            999999999999999999999875  3344445555555543211                      1222223333332


Q ss_pred             cCC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChhHHHH
Q 006010          361 RKF-----------HVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN------TVVYSALIDGLCRVGKPDEAEE  423 (664)
Q Consensus       361 ~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~  423 (664)
                      ..+           +-+...|..-+.  +..|+..+....|.+..+. +.|.      ...|..+...|-..|+.+.|..
T Consensus       332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv  408 (835)
T KOG2047|consen  332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV  408 (835)
T ss_pred             ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence            211           012222222222  2356677777788777654 2222      3467788889999999999999


Q ss_pred             HHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHH
Q 006010          424 ILFEMINNGCAAN---AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCV-----------------YNEVCYSVLIHGLC  483 (664)
Q Consensus       424 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~  483 (664)
                      +|++..+...+.-   ..+|..-...-.+..+++.|++++++....--.                 .+...|...++..-
T Consensus       409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE  488 (835)
T KOG2047|consen  409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE  488 (835)
T ss_pred             HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence            9999988754322   356666667777888999999998876542111                 12234566666667


Q ss_pred             cCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH-hHHHHHHHHHHH-c--CC
Q 006010          484 EDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV-FTYNILLNALCK-Q--SN  559 (664)
Q Consensus       484 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~--g~  559 (664)
                      ..|-++....+++++++..+. ++......+..+..+.-++++.++|++-+.+  -.-|+. .+|+..+.-+.+ -  ..
T Consensus       489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L--Fk~p~v~diW~tYLtkfi~rygg~k  565 (835)
T KOG2047|consen  489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL--FKWPNVYDIWNTYLTKFIKRYGGTK  565 (835)
T ss_pred             HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc--CCCccHHHHHHHHHHHHHHHhcCCC
Confidence            788999999999999987654 3334444444555667799999999998533  223443 478887766543 2  37


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          560 ISHSIDLLNSMMDRGCDPDLVTCNIFL  586 (664)
Q Consensus       560 ~~~A~~~~~~~~~~~~~p~~~~~~~ll  586 (664)
                      .+.|.++|+++++ |++|...-+..++
T Consensus       566 lEraRdLFEqaL~-~Cpp~~aKtiyLl  591 (835)
T KOG2047|consen  566 LERARDLFEQALD-GCPPEHAKTIYLL  591 (835)
T ss_pred             HHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence            8999999999999 6777655444443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=1.2e-11  Score=109.64  Aligned_cols=225  Identities=14%  Similarity=0.107  Sum_probs=99.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhc
Q 006010          270 NGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNE----VTYGTIINGLVKL  345 (664)
Q Consensus       270 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~  345 (664)
                      .-|...|-+|.|+++|..+.+.|. --......|+..|-...+|++|++.-+++.+.+-.+..    ..|.-+...+...
T Consensus       115 ~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~  193 (389)
T COG2956         115 RDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS  193 (389)
T ss_pred             HHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence            334444444444444444433221 12223344444444444444444444444443211111    1112222222233


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006010          346 GRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEIL  425 (664)
Q Consensus       346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  425 (664)
                      .+.+.|..++.+..+.+.. .+..--.+.+.+...|+++.|++.|+.+.+++..--+.+...|..+|...|+.++....+
T Consensus       194 ~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         194 SDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             hhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4444445555444443322 222223344455555555555555555555543333444555555566666666666666


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHh
Q 006010          426 FEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE---DGKLREARMVWTQMLS  500 (664)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~  500 (664)
                      ..+.+..  +.......+.+.-....-.+.|...+.+-....  |+...+..++..-..   .|...+-+.++.+|+.
T Consensus       273 ~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         273 RRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             HHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            5555542  223333333333333344444444444443332  566555555554432   2334444455555543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.58  E-value=4.7e-11  Score=109.51  Aligned_cols=285  Identities=16%  Similarity=0.161  Sum_probs=181.2

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSL  319 (664)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~  319 (664)
                      .|++.+|+++..+-.+.+-. ....|..-+.+.-..||.+.+-+++.+..+....++...+-+........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            46666666666665554422 23344444555556666666666666665543334445555555666666666666666


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 006010          320 LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNE-------YIYSTLISGLFKEGKAEDAMKLWKQ  392 (664)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~  392 (664)
                      +.++.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+.       .+|..+++-....+..+.-...|++
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            66666554 334555666666666666666666666666666544332       2455555555555555555556666


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 006010          393 MMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNE  472 (664)
Q Consensus       393 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  472 (664)
                      ...+ .+.++..-..++.-+.+.|+.++|.++.++..+++..++   . ...-.+.+-++...-++..+.-.+.. +.++
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p  328 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP  328 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence            5443 334566666777778888888888888888888765544   1 11223445566666666666655544 4555


Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010          473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEML  534 (664)
Q Consensus       473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (664)
                      ..+.+|...|.+.+.|.+|...|+..++.  .|+..+|+.+..++.+.|+..+|.+.+++.+
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            77777888888888888888888877764  6778888888888888888888888887774

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1.2e-12  Score=127.40  Aligned_cols=283  Identities=14%  Similarity=0.125  Sum_probs=209.6

Q ss_pred             ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          312 NLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKF--HVNEYIYSTLISGLFKEGKAEDAMKL  389 (664)
Q Consensus       312 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~  389 (664)
                      +..+|...|..+..+ +.-...+...+..+|...+++++|.++|+.+.+..+  --+...|.+.+--+-+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            356777777774443 222334555667777777888888888877766521  1145566666554322    122222


Q ss_pred             H-HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006010          390 W-KQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNC  468 (664)
Q Consensus       390 ~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  468 (664)
                      + +.+.... +..+.+|.++.++|.-.++.+.|++.|+++++.+ +-...+|+.+..-+.....+|.|...|+..+... 
T Consensus       409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-  485 (638)
T KOG1126|consen  409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-  485 (638)
T ss_pred             HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence            2 2333332 3367899999999999999999999999999874 4477888988888899999999999999988754 


Q ss_pred             CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHH
Q 006010          469 VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTY  547 (664)
Q Consensus       469 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  547 (664)
                      +.+..+|-.+.-.|.+.++++.|.-.|+++++-  .| +.+....++..+.+.|+.|+|+.+++++..+++.   |+..-
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n~l~~  560 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK---NPLCK  560 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---CchhH
Confidence            344556777888999999999999999999885  45 4566777888899999999999999999766655   44444


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH
Q 006010          548 NILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML  627 (664)
Q Consensus       548 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  627 (664)
                      -..+..+...+++++|+..++++.+  +.|+..+...++...                    |.+.|+.+.|..-|.-|.
T Consensus       561 ~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki--------------------~k~~~~~~~Al~~f~~A~  618 (638)
T KOG1126|consen  561 YHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKI--------------------YKRLGNTDLALLHFSWAL  618 (638)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHH--------------------HHHHccchHHHHhhHHHh
Confidence            4556677788999999999999998  788877665555543                    899999999999999988


Q ss_pred             Hc
Q 006010          628 QK  629 (664)
Q Consensus       628 ~~  629 (664)
                      +.
T Consensus       619 ~l  620 (638)
T KOG1126|consen  619 DL  620 (638)
T ss_pred             cC
Confidence            74

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.57  E-value=1.3e-11  Score=109.52  Aligned_cols=288  Identities=14%  Similarity=0.129  Sum_probs=160.9

Q ss_pred             CCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCC---HHHHHHHHHHHHhcCChh
Q 006010          168 GLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPD---IYTYCTLMDGLCKENRLD  244 (664)
Q Consensus       168 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~  244 (664)
                      ++.++|.+.|-+|.+.+    +.+..+.-++.+.|.+.|..++|+.+.+.+..+.--+.   ..+...|..-|...|-+|
T Consensus        49 ~Q~dKAvdlF~e~l~~d----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          49 NQPDKAVDLFLEMLQED----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             cCcchHHHHHHHHHhcC----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence            45566666666665521    11333455556666666666666666666554410111   123444556666666666


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHH
Q 006010          245 EAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNE----VTYNTLIHGLCLKGNLDKAVSLL  320 (664)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~  320 (664)
                      .|+.+|..+.+.+. --......|+..|-...+|++|+++-+++.+.+..+..    ..|.-+...+....+++.|..++
T Consensus       125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l  203 (389)
T COG2956         125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL  203 (389)
T ss_pred             HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            66666666665431 23345556666666666666666666666655444332    23455555556666677777777


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006010          321 DRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKP  400 (664)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  400 (664)
                      .+..+.+ +..+..--.+.+.....|+++.|.+.++.+.++++..-..+...|..+|.+.|+.++....+..+.+...  
T Consensus       204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--  280 (389)
T COG2956         204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--  280 (389)
T ss_pred             HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence            7666553 2233333445566666777777777777777665554555666666777777777777777776666432  


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 006010          401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES---GKGHKAVEIWKDMAK  465 (664)
Q Consensus       401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~  465 (664)
                      +...-..+........-.+.|..++.+-++.  .|+...+..+++.-...   |...+....++.|..
T Consensus       281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            2333333333333344455555555555544  56777777777655433   233444445555543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.57  E-value=2.6e-11  Score=121.52  Aligned_cols=536  Identities=16%  Similarity=0.138  Sum_probs=306.0

Q ss_pred             CCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH
Q 006010           76 LGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK  155 (664)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  155 (664)
                      ..|..|+..+|.+++..|+..|+.+.|- +|.-|.-.+.+.....++.++......++.+.+.            .|.++
T Consensus        18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aD   84 (1088)
T KOG4318|consen   18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLAD   84 (1088)
T ss_pred             HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchh
Confidence            3467789999999999999999999998 9988888888888889999998888888766543            57888


Q ss_pred             HHHHHHHHHHHcCCHhH---HHHHHHHHHhc-ccCCCC-cCHHH-------------HHHHHHHHHhcCChhHHHHHHhh
Q 006010          156 SFNSVLNVIIQEGLYHR---ALEFYNHIVNA-KHMNIL-PNTLT-------------FNLVIKTVCRLGLVDNAIQLFRE  217 (664)
Q Consensus       156 ~~~~l~~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~-~~~~~-------------~~~ll~~~~~~g~~~~A~~~~~~  217 (664)
                      +|..+...|...|+...   ..+.++.+... .+.|+. |....             -..++....-.|-++.+++++..
T Consensus        85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~  164 (1088)
T KOG4318|consen   85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK  164 (1088)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999998654   33322222110 001111 00000             11223333444566666777666


Q ss_pred             cccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006010          218 MPVRN-CEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN  296 (664)
Q Consensus       218 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~  296 (664)
                      +.... ..|...    .++-+....  ....++.......--.|++.+|..+++.-...|+.+.|..++.+|.+.|.+.+
T Consensus       165 ~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir  238 (1088)
T KOG4318|consen  165 VPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR  238 (1088)
T ss_pred             CCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence            64432 111111    233333322  22333333333221258999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CHHHHHH
Q 006010          297 EVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV----NEYIYST  372 (664)
Q Consensus       297 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~  372 (664)
                      ..-|..++-+   .++...+..+++-|.+.|+.|+..|+...+..+.++|....+.        .|.+.    +...+..
T Consensus       239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq~~hg~tAavrsa  307 (1088)
T KOG4318|consen  239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQLAHGFTAAVRSA  307 (1088)
T ss_pred             cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccchhhhhhHHHHHH
Confidence            8877777765   7888889999999999999999999998887777755522221        12221    1222222


Q ss_pred             HHHHHHhcCCh-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHH
Q 006010          373 LISGLFKEGKA-----EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG---CAANAFTYSSLM  444 (664)
Q Consensus       373 l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~  444 (664)
                      +..+.....+.     .-....+.+..-.|+.-....|...+. ....|.-++++.+...+..-.   .+.++..+..++
T Consensus       308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l  386 (1088)
T KOG4318|consen  308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL  386 (1088)
T ss_pred             HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence            22221111111     111122222222233323333333222 223555556665555554321   112333343333


Q ss_pred             HHHHhcC----------------------ChHHHHHHHHHHHHC----------------CCCC-------CHHHHHHHH
Q 006010          445 KGFFESG----------------------KGHKAVEIWKDMAKN----------------NCVY-------NEVCYSVLI  479 (664)
Q Consensus       445 ~~~~~~~----------------------~~~~a~~~~~~~~~~----------------~~~~-------~~~~~~~l~  479 (664)
                      .-|.+.-                      +..+..+......+.                ...+       -...-+.++
T Consensus       387 rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~  466 (1088)
T KOG4318|consen  387 RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH  466 (1088)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence            3333221                      111111111111000                0000       001223445


Q ss_pred             HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010          480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN  559 (664)
Q Consensus       480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  559 (664)
                      ..++..-+..+++..-+..... .-|  ..|..|++-++.....+.|..+.++....+.....|...+..+.+.+.+.+.
T Consensus       467 l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~  543 (1088)
T KOG4318|consen  467 LTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI  543 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence            5555555555555443333322 112  4788999999999999999999999965555566677778889999999999


Q ss_pred             hhHHHHHHHHHHHCC-CCCC-HHHHHHHHHhhhhhccC--CCCchhhhHHHH--------HHhhhcCCcchHHHHHHHHH
Q 006010          560 ISHSIDLLNSMMDRG-CDPD-LVTCNIFLTALKEKLEA--PQDGTDFLNELA--------IRLFKRQRTSGGFKIVEVML  627 (664)
Q Consensus       560 ~~~A~~~~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~--~~~~~~~~~~l~--------~~~~~~g~~~~A~~~~~~~~  627 (664)
                      ...+.++++++.+.- ..|+ ..++-.++...+..+..  ..+..+++.+++        .+..+.++...|.++.+.-.
T Consensus       544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~  623 (1088)
T KOG4318|consen  544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEE  623 (1088)
T ss_pred             HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHH
Confidence            999999999998631 2222 22333444443322211  111112222222        22344556666777777666


Q ss_pred             HcCCCCChHHHHHHHHHhc
Q 006010          628 QKFLSPQTSTWERVVQELC  646 (664)
Q Consensus       628 ~~~~~~~~~~~~~l~~~~~  646 (664)
                      ++ ++|.|.....+.+...
T Consensus       624 qk-yk~~P~~~e~lcrlv~  641 (1088)
T KOG4318|consen  624 QK-YKPYPKDLEGLCRLVY  641 (1088)
T ss_pred             HH-hcCChHHHHHHHHHHH
Confidence            55 5666655555544443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1e-12  Score=127.88  Aligned_cols=286  Identities=14%  Similarity=0.088  Sum_probs=210.4

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          242 RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGC--LPNEVTYNTLIHGLCLKGNLDKAVSL  319 (664)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~  319 (664)
                      +..+|...|+.+... +.-+..+...+..+|...+++++|+++|+.+.+...  .-+.+.|.+.+-.+-+   .-+---+
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence            457788888885544 333446667788889999999999999998876521  2255677776654322   1111122


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006010          320 LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK  399 (664)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  399 (664)
                      -+.+.+. -+..+.+|.++.++|.-+++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+.....
T Consensus       410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r  487 (638)
T KOG1126|consen  410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR  487 (638)
T ss_pred             HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence            2333333 2556788999999999999999999999998876543 6778888888888888899999999888764222


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI  479 (664)
Q Consensus       400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  479 (664)
                       +-.+|..+...|.+.++++.|+-.|+.+.+.+ |.+......+...+.+.|+.++|+++++++...+ +.|+..--..+
T Consensus       488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~  564 (638)
T KOG1126|consen  488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA  564 (638)
T ss_pred             -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence             33455567778889999999999999988876 6677777888888888999999999999988876 44554444456


Q ss_pred             HHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010          480 HGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP  538 (664)
Q Consensus       480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (664)
                      ..+...++.++|+..++++++.  .|+ ...+..++..|.+.|+.+.|+.-|.-+..++|
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            6777888899999999998874  555 46677888889999999999988888854444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.55  E-value=1.6e-09  Score=105.45  Aligned_cols=468  Identities=14%  Similarity=0.099  Sum_probs=256.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Q 006010          123 FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTV  202 (664)
Q Consensus       123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  202 (664)
                      .++.+ ...+++...++..+.+++.++  ....+....+-.+...|+-++|.......++.    -..+.++|..+.-.+
T Consensus        13 ~~lk~-yE~kQYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~   85 (700)
T KOG1156|consen   13 RALKC-YETKQYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRN----DLKSHVCWHVLGLLQ   85 (700)
T ss_pred             HHHHH-HHHHHHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhcc----CcccchhHHHHHHHH
Confidence            33333 356667777777777766433  33334444444555567777777777666551    122455676666666


Q ss_pred             HhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006010          203 CRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAA  282 (664)
Q Consensus       203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  282 (664)
                      ....++++|++.|......+ +.|...+.-+.-.-.+.|+++........+.+.. +.....|..++.++.-.|+...|.
T Consensus        86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~  163 (700)
T KOG1156|consen   86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL  163 (700)
T ss_pred             hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777777777776665 4456666666656666666666666666655542 223345666666777777777777


Q ss_pred             HHHHHHHHcC-CCCCHHHHHHH------HHHHHhcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCChhHHHHH
Q 006010          283 KLVDNMFLKG-CLPNEVTYNTL------IHGLCLKGNLDKAVSLLDRMVASKCMPNEV-TYGTIINGLVKLGRAVDGARV  354 (664)
Q Consensus       283 ~~~~~~~~~g-~~p~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~  354 (664)
                      .+++...+.. -.|+...+...      .....+.|..+.|.+.+......  ..|.. .-.+-...+.+.++.++|..+
T Consensus       164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~  241 (700)
T KOG1156|consen  164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV  241 (700)
T ss_pred             HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence            7777765543 23444433322      22344566666666665554332  11222 223344556677777788777


Q ss_pred             HHHHHHcCCCCCHHHHHHHH-HHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHC
Q 006010          355 LMSMEERKFHVNEYIYSTLI-SGLFKEGKAEDAM-KLWKQMMEKGCKPNTVVYSAL-IDGLCRVGKPDEAEEILFEMINN  431 (664)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~  431 (664)
                      +..+...+  ||...|...+ .++.+-.+.-+++ .+|....+.-  |.......+ +.......-.+..-+++...++.
T Consensus       242 y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K  317 (700)
T KOG1156|consen  242 YRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK  317 (700)
T ss_pred             HHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence            77777663  3444444433 3333233333333 4454444321  111111111 11111122234444556666666


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----C----------CCCCCHHHH--HHHHHHHHcCCChHHHHHHH
Q 006010          432 GCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAK----N----------NCVYNEVCY--SVLIHGLCEDGKLREARMVW  495 (664)
Q Consensus       432 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----------~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~  495 (664)
                      |+++-   +..+...|-.-...+-..++...+..    .          .-+|....|  -.++..+-..|+++.|...+
T Consensus       318 g~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI  394 (700)
T KOG1156|consen  318 GVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI  394 (700)
T ss_pred             CCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            65432   22222222211111101111111110    0          014555544  45677788899999999999


Q ss_pred             HHHHhCCCCcCH-HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010          496 TQMLSRGCKPDV-VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG  574 (664)
Q Consensus       496 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  574 (664)
                      +..+++  .|+. .-|..=.+.+...|++++|..+++++.+.+   .+|..+=..-..-..+.++.++|..+.....+.|
T Consensus       395 d~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD---~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  395 DLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD---TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             HHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence            999875  5664 455666788889999999999999985432   2355544456666778899999999998888766


Q ss_pred             CCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHH
Q 006010          575 CDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVM  626 (664)
Q Consensus       575 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  626 (664)
                      .  +......-++.           ..|.-+=|..|.++|++..|.+=|..+
T Consensus       470 ~--~~~~~L~~mqc-----------mWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  470 F--GAVNNLAEMQC-----------MWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             c--chhhhHHHhhh-----------HHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            4  32222222222           222233344577777776666544443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.54  E-value=7.8e-11  Score=108.07  Aligned_cols=285  Identities=12%  Similarity=0.049  Sum_probs=149.6

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 006010          275 NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARV  354 (664)
Q Consensus       275 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  354 (664)
                      .|+|.+|+++..+..+.+.. ....|..-..+.-..|+.+.+-.++.++-+..-.++.....+..+.....|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            56777777777665555433 23345555556666677777777776666542234444555555666666666666666


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCChhHHHHHHHH
Q 006010          355 LMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTV-------VYSALIDGLCRVGKPDEAEEILFE  427 (664)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~  427 (664)
                      ++++.+.++. +.........+|.+.|++.....++..+.+.|.-.+..       +|..+++-....+..+.-...++.
T Consensus       176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            6666665544 44555666666666666666666666666665543332       333333333333333332233333


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH
Q 006010          428 MINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV  507 (664)
Q Consensus       428 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  507 (664)
                      ...+ ...++.....++.-+.+.|+.++|.++..+..+.+..++..    ..-.+.+-++...-++..++-.... +-++
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p  328 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP  328 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence            3222 23344455555555555556666655555555554333311    1122334444444444444433321 1223


Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      ..+.+|...|.+.+.+.+|...|+.+++    ..|+..+|+.+.+++.+.|+..+|.++.++..
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~----~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALK----LRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            4555555555555555555555555532    33455555555555555555555555555544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.53  E-value=1.1e-08  Score=99.95  Aligned_cols=466  Identities=13%  Similarity=0.092  Sum_probs=300.6

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVI  164 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (664)
                      ++..-+.-+...+++....+..+.+++.. +....++....-.+...|+-++|.......+.  +...+...|..++-.+
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~   85 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQ   85 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHH
Confidence            33344445667788899999998888844 33455666666667788999999999887754  4566778899888888


Q ss_pred             HHcCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006010          165 IQEGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRL  243 (664)
Q Consensus       165 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  243 (664)
                      ....++++|+++|..++.     +.| |...+.-+.-.-.+.|+++.....-..+.+.. +.....|..+..++.-.|+.
T Consensus        86 R~dK~Y~eaiKcy~nAl~-----~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y  159 (700)
T KOG1156|consen   86 RSDKKYDEAIKCYRNALK-----IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEY  159 (700)
T ss_pred             hhhhhHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence            888999999999999987     334 55677777667778888888888877777663 33456788888889999999


Q ss_pred             hHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 006010          244 DEAVLLLDEMQVDG-CFPTPVTFNVLI------NGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKA  316 (664)
Q Consensus       244 ~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a  316 (664)
                      ..|..++++..+.. -.|+...|....      ......|..+.|++.+..-... +......-..-...+.+.+++++|
T Consensus       160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA  238 (700)
T KOG1156|consen  160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA  238 (700)
T ss_pred             HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence            99999999887654 246666554433      3345678888888877664332 111222333455677889999999


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHH-HHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010          317 VSLLDRMVASKCMPNEVTYGTIIN-GLVKLGRAVDGA-RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMM  394 (664)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  394 (664)
                      ..++..++..  .||..-|...+. ++.+..+.-++. .++....+.-.. ....-..=+.......-.+..-+++..+.
T Consensus       239 ~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l  315 (700)
T KOG1156|consen  239 VKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLL  315 (700)
T ss_pred             HHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHh
Confidence            9999999987  466665555444 443344444444 555555443111 11111111111111222444556677777


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCChHHHHH
Q 006010          395 EKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMIN----NG----------CAANAFTY--SSLMKGFFESGKGHKAVE  458 (664)
Q Consensus       395 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~  458 (664)
                      +.|+++-   +..+...|-.....+-..++.-.+..    .|          -+|....|  -.++..|-+.|+++.|..
T Consensus       316 ~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~  392 (700)
T KOG1156|consen  316 SKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE  392 (700)
T ss_pred             hcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence            7776543   22333323221111111111111111    11          14444444  456778889999999999


Q ss_pred             HHHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcC
Q 006010          459 IWKDMAKNNCVYNE-VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLE  537 (664)
Q Consensus       459 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (664)
                      .++..+.+.  |+. ..|..-.+.+...|++++|..++++..+.+ .||...-.--+.-..++++.++|.++....  ..
T Consensus       393 yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skF--Tr  467 (700)
T KOG1156|consen  393 YIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKF--TR  467 (700)
T ss_pred             HHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHh--hh
Confidence            999998754  554 467677788999999999999999998875 456544445666677899999999999888  33


Q ss_pred             CCC--CCCH----hHHHHH--HHHHHHcCChhHHHHHHHHHH
Q 006010          538 PKS--QPDV----FTYNIL--LNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       538 ~~~--~~~~----~~~~~l--~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      .+.  ..|.    -.|-.+  ..+|.++|++..|++-|..+.
T Consensus       468 ~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  468 EGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             cccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            332  1111    123322  246778888888776555544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2.4e-08  Score=92.11  Aligned_cols=410  Identities=13%  Similarity=0.036  Sum_probs=188.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHhcccCCCCcCHHHH
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG-LYHRALEFYNHIVNAKHMNILPNTLTF  195 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~  195 (664)
                      +.+.....+.+|...++-+.|+......+..    ....-.+.++..+.+.| +-.++.--|...+...        ..-
T Consensus        96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t----~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--------p~a  163 (564)
T KOG1174|consen   96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPT----LRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--------PMA  163 (564)
T ss_pred             cHHHHHHHHHHHHHHccchHHHHHHhcCCcc----ccchhHHHHHHHHHhccccccHHHHhhhHHHHhc--------chH
Confidence            4456677888888899999999887766432    22223344444443333 2223333333333210        011


Q ss_pred             HHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 006010          196 NLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLC--KENRLDEAVLLLDEMQVD-GCFPTPVTFNVLINGL  272 (664)
Q Consensus       196 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~  272 (664)
                      -..|.+..+.+ +..+...=..|-...++|........+.++.  -.++-..+...+-.+... .++-++.....+.+.+
T Consensus       164 L~~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~  242 (564)
T KOG1174|consen  164 LQVIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCL  242 (564)
T ss_pred             HHHHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhh
Confidence            11122222211 0111111111222222333333333333332  234444444443333222 2344566667777777


Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH
Q 006010          273 CKNGELGRAAKLVDNMFLKGCLPNE-VTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDG  351 (664)
Q Consensus       273 ~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  351 (664)
                      ...|+.++|+..|++....  .|+. .........+...|+++....+...+.... .-....|-.-+.......+++.|
T Consensus       243 ~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rA  319 (564)
T KOG1174|consen  243 YYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERA  319 (564)
T ss_pred             hhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHH
Confidence            7777777777777776544  2222 222222333445566666555555554331 11112222222223333444444


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006010          352 ARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINN  431 (664)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  431 (664)
                      +.+-++..+.+..                                    +...+-.-...+...|++++|.-.|+.++..
T Consensus       320 L~~~eK~I~~~~r------------------------------------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L  363 (564)
T KOG1174|consen  320 LNFVEKCIDSEPR------------------------------------NHEALILKGRLLIALERHTQAVIAFRTAQML  363 (564)
T ss_pred             HHHHHHHhccCcc------------------------------------cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence            4444444433221                                    2222322233344455555555555555443


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-cCCChHHHHHHHHHHHhCCCCcCH-H
Q 006010          432 GCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI-HGLC-EDGKLREARMVWTQMLSRGCKPDV-V  508 (664)
Q Consensus       432 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~-~  508 (664)
                      . |.+...|..|+..|...|++.+|.-.-+...+.- +.+..+.+.+. ..+. ...--++|.+++++.+..  .|+- .
T Consensus       364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~  439 (564)
T KOG1174|consen  364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP  439 (564)
T ss_pred             c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence            2 3344555555555555555555544444333321 23333333331 1121 112235566666655542  4442 3


Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      ..+.+...+...|..+.++.++++.+.    ..||....+.|.+.+...+.+.+|.+.|..++.  +.|+...-.--++.
T Consensus       440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~~  513 (564)
T KOG1174|consen  440 AVNLIAELCQVEGPTKDIIKLLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLRL  513 (564)
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHHH
Confidence            444555556666666666666666642    445666666666666666666666666666665  55555443333333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.47  E-value=2.2e-08  Score=99.88  Aligned_cols=404  Identities=10%  Similarity=0.012  Sum_probs=253.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006010          223 CEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNT  302 (664)
Q Consensus       223 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~  302 (664)
                      +.-|...|..+.-++...|+++.+.+.|++.... +.-....|+.+...|...|.-..|..+++.-......|+..+--.
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            3447777888888888889999999999887653 233567788888888888888888888887665543354443333


Q ss_pred             HHH-HHH-hcCChHHHHHHHHHHHHC--CC--CCChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCC
Q 006010          303 LIH-GLC-LKGNLDKAVSLLDRMVAS--KC--MPNEVTYGTIINGLVKL-----------GRAVDGARVLMSMEERKFHV  365 (664)
Q Consensus       303 l~~-~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~  365 (664)
                      ++. .|. +.+.+++++++-.++...  +.  ...+..|..+.-+|...           ....++.+.+++..+.+.. 
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-  476 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-  476 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            333 332 456777777777666652  11  12333444444444322           1234566777777766544 


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK  445 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  445 (664)
                      |......+.--|+..++.+.|....++..+.+...+...|..+.-.+...+++.+|+.+.+.....- +.|......-+.
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~  555 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH  555 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence            3333333444566778899999999998888666788888888888888899999998888777641 111111111111


Q ss_pred             HHHhcCChHHHHHHHHHHHHC----------------------------CCCCCHHHHHHHHHHHHcCC---ChHHHHHH
Q 006010          446 GFFESGKGHKAVEIWKDMAKN----------------------------NCVYNEVCYSVLIHGLCEDG---KLREARMV  494 (664)
Q Consensus       446 ~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~g---~~~~A~~~  494 (664)
                      .-...++.++++.....+...                            .......++..+..-....+   ..+..   
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---  632 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---  632 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence            122234444444332222110                            00011112222221111110   01111   


Q ss_pred             HHHHHhCCCC--cC------HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHH
Q 006010          495 WTQMLSRGCK--PD------VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDL  566 (664)
Q Consensus       495 ~~~~~~~~~~--p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  566 (664)
                         +....+.  |+      ...|......+.+.+..++|...+.++-+..   .-....|......+...|.+++|.+.
T Consensus       633 ---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~---~l~~~~~~~~G~~~~~~~~~~EA~~a  706 (799)
T KOG4162|consen  633 ---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID---PLSASVYYLRGLLLEVKGQLEEAKEA  706 (799)
T ss_pred             ---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc---hhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence               1111112  22      2345566777888999999998888874322   22455677777788889999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHH--HHHHHHHcCCCCChHHHHHHHHH
Q 006010          567 LNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFK--IVEVMLQKFLSPQTSTWERVVQE  644 (664)
Q Consensus       567 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~  644 (664)
                      |.....  +.|+.+-....+..+                    +.+.|+..-|.+  ++..+.+. -+.+++.|..++..
T Consensus       707 f~~Al~--ldP~hv~s~~Ala~~--------------------lle~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v  763 (799)
T KOG4162|consen  707 FLVALA--LDPDHVPSMTALAEL--------------------LLELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEV  763 (799)
T ss_pred             HHHHHh--cCCCCcHHHHHHHHH--------------------HHHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Confidence            999987  788876544444443                    888998888888  99999986 35588999999999


Q ss_pred             hcccchHHHHHHHHHhh
Q 006010          645 LCRPKRIQAAINKCWSN  661 (664)
Q Consensus       645 ~~~~g~~~~A~~~~~~~  661 (664)
                      +-+.|+.++|.+.|+-.
T Consensus       764 ~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  764 FKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHHccchHHHHHHHHHH
Confidence            99999999999988754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=8.9e-09  Score=99.37  Aligned_cols=455  Identities=15%  Similarity=0.120  Sum_probs=269.0

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 006010           84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNV  163 (664)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (664)
                      +.+.+-++.+...|++++|.+....++..+ +.+..++..-+.++.+.++|++|+++...-..   ...+...+---+.+
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc   88 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYC   88 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHH
Confidence            566777888999999999999999999877 55777888888888999999999976654311   11111111233445


Q ss_pred             HHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHH--HHHHHHHHHHhcC
Q 006010          164 IIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIY--TYCTLMDGLCKEN  241 (664)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g  241 (664)
                      ..+.+..++|+..++-.-+       .+..+...-...+.+.|++++|..+|+.+.+.+. +|..  .-..++.+-.   
T Consensus        89 ~Yrlnk~Dealk~~~~~~~-------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a---  157 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLKGLDR-------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAA---  157 (652)
T ss_pred             HHHcccHHHHHHHHhcccc-------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH---
Confidence            5678999999999984322       2344666777888999999999999999987763 2222  1222221111   


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHc-------CCCCCH-------HHHHHHH
Q 006010          242 RLDEAVLLLDEMQVDGCFPTPVTFNV---LINGLCKNGELGRAAKLVDNMFLK-------GCLPNE-------VTYNTLI  304 (664)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~-------g~~p~~-------~~~~~l~  304 (664)
                       ...+. +.+....   .| ..+|..   ..-.+...|++.+|+++++.....       +-.-+.       ..-..+.
T Consensus       158 -~l~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla  231 (652)
T KOG2376|consen  158 -ALQVQ-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA  231 (652)
T ss_pred             -hhhHH-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence             11111 2222222   22 223333   334567889999999999988322       111111       1223455


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCh-h-HHHHHHHHHHHcCC----------CCCHHH
Q 006010          305 HGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKL---GRA-V-DGARVLMSMEERKF----------HVNEYI  369 (664)
Q Consensus       305 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~-~-~a~~~~~~~~~~~~----------~~~~~~  369 (664)
                      ..+...|+.++|..+|...+... ++|........+-+...   .++ + .++..++.......          ......
T Consensus       232 yVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~  310 (652)
T KOG2376|consen  232 YVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY  310 (652)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            56677999999999999999875 44554333332222211   111 1 11222222111100          001111


Q ss_pred             H-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010          370 Y-STLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGL--CRVGKPDEAEEILFEMINNGCAANAFTYSSLMKG  446 (664)
Q Consensus       370 ~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  446 (664)
                      . +.++..|  .+..+.+.++.......  .|. ..+..++..+  ++...+..+.+++...-+........+...++..
T Consensus       311 ~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl  385 (652)
T KOG2376|consen  311 RNNALLALF--TNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQL  385 (652)
T ss_pred             HHHHHHHHH--hhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHH
Confidence            1 2222222  33344444444333221  223 3334444333  2223577788888777765422235566677778


Q ss_pred             HHhcCChHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCcCH----HhHHH
Q 006010          447 FFESGKGHKAVEIWK--------DMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR--GCKPDV----VAYSS  512 (664)
Q Consensus       447 ~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~~~~  512 (664)
                      ....|+++.|.+++.        .+.+.+.  .+.+...+...+.+.++-+.|..++.+.+..  .-.+..    .++.-
T Consensus       386 ~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~  463 (652)
T KOG2376|consen  386 KISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE  463 (652)
T ss_pred             HHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence            889999999999998        4554443  3344455666777777777777777666532  001121    23344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      ++..-.+.|+.++|..+++++++..+   +|......++.+|++. +++.|..+-+.+.
T Consensus       464 aa~f~lr~G~~~ea~s~leel~k~n~---~d~~~l~~lV~a~~~~-d~eka~~l~k~L~  518 (652)
T KOG2376|consen  464 AAEFKLRHGNEEEASSLLEELVKFNP---NDTDLLVQLVTAYARL-DPEKAESLSKKLP  518 (652)
T ss_pred             HhHHHHhcCchHHHHHHHHHHHHhCC---chHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence            44555678999999999999965444   3788888888888875 6788877766544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.45  E-value=1.5e-09  Score=107.92  Aligned_cols=431  Identities=13%  Similarity=0.060  Sum_probs=218.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHH
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFN  196 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  196 (664)
                      +...|..+.-+....|+++.+.+.|++....  .......|..+...+...|.-..|+.+.+......  ..+++...+-
T Consensus       322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~--~~ps~~s~~L  397 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS--EQPSDISVLL  397 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc--cCCCcchHHH
Confidence            4556666666667777777777777766432  34455667777777777777777777776665421  1122333444


Q ss_pred             HHHHHHHh-cCChhHHHHHHhhccc--CCC--CCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCC
Q 006010          197 LVIKTVCR-LGLVDNAIQLFREMPV--RNC--EPDIYTYCTLMDGLCKE-----------NRLDEAVLLLDEMQVDGCFP  260 (664)
Q Consensus       197 ~ll~~~~~-~g~~~~A~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~  260 (664)
                      ..-+.|.+ .|..++++..-.++..  .+.  ......|..+.-+|...           ....++++.+++..+.+.. 
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-  476 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-  476 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            34444433 3555555555544443  110  11233444444444321           1235566777776665422 


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006010          261 TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIIN  340 (664)
Q Consensus       261 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  340 (664)
                      |+.....+.--|+..++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+.....- ..|......-+.
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~  555 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH  555 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence            3333333444466667777777777777776555567777777777777777777777777665431 111111111122


Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC--
Q 006010          341 GLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEK--GCKPNTVVYSALIDGLCRVG--  416 (664)
Q Consensus       341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~--  416 (664)
                      .-...++.+++......+...--  +..-..       ..++-....+....+.-.  .......++..+..-....+  
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we--~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~  626 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWE--AEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS  626 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHH--hhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence            22334555555555444432100  000000       000011111111111100  00001111111111111000  


Q ss_pred             -ChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 006010          417 -KPDEAEEILFEMINNGCAAN------AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR  489 (664)
Q Consensus       417 -~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  489 (664)
                       ..+..   +....... .|+      ...|......+.+.+..++|...+.+..+.. +.....|......+...|..+
T Consensus       627 ~~se~~---Lp~s~~~~-~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~  701 (799)
T KOG4162|consen  627 AGSELK---LPSSTVLP-GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLE  701 (799)
T ss_pred             cccccc---cCcccccC-CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhH
Confidence             01111   10000000 011      2344455556666666666666666655543 445555666666666777777


Q ss_pred             HHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHH--HHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHH
Q 006010          490 EARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALK--LFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDL  566 (664)
Q Consensus       490 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  566 (664)
                      +|.+.|......  .|+ +.+..++..++...|+..-|..  ++..+++.++.   +...|..+...+.+.|+.++|.+.
T Consensus       702 EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~---n~eaW~~LG~v~k~~Gd~~~Aaec  776 (799)
T KOG4162|consen  702 EAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL---NHEAWYYLGEVFKKLGDSKQAAEC  776 (799)
T ss_pred             HHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHccchHHHHHH
Confidence            777777776653  444 3456667777777776655555  77777655544   666777777777777777777777


Q ss_pred             HHHHHH
Q 006010          567 LNSMMD  572 (664)
Q Consensus       567 ~~~~~~  572 (664)
                      |....+
T Consensus       777 f~aa~q  782 (799)
T KOG4162|consen  777 FQAALQ  782 (799)
T ss_pred             HHHHHh
Confidence            777665

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.8e-08  Score=92.91  Aligned_cols=397  Identities=15%  Similarity=0.053  Sum_probs=242.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHH-HHhCCCCCCHHHHHHH
Q 006010          191 NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN-RLDEAVLLLDE-MQVDGCFPTPVTFNVL  268 (664)
Q Consensus       191 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~-~~~~~~~~~~~~~~~l  268 (664)
                      +...-...+.+|...++-+.|.....+....-   ...--+.++..+.+.| +-.++.--+.+ +.+.  +.-...    
T Consensus        96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p~aL~~----  166 (564)
T KOG1174|consen   96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--PMALQV----  166 (564)
T ss_pred             cHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhc--chHHHH----
Confidence            34455567778888899999998888776542   1222333333333322 22222222222 2221  111111    


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhc
Q 006010          269 INGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGL--CLKGNLDKAVSLLDRMVA-SKCMPNEVTYGTIINGLVKL  345 (664)
Q Consensus       269 i~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~  345 (664)
                      |.+..+.+ +..+...=..|......|+..+...-+.++  +-.++...+...+-.+.. .-++-|+.....+.+++...
T Consensus       167 i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~  245 (564)
T KOG1174|consen  167 IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN  245 (564)
T ss_pred             HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence            11111111 111111111222223334333333333333  334444444444433333 23566788888999999999


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006010          346 GRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEIL  425 (664)
Q Consensus       346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  425 (664)
                      |+.++|...|++....++. +........-.+.+.|+.++...+...+.... +-....|-.-.......++++.|+.+-
T Consensus       246 Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~  323 (564)
T KOG1174|consen  246 GDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFV  323 (564)
T ss_pred             cCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence            9999999999988765322 22223333344567888888888777776542 112233333334445677889999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc
Q 006010          426 FEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP  505 (664)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  505 (664)
                      ++.++.. +.+...+..-...+...|+.++|.-.|+...... |.+..+|..|+.+|...|++.+|..+-...... ++.
T Consensus       324 eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~  400 (564)
T KOG1174|consen  324 EKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN  400 (564)
T ss_pred             HHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence            9888875 4456666666677888899999999999887765 567889999999999999999998887766654 344


Q ss_pred             CHHhHHHHH-HHHH-HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010          506 DVVAYSSMI-HGLC-NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCN  583 (664)
Q Consensus       506 ~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  583 (664)
                      +..+...+. ..|. ...--++|.+++++.++++|+.   ....+.+...+...|..++++.++++.+.  ..||....+
T Consensus       401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y---~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~  475 (564)
T KOG1174|consen  401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY---TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHN  475 (564)
T ss_pred             chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc---HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHH
Confidence            556665553 3332 2233578999999987655553   23445667778889999999999999887  678877777


Q ss_pred             HHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010          584 IFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ  628 (664)
Q Consensus       584 ~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  628 (664)
                      .+.+.                     +...+.+++|...|..+..
T Consensus       476 ~Lgd~---------------------~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  476 HLGDI---------------------MRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHH---------------------HHHhhhHHHHHHHHHHHHh
Confidence            66666                     6666777777777777665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.43  E-value=5.9e-09  Score=104.67  Aligned_cols=128  Identities=18%  Similarity=0.195  Sum_probs=74.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010          301 NTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKE  380 (664)
Q Consensus       301 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  380 (664)
                      ..+...|...|++++|++++++.+++. +..+..|..-.+.+-..|++.+|.+.++.....+.. |...-+..+..+.+.
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence            444555666667777777776666652 223555666666666667777777666666665544 555555666666667


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010          381 GKAEDAMKLWKQMMEKGCKPNTV--------VYSALIDGLCRVGKPDEAEEILFEMIN  430 (664)
Q Consensus       381 ~~~~~a~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~~~~  430 (664)
                      |+.++|.+++......+..|...        -......+|.+.|++..|++.|..+.+
T Consensus       276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            77777776666665554322111        112334556666666666665555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=6.1e-08  Score=93.76  Aligned_cols=466  Identities=15%  Similarity=0.118  Sum_probs=245.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010          121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK  200 (664)
Q Consensus       121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~  200 (664)
                      ...=+..+...|++++|++...+++..  .+.+..++..-+.++++.++|++|+.+.+.-..     ...+...+.--.-
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-----~~~~~~~~fEKAY   87 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-----LLVINSFFFEKAY   87 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-----hhhcchhhHHHHH
Confidence            334445567889999999999998654  456677788888889999999999966655321     1111111111122


Q ss_pred             HHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChh
Q 006010          201 TVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT-PVTFNVLINGLCKNGELG  279 (664)
Q Consensus       201 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~  279 (664)
                      +..+.+..++|+..++-..    +.|..+...-...+.+.|++++|+++|+.+.+.+.+-- ...-..++.+    +---
T Consensus        88 c~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l  159 (652)
T KOG2376|consen   88 CEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAAL  159 (652)
T ss_pred             HHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhh
Confidence            3447899999999998333    22444666777888899999999999999977653311 1111111111    1011


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 006010          280 RAAKLVDNMFLKGCLPNEVTYNTL---IHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLM  356 (664)
Q Consensus       280 ~a~~~~~~~~~~g~~p~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  356 (664)
                      .+. +   +......| ..+|..+   ...+...|++.+|+++++...+.+..           .+ ..++.. -..+-.
T Consensus       160 ~~~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l-~~~d~~-eEeie~  221 (652)
T KOG2376|consen  160 QVQ-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KL-EDEDTN-EEEIEE  221 (652)
T ss_pred             hHH-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hh-cccccc-hhhHHH
Confidence            111 1   22222222 2234333   33556789999999999888443200           00 000000 000000


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhcCChhH--HHHHH------
Q 006010          357 SMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALID---GLCRVGKPDE--AEEIL------  425 (664)
Q Consensus       357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~--a~~~~------  425 (664)
                      ++        ...-..+..++...|+.++|..++..+++.... |........+   +.....++-.  ++..+      
T Consensus       222 el--------~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~  292 (652)
T KOG2376|consen  222 EL--------NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK  292 (652)
T ss_pred             HH--------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHH
Confidence            00        011223334444556666666666655554322 2221111111   1111111110  11111      


Q ss_pred             ------HHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--cCCChHHHHHHHH
Q 006010          426 ------FEMINNGCAANAFTY-SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLC--EDGKLREARMVWT  496 (664)
Q Consensus       426 ------~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~  496 (664)
                            ..+...  ....... +.++..|  .+..+.+.++.......  .|. ..+..++....  +...+.+|.+++.
T Consensus       293 l~~~~l~~Ls~~--qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~  365 (652)
T KOG2376|consen  293 LAEFLLSKLSKK--QKQAIYRNNALLALF--TNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLL  365 (652)
T ss_pred             hHHHHHHHHHHH--HHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence                  111110  0011111 2222222  23334444443332211  122 23333333322  2235778888887


Q ss_pred             HHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh------cCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006010          497 QMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC------LEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSM  570 (664)
Q Consensus       497 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  570 (664)
                      ..-+....-...+...++......|+++.|.+++...+.      .+.+.  .+.+...+...+.+.++-+-|..++.+.
T Consensus       366 ~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~A  443 (652)
T KOG2376|consen  366 QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSA  443 (652)
T ss_pred             HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHH
Confidence            776653222245666777788899999999999982210      22233  3345556777788888877788888777


Q ss_pred             HHC--CCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 006010          571 MDR--GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRP  648 (664)
Q Consensus       571 ~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  648 (664)
                      +..  .-.+.......++.-                 .+..-.+.|+-++|..+++++.+. .++|..+...++.+|++.
T Consensus       444 i~~~~~~~t~s~~l~~~~~~-----------------aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  444 IKWWRKQQTGSIALLSLMRE-----------------AAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL  505 (652)
T ss_pred             HHHHHHhcccchHHHhHHHH-----------------HhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc
Confidence            742  112222333333332                 222256679999999999999986 477889999999998876


Q ss_pred             chHHHHHH
Q 006010          649 KRIQAAIN  656 (664)
Q Consensus       649 g~~~~A~~  656 (664)
                      . .+.|..
T Consensus       506 d-~eka~~  512 (652)
T KOG2376|consen  506 D-PEKAES  512 (652)
T ss_pred             C-HHHHHH
Confidence            3 444444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.39  E-value=5.5e-11  Score=105.56  Aligned_cols=234  Identities=12%  Similarity=0.097  Sum_probs=187.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHH
Q 006010          335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVV-YSALIDGLC  413 (664)
Q Consensus       335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~  413 (664)
                      -+.+.++|.+.|-+.+|.+.++...+..  |-..+|..|-.+|.+..+++.|+.++.+-.+.  .|..+| ...+...+-
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence            3567888899999999998888877764  34557777888899999999999998887765  344444 445666777


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 006010          414 RVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARM  493 (664)
Q Consensus       414 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  493 (664)
                      ..++.++|.++++...+.. +.++.....+...|.-.++++-|+.+++++...| ..+...|+.+.-+|.-.++++-++.
T Consensus       302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHH
Confidence            8889999999999988874 6677777788888888999999999999999988 5678888888888888999999999


Q ss_pred             HHHHHHhCCCCcCH--HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          494 VWTQMLSRGCKPDV--VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       494 ~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      .|++.+..-..|+.  .+|-.+.......|++.-|.+.|+-++..++.   +...++.|.-.-.+.|++++|..+++...
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~---h~ealnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ---HGEALNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc---hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence            99988876555553  57888888888899999999999988643333   56678888888889999999999999888


Q ss_pred             HCCCCCCH
Q 006010          572 DRGCDPDL  579 (664)
Q Consensus       572 ~~~~~p~~  579 (664)
                      .  +.|+.
T Consensus       457 s--~~P~m  462 (478)
T KOG1129|consen  457 S--VMPDM  462 (478)
T ss_pred             h--hCccc
Confidence            6  56654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.39  E-value=3.1e-10  Score=105.52  Aligned_cols=199  Identities=13%  Similarity=0.083  Sum_probs=111.2

Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 006010           83 DSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLN  162 (664)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  162 (664)
                      ...+..+...+...|++++|...++++.... +.+...+..++..+...|++++|++.|++....  .+.+...+..+..
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~  107 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence            4456666666677777777777777666554 224455666666666677777777777666543  2334455666666


Q ss_pred             HHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006010          163 VIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENR  242 (664)
Q Consensus       163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  242 (664)
                      .+...|++++|.+.++.+....  ........+..+...+...|++++|.+.+++..... +.+...+..+...+...|+
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDP--LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence            6666677777777666665411  011122334445555555566666666665555442 2234455555555555555


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          243 LDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      +++|...+++.... .+.+...+..+...+...|+.++|..+.+.+
T Consensus       185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            55555555555443 1233444444455555555555555555444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.38  E-value=2.6e-09  Score=107.63  Aligned_cols=83  Identities=18%  Similarity=0.263  Sum_probs=48.2

Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006010          329 MPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSAL  408 (664)
Q Consensus       329 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  408 (664)
                      .|++.+|..++++-...|+.+.|..++.+|.+.|++.+..-|-.++-+   .++...+..+++-|.+.|+.|+..|+...
T Consensus       201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady  277 (1088)
T KOG4318|consen  201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY  277 (1088)
T ss_pred             CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence            355666666666666666666666666666666665555544444433   55555555666666666666666666555


Q ss_pred             HHHHHh
Q 006010          409 IDGLCR  414 (664)
Q Consensus       409 i~~~~~  414 (664)
                      +..+..
T Consensus       278 vip~l~  283 (1088)
T KOG4318|consen  278 VIPQLS  283 (1088)
T ss_pred             HHhhhc
Confidence            544444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.38  E-value=4.6e-08  Score=98.35  Aligned_cols=293  Identities=18%  Similarity=0.167  Sum_probs=166.9

Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 006010          161 LNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE  240 (664)
Q Consensus       161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  240 (664)
                      ...+...|++++|++.++...+    .+.............+.+.|+.++|..++..+++++ +.+..-|..+..+..-.
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~----~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEK----QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhh----hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhh
Confidence            3344555666666665555432    122223344445555555666666666666665554 33333333333333211


Q ss_pred             -----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006010          241 -----NRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELG-RAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLD  314 (664)
Q Consensus       241 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~  314 (664)
                           .+.+...++++++...-  |.......+.-.+.....+. .+...+..+..+|++   .+|+.+-..|....+.+
T Consensus        86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~  160 (517)
T PF12569_consen   86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA  160 (517)
T ss_pred             cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence                 13445555666554432  22222222211111111222 233444455555543   23444444444444444


Q ss_pred             HHHHHHHHHHHC----C----------CCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006010          315 KAVSLLDRMVAS----K----------CMPNEV--TYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLF  378 (664)
Q Consensus       315 ~a~~~~~~~~~~----~----------~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  378 (664)
                      -..+++......    +          -+|...  ++..+...|...|++++|++.+++..+..+. ....|..-...+-
T Consensus       161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilK  239 (517)
T PF12569_consen  161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence            444444444321    1          123332  3455677788889999999999988887543 4667888888888


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHhc
Q 006010          379 KEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANA--------FTYSSLMKGFFES  450 (664)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~  450 (664)
                      ..|++++|.+.++.....+.. |...-+..+..+.+.|++++|.+++....+.+..|..        ........+|.+.
T Consensus       240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~  318 (517)
T PF12569_consen  240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ  318 (517)
T ss_pred             HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988887654 7777777788888899999999988888776532221        1224456678888


Q ss_pred             CChHHHHHHHHHHHH
Q 006010          451 GKGHKAVEIWKDMAK  465 (664)
Q Consensus       451 ~~~~~a~~~~~~~~~  465 (664)
                      |++..|++.|..+.+
T Consensus       319 ~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  319 GDYGLALKRFHAVLK  333 (517)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            888888877766654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK12370 invasion protein regulator; Provisional

Probab=99.38  E-value=7e-10  Score=115.62  Aligned_cols=251  Identities=12%  Similarity=0.044  Sum_probs=165.8

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH---------cCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHH
Q 006010          132 HLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ---------EGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKT  201 (664)
Q Consensus       132 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~  201 (664)
                      +.+++|+..|++.++.  .+.+...|..+..++..         .+++++|...++++++     ..| +...+..+...
T Consensus       275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~-----ldP~~~~a~~~lg~~  347 (553)
T PRK12370        275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE-----LDHNNPQALGLLGLI  347 (553)
T ss_pred             HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh-----cCCCCHHHHHHHHHH
Confidence            4567888888888764  33455666666655442         2347889999988887     333 45577777778


Q ss_pred             HHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010          202 VCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRA  281 (664)
Q Consensus       202 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  281 (664)
                      +...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.+.. +...+..++..+...|++++|
T Consensus       348 ~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA  425 (553)
T PRK12370        348 NTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDA  425 (553)
T ss_pred             HHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHH
Confidence            888899999999999888775 556777888888888899999999999988876422 222333344456667888999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          282 AKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER  361 (664)
Q Consensus       282 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  361 (664)
                      ...++++.....+-+...+..+..++...|+.++|...++++.... +.+....+.+...|+..|  +.+...++.+.+.
T Consensus       426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~  502 (553)
T PRK12370        426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLES  502 (553)
T ss_pred             HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence            9988887765322244556777778888899999999888876541 223334455555666666  4666666665543


Q ss_pred             C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006010          362 K-FHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKG  397 (664)
Q Consensus       362 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  397 (664)
                      . -.+....+  +-..+.-.|+.+.+..+ +++.+.+
T Consensus       503 ~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        503 EQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             hhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            1 11111222  33334445666666555 7776653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.37  E-value=7.7e-09  Score=105.56  Aligned_cols=181  Identities=13%  Similarity=0.085  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010          384 EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDM  463 (664)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  463 (664)
                      ..|+..+.+..+.. ..+..+|+.|.-. ...|++.-+...|-+.+... +....+|..+.-.+.+..+++.|...|...
T Consensus       800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~  876 (1238)
T KOG1127|consen  800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV  876 (1238)
T ss_pred             HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence            45677777666542 2356667666554 55677777777776666553 556677777777888888889998888888


Q ss_pred             HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH--HH--hCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHH-------
Q 006010          464 AKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQ--ML--SRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNE-------  532 (664)
Q Consensus       464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~--~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-------  532 (664)
                      .... |.+...|-.........|+.-++..+|..  ..  ..|-.|+..-|.+........|+.++-+...+.       
T Consensus       877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a  955 (1238)
T KOG1127|consen  877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA  955 (1238)
T ss_pred             hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence            7765 55666676655555677777777777765  22  223345544454444455566665554333322       


Q ss_pred             ---hhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          533 ---MLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       533 ---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                         .+.   +.+-+...|...+....+.+.+.+|.....+..
T Consensus       956 l~~yf~---~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  956 LSYYFL---GHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             HHHHHh---cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence               221   222245567777777777777777777777655

>PRK12370 invasion protein regulator; Provisional

Probab=99.37  E-value=9.4e-10  Score=114.68  Aligned_cols=215  Identities=13%  Similarity=0.030  Sum_probs=141.3

Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006010          348 AVDGARVLMSMEERKFHVNEYIYSTLISGLF---------KEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKP  418 (664)
Q Consensus       348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  418 (664)
                      .++|...+++..+..+. +...+..+..++.         ..+++++|...+++..+.+.. +...+..+...+...|++
T Consensus       277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Confidence            45666666666665433 3444444444333         224477888888888776433 566777777777788888


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 006010          419 DEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQM  498 (664)
Q Consensus       419 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  498 (664)
                      ++|...++++++.+ +.+...+..+...+...|++++|...+++..+.+ |.+...+..++..+...|++++|...++++
T Consensus       355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~  432 (553)
T PRK12370        355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDEL  432 (553)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence            88888888888775 5566777778888888888888888888888766 223333333444456678888888888887


Q ss_pred             HhCCCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          499 LSRGCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       499 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      .... .| +...+..+..++...|++++|...+.++....+   .+...++.+...|...|  ++|...++++.+
T Consensus       433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI---TGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc---hhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            7643 23 344566677777888888888888887642211   13344555556666666  467776766664

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.35  E-value=4.3e-08  Score=100.29  Aligned_cols=444  Identities=13%  Similarity=0.068  Sum_probs=267.9

Q ss_pred             cchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006010           99 FKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYN  178 (664)
Q Consensus        99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  178 (664)
                      ...+...|-+..+..+. -..+|..+...|....+...|.+-|++..+.  ...+..++..+...|++..+++.|..+.-
T Consensus       474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            55556666666665543 3447888888888888888899999888654  45567788889999999999999988844


Q ss_pred             HHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006010          179 HIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGC  258 (664)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  258 (664)
                      ..-+..+.+  .-...|..+.-.|.+.++...|..-|+...+.. +.|...|..++.+|.+.|++..|+++|.++...  
T Consensus       551 ~~~qka~a~--~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--  625 (1238)
T KOG1127|consen  551 RAAQKAPAF--ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--  625 (1238)
T ss_pred             HHhhhchHH--HHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence            433211100  111233345556777888999999999888775 567888999999999999999999999888764  


Q ss_pred             CCCHHHHHHH--HHHHHhcCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----
Q 006010          259 FPTPVTFNVL--INGLCKNGELGRAAKLVDNMFLK------GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVA-----  325 (664)
Q Consensus       259 ~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~~------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----  325 (664)
                      .|+. .|...  .-..+..|.+.+|+..+......      +..--..++..+...+...|-..++...+++.++     
T Consensus       626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~  704 (1238)
T KOG1127|consen  626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS  704 (1238)
T ss_pred             CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            2332 23222  23456778899998888876543      1111223343344444444544445555444332     


Q ss_pred             --CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---H---HHHHHHHHHHHcC
Q 006010          326 --SKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKA---E---DAMKLWKQMMEKG  397 (664)
Q Consensus       326 --~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~  397 (664)
                        +....+...|-.+.++|          .+|-... .+ .|+......+..-.-..+..   |   -+.+.+-.-.+  
T Consensus       705 l~h~~~~~~~~Wi~asdac----------~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--  770 (1238)
T KOG1127|consen  705 LIHSLQSDRLQWIVASDAC----------YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--  770 (1238)
T ss_pred             HHHhhhhhHHHHHHHhHHH----------HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence              21122333333322222          2222222 11 11211111111111111111   1   01111111111  


Q ss_pred             CCCCHHHHHHHHHHHHh----c----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 006010          398 CKPNTVVYSALIDGLCR----V----GKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCV  469 (664)
Q Consensus       398 ~~~~~~~~~~li~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  469 (664)
                      ...+..+|..++..|.+    .    .+...|...+.+.++.. ..+..+|+.|.-. ...|.+.-+...|-+-.... +
T Consensus       771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p  847 (1238)
T KOG1127|consen  771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-P  847 (1238)
T ss_pred             HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-c
Confidence            11234555555554433    1    23346778888877763 4466777777655 66677877777776665554 5


Q ss_pred             CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHH--hhhcCCCCCCCHhHH
Q 006010          470 YNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNE--MLCLEPKSQPDVFTY  547 (664)
Q Consensus       470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~  547 (664)
                      .+..+|..+...+....+++.|...|...+... +.+...|..........|+.-++..+|..  .++...+..++...|
T Consensus       848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw  926 (1238)
T KOG1127|consen  848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW  926 (1238)
T ss_pred             cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence            667788888888999999999999999988753 33456777776667788998899998876  444555666676666


Q ss_pred             HHHHHHHHHcCChhHHHHHHHH
Q 006010          548 NILLNALCKQSNISHSIDLLNS  569 (664)
Q Consensus       548 ~~l~~~~~~~g~~~~A~~~~~~  569 (664)
                      -.........|+.++-+...++
T Consensus       927 ~c~te~h~~Ng~~e~~I~t~~k  948 (1238)
T KOG1127|consen  927 LCATEIHLQNGNIEESINTARK  948 (1238)
T ss_pred             HHHHHHHHhccchHHHHHHhhh
Confidence            6666666677776665544443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.35  E-value=8.2e-10  Score=102.63  Aligned_cols=166  Identities=17%  Similarity=0.165  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010          403 VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGL  482 (664)
Q Consensus       403 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  482 (664)
                      ..+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~  109 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            334444555555555555555555555442 3344455555555566666666666666555543 33444555555566


Q ss_pred             HcCCChHHHHHHHHHHHhCCCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChh
Q 006010          483 CEDGKLREARMVWTQMLSRGCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNIS  561 (664)
Q Consensus       483 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  561 (664)
                      ...|++++|.+.++++......+ ....+..+...+...|++++|...+++++...+.   +...+..+...+...|+++
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---RPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---ChHHHHHHHHHHHHcCCHH
Confidence            66666666666666665432111 2334555566666667777777777666543222   3445556666666667777


Q ss_pred             HHHHHHHHHHHC
Q 006010          562 HSIDLLNSMMDR  573 (664)
Q Consensus       562 ~A~~~~~~~~~~  573 (664)
                      +|...++++.+.
T Consensus       187 ~A~~~~~~~~~~  198 (234)
T TIGR02521       187 DARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHHh
Confidence            777776666653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.33  E-value=2.3e-10  Score=101.75  Aligned_cols=236  Identities=11%  Similarity=0.080  Sum_probs=197.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK  445 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  445 (664)
                      |-.--+.+..+|.+.|.+.+|.+.++...++  .|-+.||..+-.+|.+..+++.|+.++.+-++. ++-++.....+.+
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR  298 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR  298 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence            4445578899999999999999999998887  466778888999999999999999999999887 3667777778888


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010          446 GFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE  525 (664)
Q Consensus       446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  525 (664)
                      .+...++.++|.++++...+.. +.++....++...|.-.++++-|+..+.++++.|+. +...|+.+.-+|.-.+++|-
T Consensus       299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~  376 (478)
T KOG1129|consen  299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL  376 (478)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence            9999999999999999999876 667778888888999999999999999999999964 77899999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHhhhhhccCCCCchhhhH
Q 006010          526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL-VTCNIFLTALKEKLEAPQDGTDFLN  604 (664)
Q Consensus       526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~  604 (664)
                      ++.-|+++++.......-...|..+.......|++.-|.+.|+-.+..  .|+. ..++.+.                  
T Consensus       377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLa------------------  436 (478)
T KOG1129|consen  377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLA------------------  436 (478)
T ss_pred             hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHH------------------
Confidence            999999996544332334557888888888999999999999988863  3333 3344333                  


Q ss_pred             HHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          605 ELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       605 ~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                         ..-.+.|+.++|..++..+...
T Consensus       437 ---vL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  437 ---VLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             ---HHHhhcCchHHHHHHHHHhhhh
Confidence               3378899999999999998764

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=2.3e-06  Score=88.08  Aligned_cols=339  Identities=15%  Similarity=0.153  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 006010          281 AAKLVDNMFLKGCL--PNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASK--CMPNEVTYGTIINGLVKLGRAVDGARVLM  356 (664)
Q Consensus       281 a~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  356 (664)
                      -.+++++....+++  .|+......+.++...+-..+-+++++++.-..  +.-+...-+.++-...+ -+.....+..+
T Consensus       966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~ 1044 (1666)
T KOG0985|consen  966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYIN 1044 (1666)
T ss_pred             HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHH
Confidence            45566666554332  355566677888888888889899998886431  11112222223222222 22333334444


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----------------------CCCCCHHHHHHHHHHHHh
Q 006010          357 SMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEK----------------------GCKPNTVVYSALIDGLCR  414 (664)
Q Consensus       357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------~~~~~~~~~~~li~~~~~  414 (664)
                      ++..-+.+       .+...+...+-+++|..+|++....                      .+ ..+..|+.+..+-.+
T Consensus      1045 rLdnyDa~-------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1045 RLDNYDAP-------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQ 1116 (1666)
T ss_pred             HhccCCch-------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHh
Confidence            43322111       1112222233334444433332100                      01 145567777777777


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 006010          415 VGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMV  494 (664)
Q Consensus       415 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  494 (664)
                      .|...+|++-|-++      .|+..|..+++...+.|.+++-.+++....+..-.|..  -+.|+-+|++.++..+..++
T Consensus      1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred             cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHH
Confidence            77777777655432      36677777778878888888877777766665433333  34577777777776665444


Q ss_pred             HHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010          495 WTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG  574 (664)
Q Consensus       495 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  574 (664)
                      .       .-|+......+.+-|...|.++.|.-+|...           ..|..+...+...|++..|.+.-+++-   
T Consensus      1189 i-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-----------SN~a~La~TLV~LgeyQ~AVD~aRKAn--- 1247 (1666)
T KOG0985|consen 1189 I-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-----------SNFAKLASTLVYLGEYQGAVDAARKAN--- 1247 (1666)
T ss_pred             h-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHhhhcc---
Confidence            3       2467666777777777777787777777644           347777777888888888877666554   


Q ss_pred             CCCCHHHHHHHHHhhhhhccCC--C-------CchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCC-CChHHHHHHHHH
Q 006010          575 CDPDLVTCNIFLTALKEKLEAP--Q-------DGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLS-PQTSTWERVVQE  644 (664)
Q Consensus       575 ~~p~~~~~~~ll~~~~~~~~~~--~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~  644 (664)
                         +..||..+-.+|.+..+..  +       --.+-+++|..-|-..|.+++-+.+++....  +. .-...+..|+..
T Consensus      1248 ---s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1248 ---STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAIL 1322 (1666)
T ss_pred             ---chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHHH
Confidence               4457777777775443210  0       0012256788889999999999998888763  33 344777777777


Q ss_pred             hc--ccchHHHHHHHHHhhh
Q 006010          645 LC--RPKRIQAAINKCWSNL  662 (664)
Q Consensus       645 ~~--~~g~~~~A~~~~~~~l  662 (664)
                      |.  +..+.-|=++.||..+
T Consensus      1323 Yskykp~km~EHl~LFwsRv 1342 (1666)
T KOG0985|consen 1323 YSKYKPEKMMEHLKLFWSRV 1342 (1666)
T ss_pred             HHhcCHHHHHHHHHHHHHhc
Confidence            75  4567888888888754

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.26  E-value=7.1e-09  Score=88.23  Aligned_cols=206  Identities=13%  Similarity=0.088  Sum_probs=153.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 006010          405 YSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE  484 (664)
Q Consensus       405 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  484 (664)
                      ...+.-.|...|+...|..-++++++.. +.+..++..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            4446667888888888888888888875 5667788888888888888888888888888876 5566778888888888


Q ss_pred             CCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHH
Q 006010          485 DGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHS  563 (664)
Q Consensus       485 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  563 (664)
                      .|++++|...|++....-.-|. ..+|..+..+..+.|+.+.|..+|++.+..++..   ......+.....+.|++..|
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~---~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF---PPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC---ChHHHHHHHHHHhcccchHH
Confidence            8899999998888886422222 3578888888888899999999999887666653   33455677777888899999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHH
Q 006010          564 IDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWE  639 (664)
Q Consensus       564 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  639 (664)
                      ..++++....+. ++..+....+..                     -...|+-+.+.++=.++.+.  .|.+.-+.
T Consensus       193 r~~~~~~~~~~~-~~A~sL~L~iri---------------------ak~~gd~~~a~~Y~~qL~r~--fP~s~e~q  244 (250)
T COG3063         193 RLYLERYQQRGG-AQAESLLLGIRI---------------------AKRLGDRAAAQRYQAQLQRL--FPYSEEYQ  244 (250)
T ss_pred             HHHHHHHHhccc-ccHHHHHHHHHH---------------------HHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence            888888887644 666665555554                     55678877777777777663  44444433

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=4.4e-06  Score=86.03  Aligned_cols=534  Identities=11%  Similarity=0.160  Sum_probs=277.7

Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH
Q 006010           87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ  166 (664)
Q Consensus        87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (664)
                      ..++..++..|+++.+.-..   .+.|..|+   |..+++...+ -..+++.++...+....+   .....+.+...+..
T Consensus       485 ~KVi~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme  554 (1666)
T KOG0985|consen  485 AKVIQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE---PLADIEQIVDLFME  554 (1666)
T ss_pred             HHHHHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC---CcccHHHHHHHHHH
Confidence            34567777777777665433   33444433   4455555545 568888888877765432   22234555566666


Q ss_pred             cCCHhHHHHHHHHHHhcccCCCCcCHH------------------------------HHHHHHHHHHhcCChhHHHHHHh
Q 006010          167 EGLYHRALEFYNHIVNAKHMNILPNTL------------------------------TFNLVIKTVCRLGLVDNAIQLFR  216 (664)
Q Consensus       167 ~~~~~~A~~~~~~~~~~~~~~~~~~~~------------------------------~~~~ll~~~~~~g~~~~A~~~~~  216 (664)
                      .+..+.+..+.-.+++    +..|+..                              -+..+...|.+.|-..+|++.+.
T Consensus       555 ~N~iQq~TSFLLdaLK----~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehyt  630 (1666)
T KOG0985|consen  555 LNLIQQCTSFLLDALK----LNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYT  630 (1666)
T ss_pred             HHhhhhhHHHHHHHhc----CCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcc
Confidence            6666666666655554    1223222                              12344455666666666666666


Q ss_pred             hcccCCCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          217 EMPVRNCEPDIYTYCT-----LMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK  291 (664)
Q Consensus       217 ~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  291 (664)
                      .+...  +. ....+.     .+-.|.-.-.++++.+.++.|...++..+..+.-.+..-|...=-.+..+++|+....-
T Consensus       631 Dl~DI--KR-~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~  707 (1666)
T KOG0985|consen  631 DLYDI--KR-VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSY  707 (1666)
T ss_pred             cHHHH--HH-HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccc
Confidence            55322  11 111111     12334444456677777777777666666666666666666666666777777765432


Q ss_pred             -----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH------------HHC---------------CCCCChh
Q 006010          292 -----------GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRM------------VAS---------------KCMPNEV  333 (664)
Q Consensus       292 -----------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~------------~~~---------------~~~~~~~  333 (664)
                                 +..-|+...-..|.+.|+.|++.+..++.++-            .+.               ++.+|..
T Consensus       708 eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlv  787 (1666)
T KOG0985|consen  708 EGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLV  787 (1666)
T ss_pred             hhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHH
Confidence                       12335555556677777788877777766542            111               1111211


Q ss_pred             hHH------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-------------HHHHHHHHhcCChHHHHHHHHHHH
Q 006010          334 TYG------TIINGLVKLGRAVDGARVLMSMEERKFHVNEYIY-------------STLISGLFKEGKAEDAMKLWKQMM  394 (664)
Q Consensus       334 ~~~------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~  394 (664)
                      .|.      ..|..|...-+....-.+...+.+-+  -+....             ..+..-.-+.++..--...++...
T Consensus       788 lYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i  865 (1666)
T KOG0985|consen  788 LYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVD--CSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLI  865 (1666)
T ss_pred             HHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCC--CcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            110      11222221111000000000000000  000000             011111112233333333444444


Q ss_pred             HcCCCCCHHHHHHHHHHHHh------------------------------------------------------------
Q 006010          395 EKGCKPNTVVYSALIDGLCR------------------------------------------------------------  414 (664)
Q Consensus       395 ~~~~~~~~~~~~~li~~~~~------------------------------------------------------------  414 (664)
                      ..|.. |..+++++...|..                                                            
T Consensus       866 ~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aR  944 (1666)
T KOG0985|consen  866 QEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQAR  944 (1666)
T ss_pred             hccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHH
Confidence            44433 44444444333322                                                            


Q ss_pred             ----cCChhHHHH-----------HHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHH
Q 006010          415 ----VGKPDEAEE-----------ILFEMINNGC--AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN--EVCY  475 (664)
Q Consensus       415 ----~~~~~~a~~-----------~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~  475 (664)
                          ..+.+.=.+           +.++..+.++  ..|+...+..+.++...+-+.+-+++++++.-.....+  ...-
T Consensus       945 Ylv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen  945 YLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred             HHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence                222111111           1122222221  23556666777778888888888888887754322111  0011


Q ss_pred             HH---------------------------HHHHHHcCCChHHHHHHHHHHHhCC---------------------CCcCH
Q 006010          476 SV---------------------------LIHGLCEDGKLREARMVWTQMLSRG---------------------CKPDV  507 (664)
Q Consensus       476 ~~---------------------------l~~~~~~~g~~~~A~~~~~~~~~~~---------------------~~p~~  507 (664)
                      +.                           +.......+-+++|..+|++.-..+                     ---.+
T Consensus      1025 nLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p 1104 (1666)
T KOG0985|consen 1025 NLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEP 1104 (1666)
T ss_pred             hhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCCh
Confidence            11                           2222334455667777766432110                     01234


Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLT  587 (664)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~  587 (664)
                      ..|..+..+-.+.|.+.+|++-|-++     +   |+..|..+++...+.|+|++-++++..+++....|...+-..  -
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika-----d---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi--~ 1174 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----D---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELI--F 1174 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc-----C---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHH--H
Confidence            57888888988999999999888665     2   667899999999999999999999998888766776554332  2


Q ss_pred             hhhhhc--cC-----CCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHH
Q 006010          588 ALKEKL--EA-----PQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCW  659 (664)
Q Consensus       588 ~~~~~~--~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  659 (664)
                      ++++..  ..     ......-+..+|+.|...|.++.|.-++...         ..|..|...+...|.++.|.+.-+
T Consensus      1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred             HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence            222211  00     0011122457788888888888887666554         245566666666666666665433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=3.8e-07  Score=87.57  Aligned_cols=441  Identities=16%  Similarity=0.098  Sum_probs=247.6

Q ss_pred             HHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010           89 LIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG  168 (664)
Q Consensus        89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (664)
                      -.++....|+++.|...|...+...+. +...|..-..+|+..|++++|++--.+-.+.  .|.-+..|+-.+.++.-.|
T Consensus         8 kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    8 KGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence            456677788888888888888877754 6667778888888888888888876665443  2333567888888888888


Q ss_pred             CHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCh-hHH
Q 006010          169 LYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRL-DEA  246 (664)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a  246 (664)
                      +|++|+.-|.+-++     ..| +...+.-+..++    ..+.+.     +..   ..++..|..+..--....-. +.+
T Consensus        85 ~~~eA~~ay~~GL~-----~d~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~  147 (539)
T KOG0548|consen   85 DYEEAILAYSEGLE-----KDPSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPA  147 (539)
T ss_pred             cHHHHHHHHHHHhh-----cCCchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHH
Confidence            88888888888776     233 344555555554    111111     111   11233333332211111110 111


Q ss_pred             -HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH-----HHHcC-------CCCCHHHHHHHHHHHHhcCCh
Q 006010          247 -VLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDN-----MFLKG-------CLPNEVTYNTLIHGLCLKGNL  313 (664)
Q Consensus       247 -~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~g-------~~p~~~~~~~l~~~~~~~g~~  313 (664)
                       ..+++.+...   |+.      +..|.....+..+.-.+..     +...|       ..|..    ......-..++.
T Consensus       148 ~~~~l~~~~~~---p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~  214 (539)
T KOG0548|consen  148 YVKILEIIQKN---PTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCK----QEHNGFPIIEDN  214 (539)
T ss_pred             HHHHHHHhhcC---cHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCccc----ccCCCCCccchh
Confidence             1222222221   111      1111111111111111110     00111       11110    000000000000


Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010          314 DKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQM  393 (664)
Q Consensus       314 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  393 (664)
                      .+-.+     .    ..-..-...+.+...+..++..+.+.+....+..  -+..-++....+|...|.+..++....+.
T Consensus       215 ~ee~~-----~----k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a  283 (539)
T KOG0548|consen  215 TEERR-----V----KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKA  283 (539)
T ss_pred             HHHHH-----H----HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHH
Confidence            00000     0    0011223455666667777788887777777664  25555666677788888877777777776


Q ss_pred             HHcCCCCCHHHH-------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010          394 MEKGCKPNTVVY-------SALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKN  466 (664)
Q Consensus       394 ~~~~~~~~~~~~-------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  466 (664)
                      .+.|-. ...-|       ..+..+|.+.++++.+..+|.+.+.....|+.         ..+....+++.+..+...-.
T Consensus       284 ~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~  353 (539)
T KOG0548|consen  284 VEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI  353 (539)
T ss_pred             HHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh
Confidence            665432 11122       22334566677888888888887665323221         22334445555555544433


Q ss_pred             CCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh
Q 006010          467 NCVYNE-VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF  545 (664)
Q Consensus       467 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  545 (664)
                      +  |.. .-...-...+.+.|++..|+..|.+++... +-|...|.....+|.+.|.+..|++-.+..+++++.   ...
T Consensus       354 ~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~---~~k  427 (539)
T KOG0548|consen  354 N--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN---FIK  427 (539)
T ss_pred             C--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch---HHH
Confidence            3  222 122233667888999999999999999874 446788999999999999999999998888654332   334


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhh
Q 006010          546 TYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKE  591 (664)
Q Consensus       546 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~  591 (664)
                      .|..-..++....+|++|.+.|++.++  ..|+..-+..-+.-|..
T Consensus       428 gy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  428 AYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHH
Confidence            455555566667789999999999988  56777766666666543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.23  E-value=5.5e-09  Score=88.86  Aligned_cols=192  Identities=17%  Similarity=0.090  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHH
Q 006010          439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLC  518 (664)
Q Consensus       439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  518 (664)
                      +...|.-.|...|+...|..-+++.++.+ |.+..+|..+...|.+.|..+.|.+-|++.+... +-+..+.|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            45567788999999999999999999987 5567789999999999999999999999999863 234578999999999


Q ss_pred             HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHhhhhhccCCC
Q 006010          519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL-VTCNIFLTALKEKLEAPQ  597 (664)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~  597 (664)
                      ..|++++|...|++++ .+|...-...+|..+.-+..+.|+.+.|...|++.++  ..|+. .+...+...         
T Consensus       115 ~qg~~~eA~q~F~~Al-~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~---------  182 (250)
T COG3063         115 AQGRPEEAMQQFERAL-ADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARL---------  182 (250)
T ss_pred             hCCChHHHHHHHHHHH-hCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHH---------
Confidence            9999999999999996 4554444566888999999999999999999999998  45543 344444444         


Q ss_pred             CchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHH
Q 006010          598 DGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINK  657 (664)
Q Consensus       598 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  657 (664)
                                  ..+.|++-.|..+++.....+. ++.......++.-.+.|+.+.|-++
T Consensus       183 ------------~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y  229 (250)
T COG3063         183 ------------HYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY  229 (250)
T ss_pred             ------------HHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence                        8999999999999999988754 8888888888888899998888764

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=3.6e-08  Score=86.90  Aligned_cols=314  Identities=12%  Similarity=0.076  Sum_probs=159.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHH-HH
Q 006010          121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNL-VI  199 (664)
Q Consensus       121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-ll  199 (664)
                      +..++..+.+..++++|++++....+.  .+.+....+.+..+|....++..|.++|+++..     ..|...-|.. -.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-----l~P~~~qYrlY~A   85 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ-----LHPELEQYRLYQA   85 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hChHHHHHHHHHH
Confidence            344444455666677777776665443  233555666666777777777777777777644     3455444432 23


Q ss_pred             HHHHhcCChhHHHHHHhhcccCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006010          200 KTVCRLGLVDNAIQLFREMPVRNCEPDIYT--YCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGE  277 (664)
Q Consensus       200 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  277 (664)
                      ..+.+.+.+..|+.+...|...   +....  ...-.......+++..+..++++....|   +..+.+...-...+.|+
T Consensus        86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq  159 (459)
T KOG4340|consen   86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ  159 (459)
T ss_pred             HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence            3445566677777776666532   11111  1111122234566666777766665432   33344444444556677


Q ss_pred             hhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH----HHHHHHHhcCChhHHH
Q 006010          278 LGRAAKLVDNMFLK-GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYG----TIINGLVKLGRAVDGA  352 (664)
Q Consensus       278 ~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~  352 (664)
                      ++.|.+-|+...+- |.. ....|+..+.. .+.|+++.|+++..+++++|++..+..--    ..++    .+.+..-.
T Consensus       160 yEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~  233 (459)
T KOG4340|consen  160 YEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTL  233 (459)
T ss_pred             HHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchH
Confidence            77777777776554 333 34456554443 34567777777777777766543221100    0000    00000000


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006010          353 RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEK-GCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINN  431 (664)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  431 (664)
                      .+....       -...+|.-...+.+.|+++.|.+.+-+|.-. ....|++|...+.-. -..+++.+..+-+.-++..
T Consensus       234 ~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~  305 (459)
T KOG4340|consen  234 VLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ  305 (459)
T ss_pred             HHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc
Confidence            000000       0113333344455666777776666666432 123355555443322 1233444444444444444


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006010          432 GCAANAFTYSSLMKGFFESGKGHKAVEIWKD  462 (664)
Q Consensus       432 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  462 (664)
                      + |-...||..++-.|++..-++-|-.++.+
T Consensus       306 n-PfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  306 N-PFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             C-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            3 34456666666677776666666665543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.21  E-value=3e-09  Score=105.25  Aligned_cols=243  Identities=15%  Similarity=0.057  Sum_probs=121.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc----CC-CCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhccc---CC
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE----FH-CKRTVK-SFNSVLNVIIQEGLYHRALEFYNHIVNAKH---MN  187 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~  187 (664)
                      ...+...+...|...|+++.|..++...++.    .| ..|.+. ..+.+...|...+++.+|..+|+.++....   ..
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            3334444555555555555555555554432    11 012222 233355555555666555555555543210   01


Q ss_pred             CCcC-HHHHHHHHHHHHhcCChhHHHHHHhhcccC-----C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 006010          188 ILPN-TLTFNLVIKTVCRLGLVDNAIQLFREMPVR-----N-CEPDIY-TYCTLMDGLCKENRLDEAVLLLDEMQVD---  256 (664)
Q Consensus       188 ~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~---  256 (664)
                      ..|. ..+++.|..+|.+.|++++|...++...+.     | ..|.+. .++.+...++..+++++|..++....+.   
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~  357 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD  357 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            1222 235555555666666655555555443210     1 012222 2455555666666666666666544321   


Q ss_pred             CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010          257 GCFP----TPVTFNVLINGLCKNGELGRAAKLVDNMFLK----GC--LPN-EVTYNTLIHGLCLKGNLDKAVSLLDRMVA  325 (664)
Q Consensus       257 ~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  325 (664)
                      -..+    -..+++.|...|.+.|++++|.+++++++..    +-  .+. ...++.+...|.+.+++.+|.++|.+...
T Consensus       358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~  437 (508)
T KOG1840|consen  358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD  437 (508)
T ss_pred             hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            0111    1345666666666667776666666665433    11  111 23455566666666666666666655433


Q ss_pred             C----C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010          326 S----K--CMPNEVTYGTIINGLVKLGRAVDGARVLMSME  359 (664)
Q Consensus       326 ~----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  359 (664)
                      .    |  .+-...+|..|...|...|+++.|.++.+.+.
T Consensus       438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            1    2  11223456666677777777777776666554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.20  E-value=9.2e-07  Score=87.74  Aligned_cols=313  Identities=17%  Similarity=0.122  Sum_probs=151.3

Q ss_pred             HHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006010          197 LVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNG  276 (664)
Q Consensus       197 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  276 (664)
                      ..|.+|....++++|+.+-+..   |.+.-...-.+.++++...|+-++|-++-+   ..|   |  + .+.|..|.+.|
T Consensus       562 ~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk~---sdg---d--~-laaiqlyika~  629 (1636)
T KOG3616|consen  562 EAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELKE---SDG---D--G-LAAIQLYIKAG  629 (1636)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhcc---ccC---c--c-HHHHHHHHHcC
Confidence            3456666777777777665432   222222334455566666666666554321   111   1  1 23466777777


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 006010          277 ELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLM  356 (664)
Q Consensus       277 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  356 (664)
                      .+..|.+....-.  .+..|......+..++.+..-+++|-++|+++..         +...+.+|-+..-+.+|.++-.
T Consensus       630 ~p~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielar  698 (1636)
T KOG3616|consen  630 KPAKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELAR  698 (1636)
T ss_pred             CchHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHH
Confidence            7776665443211  1223555555555555555556666666666542         1122333333333444444322


Q ss_pred             HHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006010          357 SMEERKFHVNEYI-YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA  435 (664)
Q Consensus       357 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  435 (664)
                      -.-    +...+. -.....-+...|+++.|+..|-+...         ....+.+......|.+|+.+++.+....  .
T Consensus       699 faf----p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~  763 (1636)
T KOG3616|consen  699 FAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--T  763 (1636)
T ss_pred             hhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--c
Confidence            211    101111 11122233345555555554433221         1123344445556666666666555442  2


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006010          436 NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIH  515 (664)
Q Consensus       436 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  515 (664)
                      ...-|..+.+-|...|+++.|.++|.+.-         .++-.|..|.+.|+|++|.++-.+..  |.......|..-..
T Consensus       764 ~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakae  832 (1636)
T KOG3616|consen  764 ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAE  832 (1636)
T ss_pred             ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHH
Confidence            22334555566666666666666654322         23345556666666666666554443  22222334444444


Q ss_pred             HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010          516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNS  569 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  569 (664)
                      -+-..|++.+|+++|-.+      ..|+.     .+..|-+.|..++.+++..+
T Consensus       833 dldehgkf~eaeqlyiti------~~p~~-----aiqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  833 DLDEHGKFAEAEQLYITI------GEPDK-----AIQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             hHHhhcchhhhhheeEEc------cCchH-----HHHHHHhhCcchHHHHHHHH
Confidence            455666666666666444      22332     24455566666666555554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.20  E-value=7e-09  Score=102.75  Aligned_cols=198  Identities=18%  Similarity=0.098  Sum_probs=132.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCcCH-
Q 006010          442 SLMKGFFESGKGHKAVEIWKDMAKN-----N--CVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR-----G-CKPDV-  507 (664)
Q Consensus       442 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-  507 (664)
                      .+...|...+++++|..+|+++...     |  .+.-..+++.|...|.+.|++++|...++.+.+-     | ..|.. 
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~  325 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA  325 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence            3555666677777777777666541     1  1111235666666777888877777666655431     2 12333 


Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC-CCCCC----HhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC--C
Q 006010          508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEP-KSQPD----VFTYNILLNALCKQSNISHSIDLLNSMMDR----GC--D  576 (664)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~  576 (664)
                      ..++.++..|...+++++|..++.+.+++-. ...++    ..+++.|...|.+.|++++|.+++++++..    +-  .
T Consensus       326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~  405 (508)
T KOG1840|consen  326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD  405 (508)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence            3456777888999999999999988765432 11112    347889999999999999999999999852    11  1


Q ss_pred             CC-HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc----C-CCCC-hHHHHHHHHHhcccc
Q 006010          577 PD-LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK----F-LSPQ-TSTWERVVQELCRPK  649 (664)
Q Consensus       577 p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g  649 (664)
                      +. ...++.+...                     |.+.+.+.+|.++|.+...-    | ..|+ ..+|..|+..|.+.|
T Consensus       406 ~~~~~~l~~la~~---------------------~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g  464 (508)
T KOG1840|consen  406 YGVGKPLNQLAEA---------------------YEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG  464 (508)
T ss_pred             hhhhHHHHHHHHH---------------------HHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence            11 2233444444                     88888889898888875432    2 2233 478999999999999


Q ss_pred             hHHHHHHHHHh
Q 006010          650 RIQAAINKCWS  660 (664)
Q Consensus       650 ~~~~A~~~~~~  660 (664)
                      ++++|+++...
T Consensus       465 ~~e~a~~~~~~  475 (508)
T KOG1840|consen  465 NYEAAEELEEK  475 (508)
T ss_pred             cHHHHHHHHHH
Confidence            99999987544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.19  E-value=1.8e-07  Score=92.91  Aligned_cols=200  Identities=11%  Similarity=0.009  Sum_probs=121.5

Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 006010           83 DSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVV--LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV  160 (664)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  160 (664)
                      +..|..+...+...|+.+.+...+....+.....  ...........+...|++++|.+.+++.++.  .|.+...+.. 
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-   82 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-   82 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence            4456666666777777777776666665543211  2223334445566778888888888887665  3344444442 


Q ss_pred             HHHHHHc----CCHhHHHHHHHHHHhcccCCCCcCH-HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHH
Q 006010          161 LNVIIQE----GLYHRALEFYNHIVNAKHMNILPNT-LTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMD  235 (664)
Q Consensus       161 ~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  235 (664)
                      ...+...    +....+.+.++..     ....|+. .....+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~  156 (355)
T cd05804          83 HLGAFGLGDFSGMRDHVARVLPLW-----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH  156 (355)
T ss_pred             hHHHHHhcccccCchhHHHHHhcc-----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence            2233333    3333444433331     1222332 344455566777888888888888887765 455667777788


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          236 GLCKENRLDEAVLLLDEMQVDGC-FPTP--VTFNVLINGLCKNGELGRAAKLVDNMFLK  291 (664)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~  291 (664)
                      ++...|++++|...+++...... .++.  ..|..+...+...|++++|..++++....
T Consensus       157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            88888888888888887665421 1222  23446677777888888888888876533

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=4.1e-07  Score=87.39  Aligned_cols=422  Identities=14%  Similarity=0.091  Sum_probs=254.2

Q ss_pred             ccCCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 006010           58 NAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEA  137 (664)
Q Consensus        58 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  137 (664)
                      ....+.+.|+..|..+....  ++|...|..-..+|+..|+++.|.+--...++..+. ....|.....++.-.|++++|
T Consensus        13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~eA   89 (539)
T KOG0548|consen   13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYEEA   89 (539)
T ss_pred             cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHHHH
Confidence            34567889999998776654  357888888999999999999999888888877744 666899999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHh
Q 006010          138 IRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLG-LVDNAIQLFR  216 (664)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~  216 (664)
                      +.-|.+-++.  .+.+...++.+..++.    .+.+.   ....        -+...|..+..-=...+ ..+.+....-
T Consensus        90 ~~ay~~GL~~--d~~n~~L~~gl~~a~~----~~~~~---~~~~--------~~p~~~~~l~~~p~t~~~~~~~~~~~~l  152 (539)
T KOG0548|consen   90 ILAYSEGLEK--DPSNKQLKTGLAQAYL----EDYAA---DQLF--------TKPYFHEKLANLPLTNYSLSDPAYVKIL  152 (539)
T ss_pred             HHHHHHHhhc--CCchHHHHHhHHHhhh----HHHHh---hhhc--------cCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence            9999998775  4455666777777661    11111   1111        12222222211100000 0111221111


Q ss_pred             hcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hCC-------CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010          217 EMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQ-----VDG-------CFPTPVTFNVLINGLCKNGELGRAAKL  284 (664)
Q Consensus       217 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~  284 (664)
                      +....+ +-+.       ..|..-.++..+...+....     ..|       ..|.           .+..+   ....
T Consensus       153 ~~~~~~-p~~l-------~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~~---~~~~  210 (539)
T KOG0548|consen  153 EIIQKN-PTSL-------KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEHN---GFPI  210 (539)
T ss_pred             HHhhcC-cHhh-------hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccCC---CCCc
Confidence            112221 1111       11221111112221111110     001       1111           00000   0000


Q ss_pred             HHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006010          285 VDNMFLK-GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKF  363 (664)
Q Consensus       285 ~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  363 (664)
                      ..++.+. ...--..-...+.++..+..+++.|.+-+...++..  .+..-++....+|...|.+.+.....+...+.|.
T Consensus       211 ~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr  288 (539)
T KOG0548|consen  211 IEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR  288 (539)
T ss_pred             cchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH
Confidence            0000000 000012234567777788888999999999888764  4555667777788888888888777777666554


Q ss_pred             CCCHHHHHH-------HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006010          364 HVNEYIYST-------LISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAAN  436 (664)
Q Consensus       364 ~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  436 (664)
                      . ....|+.       +..+|.+.++++.++..|.+.......|+.         ..+....+++....+...-.+... 
T Consensus       289 e-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-  357 (539)
T KOG0548|consen  289 E-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-  357 (539)
T ss_pred             H-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-
Confidence            3 2222332       334666778899999999987765444332         222334444544444433332111 


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHH
Q 006010          437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIH  515 (664)
Q Consensus       437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~  515 (664)
                      ..-...-...+.+.|++..|+..|.++++.. |.|...|.....+|.+.|.+..|+.-.+..++.  .|+ ...|..=+.
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~  434 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGA  434 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHH
Confidence            2222233667889999999999999999987 778889999999999999999999998888875  444 455666666


Q ss_pred             HHHHcCCHHHHHHHHHHhhhcC
Q 006010          516 GLCNAGSVEEALKLFNEMLCLE  537 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~  537 (664)
                      ++....+++.|.+.|++.+..+
T Consensus       435 al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  435 ALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            7777789999999999996543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=1.8e-07  Score=82.55  Aligned_cols=291  Identities=12%  Similarity=0.092  Sum_probs=190.6

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHH-HHHHHH
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSF-NSVLNV  163 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~  163 (664)
                      -+.+++..+.+..++..|++++....+.++ .+...+..+..+|....++..|-..|+++..   ..|...-| ..-.+.
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQS   87 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHH
Confidence            367778888999999999999988887664 3667788999999999999999999999854   33443333 334677


Q ss_pred             HHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH--HHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC
Q 006010          164 IIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK--TVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN  241 (664)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  241 (664)
                      +.+.+.+..|+.+...|..   .   |+...-..-+.  .....+++..+..+.++....|   +..+.+.......+.|
T Consensus        88 LY~A~i~ADALrV~~~~~D---~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg  158 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLD---N---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG  158 (459)
T ss_pred             HHHhcccHHHHHHHHHhcC---C---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence            8889999999999988854   1   22222112222  2335689999999999988654   4556666667778999


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------------CH-----------
Q 006010          242 RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP-------------NE-----------  297 (664)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-------------~~-----------  297 (664)
                      +++.|.+-|+...+-+.-.....|+..+ +..+.|+++.|++...+++++|++.             |+           
T Consensus       159 qyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~  237 (459)
T KOG4340|consen  159 QYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ  237 (459)
T ss_pred             cHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence            9999999999988866555667787655 4556799999999999999887652             11           


Q ss_pred             ----HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006010          298 ----VTYNTLIHGLCLKGNLDKAVSLLDRMVAS-KCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYST  372 (664)
Q Consensus       298 ----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  372 (664)
                          ..+|.-...+.+.|+++.|.+.+-.|.-+ .-..|++|...+.-. -..+++.+..+-+.-+.+.++- ...+|..
T Consensus       238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFAN  315 (459)
T KOG4340|consen  238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFAN  315 (459)
T ss_pred             HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHH
Confidence                11222233344556666666655555322 123344444333211 1123444444444444444332 3445555


Q ss_pred             HHHHHHhcCChHHHHHHHH
Q 006010          373 LISGLFKEGKAEDAMKLWK  391 (664)
Q Consensus       373 l~~~~~~~~~~~~a~~~~~  391 (664)
                      ++-.||++.-++.|-.++-
T Consensus       316 lLllyCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  316 LLLLYCKNEYFDLAADVLA  334 (459)
T ss_pred             HHHHHhhhHHHhHHHHHHh
Confidence            5566666665555555543

>PF13041 PPR_2: PPR repeat family

Probab=99.18  E-value=8.2e-11  Score=77.55  Aligned_cols=47  Identities=47%  Similarity=0.776  Sum_probs=20.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006010          261 TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGL  307 (664)
Q Consensus       261 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~  307 (664)
                      |..+||.+|++|++.|++++|.++|++|.+.|+.||..||+.+++++
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~   48 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL   48 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.18  E-value=1.6e-08  Score=96.23  Aligned_cols=218  Identities=11%  Similarity=0.008  Sum_probs=141.8

Q ss_pred             ChhHHHHHHhhCCCCCCCCCC--hhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006010           62 EQPFSDEIFNSTPKLGSYQLG--DSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIR  139 (664)
Q Consensus        62 ~~~~a~~~f~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  139 (664)
                      ..+.++.-+..+....+..|+  ...|..+...+...|+++.|...|+++.+.++ .+..+|+.+...+...|++++|+.
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence            345566666555543332222  45677788888888999999998988888764 367788888888889999999999


Q ss_pred             HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010          140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  219 (664)
                      .|++.++.  .+.+..+|..++..+...|++++|.+.|+...+     ..|+..............++.++|.+.|.+..
T Consensus       120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~-----~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ-----DDPNDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            88888764  344567788888888888999999999988877     33443322222223345677888888886654


Q ss_pred             cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010          220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVD---GC---FPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKG  292 (664)
Q Consensus       220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g  292 (664)
                      ... .++...+ .+  .....|+...+ +.++.+.+.   .+   +.....|..+...+.+.|++++|...|++....+
T Consensus       193 ~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        193 EKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             hhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            332 2332221 22  22334555443 344444321   11   1123467777788888888888888888877654

>PF13041 PPR_2: PPR repeat family

Probab=99.17  E-value=8.7e-11  Score=77.42  Aligned_cols=49  Identities=49%  Similarity=0.941  Sum_probs=32.5

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006010          225 PDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLC  273 (664)
Q Consensus       225 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  273 (664)
                      ||..+|++++++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            5666666666666666666666666666666666666666666666654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.13  E-value=1.2e-06  Score=79.21  Aligned_cols=316  Identities=13%  Similarity=0.096  Sum_probs=165.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCH-HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHH-
Q 006010          152 RTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNT-LTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYT-  229 (664)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-  229 (664)
                      .++.-..-+...+...|++..|+.-|..+++     ..|+. .++-.-...|...|+...|+.-+...++.  +||-.. 
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A  108 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA  108 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH
Confidence            3455556667777777788888888877766     22332 23334455666777777777777777665  566432 


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010          230 YCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL  309 (664)
Q Consensus       230 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  309 (664)
                      -..-...+.+.|.+++|..-|+.+.+..  |+..+   ...++.+.-..++-..                ....+..+..
T Consensus       109 RiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~  167 (504)
T KOG0624|consen  109 RIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASG  167 (504)
T ss_pred             HHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhc
Confidence            2233456677788888888887777653  32211   1111111111111111                1122233345


Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          310 KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKL  389 (664)
Q Consensus       310 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  389 (664)
                      .|+...|+.....+++.. +-|...+..-..+|...|++..|+.-+....+..-. +...+..+-..+...|+.+.++..
T Consensus       168 ~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~  245 (504)
T KOG0624|consen  168 SGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKE  245 (504)
T ss_pred             CCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHH
Confidence            666677777777666652 446666666666777777777666665555544322 444555556666667777777766


Q ss_pred             HHHHHHcCCCCCHHHH----HHH---------HHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCh
Q 006010          390 WKQMMEKGCKPNTVVY----SAL---------IDGLCRVGKPDEAEEILFEMINNGCAAN---AFTYSSLMKGFFESGKG  453 (664)
Q Consensus       390 ~~~~~~~~~~~~~~~~----~~l---------i~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~  453 (664)
                      .++.++.  .||....    ..+         +......++|.++.+..+..++......   ...+..+-.++...+++
T Consensus       246 iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~  323 (504)
T KOG0624|consen  246 IRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF  323 (504)
T ss_pred             HHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence            6666654  2332211    000         1112334445555555555544421101   11222333344444555


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 006010          454 HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLS  500 (664)
Q Consensus       454 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  500 (664)
                      -+|++...++.... +.|..++.--..+|.-...++.|+.-|+...+
T Consensus       324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            55555555555433 22344454455555555555555555555554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.12  E-value=4e-07  Score=90.20  Aligned_cols=308  Identities=13%  Similarity=0.098  Sum_probs=174.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 006010          268 LINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGR  347 (664)
Q Consensus       268 li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  347 (664)
                      .+.+......|.+|+.+++.+.....  -..-|..+...|+..|+++.|.++|-+.-         .++..|.+|.+.|+
T Consensus       738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k  806 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK  806 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence            34555667788888888888776532  23456777788888999999988886542         35566788889999


Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010          348 AVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFE  427 (664)
Q Consensus       348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  427 (664)
                      +++|.++-.+..  |+......|-+-..-+-+.|++.+|.++|-.+.    .|+.     .|.+|-+.|..+..+++.++
T Consensus       807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence            998888776654  334455556665666677888888877765443    2332     46677777877777777665


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH---------
Q 006010          428 MINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQM---------  498 (664)
Q Consensus       428 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------  498 (664)
                      -.-..   -..+...+..-|...|+...|...|-+..+         |...++.|-..+-|++|.++-+.-         
T Consensus       876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v  943 (1636)
T KOG3616|consen  876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHV  943 (1636)
T ss_pred             hChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHH
Confidence            43221   123444555566667777777766644332         334444555555555554443210         


Q ss_pred             -----HhCCCCcCHH------hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 006010          499 -----LSRGCKPDVV------AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLL  567 (664)
Q Consensus       499 -----~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  567 (664)
                           ...|-..-+.      ....-+..-+..+.++-|..+-+-..+  . ..|.  ..-.+...+...|++++|-+.+
T Consensus       944 ~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~-k~~~--vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen  944 AFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--D-KMGE--VHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred             HHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--c-cCcc--chhHHhhhhhhccchhhhhHhh
Confidence                 0001000000      111122233444556666665554421  1 1111  1223444566789999998888


Q ss_pred             HHHHHCCCCCCHHHHHHHHH-----hhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHH
Q 006010          568 NSMMDRGCDPDLVTCNIFLT-----ALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIV  623 (664)
Q Consensus       568 ~~~~~~~~~p~~~~~~~ll~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  623 (664)
                      -+.++.  ..-..||...+-     ..-+.++.|..+.++       +.+.++|..|.++-
T Consensus      1019 veaikl--ntynitwcqavpsrfd~e~ir~gnkpe~av~m-------fi~dndwa~aerva 1070 (1636)
T KOG3616|consen 1019 VEAIKL--NTYNITWCQAVPSRFDAEFIRAGNKPEEAVEM-------FIHDNDWAAAERVA 1070 (1636)
T ss_pred             HHHhhc--ccccchhhhcccchhhHHHHHcCCChHHHHHH-------hhhcccHHHHHHHH
Confidence            877763  222333322211     111234556666665       45556665555543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.12  E-value=1.2e-07  Score=90.30  Aligned_cols=119  Identities=13%  Similarity=0.009  Sum_probs=52.2

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChh
Q 006010          132 HLVEEAIRLFHTMVDEFHCKRT--VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVD  209 (664)
Q Consensus       132 g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  209 (664)
                      +..+.++.-+.+++......|+  ...|..++..+...|++++|...|++.++..    +.+...|+.+...+...|+++
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----P~~~~a~~~lg~~~~~~g~~~  115 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR----PDMADAYNYLGIYLTQAGNFD  115 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHH
Confidence            4444455544444432211111  2334444444555555555555555544411    112334444444445555555


Q ss_pred             HHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006010          210 NAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQV  255 (664)
Q Consensus       210 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  255 (664)
                      +|.+.|+...+.. +.+..+|..+..++...|++++|.+.|+...+
T Consensus       116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~  160 (296)
T PRK11189        116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ  160 (296)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5555554444432 22334444444444444555555544444444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.10  E-value=1.3e-06  Score=86.89  Aligned_cols=204  Identities=11%  Similarity=0.004  Sum_probs=133.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHH
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV-KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTF  195 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  195 (664)
                      ....+..+...+...|+.+++.+.+...........+. .........+...|++++|...++++.+..    +.+...+
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~   80 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY----PRDLLAL   80 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHH
Confidence            34466677777777888888877777765543333332 233334556677899999999999988721    2233333


Q ss_pred             HH---HHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006010          196 NL---VIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGL  272 (664)
Q Consensus       196 ~~---ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  272 (664)
                      ..   ........|..+.+.+.+...... .+........+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~  158 (355)
T cd05804          81 KLHLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL  158 (355)
T ss_pred             HHhHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence            32   111112245556666666552222 12334455566678888999999999999988764 34566778888888


Q ss_pred             HhcCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010          273 CKNGELGRAAKLVDNMFLKGC-LPNE--VTYNTLIHGLCLKGNLDKAVSLLDRMVAS  326 (664)
Q Consensus       273 ~~~g~~~~a~~~~~~~~~~g~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  326 (664)
                      ...|++++|...+++...... .|+.  ..|..+...+...|++++|..++++....
T Consensus       159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            899999999999988776532 1222  24556777888899999999999887543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.09  E-value=6.1e-06  Score=83.21  Aligned_cols=140  Identities=13%  Similarity=0.097  Sum_probs=71.1

Q ss_pred             HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhccc------CCCCcCHHHHHHHHHH
Q 006010          128 YGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKH------MNILPNTLTFNLVIKT  201 (664)
Q Consensus       128 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~ll~~  201 (664)
                      |...|+.+.|.+-.+.+..       -..|..+..+|++.++.+-|.-++-.|....+      ....|+ ..-..+...
T Consensus       738 yvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL  809 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL  809 (1416)
T ss_pred             EEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence            4456666666666655521       23566666666666666655555444432110      001121 122222333


Q ss_pred             HHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010          202 VCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRA  281 (664)
Q Consensus       202 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  281 (664)
                      ..+.|.+++|..+|++-.+.         ..|=..|-..|.+++|.++-+.--..  . =..||......+-..+|.+.|
T Consensus       810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~A  877 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAA  877 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHH
Confidence            44566677777776665432         22334455566666666665432221  1 223555555555556666666


Q ss_pred             HHHHHH
Q 006010          282 AKLVDN  287 (664)
Q Consensus       282 ~~~~~~  287 (664)
                      ++.|++
T Consensus       878 leyyEK  883 (1416)
T KOG3617|consen  878 LEYYEK  883 (1416)
T ss_pred             HHHHHh
Confidence            666654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.09  E-value=5.4e-06  Score=75.05  Aligned_cols=253  Identities=14%  Similarity=0.107  Sum_probs=120.9

Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006010          343 VKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAE  422 (664)
Q Consensus       343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  422 (664)
                      ...|+...++.....+.+..+ .|...+..-..+|...|++..|+.=++...+... .+..++--+-..+...|+.+.++
T Consensus       166 ~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL  243 (504)
T KOG0624|consen  166 SGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSL  243 (504)
T ss_pred             hcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHH
Confidence            334555555555555554432 2445555555555555555555554444443321 13333334444445555555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 006010          423 EILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG  502 (664)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  502 (664)
                      ...++.++.  .||.......   |   ....+..+.++.                +......++|.++++-.+...+..
T Consensus       244 ~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~e  299 (504)
T KOG0624|consen  244 KEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNE  299 (504)
T ss_pred             HHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcC
Confidence            555555543  2222111000   0   001111111111                112344566666666666666543


Q ss_pred             CCcCHH---hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010          503 CKPDVV---AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL  579 (664)
Q Consensus       503 ~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  579 (664)
                      ......   .+..+-.++...|++.+|++...+++..++.   |..++-.-..+|.-...+++|+.-|+++.+  +.++.
T Consensus       300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~---dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn  374 (504)
T KOG0624|consen  300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD---DVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESN  374 (504)
T ss_pred             CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCccc
Confidence            221122   2233444555667777777777777543222   456666666777777777777777777776  44544


Q ss_pred             HHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          580 VTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       580 ~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      .....-+....+. .....-+.|+..|+  --+.-.-.+..+.+++|-.+
T Consensus       375 ~~~reGle~Akrl-kkqs~kRDYYKILG--VkRnAsKqEI~KAYRKlAqk  421 (504)
T KOG0624|consen  375 TRAREGLERAKRL-KKQSGKRDYYKILG--VKRNASKQEITKAYRKLAQK  421 (504)
T ss_pred             HHHHHHHHHHHHH-HHHhccchHHHHhh--hcccccHHHHHHHHHHHHHh
Confidence            4333333221111 11122234444444  22333445666777777665

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.07  E-value=1.8e-05  Score=76.33  Aligned_cols=178  Identities=15%  Similarity=0.142  Sum_probs=125.4

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 006010          382 KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA-NAFTYSSLMKGFFESGKGHKAVEIW  460 (664)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~  460 (664)
                      ..+.....++++...-...-.-+|..+|+...+..-++.|..+|.++.+.+..+ ++.+.++++..|+ .++..-|.++|
T Consensus       346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF  424 (656)
T KOG1914|consen  346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF  424 (656)
T ss_pred             hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence            356666777776654322234567778888888888999999999999887555 7778888888765 57888999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH--HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010          461 KDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV--VAYSSMIHGLCNAGSVEEALKLFNEMLCLEP  538 (664)
Q Consensus       461 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (664)
                      +.-.+.- ..+..--...+..+...++-..|..+|++.+..++.|+.  ..|..++.--..-|+...+.++-+++...-+
T Consensus       425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            8866654 244444556777888889999999999999988666663  6899999988999999999888877643222


Q ss_pred             -CCCCCHhHHHHHHHHHHHcCChh
Q 006010          539 -KSQPDVFTYNILLNALCKQSNIS  561 (664)
Q Consensus       539 -~~~~~~~~~~~l~~~~~~~g~~~  561 (664)
                       ...+....-..+++.|.-.+.+.
T Consensus       504 ~~qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  504 ADQEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             hhhcCCCChHHHHHHHHhhccccc
Confidence             12222223334555555555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.06  E-value=7.9e-06  Score=82.46  Aligned_cols=212  Identities=15%  Similarity=0.180  Sum_probs=113.5

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCC--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREK--------RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT  153 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  153 (664)
                      +...|..+...|.+.++++-|.-.+..|....        ...+.+.=..++......|+.++|..+|++-.        
T Consensus       756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ck--------  827 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCK--------  827 (1416)
T ss_pred             hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHH--------
Confidence            45678888888888888887776665554321        00011122233333457788888888887652        


Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCC---------C
Q 006010          154 VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNC---------E  224 (664)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---------~  224 (664)
                        -|..+-..|...|.+++|.++-+.--+     +. =..||......+...++.+.|++.|++.-...+         +
T Consensus       828 --R~DLlNKlyQs~g~w~eA~eiAE~~DR-----iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p  899 (1416)
T KOG3617|consen  828 --RYDLLNKLYQSQGMWSEAFEIAETKDR-----IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP  899 (1416)
T ss_pred             --HHHHHHHHHHhcccHHHHHHHHhhccc-----ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence              234455566677888888887765322     11 122555555666667777777777765421100         1


Q ss_pred             ----------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 006010          225 ----------PDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCL  294 (664)
Q Consensus       225 ----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~  294 (664)
                                .|...|.-....+-..|+.+.|+.+|.....         |-.+++..|-.|+.++|-++-++-      
T Consensus       900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------  964 (1416)
T KOG3617|consen  900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------  964 (1416)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------
Confidence                      1222233333333344555555555544432         334444445555555555554432      


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010          295 PNEVTYNTLIHGLCLKGNLDKAVSLLDRMV  324 (664)
Q Consensus       295 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  324 (664)
                      -|......+.+.|-..|++.+|...|.+..
T Consensus       965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  965 GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            134444455556666666666666655543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.01  E-value=3.3e-05  Score=74.60  Aligned_cols=181  Identities=15%  Similarity=0.204  Sum_probs=112.0

Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHhCC-CCcCHHhHHHHHHHHHHcCCHHHHHH
Q 006010          453 GHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG---KLREARMVWTQMLSRG-CKPDVVAYSSMIHGLCNAGSVEEALK  528 (664)
Q Consensus       453 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~  528 (664)
                      .+++..++++....-...+..+|..+...--..-   ..+.....+++++..- ..|+ .+|..+++.-.+..-++.|..
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~  387 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK  387 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence            3455666666555332334444444433221111   2555566666665432 2333 467777777777778888888


Q ss_pred             HHHHhhhcCCCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhhHHH
Q 006010          529 LFNEMLCLEPKSQP-DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFLNEL  606 (664)
Q Consensus       529 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~l  606 (664)
                      +|.++  .+.+..+ ++...++++.-|| .++.+-|.++|+--++.  -+|... ....+.-                  
T Consensus       388 iF~ka--R~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~Yldf------------------  444 (656)
T KOG1914|consen  388 IFKKA--REDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDF------------------  444 (656)
T ss_pred             HHHHH--hhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHH------------------
Confidence            88888  4444444 5666777776665 46778888888776652  333332 2333333                  


Q ss_pred             HHHhhhcCCcchHHHHHHHHHHcCCCCCh--HHHHHHHHHhcccchHHHHHHHHHh
Q 006010          607 AIRLFKRQRTSGGFKIVEVMLQKFLSPQT--STWERVVQELCRPKRIQAAINKCWS  660 (664)
Q Consensus       607 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~  660 (664)
                         +...++-..|..+|++....+++++.  .+|..+++--..-|++.-++++-++
T Consensus       445 ---L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR  497 (656)
T KOG1914|consen  445 ---LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR  497 (656)
T ss_pred             ---HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence               66777778888888888877555543  7888888888888888888776544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.97  E-value=6.6e-06  Score=92.93  Aligned_cols=339  Identities=12%  Similarity=-0.004  Sum_probs=211.1

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC------CCC--HHHHHHHHHH
Q 006010          235 DGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGC------LPN--EVTYNTLIHG  306 (664)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~------~p~--~~~~~~l~~~  306 (664)
                      ......|+++.+...++.+.......++.........+...|+++++..++......-.      .+.  ......+...
T Consensus       382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~  461 (903)
T PRK04841        382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV  461 (903)
T ss_pred             HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence            34455677777777766553211112222333445556678999999999987754311      111  1122233445


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHH
Q 006010          307 LCLKGNLDKAVSLLDRMVASKCMPNE----VTYGTIINGLVKLGRAVDGARVLMSMEER----KFH-VNEYIYSTLISGL  377 (664)
Q Consensus       307 ~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~  377 (664)
                      +...|++++|...+++....-...+.    .....+...+...|++++|...+.+....    +.. ........+...+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            66799999999999988763111121    23445566677899999999998887643    111 1123445566778


Q ss_pred             HhcCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 006010          378 FKEGKAEDAMKLWKQMMEK----GCK--P-NTVVYSALIDGLCRVGKPDEAEEILFEMINNG--CAA--NAFTYSSLMKG  446 (664)
Q Consensus       378 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~  446 (664)
                      ...|+++.|...+++....    +..  + ....+..+...+...|++++|...+.+.....  ..+  ....+..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            8899999999998886652    211  1 12334455566777899999999998876531  111  23344456667


Q ss_pred             HHhcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH---HhHHHHHHHH
Q 006010          447 FFESGKGHKAVEIWKDMAKNN--CVYNEV--CY--SVLIHGLCEDGKLREARMVWTQMLSRGCKPDV---VAYSSMIHGL  517 (664)
Q Consensus       447 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~  517 (664)
                      +...|+.+.|.+.++......  ......  ..  ...+..+...|+.+.|...+............   ..+..+..++
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            888999999999988875421  111111  00  11224445688999999998776542211111   1234667778


Q ss_pred             HHcCCHHHHHHHHHHhhhcCC--CCCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006010          518 CNAGSVEEALKLFNEMLCLEP--KSQPD-VFTYNILLNALCKQSNISHSIDLLNSMMDR  573 (664)
Q Consensus       518 ~~~g~~~~A~~~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  573 (664)
                      ...|++++|..++++++....  +..++ ..++..+..++.+.|+.++|...+.++.+.
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            899999999999998864321  22221 234556667888999999999999999874

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.96  E-value=5.5e-08  Score=91.03  Aligned_cols=252  Identities=13%  Similarity=0.106  Sum_probs=126.3

Q ss_pred             HHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010           90 IQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL  169 (664)
Q Consensus        90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (664)
                      ++-+.-.|++..+..-.+ ....+..........+.+++...|+++.++.-...   .  .+|.......+...+...++
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~--~~~~l~av~~la~y~~~~~~   81 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---S--SSPELQAVRLLAEYLSSPSD   81 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---T--SSCCCHHHHHHHHHHCTSTT
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---C--CChhHHHHHHHHHHHhCccc
Confidence            344555677776665555 33333333444555666777777776655443221   1  24444444444443333234


Q ss_pred             HhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010          170 YHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVL  248 (664)
Q Consensus       170 ~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  248 (664)
                      -+.++.-++....   ....+ +..........+...|++++|++++...      .+.+.....+.+|.+.++++.|.+
T Consensus        82 ~e~~l~~l~~~~~---~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k  152 (290)
T PF04733_consen   82 KESALEELKELLA---DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEK  152 (290)
T ss_dssp             HHCHHHHHHHCCC---TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             hHHHHHHHHHHHH---hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHH
Confidence            4444444444332   11111 2222222223444557777776666543      245566666677777777777777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010          249 LLDEMQVDGCFPTPVTFNVLINGLCK----NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMV  324 (664)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  324 (664)
                      .++.|.+.+  .| .+...++.++..    .+.+.+|..+|+++... ..+++.+.+.+..++...|++++|.+++.+..
T Consensus       153 ~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al  228 (290)
T PF04733_consen  153 ELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL  228 (290)
T ss_dssp             HHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred             HHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            777776542  22 333333333322    23566777777776443 34566666666666666777777777766665


Q ss_pred             HCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHc
Q 006010          325 ASKCMPNEVTYGTIINGLVKLGRA-VDGARVLMSMEER  361 (664)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~  361 (664)
                      ..+ +-++.+...++.+....|+. +.+.+.+.++...
T Consensus       229 ~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  229 EKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             CC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             Hhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            543 23444555555555555555 4455555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.95  E-value=7.2e-08  Score=93.26  Aligned_cols=259  Identities=16%  Similarity=0.138  Sum_probs=152.8

Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010          342 LVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEA  421 (664)
Q Consensus       342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  421 (664)
                      +.+.|++.+|.-.|+...+.++. +...|..|.......++-..|+..+++..+.... +......|.-.|...|.-.+|
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence            45566666666666666665444 5566666666666666666666666666655322 455555555566666666666


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH-Hh
Q 006010          422 EEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQM-LS  500 (664)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  500 (664)
                      .+.++..+....+. .  +  +..+ ...++...-          +..++..             ......++|-++ ..
T Consensus       373 l~~L~~Wi~~~p~y-~--~--l~~a-~~~~~~~~~----------~s~~~~~-------------~l~~i~~~fLeaa~~  423 (579)
T KOG1125|consen  373 LKMLDKWIRNKPKY-V--H--LVSA-GENEDFENT----------KSFLDSS-------------HLAHIQELFLEAARQ  423 (579)
T ss_pred             HHHHHHHHHhCccc-h--h--cccc-CccccccCC----------cCCCCHH-------------HHHHHHHHHHHHHHh
Confidence            66666665542110 0  0  0000 000000000          0011111             122333344333 34


Q ss_pred             CCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010          501 RGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       501 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  580 (664)
                      .+..+|..+...|.-.|--.|++++|+..|+.++..+|.   |..+||.|...+....+.++|+..|+++++  +.|..+
T Consensus       424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yV  498 (579)
T KOG1125|consen  424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN---DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYV  498 (579)
T ss_pred             CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCee
Confidence            444467777778888888888888888888888765554   677888888888888888888888888887  677754


Q ss_pred             HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc---C------CCCChHHHHHHHHHhcccchH
Q 006010          581 TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK---F------LSPQTSTWERVVQELCRPKRI  651 (664)
Q Consensus       581 ~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~------~~~~~~~~~~l~~~~~~~g~~  651 (664)
                      -...-+.                    ..|...|.+++|.++|-.++..   +      ..++..+|..|=.++...++.
T Consensus       499 R~RyNlg--------------------IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~  558 (579)
T KOG1125|consen  499 RVRYNLG--------------------ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS  558 (579)
T ss_pred             eeehhhh--------------------hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence            3222222                    2378888888888888766543   1      111345787777777777776


Q ss_pred             HHHHH
Q 006010          652 QAAIN  656 (664)
Q Consensus       652 ~~A~~  656 (664)
                      |-+..
T Consensus       559 D~l~~  563 (579)
T KOG1125|consen  559 DLLQE  563 (579)
T ss_pred             hHHHH
Confidence            64443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.94  E-value=1.5e-07  Score=91.05  Aligned_cols=248  Identities=17%  Similarity=0.138  Sum_probs=168.5

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 006010          307 LCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDA  386 (664)
Q Consensus       307 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  386 (664)
                      +.+.|++.+|.-.|+..+... +-+...|.-|.......++-..|+..+.++.+..+. +....-.|...|...|.-.+|
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence            345666777777777666653 335566666666666677777777777777766544 566666677777777777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCChhHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCChH
Q 006010          387 MKLWKQMMEKGCKPNTVVYSALI-----------DGLCRVGKPDEAEEILFE-MINNGCAANAFTYSSLMKGFFESGKGH  454 (664)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~  454 (664)
                      +..+++-+...++     |..+.           ..+..........++|-+ ....+...|+.+...|.-.|--.|+++
T Consensus       373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            7777766543211     00000           011111122333444444 444554578888888988999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH-HhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010          455 KAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV-VAYSSMIHGLCNAGSVEEALKLFNEM  533 (664)
Q Consensus       455 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (664)
                      +|+..|+.++... |.|..+||.|...++...+.++|+..|.++++.  +|.- .+...|.-.|...|.+++|.+.|-.+
T Consensus       448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            9999999999876 667889999999999999999999999999984  7774 56667788899999999999999888


Q ss_pred             hhcCCC-------CCCCHhHHHHHHHHHHHcCChhHHH
Q 006010          534 LCLEPK-------SQPDVFTYNILLNALCKQSNISHSI  564 (664)
Q Consensus       534 ~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~  564 (664)
                      +....+       ..++..+|..|=.++.-.++.+-+.
T Consensus       525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence            654432       1122346666666666666655443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.93  E-value=9.3e-06  Score=91.72  Aligned_cols=374  Identities=12%  Similarity=0.013  Sum_probs=199.5

Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 006010          158 NSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGL  237 (664)
Q Consensus       158 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  237 (664)
                      ......+...|++.+|...+.....   .  ..-..............|+++.+..+++.+.......+..........+
T Consensus       345 ~raa~~~~~~g~~~~Al~~a~~a~d---~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~  419 (903)
T PRK04841        345 RAAAEAWLAQGFPSEAIHHALAAGD---A--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA  419 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCC---H--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence            3344445566666666654444321   0  0000111122233445677777777766653221111222233344445


Q ss_pred             HhcCChhHHHHHHHHHHhCC--C----CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHH
Q 006010          238 CKENRLDEAVLLLDEMQVDG--C----FPT--PVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNE----VTYNTLIH  305 (664)
Q Consensus       238 ~~~g~~~~a~~~~~~~~~~~--~----~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~  305 (664)
                      ...|+++++...+......-  .    .+.  ......+...+...|++++|...+++....-...+.    ...+.+..
T Consensus       420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~  499 (903)
T PRK04841        420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE  499 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence            56677777777776654320  0    111  111222334455677788887777776553111121    23445555


Q ss_pred             HHHhcCChHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHH
Q 006010          306 GLCLKGNLDKAVSLLDRMVAS----KC-MPNEVTYGTIINGLVKLGRAVDGARVLMSMEER----KFH--V-NEYIYSTL  373 (664)
Q Consensus       306 ~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l  373 (664)
                      .+...|++++|...+++....    |. ......+..+...+...|++++|...+++....    +..  + ....+..+
T Consensus       500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  579 (903)
T PRK04841        500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR  579 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            666778888877777776542    10 111233445556667778888877777665432    211  1 22334455


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHH--H--HHHH
Q 006010          374 ISGLFKEGKAEDAMKLWKQMMEKG--CKP--NTVVYSALIDGLCRVGKPDEAEEILFEMINNG--CAANAF--T--YSSL  443 (664)
Q Consensus       374 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~l  443 (664)
                      ...+...|++++|...+++.....  ..+  ....+..+...+...|+++.|...+..+....  ......  .  ....
T Consensus       580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~  659 (903)
T PRK04841        580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR  659 (903)
T ss_pred             HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence            556666788888877777765421  111  12334445556677788888887777764421  011111  1  1112


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCcC-HHhHHHHHH
Q 006010          444 MKGFFESGKGHKAVEIWKDMAKNNCVYNE---VCYSVLIHGLCEDGKLREARMVWTQMLSR----GCKPD-VVAYSSMIH  515 (664)
Q Consensus       444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~  515 (664)
                      +..+...|+.+.|.+.+............   ..+..+..++...|+.++|...+++....    |..++ ..+...+..
T Consensus       660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~  739 (903)
T PRK04841        660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ  739 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            24445577888887777665432211111   11345666777888888888888776643    22222 245666777


Q ss_pred             HHHHcCCHHHHHHHHHHhhhc
Q 006010          516 GLCNAGSVEEALKLFNEMLCL  536 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~  536 (664)
                      ++.+.|+.++|...+.+++..
T Consensus       740 a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        740 LYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            788888888888888888643

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.92  E-value=1e-07  Score=89.27  Aligned_cols=155  Identities=15%  Similarity=0.142  Sum_probs=96.5

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHcCCC
Q 006010          411 GLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYS---VLIHGLCEDGK  487 (664)
Q Consensus       411 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~  487 (664)
                      .+...|++++|++++...      .+.......+..|.+.++++.|.+.++.|.+.+  .|.....   +.+......+.
T Consensus       111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~  182 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEK  182 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchh
Confidence            445567777777666432      355666667777777777777777777776643  3333221   22222223346


Q ss_pred             hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCCh-hHHHHH
Q 006010          488 LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNI-SHSIDL  566 (664)
Q Consensus       488 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~  566 (664)
                      +.+|..+|+++.+. ..++..+.+.++.++...|++++|.+++++++..+++   +..+...++.+....|+. +.+.+.
T Consensus       183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~---~~d~LaNliv~~~~~gk~~~~~~~~  258 (290)
T PF04733_consen  183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN---DPDTLANLIVCSLHLGKPTEAAERY  258 (290)
T ss_dssp             CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC---HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhCCChhHHHHH
Confidence            78888888887654 4567777888888888888888888888888543333   555666677776777776 556667


Q ss_pred             HHHHHHCCCCCCH
Q 006010          567 LNSMMDRGCDPDL  579 (664)
Q Consensus       567 ~~~~~~~~~~p~~  579 (664)
                      +.++..  ..|+.
T Consensus       259 l~qL~~--~~p~h  269 (290)
T PF04733_consen  259 LSQLKQ--SNPNH  269 (290)
T ss_dssp             HHHCHH--HTTTS
T ss_pred             HHHHHH--hCCCC
Confidence            777765  45554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.87  E-value=1.2e-06  Score=87.28  Aligned_cols=232  Identities=14%  Similarity=0.125  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010          368 YIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGF  447 (664)
Q Consensus       368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  447 (664)
                      ..-..+...+...|-...|+.+++++.         .|..++.+|+..|+..+|..+..+.+++  +|++..|..+.+..
T Consensus       399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL  467 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence            334556677778888888888887653         4566788888888888888888888774  78888888888877


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHH
Q 006010          448 FESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEAL  527 (664)
Q Consensus       448 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  527 (664)
                      ....-+++|.++.+.....       +-..+.......+++.++.+.|+.-.+.. +.-..+|-.+..+..+.++++.|.
T Consensus       468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence            7766777777777664432       11112222334678888888888776642 223467878888888888888888


Q ss_pred             HHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHH
Q 006010          528 KLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELA  607 (664)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~  607 (664)
                      +.|...+..+|+   +...||.+-.+|.+.|+-.+|...+++..+.+..+- ..|...+-.                   
T Consensus       540 ~aF~rcvtL~Pd---~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w-~iWENymlv-------------------  596 (777)
T KOG1128|consen  540 KAFHRCVTLEPD---NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW-QIWENYMLV-------------------  596 (777)
T ss_pred             HHHHHHhhcCCC---chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC-eeeechhhh-------------------
Confidence            888888776665   667888888888888888888888888887553322 222222222                   


Q ss_pred             HHhhhcCCcchHHHHHHHHHHc-CCCCChHHHHHHHH
Q 006010          608 IRLFKRQRTSGGFKIVEVMLQK-FLSPQTSTWERVVQ  643 (664)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~  643 (664)
                        ..+.|.+++|++.+.++... ....|..+...++.
T Consensus       597 --svdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~  631 (777)
T KOG1128|consen  597 --SVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR  631 (777)
T ss_pred             --hhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence              56788888888888887764 11224444444433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.85  E-value=0.00021  Score=73.52  Aligned_cols=223  Identities=14%  Similarity=0.126  Sum_probs=124.1

Q ss_pred             HHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHh
Q 006010           92 HYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYH  171 (664)
Q Consensus        92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  171 (664)
                      -....+++..|.+....+.+..+. ...+...-+-.+.+.|+.++|..+++..-..  ...|..+...+-.+|...++.+
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--~~~D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGL--KGTDDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccC--CCCchHHHHHHHHHHHHHhhhh
Confidence            345667788888888887776543 2222222233456788888888777765222  2336677788888888888888


Q ss_pred             HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhH----HHHHHhhcccCCCCCCHHHHHHHHHHHHhcC-C----
Q 006010          172 RALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDN----AIQLFREMPVRNCEPDIYTYCTLMDGLCKEN-R----  242 (664)
Q Consensus       172 ~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~----  242 (664)
                      +|..+|+++..     ..|+......+..+|.+.+++.+    |.+++....     -..+.+=++++.+...- .    
T Consensus        95 ~~~~~Ye~~~~-----~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-----k~~yyfWsV~Slilqs~~~~~~~  164 (932)
T KOG2053|consen   95 EAVHLYERANQ-----KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-----KRAYYFWSVISLILQSIFSENEL  164 (932)
T ss_pred             HHHHHHHHHHh-----hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----cccchHHHHHHHHHHhccCCccc
Confidence            88888888865     44665555566667777766654    444444332     23333333444443311 1    


Q ss_pred             -----hhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 006010          243 -----LDEAVLLLDEMQVDG-CFPTPVTFNVLINGLCKNGELGRAAKLVDN-MFLKGCLPNEVTYNTLIHGLCLKGNLDK  315 (664)
Q Consensus       243 -----~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~g~~p~~~~~~~l~~~~~~~g~~~~  315 (664)
                           ..-|.+.++.+.+.+ -.-+..-...-...+-..|++++|.+++.. ..+.-..-+...-+.-+..+...+++.+
T Consensus       165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~  244 (932)
T KOG2053|consen  165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE  244 (932)
T ss_pred             ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence                 123444555554443 111112222223344456667777777633 2222222233333445556666777777


Q ss_pred             HHHHHHHHHHCC
Q 006010          316 AVSLLDRMVASK  327 (664)
Q Consensus       316 a~~~~~~~~~~~  327 (664)
                      ..++-.++...|
T Consensus       245 l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  245 LFELSSRLLEKG  256 (932)
T ss_pred             HHHHHHHHHHhC
Confidence            777777776664

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.81  E-value=3.4e-06  Score=89.92  Aligned_cols=201  Identities=13%  Similarity=0.102  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHH
Q 006010          118 EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT---VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLT  194 (664)
Q Consensus       118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  194 (664)
                      ...|...+......++.+.|++++++++..-++...   ...|.++++....-|.-+...++|+++.+     +-.....
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-----ycd~~~V 1532 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-----YCDAYTV 1532 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-----hcchHHH
Confidence            334445555555555555555555554443222111   12344444444444444444445554443     1111223


Q ss_pred             HHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 006010          195 FNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT---PVTFNVLING  271 (664)
Q Consensus       195 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~  271 (664)
                      |..|...|.+.+.+++|.++++.|.+.= ......|..++..+.+.++-+.|..++.+..+.  -|.   .......+..
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence            4444444445555555555555544331 123344444444444444444444444444432  111   1222223333


Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010          272 LCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASK  327 (664)
Q Consensus       272 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  327 (664)
                      -.+.|+.+++..+|+.....-++ -...|+..++.-.+.|+.+.+..+|+++...+
T Consensus      1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            34444444444444444433211 23344444444444444444444444444443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.78  E-value=1.4e-06  Score=86.92  Aligned_cols=219  Identities=17%  Similarity=0.142  Sum_probs=178.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI  479 (664)
Q Consensus       400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  479 (664)
                      |--..-..+...+...|-...|..++++..         .|..++.+|...|+..+|..+..+..+.  +|+...|..++
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG  464 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG  464 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence            333444556777888999999999998754         5677888999999999999999888873  58999999888


Q ss_pred             HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010          480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN  559 (664)
Q Consensus       480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  559 (664)
                      +......-+++|.++.+..-..       +-..+.....+.++++++.+.|+..+++++.   -..+|-.+..+..+.++
T Consensus       465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl---q~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL---QLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc---chhHHHhccHHHHHHhh
Confidence            8887777788888888765432       2222233334579999999999999776665   56789889999999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCHH-HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHH
Q 006010          560 ISHSIDLLNSMMDRGCDPDLV-TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTW  638 (664)
Q Consensus       560 ~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  638 (664)
                      ++.|.+.|...+.  ..||.. .|+.+-.+                     |.+.|.-.+|...++++.+-. ..+..+|
T Consensus       535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~a---------------------yi~~~~k~ra~~~l~EAlKcn-~~~w~iW  590 (777)
T KOG1128|consen  535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTA---------------------YIRLKKKKRAFRKLKEALKCN-YQHWQIW  590 (777)
T ss_pred             hHHHHHHHHHHhh--cCCCchhhhhhhhHH---------------------HHHHhhhHHHHHHHHHHhhcC-CCCCeee
Confidence            9999999999998  678765 47777777                     999999999999999999865 6677999


Q ss_pred             HHHHHHhcccchHHHHHHHHHhhhc
Q 006010          639 ERVVQELCRPKRIQAAINKCWSNLY  663 (664)
Q Consensus       639 ~~l~~~~~~~g~~~~A~~~~~~~l~  663 (664)
                      ....-...+.|.+++|++.|++.+.
T Consensus       591 ENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  591 ENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             echhhhhhhcccHHHHHHHHHHHHH
Confidence            9999999999999999999998653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.76  E-value=5.9e-07  Score=83.16  Aligned_cols=182  Identities=12%  Similarity=0.075  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHH
Q 006010          472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD----VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTY  547 (664)
Q Consensus       472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  547 (664)
                      ...+..++..+...|++++|...+++++..  .|+    ..++..+..++...|++++|...++++++..|+...-...+
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            334444555555666666666666665543  222    13445555666666666666666666654333321111233


Q ss_pred             HHHHHHHHHc--------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchH
Q 006010          548 NILLNALCKQ--------SNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGG  619 (664)
Q Consensus       548 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  619 (664)
                      ..+..++...        |++++|.+.++++.+  ..|+.......+..+......   -......++..+.+.|++++|
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~~~~~---~~~~~~~~a~~~~~~g~~~~A  185 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDYLRNR---LAGKELYVARFYLKRGAYVAA  185 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCChHHH
Confidence            3344444433        566667777776665  344432211111110000000   000012456669999999999


Q ss_pred             HHHHHHHHHcC--CCCChHHHHHHHHHhcccchHHHHHHHHHh
Q 006010          620 FKIVEVMLQKF--LSPQTSTWERVVQELCRPKRIQAAINKCWS  660 (664)
Q Consensus       620 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  660 (664)
                      ...++++.+..  .+..+..+..++.++.+.|++++|.+.+..
T Consensus       186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~  228 (235)
T TIGR03302       186 INRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV  228 (235)
T ss_pred             HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999861  122458899999999999999999997654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.73  E-value=1.4e-05  Score=76.03  Aligned_cols=206  Identities=12%  Similarity=0.059  Sum_probs=134.2

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh--
Q 006010          412 LCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESG-KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKL--  488 (664)
Q Consensus       412 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--  488 (664)
                      +...+..++|+....++++.. +.+..+|+.-...+...| ++++++..++.+.+.+ +.+..+|+.....+.+.|+.  
T Consensus        47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence            344566777777777777764 444555655555555666 5678888888877765 45556666555555555553  


Q ss_pred             HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc---CCh----h
Q 006010          489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ---SNI----S  561 (664)
Q Consensus       489 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~  561 (664)
                      ++++.+++++++.. +-+..+|.....++.+.|+++++++.++++++.++.   |...|+.....+.+.   |..    +
T Consensus       125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~---N~sAW~~R~~vl~~~~~l~~~~~~~e  200 (320)
T PLN02789        125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR---NNSAWNQRYFVITRSPLLGGLEAMRD  200 (320)
T ss_pred             HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC---chhHHHHHHHHHHhccccccccccHH
Confidence            67788888888754 335678888888888888899999999998765554   666777766665544   222    4


Q ss_pred             HHHHHHHHHHHCCCCCCHH-HHHHHHHhhhhhccCCCCchhhhHHHHHHhhh----cCCcchHHHHHHHHHHcCCCCChH
Q 006010          562 HSIDLLNSMMDRGCDPDLV-TCNIFLTALKEKLEAPQDGTDFLNELAIRLFK----RQRTSGGFKIVEVMLQKFLSPQTS  636 (664)
Q Consensus       562 ~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~  636 (664)
                      +++...++++.  ..|+.. .|+.+...                     +..    .++..+|.+.+.+..+.+ +.++.
T Consensus       201 ~el~y~~~aI~--~~P~N~SaW~Yl~~l---------------------l~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~  256 (320)
T PLN02789        201 SELKYTIDAIL--ANPRNESPWRYLRGL---------------------FKDDKEALVSDPEVSSVCLEVLSKD-SNHVF  256 (320)
T ss_pred             HHHHHHHHHHH--hCCCCcCHHHHHHHH---------------------HhcCCcccccchhHHHHHHHhhccc-CCcHH
Confidence            67777777776  456544 45555444                     333    244456777777766532 33556


Q ss_pred             HHHHHHHHhcc
Q 006010          637 TWERVVQELCR  647 (664)
Q Consensus       637 ~~~~l~~~~~~  647 (664)
                      ...-|++.++.
T Consensus       257 al~~l~d~~~~  267 (320)
T PLN02789        257 ALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHh
Confidence            67777777765

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.72  E-value=1.1e-05  Score=86.20  Aligned_cols=207  Identities=14%  Similarity=0.155  Sum_probs=160.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEK-GCK---PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYS  441 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  441 (664)
                      +...|-..|....+.++.++|.++.++++.. ++.   --...|.++++.-...|.-+...++|+++.+..  .....|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence            5566777777788888888888888887753 111   123467777777777788888889999988763  3456778


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC---HHhHHHHHHHHH
Q 006010          442 SLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD---VVAYSSMIHGLC  518 (664)
Q Consensus       442 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~  518 (664)
                      .|...|.+.+..++|.++++.|.+.- ......|...+..+.++++-++|..++.+++..  .|.   .....-.+..-.
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence            88899999999999999999998864 356778999999999999999999999988875  444   233445566667


Q ss_pred             HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010          519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  580 (664)
                      +.|+.+++..+|+..+...|.   -...|+.+++.-.++|+.+.+..+|++.+..++.|-..
T Consensus      1612 k~GDaeRGRtlfEgll~ayPK---RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK---RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhCcc---chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence            889999999999998754443   55689999999999999999999999999887777654

>PLN02789 farnesyltranstransferase

Probab=98.69  E-value=3.6e-05  Score=73.27  Aligned_cols=204  Identities=12%  Similarity=0.075  Sum_probs=131.2

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-
Q 006010          376 GLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG-KPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKG-  453 (664)
Q Consensus       376 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-  453 (664)
                      .+...+..++|+.+..++++.... +..+|+....++...| ++++++..++++++.+ +.+..+|+.....+.+.|+. 
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~  123 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA  123 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence            344456777777777777765322 3345555555555556 5678888888877764 44555665554444555542 


Q ss_pred             -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc---CC----HHH
Q 006010          454 -HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA---GS----VEE  525 (664)
Q Consensus       454 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~  525 (664)
                       ++++.+++.+.+.+ +.+..+|+.....+...|+++++++.++++++.+. -+..+|+....++.+.   |.    .++
T Consensus       124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~  201 (320)
T PLN02789        124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDS  201 (320)
T ss_pred             hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHH
Confidence             56777887777766 56777888888888888888888888888887653 3556777666665544   22    246


Q ss_pred             HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc----CChhHHHHHHHHHHHCCCCCCH-HHHHHHHHh
Q 006010          526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ----SNISHSIDLLNSMMDRGCDPDL-VTCNIFLTA  588 (664)
Q Consensus       526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~  588 (664)
                      ++.+..+++...|.   |...|+.+...+...    ++..+|.+++.+..+  ..|+. .....++..
T Consensus       202 el~y~~~aI~~~P~---N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~  264 (320)
T PLN02789        202 ELKYTIDAILANPR---NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDL  264 (320)
T ss_pred             HHHHHHHHHHhCCC---CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHH
Confidence            77777777665555   677888777777663    344668788777665  34433 334444444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.69  E-value=3.2e-06  Score=78.23  Aligned_cols=187  Identities=13%  Similarity=0.055  Sum_probs=124.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK-PN-TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANA---FTY  440 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~  440 (664)
                      ....+..++..+.+.|++++|...++++...... |. ..++..+..++...|++++|...++++++.. +.+.   ..+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence            5566777778888888899998888888775321 11 1356667778888888888888888888763 2122   234


Q ss_pred             HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH
Q 006010          441 SSLMKGFFES--------GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS  512 (664)
Q Consensus       441 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  512 (664)
                      ..+...+...        |+.++|.+.++.+.... +.+...+..+.....    ..       ...       ......
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~-------~~~-------~~~~~~  171 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR-------NRL-------AGKELY  171 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH-------HHH-------HHHHHH
Confidence            4455555544        66777888888777654 222222222111100    00       000       011225


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      +...+.+.|++++|...+++++...++.......+..+..++.+.|++++|...++.+..
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            667788999999999999999765554434566888999999999999999999998875

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.64  E-value=4.4e-06  Score=87.73  Aligned_cols=143  Identities=12%  Similarity=0.112  Sum_probs=107.4

Q ss_pred             CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH-HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHH
Q 006010          469 VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV-VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTY  547 (664)
Q Consensus       469 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  547 (664)
                      +.+...+-.|.....+.|+.++|..+|+...+.  .|+. .....++.++.+.+++++|...+++.+..++.   +....
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~~~  157 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SAREI  157 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHHHH
Confidence            456778888888888999999999999988875  5664 56777888888999999999999988654444   56677


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHH
Q 006010          548 NILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVM  626 (664)
Q Consensus       548 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  626 (664)
                      ..+..++.+.|++++|..+|+++..  ..|+ ...+..+...                     +...|+.++|...|+++
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~---------------------l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQS---------------------LTRRGALWRARDVLQAG  214 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHH---------------------HHHcCCHHHHHHHHHHH
Confidence            7788888899999999999999887  3444 3334333333                     88889999999999998


Q ss_pred             HHcCCCCChHHHHH
Q 006010          627 LQKFLSPQTSTWER  640 (664)
Q Consensus       627 ~~~~~~~~~~~~~~  640 (664)
                      .+. ..+...-|..
T Consensus       215 ~~~-~~~~~~~~~~  227 (694)
T PRK15179        215 LDA-IGDGARKLTR  227 (694)
T ss_pred             HHh-hCcchHHHHH
Confidence            875 3334444333

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.62  E-value=8.7e-06  Score=71.99  Aligned_cols=119  Identities=16%  Similarity=0.239  Sum_probs=82.2

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHH-HHcCC--HHHH
Q 006010          450 SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGL-CNAGS--VEEA  526 (664)
Q Consensus       450 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A  526 (664)
                      .++.+++...++...+.+ +.+...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            455566666666666655 5667777777777777778888877777777653 22456666666653 55566  4778


Q ss_pred             HHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006010          527 LKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDR  573 (664)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  573 (664)
                      .++++++++.++.   +...+..+...+.+.|++++|+..|+++.+.
T Consensus       130 ~~~l~~al~~dP~---~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        130 REMIDKALALDAN---EVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHhCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            8888877665554   5566777777777788888888888887763

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.61  E-value=7.6e-06  Score=72.36  Aligned_cols=153  Identities=12%  Similarity=0.168  Sum_probs=114.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCH
Q 006010          444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSV  523 (664)
Q Consensus       444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  523 (664)
                      +..|...|+++.+....+.+..    +.        ..+...++.+++...++..+... +.+...|..+...|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence            4567888888876544433221    11        01223677788888888888764 45678999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH-HHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCch
Q 006010          524 EEALKLFNEMLCLEPKSQPDVFTYNILLNAL-CKQSN--ISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGT  600 (664)
Q Consensus       524 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~  600 (664)
                      ++|...|++++...++   +...+..+..++ ...|+  .++|.+++++..+  ..|+......++...           
T Consensus        90 ~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~-----------  153 (198)
T PRK10370         90 DNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASD-----------  153 (198)
T ss_pred             HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHH-----------
Confidence            9999999999876655   777888888864 67777  5999999999998  677665544444432           


Q ss_pred             hhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCCh
Q 006010          601 DFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQT  635 (664)
Q Consensus       601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  635 (664)
                               +.+.|++++|...|+++.+. .+|+.
T Consensus       154 ---------~~~~g~~~~Ai~~~~~aL~l-~~~~~  178 (198)
T PRK10370        154 ---------AFMQADYAQAIELWQKVLDL-NSPRV  178 (198)
T ss_pred             ---------HHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence                     89999999999999999986 44444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=9e-05  Score=65.16  Aligned_cols=50  Identities=18%  Similarity=0.030  Sum_probs=21.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010          270 NGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVA  325 (664)
Q Consensus       270 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  325 (664)
                      ..|+..|++++|++......      +......=+..+.+..+++-|.+.+++|.+
T Consensus       116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34455555555555444311      222222223333444445555555555544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.60  E-value=2.2e-05  Score=75.20  Aligned_cols=146  Identities=16%  Similarity=0.206  Sum_probs=97.3

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHH
Q 006010          447 FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEE  525 (664)
Q Consensus       447 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~  525 (664)
                      +...|++++|+..++.+.... |.|...+......+.+.++.++|.+.+++++..  .|+ ......+..++.+.|++.+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence            445677777777777766654 455666666667777777777777777777764  455 4455667777777777777


Q ss_pred             HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHH
Q 006010          526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNE  605 (664)
Q Consensus       526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~  605 (664)
                      |+.+++..+..++.   |+..|..|..+|...|+..++.....++                                   
T Consensus       393 ai~~L~~~~~~~p~---dp~~w~~LAqay~~~g~~~~a~~A~AE~-----------------------------------  434 (484)
T COG4783         393 AIRILNRYLFNDPE---DPNGWDLLAQAYAELGNRAEALLARAEG-----------------------------------  434 (484)
T ss_pred             HHHHHHHHhhcCCC---CchHHHHHHHHHHHhCchHHHHHHHHHH-----------------------------------
Confidence            77777777543333   6677777777777777776666544443                                   


Q ss_pred             HHHHhhhcCCcchHHHHHHHHHHcCCCCChHHH
Q 006010          606 LAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTW  638 (664)
Q Consensus       606 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  638 (664)
                          |.-.|++++|...+....++ +..+...|
T Consensus       435 ----~~~~G~~~~A~~~l~~A~~~-~~~~~~~~  462 (484)
T COG4783         435 ----YALAGRLEQAIIFLMRASQQ-VKLGFPDW  462 (484)
T ss_pred             ----HHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence                55567777777777777665 34444444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.60  E-value=1.3e-05  Score=70.44  Aligned_cols=127  Identities=17%  Similarity=0.169  Sum_probs=84.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc
Q 006010          441 SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA  520 (664)
Q Consensus       441 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  520 (664)
                      ..+...+...|+-+....+........ +.+.......+....+.|++.+|...+.+..... ++|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            445555666666666666665544332 3455555566777777777777777777776643 55667777777777777


Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          521 GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       521 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      |++++|..-|.+++++.++   +...++.+...+.-.|+++.|..++.....
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~---~p~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         148 GRFDEARRAYRQALELAPN---EPSIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             cChhHHHHHHHHHHHhccC---CchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence            7777777777777655444   455566666667777777777777777765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=5.9e-05  Score=66.30  Aligned_cols=121  Identities=14%  Similarity=0.122  Sum_probs=58.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 006010          234 MDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL----  309 (664)
Q Consensus       234 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----  309 (664)
                      ...|++.|++++|++......      +......=...+.+..+++.|.+.+++|.+..   +..+.+.|..++.+    
T Consensus       115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG  185 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence            344555555555555554411      11111111223344455555555555555431   33344444444433    


Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 006010          310 KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFH  364 (664)
Q Consensus       310 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  364 (664)
                      .+.+..|.-+|++|-+. ..|++.+.+-.+.++...|++++|..+++........
T Consensus       186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~  239 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK  239 (299)
T ss_pred             chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            23455555555555442 3455555555555555555666666555555554433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.57  E-value=1e-05  Score=71.00  Aligned_cols=159  Identities=13%  Similarity=0.052  Sum_probs=102.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH
Q 006010          122 IFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKT  201 (664)
Q Consensus       122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~  201 (664)
                      ..+...+...|+-+.+..+.......  .+.+.......+....+.|++..|+..+.+...    .-++|...|+.+.-+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d~~~~~~lgaa  143 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTDWEAWNLLGAA  143 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCChhhhhHHHHH
Confidence            55556666666666666666664332  344555566677777777777777777777765    233456677777777


Q ss_pred             HHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010          202 VCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRA  281 (664)
Q Consensus       202 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  281 (664)
                      |-+.|+++.|..-|.+..+.. +-+....+.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|
T Consensus       144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence            777777777777777766553 3345566777777777777777777777766553 22555666666667777777777


Q ss_pred             HHHHHHH
Q 006010          282 AKLVDNM  288 (664)
Q Consensus       282 ~~~~~~~  288 (664)
                      .++...-
T Consensus       222 ~~i~~~e  228 (257)
T COG5010         222 EDIAVQE  228 (257)
T ss_pred             Hhhcccc
Confidence            7666543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.55  E-value=5.2e-06  Score=69.29  Aligned_cols=118  Identities=8%  Similarity=-0.015  Sum_probs=83.8

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcC
Q 006010          458 EIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLE  537 (664)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (664)
                      .++++..+.+  |+  .+..+...+...|++++|...|+..+... +.+...|..+..++...|++++|...|++++...
T Consensus        14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4455555433  33  24445667778888888888888887753 3356777888888888888888888888886655


Q ss_pred             CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010          538 PKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF  585 (664)
Q Consensus       538 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  585 (664)
                      ++   +...+..+..++...|++++|+..|++.++  ..|+...+...
T Consensus        89 p~---~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~  131 (144)
T PRK15359         89 AS---HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEI  131 (144)
T ss_pred             CC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHH
Confidence            44   667777888888888888888888888887  56665554433

>PF12854 PPR_1: PPR repeat

Probab=98.54  E-value=1.2e-07  Score=55.67  Aligned_cols=31  Identities=48%  Similarity=0.903  Sum_probs=13.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          258 CFPTPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       258 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      +.||..+|+.||++|++.|++++|.++|++|
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            3444444444444444444444444444433

>PF12854 PPR_1: PPR repeat

Probab=98.52  E-value=1.5e-07  Score=55.31  Aligned_cols=32  Identities=63%  Similarity=1.111  Sum_probs=15.8

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          222 NCEPDIYTYCTLMDGLCKENRLDEAVLLLDEM  253 (664)
Q Consensus       222 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  253 (664)
                      |+.||..+|++|+++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34445555555555555555555555554444

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.52  E-value=0.0022  Score=66.50  Aligned_cols=218  Identities=11%  Similarity=0.059  Sum_probs=126.9

Q ss_pred             hHHHHHHhhCCCCCCCCCChhHHHHHHH--HHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006010           64 PFSDEIFNSTPKLGSYQLGDSTFYSLIQ--HYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLF  141 (664)
Q Consensus        64 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  141 (664)
                      ..|++-.....++.+   +. .|..++.  .+.+.|..++|..+++.....+.. +..++-.+-.+|.+.|..++|..+|
T Consensus        26 kkal~~~~kllkk~P---n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y  100 (932)
T KOG2053|consen   26 KKALAKLGKLLKKHP---NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY  100 (932)
T ss_pred             HHHHHHHHHHHHHCC---Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence            345555555555432   22 2333333  346778888888777666654433 6667777778888888888888888


Q ss_pred             HHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCC----------hhHH
Q 006010          142 HTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGL----------VDNA  211 (664)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~A  211 (664)
                      +.....   .|+......+..+|++-+++.+-.+.--++.+    .++-+...|=+++....+.-.          ..-|
T Consensus       101 e~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK----~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA  173 (932)
T KOG2053|consen  101 ERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYK----NFPKRAYYFWSVISLILQSIFSENELLDPILLALA  173 (932)
T ss_pred             HHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence            887654   45566666777777777766553333333332    122244555556665554321          1235


Q ss_pred             HHHHhhcccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010          212 IQLFREMPVRN-CEPDIYTYCTLMDGLCKENRLDEAVLLLD-EMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMF  289 (664)
Q Consensus       212 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  289 (664)
                      ...++.+.+.+ .-.+..-.......+...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-.++.
T Consensus       174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll  253 (932)
T KOG2053|consen  174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL  253 (932)
T ss_pred             HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            55556655443 11122223333445556778888888873 33333233344444566677777888888888888877


Q ss_pred             HcCC
Q 006010          290 LKGC  293 (664)
Q Consensus       290 ~~g~  293 (664)
                      ..|.
T Consensus       254 ~k~~  257 (932)
T KOG2053|consen  254 EKGN  257 (932)
T ss_pred             HhCC
Confidence            7753

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.52  E-value=3.2e-05  Score=82.19  Aligned_cols=247  Identities=9%  Similarity=0.072  Sum_probs=169.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNT-VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLM  444 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  444 (664)
                      +...+..|+..+...+++++|.++.+...+.  .|+. ..|-.+...+.+.++..++..+                 .++
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence            5667888899998999999999999977765  3333 3333333356666665544443                 233


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHH
Q 006010          445 KGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVE  524 (664)
Q Consensus       445 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  524 (664)
                      .......++.-+..+...+...  ..+..++..+..+|-+.|+.++|..+|+++++.. +-|..+.+.++..|... +.+
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence            3333344444444444455543  2555678889999999999999999999999976 44678899999999988 999


Q ss_pred             HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhh
Q 006010          525 EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFL  603 (664)
Q Consensus       525 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~  603 (664)
                      +|++++.+++.                 .+...+++..+.++|.++..  ..|+... +..++........ -.....++
T Consensus       167 KA~~m~~KAV~-----------------~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~  226 (906)
T PRK14720        167 KAITYLKKAIY-----------------RFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHRE-FTRLVGLL  226 (906)
T ss_pred             HHHHHHHHHHH-----------------HHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhc-cchhHHHH
Confidence            99999998843                 16667799999999999998  4565444 3334444332222 23334556


Q ss_pred             HHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhc----ccchHHHHHH
Q 006010          604 NELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELC----RPKRIQAAIN  656 (664)
Q Consensus       604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~  656 (664)
                      .-|...|.+..+|+++..+++.+.+. -+.|......++++|.    .+.+++++++
T Consensus       227 ~~l~~~y~~~~~~~~~i~iLK~iL~~-~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~  282 (906)
T PRK14720        227 EDLYEPYKALEDWDEVIYILKKILEH-DNKNNKAREELIRFYKEKYKDHSLLEDYLK  282 (906)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHhc-CCcchhhHHHHHHHHHHHccCcchHHHHHH
Confidence            66777788999999999999999985 2335566666666654    3344555544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.50  E-value=0.0001  Score=78.48  Aligned_cols=59  Identities=12%  Similarity=0.111  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010          229 TYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMF  289 (664)
Q Consensus       229 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  289 (664)
                      ++..+..+|-+.|+.+++..+++++.+.. +-++.+.|.+...|... ++++|++++.+..
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV  176 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI  176 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            44445555555555555555555555443 23444555555555544 5555555544443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.48  E-value=1.5e-05  Score=66.52  Aligned_cols=97  Identities=10%  Similarity=-0.069  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH
Q 006010          440 YSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN  519 (664)
Q Consensus       440 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~  519 (664)
                      +..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            4445566667777777777777776655 4566677777777777777777777777777643 3345667777777777


Q ss_pred             cCCHHHHHHHHHHhhhcCC
Q 006010          520 AGSVEEALKLFNEMLCLEP  538 (664)
Q Consensus       520 ~g~~~~A~~~~~~~~~~~~  538 (664)
                      .|++++|+..|+.++...+
T Consensus       105 ~g~~~eAi~~~~~Al~~~p  123 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSY  123 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCC
Confidence            7777777777777765433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.48  E-value=7.5e-05  Score=78.69  Aligned_cols=183  Identities=8%  Similarity=0.026  Sum_probs=139.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006010          398 CKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSV  477 (664)
Q Consensus       398 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  477 (664)
                      ...+...+..|.....+.|.+++|..+++.+.+.. |.+......+...+.+.+++++|+...++..... +.+......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            34568888889999999999999999999999874 5567788888999999999999999999999877 566777888


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc
Q 006010          478 LIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ  557 (664)
Q Consensus       478 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  557 (664)
                      +..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++++....   +....|+.++      
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~---~~~~~~~~~~------  229 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG---DGARKLTRRL------  229 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---cchHHHHHHH------
Confidence            8889999999999999999999842 23468899999999999999999999999964322   2334444433      


Q ss_pred             CChhHHHHHHHHHHHC----CCCCCHHHHHHHHHhhhhh
Q 006010          558 SNISHSIDLLNSMMDR----GCDPDLVTCNIFLTALKEK  592 (664)
Q Consensus       558 g~~~~A~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~  592 (664)
                      +++..-..+++++.-.    |.......+..++..+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (694)
T PRK15179        230 VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR  268 (694)
T ss_pred             HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence            3444556667766533    2333334455566555543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.43  E-value=8.1e-06  Score=68.56  Aligned_cols=132  Identities=14%  Similarity=0.095  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      .|..++..+ ..++...+...++.+....++........-.+...+...|++++|...|+...+..  |+.. +..+...
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~-l~~~a~l   89 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPE-LKPLARL   89 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHH-HHHHHHH
Confidence            344444444 47788888888888764433322223333445567788888888888888888743  4442 2222222


Q ss_pred             hhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          589 LKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       589 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                                      .|+.++...|++++|...++....  -...+..+...++++.+.|++++|++.|++.|
T Consensus        90 ----------------~LA~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   90 ----------------RLARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             ----------------HHHHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence                            345568888888888888876432  24456677788888999999999988887754

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=0.00033  Score=61.26  Aligned_cols=186  Identities=16%  Similarity=0.197  Sum_probs=108.8

Q ss_pred             CChHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006010          381 GKAEDAMKLWKQMME---KG-CKPNTV-VYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHK  455 (664)
Q Consensus       381 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  455 (664)
                      .+.++..+++..+..   .| ..++.. .|..++-+....|+.+.|...++.+...- +.+..+-..-...+...|++++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence            345555555555543   12 233332 23334444555666677777766665542 3343333333334455677777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010          456 AVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC  535 (664)
Q Consensus       456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (664)
                      |+++++.+.+.+ |.|..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-
T Consensus       105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            777777777665 555566666566666666666776666666654 455677777777777777777777777777764


Q ss_pred             cCCCCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHHH
Q 006010          536 LEPKSQPDVFTYNILLNALCKQS---NISHSIDLLNSMMD  572 (664)
Q Consensus       536 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~  572 (664)
                      ..|-   ++..+..+...+.-.|   +.+-|.+.|.+.++
T Consensus       183 ~~P~---n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  183 IQPF---NPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             cCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3332   4445555555544333   45566777777766

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.40  E-value=1.5e-05  Score=66.33  Aligned_cols=122  Identities=13%  Similarity=0.086  Sum_probs=84.9

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCC
Q 006010          460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK  539 (664)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  539 (664)
                      ++...... +.+......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..++++++...+ 
T Consensus         6 ~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-   82 (135)
T TIGR02552         6 LKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-   82 (135)
T ss_pred             HHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence            44444433 2344455666777778888888888888887753 33567777888888888888888888888754332 


Q ss_pred             CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       540 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                        .+...+..+...+...|++++|...+++..+  ..|+...+..+...
T Consensus        83 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~  127 (135)
T TIGR02552        83 --DDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYSELKER  127 (135)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHHHHHHH
Confidence              2556677777788888888888888888887  56666665544444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.39  E-value=0.00012  Score=70.21  Aligned_cols=149  Identities=15%  Similarity=0.114  Sum_probs=116.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC-HHHH
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN-TLTF  195 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~  195 (664)
                      ....+......+...|.+++|+..++.++..  .|.|+..+......+.+.|+..+|.+.+++++.     ..|+ ....
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~-----l~P~~~~l~  377 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA-----LDPNSPLLQ  377 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCccHHH
Confidence            3446666667777889999999999888765  566777788888889999999999999999877     4455 4566


Q ss_pred             HHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006010          196 NLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN  275 (664)
Q Consensus       196 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  275 (664)
                      ..+..++.+.|++.+|+..++...... +.|+..|..|..+|...|+..++.....+                  .|...
T Consensus       378 ~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~  438 (484)
T COG4783         378 LNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALA  438 (484)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhC
Confidence            677888889999999999988887765 67888899999999999888777665444                  34556


Q ss_pred             CChhHHHHHHHHHHHc
Q 006010          276 GELGRAAKLVDNMFLK  291 (664)
Q Consensus       276 g~~~~a~~~~~~~~~~  291 (664)
                      |+++.|...+....+.
T Consensus       439 G~~~~A~~~l~~A~~~  454 (484)
T COG4783         439 GRLEQAIIFLMRASQQ  454 (484)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            8888888887777665

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=0.00078  Score=59.02  Aligned_cols=189  Identities=13%  Similarity=0.059  Sum_probs=87.5

Q ss_pred             CHhHHHHHHHHHHhcccCC-CCcCHH-HHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010          169 LYHRALEFYNHIVNAKHMN-ILPNTL-TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEA  246 (664)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  246 (664)
                      +.++.++++..+......+ ..++.. .|..++-+....|+.+.|...++++...- +-+...-..-.-.+-..|.+++|
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence            4445555555544433233 333433 33334444445556666666665554431 11111111111223345556666


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010          247 VLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS  326 (664)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  326 (664)
                      +++++.+.+.+ +.|.+++-.=+...-..|+--+|++-+.+..+. ...|...|.-+...|...|++++|.-.+++++-.
T Consensus       106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            66666655554 334444444444444455555555555555444 2335556666666666666666666666655543


Q ss_pred             CCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHc
Q 006010          327 KCMPNEVTYGTIINGLVKLG---RAVDGARVLMSMEER  361 (664)
Q Consensus       327 ~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~  361 (664)
                      . +.++..|..+.+.+.-.|   +.+-+.+.+.+..+.
T Consensus       184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            2 223333444444333322   233444444444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.20  E-value=5.1e-05  Score=63.08  Aligned_cols=96  Identities=10%  Similarity=0.105  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 006010           84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNV  163 (664)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (664)
                      .....+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...|+.....  .+.+...+..+...
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~   94 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAEC   94 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence            334444555555555555555555555443 224445555555555555555555555554332  23344445555555


Q ss_pred             HHHcCCHhHHHHHHHHHHh
Q 006010          164 IIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~  182 (664)
                      +...|++++|...|+...+
T Consensus        95 ~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        95 LLALGEPESALKALDLAIE  113 (135)
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            5555555555555555544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.10  E-value=0.00014  Score=70.73  Aligned_cols=122  Identities=13%  Similarity=0.144  Sum_probs=63.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Q 006010          123 FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTV  202 (664)
Q Consensus       123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  202 (664)
                      .++..+...++++.|+++|+++.+.   .|+  ....+++.+...++-.+|.+++++.++.    .+.+..........+
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~----~p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE----NPQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence            4444444555566666666665432   233  2333555555555555666665555541    112344444445555


Q ss_pred             HhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010          203 CRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQ  254 (664)
Q Consensus       203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  254 (664)
                      .+.++++.|+++.+++.... +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus       245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            55666666666666655542 2334456666666666666666665555544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.07  E-value=0.00029  Score=59.16  Aligned_cols=117  Identities=14%  Similarity=0.102  Sum_probs=49.7

Q ss_pred             cCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC--HHHHHHHHHHHHhcCC
Q 006010          131 AHLVEEAIRLFHTMVDEFHCKR-TVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN--TLTFNLVIKTVCRLGL  207 (664)
Q Consensus       131 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~  207 (664)
                      .++...+...++.+...++..+ .......+...+...|++++|...|+.+..   ....|+  ......+...+...|+
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~---~~~d~~l~~~a~l~LA~~~~~~~~  100 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA---NAPDPELKPLARLRLARILLQQGQ  100 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHHcCC
Confidence            4444555444555444322111 122333344445555555555555555544   111111  1122233444445555


Q ss_pred             hhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010          208 VDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDE  252 (664)
Q Consensus       208 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  252 (664)
                      +++|+..++......  .....+.....+|.+.|+.++|...|+.
T Consensus       101 ~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  101 YDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            555555554433221  2233344444555555555555555543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=0.00091  Score=62.82  Aligned_cols=246  Identities=15%  Similarity=0.039  Sum_probs=109.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006010          302 TLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEG  381 (664)
Q Consensus       302 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  381 (664)
                      .....+.+..++..|+..+....+.. +-+..-|.--+..+...++++++.--.+.-.+.... ..........++...+
T Consensus        54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS  131 (486)
T ss_pred             hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence            34456666777777777777777664 223444544555556666666665444433332111 1112333334444444


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHhcCChHHHHHH
Q 006010          382 KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGC-AANAFTYSSL-MKGFFESGKGHKAVEI  459 (664)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~  459 (664)
                      +..+|.+.++.-.         .+           ....++..++....... +|....+..+ ..++.-.|++++|.+.
T Consensus       132 ~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e  191 (486)
T KOG0550|consen  132 DLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE  191 (486)
T ss_pred             HHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence            4444444444111         00           01111111111111111 1222222222 1233445555655555


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhH-------------HHHHHHHHHcCCHHHH
Q 006010          460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY-------------SSMIHGLCNAGSVEEA  526 (664)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-------------~~l~~~~~~~g~~~~A  526 (664)
                      --.+.+.+ ..+....-.-..++--.++.+.|...|++.+..  .|+...-             ..-.+-..+.|++..|
T Consensus       192 a~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A  268 (486)
T KOG0550|consen  192 AIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA  268 (486)
T ss_pred             HHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence            55555433 112221111112233445555666666555543  2332111             1111223355666666


Q ss_pred             HHHHHHhhhcCCC-CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          527 LKLFNEMLCLEPK-SQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       527 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      .+.|.+++.++|. ..|+...|........+.|+..+|+.--+...+
T Consensus       269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~  315 (486)
T KOG0550|consen  269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK  315 (486)
T ss_pred             HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence            6666666555442 334444455555555566666666666665553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.01  E-value=8.8e-05  Score=66.70  Aligned_cols=112  Identities=21%  Similarity=0.283  Sum_probs=88.9

Q ss_pred             HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010          480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN  559 (664)
Q Consensus       480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  559 (664)
                      .-+.+.+++.+|+..|.+++... +-|.+-|..-..+|.+.|.++.|++-.+.+++.++.   -...|..|..+|...|+
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---YSKAYGRLGLAYLALGK  164 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCc
Confidence            34667888999999999998852 335566777888899999999999998888765443   45578888889999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCC
Q 006010          560 ISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQ  597 (664)
Q Consensus       560 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~  597 (664)
                      +++|++.|++.++  +.|+..+|-.-+.........+.
T Consensus       165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  165 YEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999887  88998888888888776665544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.01  E-value=0.00026  Score=68.86  Aligned_cols=121  Identities=17%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006010          372 TLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESG  451 (664)
Q Consensus       372 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  451 (664)
                      .++..+...++++.|+.+++++.+..  |+  ....++..+...++-.+|.+++.+.++.. +.+...+..-...+.+.+
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence            34444444555666666666655542  22  22334445555555555555555555432 334444444444455555


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 006010          452 KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQM  498 (664)
Q Consensus       452 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  498 (664)
                      +++.|+++.+++.... |.+..+|..|..+|...|+++.|+..++.+
T Consensus       249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            5555555555555433 223335555555555555555555554443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.97  E-value=0.00029  Score=56.94  Aligned_cols=102  Identities=18%  Similarity=0.125  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH
Q 006010          474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD----VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI  549 (664)
Q Consensus       474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  549 (664)
                      ++..++..+...|++++|.+.|..++...  |+    ...+..++.++.+.|++++|...|+.++...++.......+..
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            34456666777888888888888887642  22    3456667788888888888888888886555544334456777


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010          550 LLNALCKQSNISHSIDLLNSMMDRGCDPDL  579 (664)
Q Consensus       550 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  579 (664)
                      +..++.+.|++++|...++++.+.  .|+.
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~--~p~~  109 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKR--YPGS  109 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHH--CcCC
Confidence            777888888888888888888873  4443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.94  E-value=0.0003  Score=56.84  Aligned_cols=99  Identities=15%  Similarity=0.135  Sum_probs=76.7

Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHH
Q 006010          508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL----VTCN  583 (664)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~  583 (664)
                      .++..++..+.+.|++++|...|++++...++.......+..+..++.+.|++++|...++++...  .|+.    ..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~   80 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHH
Confidence            356677888899999999999999997555443333456677889999999999999999999873  3442    2222


Q ss_pred             HHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          584 IFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       584 ~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      .+                     +.++.+.|++++|.+.++++.+.
T Consensus        81 ~~---------------------~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        81 KL---------------------GMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HH---------------------HHHHHHhCChHHHHHHHHHHHHH
Confidence            22                     23388999999999999999986

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.89  E-value=2.4e-05  Score=46.83  Aligned_cols=33  Identities=39%  Similarity=0.954  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006010          546 TYNILLNALCKQSNISHSIDLLNSMMDRGCDPD  578 (664)
Q Consensus       546 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  578 (664)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688899999999999999999999998888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.86  E-value=0.00066  Score=58.97  Aligned_cols=105  Identities=7%  Similarity=0.004  Sum_probs=76.3

Q ss_pred             HhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010           70 FNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL--EKSFIFIFKAYGKAHLVEEAIRLFHTMVDE  147 (664)
Q Consensus        70 f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  147 (664)
                      +..+...+.-......+..+...+...|++++|...|+++.+..+.+.  ...+..++.++.+.|++++|+..+.+.+..
T Consensus        22 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         22 ILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             HHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            333333333334556788888899999999999999999987644322  457888899999999999999999998765


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 006010          148 FHCKRTVKSFNSVLNVIIQEGLYHRALEF  176 (664)
Q Consensus       148 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  176 (664)
                        .+.+...+..++..+...|+...+..-
T Consensus       102 --~p~~~~~~~~lg~~~~~~g~~~~a~~~  128 (172)
T PRK02603        102 --NPKQPSALNNIAVIYHKRGEKAEEAGD  128 (172)
T ss_pred             --CcccHHHHHHHHHHHHHcCChHhHhhC
Confidence              344567777888888887775444433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.86  E-value=0.042  Score=55.57  Aligned_cols=54  Identities=17%  Similarity=0.232  Sum_probs=23.4

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhC-CCCcCHHhHHHHHHHHHHcCCHHHHHHHH
Q 006010          477 VLIHGLCEDGKLREARMVWTQMLSR-GCKPDVVAYSSMIHGLCNAGSVEEALKLF  530 (664)
Q Consensus       477 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  530 (664)
                      .|.+-....|.++.|++.--.+.+. .+-|....|+.+.-+-+....+..+-+.|
T Consensus      1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred             HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence            3334444455555555443322221 13344555555544444444443333333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.86  E-value=0.00042  Score=67.84  Aligned_cols=89  Identities=13%  Similarity=0.031  Sum_probs=49.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHH
Q 006010          445 KGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVE  524 (664)
Q Consensus       445 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  524 (664)
                      ..+...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence            34445556666666666665544 3344455555555556666666666666655532 123445555555556666666


Q ss_pred             HHHHHHHHhhh
Q 006010          525 EALKLFNEMLC  535 (664)
Q Consensus       525 ~A~~~~~~~~~  535 (664)
                      +|+..|++++.
T Consensus        88 eA~~~~~~al~   98 (356)
T PLN03088         88 TAKAALEKGAS   98 (356)
T ss_pred             HHHHHHHHHHH
Confidence            66666666544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.84  E-value=0.00097  Score=55.33  Aligned_cols=122  Identities=14%  Similarity=0.078  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q 006010          120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVI  199 (664)
Q Consensus       120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll  199 (664)
                      -...+.....+.|++.+|...|++.. ......|......+.++....+++..|...++.+-+..+.+-.||.  .-.+.
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~a  167 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFA  167 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHH
Confidence            34445555555556666665555543 2223445555555555555555555565555555554433333432  22344


Q ss_pred             HHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010          200 KTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEA  246 (664)
Q Consensus       200 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  246 (664)
                      ..+...|.+.+|+..|+.....  -|+...-......+.+.|+.+++
T Consensus       168 R~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea  212 (251)
T COG4700         168 RTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA  212 (251)
T ss_pred             HHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence            4555555555555555555544  44444444444444555544443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.84  E-value=3.1e-05  Score=46.35  Aligned_cols=33  Identities=42%  Similarity=0.824  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006010          264 TFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN  296 (664)
Q Consensus       264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~  296 (664)
                      +|+.++.+|++.|++++|.++|++|...|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            345555555555555555555555555554444

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.84  E-value=0.0011  Score=52.44  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHH
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL--EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKR-TVKSFNSVL  161 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~  161 (664)
                      +.+.....+-..|+.++|..+|++....|....  ..++..+...+...|++++|+.+++.....++..+ +......+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            456677788889999999999999998765433  44677888889999999999999998876533211 223333344


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHH
Q 006010          162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVC  203 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~  203 (664)
                      -++...|+.++|+..+-..+.       ++...|..-|..|.
T Consensus        83 l~L~~~gr~~eAl~~~l~~la-------~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEALA-------ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            567788999999998877655       34445655555554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.82  E-value=0.05  Score=55.07  Aligned_cols=151  Identities=13%  Similarity=0.138  Sum_probs=70.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 006010          409 IDGLCRVGKPDEAEEILFEMINN----GCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE  484 (664)
Q Consensus       409 i~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  484 (664)
                      |..+.+.|.+-.|.+++.+|.+.    +.++-..--..++.+. -..+..++++-.+.....|...+...       +..
T Consensus       930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al-LvE~h~~~ik~~~~~~~~g~~~dat~-------lle 1001 (1189)
T KOG2041|consen  930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL-LVENHRQTIKELRKIDKHGFLEDATD-------LLE 1001 (1189)
T ss_pred             HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcCcchhhhh-------hhh
Confidence            44456666666666666666542    3222211111111111 12233344444444444442222111       223


Q ss_pred             CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHH
Q 006010          485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSI  564 (664)
Q Consensus       485 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  564 (664)
                      .|-..++-++.+..-.   -.....|..|.+--...|.++.|+..--... --..+-|...+|..+.-+-+....+.-.-
T Consensus      1002 s~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al~Tal~L~-DYEd~lpP~eiySllALaaca~raFGtCS 1077 (1189)
T KOG2041|consen 1002 SGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKDALQTALILS-DYEDFLPPAEIYSLLALAACAVRAFGTCS 1077 (1189)
T ss_pred             hhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHHHHHhhhc-cHhhcCCHHHHHHHHHHHHhhhhhhhhhH
Confidence            3334444444443322   1234455566666667788888876543331 11245566777777665555555554444


Q ss_pred             HHHHHHH
Q 006010          565 DLLNSMM  571 (664)
Q Consensus       565 ~~~~~~~  571 (664)
                      +.|-++.
T Consensus      1078 KAfmkLe 1084 (1189)
T KOG2041|consen 1078 KAFMKLE 1084 (1189)
T ss_pred             HHHHHHH
Confidence            4444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.81  E-value=3.1e-05  Score=57.79  Aligned_cols=49  Identities=27%  Similarity=0.482  Sum_probs=25.1

Q ss_pred             cCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010          520 AGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNS  569 (664)
Q Consensus       520 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  569 (664)
                      .|++++|+.+++++++..+. .++...+..+..+|.+.|++++|+.++++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            35566666666666443332 11333344455666666666666666655

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.81  E-value=0.00058  Score=64.36  Aligned_cols=146  Identities=11%  Similarity=0.111  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHH
Q 006010          439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG-LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGL  517 (664)
Q Consensus       439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  517 (664)
                      +|..++....+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|..+|+..++. ...+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            45666666666666777777777776432 2334444444444 22345566677777777664 344556677777777


Q ss_pred             HHcCCHHHHHHHHHHhhhcCCCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010          518 CNAGSVEEALKLFNEMLCLEPKSQP-DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL  589 (664)
Q Consensus       518 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~  589 (664)
                      .+.|+.+.|..+|++++.. ..... ....|..++..=.+.|+++.+..+.+++.+  .-|+...+..+...+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry  150 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY  150 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence            7777777777777777421 11111 224777777777777777777777777776  344444444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.79  E-value=0.0068  Score=55.62  Aligned_cols=74  Identities=14%  Similarity=0.082  Sum_probs=54.0

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL--EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK  155 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  155 (664)
                      ++..+......+...|+++.|...|+.+....+...  ..+...++.++.+.+++++|+..|++.++.++..|++.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~  106 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID  106 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence            445566667777888899999999988887654322  22346778888888999999999988888766666553

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.77  E-value=0.00047  Score=59.65  Aligned_cols=95  Identities=11%  Similarity=0.054  Sum_probs=57.8

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVV--LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNS  159 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  159 (664)
                      ....|..+...+...|++++|...|+++......+  ...++..+..++...|++++|+..++..+..  .+.....+..
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~  111 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHH
Confidence            34566666777777777777777777776553222  2346667777777777777777777776553  2333445555


Q ss_pred             HHHHHH-------HcCCHhHHHHHHH
Q 006010          160 VLNVII-------QEGLYHRALEFYN  178 (664)
Q Consensus       160 l~~~~~-------~~~~~~~A~~~~~  178 (664)
                      +...+.       +.|++++|+..++
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHH
Confidence            555555       5555554443333

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.77  E-value=4.6e-05  Score=45.19  Aligned_cols=33  Identities=33%  Similarity=0.613  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006010          545 FTYNILLNALCKQSNISHSIDLLNSMMDRGCDP  577 (664)
Q Consensus       545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  577 (664)
                      .+|+.++.+|.+.|+++.|.++|+.|.+.|+.|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            478888888888888888888888888888776

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.77  E-value=5.4e-05  Score=44.88  Aligned_cols=32  Identities=34%  Similarity=0.539  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010          264 TFNVLINGLCKNGELGRAAKLVDNMFLKGCLP  295 (664)
Q Consensus       264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p  295 (664)
                      +|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            44555555555555555555555555444443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.011  Score=55.84  Aligned_cols=85  Identities=20%  Similarity=0.214  Sum_probs=47.7

Q ss_pred             HHcCCChHHHHHHHHHHHhC---CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh-HHHHH--HHHHH
Q 006010          482 LCEDGKLREARMVWTQMLSR---GCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF-TYNIL--LNALC  555 (664)
Q Consensus       482 ~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~  555 (664)
                      ..+.|++..|.+.|.+.+..   .+.|+...|.....+..+.|+.++|+.--++++++      |.. ++..+  ..++.
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l  332 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHL  332 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHH
Confidence            45566677777777666643   23344455555556666677777777776666332      222 12222  23344


Q ss_pred             HcCChhHHHHHHHHHHH
Q 006010          556 KQSNISHSIDLLNSMMD  572 (664)
Q Consensus       556 ~~g~~~~A~~~~~~~~~  572 (664)
                      ..++|++|++-+++..+
T Consensus       333 ~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            55667777777766665

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.75  E-value=0.0032  Score=51.82  Aligned_cols=93  Identities=9%  Similarity=-0.037  Sum_probs=51.8

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHH
Q 006010          476 SVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC  555 (664)
Q Consensus       476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  555 (664)
                      -.+...+...|++++|..+|+-+.... +-+..-|..|..++-..|++++|+..|..+..++++   |+..+-.+..++.
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d---dp~~~~~ag~c~L  114 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID---APQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHHHHHHHHHH
Confidence            334444555666666666666555432 122344555555666666666666666666544433   4455555566666


Q ss_pred             HcCChhHHHHHHHHHHH
Q 006010          556 KQSNISHSIDLLNSMMD  572 (664)
Q Consensus       556 ~~g~~~~A~~~~~~~~~  572 (664)
                      ..|+.+.|.+.|+..+.
T Consensus       115 ~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        115 ACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            66666666666665554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.74  E-value=0.0093  Score=49.74  Aligned_cols=145  Identities=14%  Similarity=0.123  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC-CCCCCHhHH
Q 006010          469 VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP-KSQPDVFTY  547 (664)
Q Consensus       469 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~  547 (664)
                      .|+...--.|..++.+.|+..+|...|++...--..-|......+.++....+++..|...+++..+..+ +..||  ..
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~  163 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH  163 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence            3666666667777888888888888888777644455666777777777788888888888887754333 12233  33


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH
Q 006010          548 NILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML  627 (664)
Q Consensus       548 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  627 (664)
                      -.+.+.+...|++.+|...|+...+  .-|+...-......                     +.++|+.++|..-+..+.
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~---------------------La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEM---------------------LAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHH---------------------HHHhcchhHHHHHHHHHH
Confidence            4566777788888888888888877  45555443333333                     667777776665555554


Q ss_pred             HcCCCCChHHHH
Q 006010          628 QKFLSPQTSTWE  639 (664)
Q Consensus       628 ~~~~~~~~~~~~  639 (664)
                      +. +..+...|.
T Consensus       221 d~-~~r~~~H~r  231 (251)
T COG4700         221 DT-AKRSRPHYR  231 (251)
T ss_pred             HH-HHhcchhHH
Confidence            43 233444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.74  E-value=0.00058  Score=52.40  Aligned_cols=94  Identities=20%  Similarity=0.234  Sum_probs=58.9

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH
Q 006010          475 YSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNAL  554 (664)
Q Consensus       475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~  554 (664)
                      +..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.+...+.   +...+..+...+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~   78 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHHHHHHH
Confidence            3345555666677777777777766542 223355666666777777777777777776433222   334566666677


Q ss_pred             HHcCChhHHHHHHHHHHH
Q 006010          555 CKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       555 ~~~g~~~~A~~~~~~~~~  572 (664)
                      ...|++++|...+.+..+
T Consensus        79 ~~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          79 YKLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHHhHHHHHHHHHHHHc
Confidence            777777777777776654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.72  E-value=0.00055  Score=52.54  Aligned_cols=93  Identities=18%  Similarity=0.196  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 006010           86 FYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVII  165 (664)
Q Consensus        86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (664)
                      +..+...+...|+++.|...++.+.+..+. +...+..++..+...|++++|.+.|......  .+.+...+..++..+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence            334444445555555555555555443322 2234444555555555555555555544332  1222334444445555


Q ss_pred             HcCCHhHHHHHHHHHH
Q 006010          166 QEGLYHRALEFYNHIV  181 (664)
Q Consensus       166 ~~~~~~~A~~~~~~~~  181 (664)
                      ..|++++|...++...
T Consensus        80 ~~~~~~~a~~~~~~~~   95 (100)
T cd00189          80 KLGKYEEALEAYEKAL   95 (100)
T ss_pred             HHHhHHHHHHHHHHHH
Confidence            5555555555554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.71  E-value=0.00098  Score=65.30  Aligned_cols=92  Identities=10%  Similarity=-0.075  Sum_probs=63.9

Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc
Q 006010           88 SLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE  167 (664)
Q Consensus        88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (664)
                      .....+...|+++.|...|++++..++. +..++..++.+|...|++++|+..++.++..  .+.+...|..++.+|...
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence            3455666777777777777777766533 5566777777777777777777777777654  334566677777777777


Q ss_pred             CCHhHHHHHHHHHHh
Q 006010          168 GLYHRALEFYNHIVN  182 (664)
Q Consensus       168 ~~~~~A~~~~~~~~~  182 (664)
                      |++++|...|+++++
T Consensus        84 g~~~eA~~~~~~al~   98 (356)
T PLN03088         84 EEYQTAKAALEKGAS   98 (356)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            777777777777766

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.70  E-value=0.008  Score=56.99  Aligned_cols=128  Identities=16%  Similarity=0.154  Sum_probs=73.1

Q ss_pred             HHHHHHhc-CChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-----cCHH-hH
Q 006010          443 LMKGFFES-GKGHKAVEIWKDMAKN----NCV-YNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCK-----PDVV-AY  510 (664)
Q Consensus       443 l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~-~~  510 (664)
                      +...|... |++++|++.|++..+.    +.+ .-..++..+...+.+.|++++|.++|+++......     .+.. .+
T Consensus       120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~  199 (282)
T PF14938_consen  120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF  199 (282)
T ss_dssp             HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence            33445555 6777777777765542    200 01234556777788889999999999888764322     2222 23


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH--hHHHHHHHHHHHcCC---hhHHHHHHHHHH
Q 006010          511 SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV--FTYNILLNALCKQSN---ISHSIDLLNSMM  571 (664)
Q Consensus       511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~---~~~A~~~~~~~~  571 (664)
                      ...+-++...|+.-.|.+.+++.....++...+.  .....|+.++- .|+   +++|+.-|+.+.
T Consensus       200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCCHHHHCHHHTTSS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHHHHHHHHHHcccC
Confidence            3445566778899999999998865555554442  34555666654 344   445555555543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.69  E-value=0.00099  Score=54.71  Aligned_cols=94  Identities=10%  Similarity=-0.012  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010          121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK  200 (664)
Q Consensus       121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~  200 (664)
                      ...+...+...|++++|.++|+.+...  .+.+..-|..|..++-..|++++|+..|......   . +.|...+-.+..
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---~-~ddp~~~~~ag~  111 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---K-IDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---C-CCCchHHHHHHH
Confidence            334444444555555555555544332  2333444555555555555555555555555442   1 123334444444


Q ss_pred             HHHhcCChhHHHHHHhhccc
Q 006010          201 TVCRLGLVDNAIQLFREMPV  220 (664)
Q Consensus       201 ~~~~~g~~~~A~~~~~~~~~  220 (664)
                      ++...|+.+.|++.|+..+.
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            55555555555555554443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.68  E-value=0.011  Score=54.35  Aligned_cols=186  Identities=11%  Similarity=0.038  Sum_probs=108.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVY---SALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSS  442 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  442 (664)
                      +....-.....+.+.|++++|++.|+++...-..+ ....   -.++.++.+.+++++|...+++.++.........+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            33334445555667788888888888887753322 2221   3455667778888888888888777632212222222


Q ss_pred             HHHHHHh--cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 006010          443 LMKGFFE--SG---------------K---GHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG  502 (664)
Q Consensus       443 l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  502 (664)
                      .+.+.+.  .+               +   ..+|.+.|+.+++.               |=...-..+|...+..+... 
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~-  173 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR-  173 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence            2222221  11               1   12233333333332               22222334444333333221 


Q ss_pred             CCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          503 CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       503 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                        .- ..-..+...|.+.|.+..|..-++.++..-|+..........++.+|...|..++|.++...+.
T Consensus       174 --la-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        174 --LA-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             --HH-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence              00 1112556778899999999999999987667776677778888899999999999988777654

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.67  E-value=0.001  Score=65.10  Aligned_cols=120  Identities=20%  Similarity=0.209  Sum_probs=82.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHhhcccC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 006010          191 NTLTFNLVIKTVCRLGLVDNAIQLFREMPVR--NCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVL  268 (664)
Q Consensus       191 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  268 (664)
                      +......++..+....+.+.+..++-.....  ....-..+..++++.|.+.|..++++.+++.=...|+-||..++|.|
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            4445555566666666677777776666543  11122344567888888888888888888887778888888888888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010          269 INGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLK  310 (664)
Q Consensus       269 i~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  310 (664)
                      ++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            888888888888888888777666555666666666655554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.65  E-value=0.004  Score=59.04  Aligned_cols=113  Identities=13%  Similarity=0.137  Sum_probs=54.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHc----CCCCC--HHHHHHHHH
Q 006010          233 LMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN-GELGRAAKLVDNMFLK----GCLPN--EVTYNTLIH  305 (664)
Q Consensus       233 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~----g~~p~--~~~~~~l~~  305 (664)
                      .+..|...|++..|-+++.++-               ..|... |++++|.+.|++....    | .+.  ..++..+..
T Consensus       100 A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~  163 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD  163 (282)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence            3444555555555554444433               344444 6666666666665332    2 111  234455566


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC-----hh-hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          306 GLCLKGNLDKAVSLLDRMVASKCMPN-----EV-TYGTIINGLVKLGRAVDGARVLMSMEER  361 (664)
Q Consensus       306 ~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~  361 (664)
                      .+.+.|++++|.++|+++.......+     .. .+...+-++...|+...|.+.+++....
T Consensus       164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            66777777777777777665422111     11 1222233445566666666666666544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.65  E-value=0.0024  Score=55.41  Aligned_cols=85  Identities=13%  Similarity=0.053  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHH
Q 006010          156 SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLM  234 (664)
Q Consensus       156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  234 (664)
                      .+..++..+...|++++|...|+++.+..+.  .+ ....+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg  113 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEED--PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            3444444444444555555544444431100  00 01234444444444555555555554444432 22333344444


Q ss_pred             HHHHhcCCh
Q 006010          235 DGLCKENRL  243 (664)
Q Consensus       235 ~~~~~~g~~  243 (664)
                      ..+...|+.
T Consensus       114 ~~~~~~g~~  122 (172)
T PRK02603        114 VIYHKRGEK  122 (172)
T ss_pred             HHHHHcCCh
Confidence            444444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.64  E-value=0.00011  Score=54.76  Aligned_cols=79  Identities=13%  Similarity=0.147  Sum_probs=32.4

Q ss_pred             CCcchHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006010           97 GDFKSLEMVLYRMRREKRV-VLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALE  175 (664)
Q Consensus        97 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  175 (664)
                      |+++.|..+++.+....+. ++...+..++.+|.+.|++++|+++++. .+.  .+.+......++.++.+.|++++|++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4444555555555444321 1222333345555555555555555544 111  01112233333444555555555555


Q ss_pred             HHH
Q 006010          176 FYN  178 (664)
Q Consensus       176 ~~~  178 (664)
                      .++
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.64  E-value=0.00065  Score=58.78  Aligned_cols=104  Identities=11%  Similarity=0.047  Sum_probs=65.6

Q ss_pred             HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHH
Q 006010          507 VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT-CNIF  585 (664)
Q Consensus       507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l  585 (664)
                      ...|..++..+...|++++|...|++++...++......+|..+...+...|++++|+..+++...  +.|+... +..+
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l  112 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence            345667777777888888888888888644332211234677888888888999999998888886  4454332 2222


Q ss_pred             HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHH
Q 006010          586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVM  626 (664)
Q Consensus       586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  626 (664)
                      ...              +..++..+...|++++|...+++.
T Consensus       113 a~i--------------~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        113 AVI--------------CHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHH--------------HHHhhHHHHHcccHHHHHHHHHHH
Confidence            222              112233344778877665555543

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.62  E-value=0.0013  Score=49.89  Aligned_cols=76  Identities=16%  Similarity=0.329  Sum_probs=41.8

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006010          232 TLMDGLCKENRLDEAVLLLDEMQVDGC-FPTPVTFNVLINGLCKNG--------ELGRAAKLVDNMFLKGCLPNEVTYNT  302 (664)
Q Consensus       232 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~g~~p~~~~~~~  302 (664)
                      ..|..+...+++.....+|+.++..|+ .|+..+|+.++...++..        +.-..+.+++.|...+++|+..+|+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            344445555666666666666666666 566666666666554432        12234445555555555555555555


Q ss_pred             HHHHH
Q 006010          303 LIHGL  307 (664)
Q Consensus       303 l~~~~  307 (664)
                      ++..+
T Consensus       110 vl~~L  114 (120)
T PF08579_consen  110 VLGSL  114 (120)
T ss_pred             HHHHH
Confidence            55444

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.0033  Score=57.29  Aligned_cols=121  Identities=13%  Similarity=0.169  Sum_probs=83.0

Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC---CHHHHHHHHHHhhhcC
Q 006010          461 KDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG---SVEEALKLFNEMLCLE  537 (664)
Q Consensus       461 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~  537 (664)
                      +.-...+ |.|...|-.|...|...|+.+.|..-|....+.. .++...+..+..++....   ...++..+|++++..+
T Consensus       146 e~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D  223 (287)
T COG4235         146 ETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD  223 (287)
T ss_pred             HHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence            3333334 5677788888888888888888888888877652 345566666666654332   3667888888887666


Q ss_pred             CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          538 PKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       538 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      +.   |......|...+...|++.+|...|+.|.+  ..|....+..++..
T Consensus       224 ~~---~iral~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~ie~  269 (287)
T COG4235         224 PA---NIRALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLIER  269 (287)
T ss_pred             Cc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHHHH
Confidence            55   666677777788888888888888888887  34444444444443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.00079  Score=60.75  Aligned_cols=99  Identities=13%  Similarity=0.150  Sum_probs=60.9

Q ss_pred             HHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 006010           91 QHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLY  170 (664)
Q Consensus        91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  170 (664)
                      .-+.+.++|.+|...|..++...+ .+...|..-+.+|.+.|.++.|++-.+..+..  .+....+|..|..+|...|++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence            345556666666666666666553 35555666666666677776666666665543  233455666666666666677


Q ss_pred             hHHHHHHHHHHhcccCCCCcCHHHHHH
Q 006010          171 HRALEFYNHIVNAKHMNILPNTLTFNL  197 (664)
Q Consensus       171 ~~A~~~~~~~~~~~~~~~~~~~~~~~~  197 (664)
                      ++|++.|.+.++     +.|+..+|-.
T Consensus       166 ~~A~~aykKaLe-----ldP~Ne~~K~  187 (304)
T KOG0553|consen  166 EEAIEAYKKALE-----LDPDNESYKS  187 (304)
T ss_pred             HHHHHHHHhhhc-----cCCCcHHHHH
Confidence            776666666655     5555555543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.60  E-value=0.076  Score=51.18  Aligned_cols=462  Identities=14%  Similarity=0.136  Sum_probs=235.5

Q ss_pred             HHHhCCCcchHHHHHHHHHhCCCC----cCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH
Q 006010           92 HYANSGDFKSLEMVLYRMRREKRV----VLEKS-FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ  166 (664)
Q Consensus        92 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (664)
                      .+-+.+++.++..+|.++.+....    ...+. -..++.+|.. ++.+.-........+..|..+-...+  ..-...+
T Consensus        15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF--~~L~~Y~   91 (549)
T PF07079_consen   15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLF--KALVAYK   91 (549)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHH--HHHHHHH
Confidence            456788999999999988865322    11122 2355666643 34444444444443332322222222  2223457


Q ss_pred             cCCHhHHHHHHHHHHhcccCCCC-----------cCHHHHHHHHHHHHhcCChhHHHHHHhhcccC----CCCCCHHHHH
Q 006010          167 EGLYHRALEFYNHIVNAKHMNIL-----------PNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR----NCEPDIYTYC  231 (664)
Q Consensus       167 ~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~  231 (664)
                      .+.+.+|.+.+....+.....-.           +|-..=+..+..+...|++.+++.+++++..+    ...-+..+|+
T Consensus        92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd  171 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD  171 (549)
T ss_pred             hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence            78899999888776542101000           11122245566777888888888888877543    2235677777


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006010          232 TLMDGLCKENRLDEAVLLLDEMQV---DGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLC  308 (664)
Q Consensus       232 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~  308 (664)
                      .++-.+.+.        .|-++.+   ..+-|+   |..++..|.+.=.      .++.-.-..+.|.......++....
T Consensus       172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlf  234 (549)
T PF07079_consen  172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLF  234 (549)
T ss_pred             HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHH
Confidence            765555432        2333322   112222   3334444433211      1111000112333333333433332


Q ss_pred             hc--CChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcC
Q 006010          309 LK--GNLDKAVSLLDRMVASKCMPNEVT-YGTIINGLVKLGRAVDGARVLMSMEERKFH----VNEYIYSTLISGLFKEG  381 (664)
Q Consensus       309 ~~--g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~  381 (664)
                      -.  .+..--.++++.....-+.|+... ...+...+..  +.+++..+.+.+......    --..++..++....+.+
T Consensus       235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~  312 (549)
T PF07079_consen  235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV  312 (549)
T ss_pred             hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21  122223333333333334444322 2233333332  444444444443322111    02346777777788888


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHh-c---CChhHHHHHHHHHHHCCCCCCHHHHHHHH---HHH
Q 006010          382 KAEDAMKLWKQMMEKGCKPNTVVYS-------ALIDGLCR-V---GKPDEAEEILFEMINNGCAANAFTYSSLM---KGF  447 (664)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~-~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~  447 (664)
                      +...|.+.+.-+....  |+...-.       .+-+..+. .   .+...-+.+++.....++. ......-|+   .-+
T Consensus       313 ~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~l  389 (549)
T PF07079_consen  313 QTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHL  389 (549)
T ss_pred             hHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHH
Confidence            8888888887766542  3322111       12222221 1   1222333344444443221 111222222   234


Q ss_pred             HhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHc---CCChHHHHHHHHHHHhCCCCcC----HHhHHHHHH
Q 006010          448 FESGK-GHKAVEIWKDMAKNNCVYNEVCYSVLIH----GLCE---DGKLREARMVWTQMLSRGCKPD----VVAYSSMIH  515 (664)
Q Consensus       448 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~  515 (664)
                      -+.|. -++|+++++.+.+-. +.|..+-|.+..    +|..   ...+.+-..+-+-+.+.|+.|-    ...-|.+.+
T Consensus       390 W~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD  468 (549)
T PF07079_consen  390 WEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD  468 (549)
T ss_pred             HhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence            45555 888999999888754 345544443322    2221   2234444444445556677663    334455554


Q ss_pred             H--HHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          516 G--LCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       516 ~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      +  +...|++.++.-.-.-..    .+.|++.+|..++-++....++++|..+++.     ++|+..+++.-+..
T Consensus       469 AEyLysqgey~kc~~ys~WL~----~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dskvqK  534 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLT----KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSKVQK  534 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHH----HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHHHHH
Confidence            4  457899999877655543    2678999999999999999999999999987     46777776655543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.58  E-value=0.0013  Score=64.31  Aligned_cols=120  Identities=13%  Similarity=0.184  Sum_probs=64.7

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH
Q 006010          259 FPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK--GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYG  336 (664)
Q Consensus       259 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  336 (664)
                      +.+......+++.+....+++.+..++.+....  ....-..|..++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            345555555555555555556666665555443  111112234456666666666666666666655566666666666


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006010          337 TIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLF  378 (664)
Q Consensus       337 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  378 (664)
                      .+++.+.+.|++..|.++...|..++...+..++..-+.+|.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~  184 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY  184 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence            666666666666666666665555544444444443333333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.58  E-value=0.0083  Score=61.55  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=47.5

Q ss_pred             CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010          506 DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC  582 (664)
Q Consensus       506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  582 (664)
                      +...|..+.......|++++|...+++++.++    |+...|..+...+...|+.++|.+.++++..  +.|...||
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~----ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~  489 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE----MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL  489 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence            34556666555556677777777777775432    4556677777777777777777777777776  55655553

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.58  E-value=0.0012  Score=62.12  Aligned_cols=128  Identities=11%  Similarity=0.083  Sum_probs=51.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q 006010          121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ-EGLYHRALEFYNHIVNAKHMNILPNTLTFNLVI  199 (664)
Q Consensus       121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll  199 (664)
                      |..+++..-+.+..+.|..+|.+..+...  .+...|...+..-.. .++.+.|.++|+..++.    +..+...|...+
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----f~~~~~~~~~Y~   77 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK----FPSDPDFWLEYL   77 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH----HTT-HHHHHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----CCCCHHHHHHHH
Confidence            44444444444444444444444432211  122223222222222 23333345555444431    223334444444


Q ss_pred             HHHHhcCChhHHHHHHhhcccCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006010          200 KTVCRLGLVDNAIQLFREMPVRNCEPD---IYTYCTLMDGLCKENRLDEAVLLLDEMQV  255 (664)
Q Consensus       200 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  255 (664)
                      ..+.+.|+.+.|+.+|+..... +.++   ...|...+..=.+.|+.+.+.++.+++.+
T Consensus        78 ~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   78 DFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4444445555555555544433 1111   12455555555555555555555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.56  E-value=0.013  Score=52.42  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010           84 STFYSLIQHYANSGDFKSLEMVLYRMRREKR--VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE  147 (664)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  147 (664)
                      ..+......+...|++..|...|+.+....+  +....+...++.++.+.|++++|+..|+.+++.
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3444444445555555555555555544321  222334444455555555555555555554444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.55  E-value=0.00038  Score=48.83  Aligned_cols=57  Identities=18%  Similarity=0.362  Sum_probs=34.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      +...+...|++++|+..|++++...|+   +...|..+..++...|++++|...|+++++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344556666666666666666543322   455666666666666666666666666665

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.52  E-value=0.099  Score=50.42  Aligned_cols=201  Identities=18%  Similarity=0.201  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHc----CCChHHHHHHHHHHHhCCCCcC
Q 006010          438 FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCY-------SVLIHGLCE----DGKLREARMVWTQMLSRGCKPD  506 (664)
Q Consensus       438 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~  506 (664)
                      .++..++....+.++...|.+.+.-+...+  |+...-       ..+-+..+.    .-+...-+.+|+.....++.--
T Consensus       299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq  376 (549)
T PF07079_consen  299 DRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ  376 (549)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence            455666666677777777777776665543  332211       112222221    1133445666777666533211


Q ss_pred             H-HhH-HHHHHHHHHcCC-HHHHHHHHHHhhhcCCCCCCCHhHHHHHH----HHHHH---cCChhHHHHHHHHHHHCCCC
Q 006010          507 V-VAY-SSMIHGLCNAGS-VEEALKLFNEMLCLEPKSQPDVFTYNILL----NALCK---QSNISHSIDLLNSMMDRGCD  576 (664)
Q Consensus       507 ~-~~~-~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~  576 (664)
                      . +.| ..-+.-+.+.|. -++|+++++.++.-.+.   |...-|.+.    .+|.+   ...+.+-+.+-+-+.+.|+.
T Consensus       377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y---D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~  453 (549)
T PF07079_consen  377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY---DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT  453 (549)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence            1 111 122233455565 88899999888542221   433333322    12221   22333444444444566777


Q ss_pred             CCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHH
Q 006010          577 PDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAIN  656 (664)
Q Consensus       577 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  656 (664)
                      |-.+.=..+.+.+.+        .+|       +..+|++.++.-+-.-+.+  +.|++.+++-++-++.-..+++||..
T Consensus       454 ~i~i~e~eian~LaD--------AEy-------Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~  516 (549)
T PF07079_consen  454 PITISEEEIANFLAD--------AEY-------LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWE  516 (549)
T ss_pred             cccccHHHHHHHHHH--------HHH-------HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence            754332222222111        122       7789999998866666555  79999999999999999999999998


Q ss_pred             HHHh
Q 006010          657 KCWS  660 (664)
Q Consensus       657 ~~~~  660 (664)
                      ++.+
T Consensus       517 ~l~~  520 (549)
T PF07079_consen  517 YLQK  520 (549)
T ss_pred             HHHh
Confidence            7764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.52  E-value=0.0097  Score=53.15  Aligned_cols=182  Identities=15%  Similarity=0.083  Sum_probs=109.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHH
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTF  195 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  195 (664)
                      +...+...+..+...|++++|++.|+.+...++..+- ..+...++.++.+.|+++.|...++...+..|.+-.-+...|
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            4556777788888999999999999999887655443 457778899999999999999999999885444321122222


Q ss_pred             HHHHHHHHhc----------CChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 006010          196 NLVIKTVCRL----------GLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTF  265 (664)
Q Consensus       196 ~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  265 (664)
                      ..-+..+...          +...+|...|               ..++.-|=...-..+|...+..+...   .-..- 
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~---------------~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-  144 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEF---------------EELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-  144 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHH---------------HHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHH---------------HHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-
Confidence            2222222111          1122333334               44444444445555665555554432   11111 


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHH
Q 006010          266 NVLINGLCKNGELGRAAKLVDNMFLKGC--LPNEVTYNTLIHGLCLKGNLDKAV  317 (664)
Q Consensus       266 ~~li~~~~~~g~~~~a~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~  317 (664)
                      -.+...|.+.|.+..|..-++.+.+.=.  .........++.+|.+.|..+.+.
T Consensus       145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            2356778889999999988888887621  112245677788888888877544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.52  E-value=0.00043  Score=49.29  Aligned_cols=63  Identities=21%  Similarity=0.295  Sum_probs=37.0

Q ss_pred             HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC-ChhHHHHHHHHHHH
Q 006010          507 VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS-NISHSIDLLNSMMD  572 (664)
Q Consensus       507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~  572 (664)
                      ..+|..++..+...|++++|+..|++++..++.   +...|..+..++...| ++++|++.+++.++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            345555666666666666666666666554433   4455556666666666 46666666666554

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.49  E-value=0.00041  Score=49.25  Aligned_cols=61  Identities=23%  Similarity=0.350  Sum_probs=34.3

Q ss_pred             HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006010          519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNI  584 (664)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  584 (664)
                      ..|++++|+++|++++...|+   +...+..+..+|.+.|++++|.++++++..  ..|+...+..
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~   63 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQ   63 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHH
Confidence            456666666666666554444   555555566666666666666666666665  3455444433

...

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.48  E-value=0.0018  Score=49.20  Aligned_cols=78  Identities=22%  Similarity=0.403  Sum_probs=57.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCChhhHHH
Q 006010          267 VLINGLCKNGELGRAAKLVDNMFLKGC-LPNEVTYNTLIHGLCLKG--------NLDKAVSLLDRMVASKCMPNEVTYGT  337 (664)
Q Consensus       267 ~li~~~~~~g~~~~a~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~  337 (664)
                      ..|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..        +.-..+.+|+.|+..+++|+..+|+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            345555666888888888888888888 888888888888776533        23356677777777777888888877


Q ss_pred             HHHHHHh
Q 006010          338 IINGLVK  344 (664)
Q Consensus       338 ll~~~~~  344 (664)
                      ++..+.+
T Consensus       110 vl~~Llk  116 (120)
T PF08579_consen  110 VLGSLLK  116 (120)
T ss_pred             HHHHHHH
Confidence            7776654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.0056  Score=55.83  Aligned_cols=121  Identities=16%  Similarity=0.178  Sum_probs=91.9

Q ss_pred             HHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHH
Q 006010          495 WTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS---NISHSIDLLNSMM  571 (664)
Q Consensus       495 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~  571 (664)
                      ++.-+..+ +-|...|..|..+|...|+++.|..-|.++.++.++   |...+..+..++..+.   ...++..++++++
T Consensus       145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al  220 (287)
T COG4235         145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD---NPEILLGLAEALYYQAGQQMTAKARALLRQAL  220 (287)
T ss_pred             HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            34334432 446789999999999999999999999999876554   7777888887765443   4668999999999


Q ss_pred             HCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHH
Q 006010          572 DRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQ  643 (664)
Q Consensus       572 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  643 (664)
                      .  ..|+..+-..++..-                    +...|++++|...|+.|.+.  -|...-|..+++
T Consensus       221 ~--~D~~~iral~lLA~~--------------------afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie  268 (287)
T COG4235         221 A--LDPANIRALSLLAFA--------------------AFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE  268 (287)
T ss_pred             h--cCCccHHHHHHHHHH--------------------HHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence            8  688877766666552                    89999999999999999985  333334444443

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.46  E-value=0.00016  Score=41.75  Aligned_cols=28  Identities=39%  Similarity=0.705  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          264 TFNVLINGLCKNGELGRAAKLVDNMFLK  291 (664)
Q Consensus       264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~  291 (664)
                      +|+.++++|++.|++++|.++|++|.+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            3444444444444444444444444433

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.45  E-value=0.00017  Score=41.61  Aligned_cols=29  Identities=31%  Similarity=0.762  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010          546 TYNILLNALCKQSNISHSIDLLNSMMDRG  574 (664)
Q Consensus       546 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  574 (664)
                      +|+.++++|++.|++++|.+++++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            57777777777777777777777777655

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.45  E-value=0.0048  Score=48.88  Aligned_cols=93  Identities=22%  Similarity=0.190  Sum_probs=52.3

Q ss_pred             HHHHHcCCChHHHHHHHHHHHhCCCCcC--HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH
Q 006010          479 IHGLCEDGKLREARMVWTQMLSRGCKPD--VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK  556 (664)
Q Consensus       479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  556 (664)
                      ..++-..|+.++|+.+|++.+..|+...  ...+..+...+...|++++|..++++.+...|+..-+......+..++..
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            4455566677777777777766665443  23455566666677777777777776643222211122222223345566


Q ss_pred             cCChhHHHHHHHHHH
Q 006010          557 QSNISHSIDLLNSMM  571 (664)
Q Consensus       557 ~g~~~~A~~~~~~~~  571 (664)
                      .|+.++|++.+-...
T Consensus        88 ~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   88 LGRPKEALEWLLEAL  102 (120)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            677777776665544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.42  E-value=0.0025  Score=58.86  Aligned_cols=103  Identities=14%  Similarity=0.125  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH----HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH
Q 006010          474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV----VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI  549 (664)
Q Consensus       474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  549 (664)
                      .|...+..+.+.|++++|...|+.++..  .|+.    .++..++.+|...|++++|...|+.++...++.......+..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            4555555556678888888888888875  3442    467778888888999999999999887656655555666666


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010          550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       550 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  580 (664)
                      ++..+...|+.++|...|++.++  ..|+..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~--~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIK--KYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence            77778888999999999998887  456554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.41  E-value=0.00078  Score=47.22  Aligned_cols=57  Identities=19%  Similarity=0.340  Sum_probs=34.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          124 IFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      ++..+...|++++|++.|+.+++.  .+.+...+..++.++...|++++|...|+.+++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345556666666666666666554  233556666666666666666666666666655

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.39  E-value=0.0061  Score=62.54  Aligned_cols=146  Identities=10%  Similarity=-0.027  Sum_probs=95.2

Q ss_pred             CCCCcCHHHHHHHHHHHHh--c---CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc--------CCHhHHHHHHH
Q 006010          112 EKRVVLEKSFIFIFKAYGK--A---HLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE--------GLYHRALEFYN  178 (664)
Q Consensus       112 ~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~  178 (664)
                      ...+.+..+|...+++...  .   +..+.|+.+|++.++.  .|.....|..+..++...        .+...+.+..+
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            3445567777766666433  2   3377888898888775  333445555444433322        12345555555


Q ss_pred             HHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006010          179 HIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGC  258 (664)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  258 (664)
                      +.....  ....+...|..+.......|++++|...+++....+  |+...|..+...+...|+.++|.+.+++....+ 
T Consensus       409 ~a~al~--~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~-  483 (517)
T PRK10153        409 NIVALP--ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR-  483 (517)
T ss_pred             Hhhhcc--cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence            543310  122344567766666667899999999999988875  578889999999999999999999999887753 


Q ss_pred             CCCHHHH
Q 006010          259 FPTPVTF  265 (664)
Q Consensus       259 ~~~~~~~  265 (664)
                       |...+|
T Consensus       484 -P~~pt~  489 (517)
T PRK10153        484 -PGENTL  489 (517)
T ss_pred             -CCCchH
Confidence             444444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.37  E-value=0.00089  Score=47.48  Aligned_cols=51  Identities=18%  Similarity=0.268  Sum_probs=23.2

Q ss_pred             hcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          130 KAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       130 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      ..|++++|++.|+.+...  .+.+...+..++.+|.+.|++++|..+++.+..
T Consensus         3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344445555555444433  223444444444455555555555555544443

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.31  E-value=0.0087  Score=55.33  Aligned_cols=98  Identities=8%  Similarity=0.117  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CCHHHHHHHH
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVV--LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCK-RTVKSFNSVL  161 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~  161 (664)
                      .|........+.|+++.|...|+.+++..+..  ...++..++..|...|++++|+..|..++..++.. ....++..++
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            33333444456688888888888888765432  24677788888888888888888888887653332 2345666667


Q ss_pred             HHHHHcCCHhHHHHHHHHHHh
Q 006010          162 NVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      ..+...|+.++|...|+.+.+
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            777778888888888888776

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.28  E-value=0.0056  Score=52.90  Aligned_cols=50  Identities=22%  Similarity=0.250  Sum_probs=31.3

Q ss_pred             cCHHHHHHHHHHHHh-----cCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010          190 PNTLTFNLVIKTVCR-----LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK  239 (664)
Q Consensus       190 ~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  239 (664)
                      .+..+|..++..|.+     .|..+-....+..|.+.|+..|..+|+.|++.+=+
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK   99 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK   99 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence            355566666666653     25555556666677777777777777777766543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.20  E-value=0.0018  Score=46.04  Aligned_cols=62  Identities=16%  Similarity=0.241  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHh
Q 006010          119 KSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG-LYHRALEFYNHIVN  182 (664)
Q Consensus       119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~  182 (664)
                      ..|..++..+...|++++|+..|.+.++.  .+.++..|..+..++.+.| ++++|++.+++.++
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            34555555555666666666666655543  2334555555566666665 45666666655544

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.18  E-value=0.0073  Score=56.90  Aligned_cols=131  Identities=17%  Similarity=0.034  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCC-CCCHH
Q 006010          404 VYSALIDGLCRVGKPDEAEEILFEMIN----NGCA-ANAFTYSSLMKGFFESGKGHKAVEIWKDMAK----NNC-VYNEV  473 (664)
Q Consensus       404 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~  473 (664)
                      .|..|...|.-.|+++.|+...+.-+.    -|-. .....+..+.+++.-.|+++.|.+.|+....    .+- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            444555556667788888766554322    2211 1234566777788888888888887776433    221 12233


Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhC-----CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010          474 CYSVLIHGLCEDGKLREARMVWTQMLSR-----GCKPDVVAYSSMIHGLCNAGSVEEALKLFNEML  534 (664)
Q Consensus       474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (664)
                      +.-+|...|.-..++++|+.++.+-+..     ...-...++.+|..+|...|..++|+.+.+..+
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4455777777777788888777654321     112234677788888888888888888777664

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.18  E-value=0.01  Score=51.42  Aligned_cols=104  Identities=16%  Similarity=0.196  Sum_probs=62.9

Q ss_pred             CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 006010          224 EPDIYTYCTLMDGLCK-----ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEV  298 (664)
Q Consensus       224 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~  298 (664)
                      ..+-.+|..+++.|.+     .|..+=....+..|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+          
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------  111 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------  111 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence            3467788888888775     35566677778888889999999999999988654 3221 01111111          


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 006010          299 TYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLG  346 (664)
Q Consensus       299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  346 (664)
                           ...|  -.+-+-|++++++|...|+.||..++..+++.+.+.+
T Consensus       112 -----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  112 -----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             -----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence                 0001  1223445666666666666666666666666654443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.15  E-value=0.35  Score=48.78  Aligned_cols=137  Identities=12%  Similarity=0.063  Sum_probs=100.9

Q ss_pred             CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 006010           81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV  160 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  160 (664)
                      .+...|..++.---.....+.++.++..++..- |..-..|...+..-.+.|..+.+.++|++-+..  .+.++..|...
T Consensus        43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y  119 (577)
T KOG1258|consen   43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSY  119 (577)
T ss_pred             hcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHH
Confidence            344567666665555555677888888888644 445557778888888999999999999998765  66777888777


Q ss_pred             HHHHH-HcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC
Q 006010          161 LNVII-QEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR  221 (664)
Q Consensus       161 ~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~  221 (664)
                      ...+. ..|+.+.....|+.+...-+..+ .....|...+..-...+++.....+++.+++.
T Consensus       120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF-~S~~lWdkyie~en~qks~k~v~~iyeRilei  180 (577)
T KOG1258|consen  120 LAFLKNNNGDPETLRDLFERAKSYVGLDF-LSDPLWDKYIEFENGQKSWKRVANIYERILEI  180 (577)
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHhcccch-hccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            66555 45788888889999877433322 23456777888888889999999999998865

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.45  Score=49.82  Aligned_cols=184  Identities=11%  Similarity=0.091  Sum_probs=103.3

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL  161 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  161 (664)
                      ........+..+.+...++-|..+-..-.. +...........+..+.+.|++++|...|-+-+..  ..|     ..++
T Consensus       333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi  404 (933)
T KOG2114|consen  333 IEKDLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVI  404 (933)
T ss_pred             eeccHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHH
Confidence            334455566666666667666655433221 11222334555556666778888888777665432  222     2345


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC
Q 006010          162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN  241 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  241 (664)
                      .-+....+..+-..+++.+.+   .|+. +...-..|+.+|.+.++.+.-.++.+... .|..  ..-....+..+.+.+
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~---~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn  477 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHK---KGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN  477 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHH---cccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence            555555555666666666666   4442 23334567778888888877777776655 3311  112344556666666


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          242 RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      -.++|.-+-.....     .......++   -..|++++|++.+..+
T Consensus       478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL  516 (933)
T ss_pred             hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence            66666665554432     233333333   3457788888777765

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.12  E-value=0.17  Score=45.33  Aligned_cols=74  Identities=11%  Similarity=0.089  Sum_probs=56.8

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKR--VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK  155 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  155 (664)
                      .+..+..-+....+.|++++|...|+.+.++.+  +....+...++-++.+.+++++|+..+++.+..++..|++.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            345666677777888889999888888887643  44566777888888888889988888888888777777753

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.44  Score=49.25  Aligned_cols=346  Identities=11%  Similarity=0.114  Sum_probs=185.7

Q ss_pred             CCCCcCHHHHH-----HHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHH-HHHHhCC
Q 006010          186 MNILPNTLTFN-----LVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRL--DEAVLLL-DEMQVDG  257 (664)
Q Consensus       186 ~~~~~~~~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~-~~~~~~~  257 (664)
                      .|++.+..-|.     .++.-+...+.+..|+++-..+...-..- ...|.....-+.+..+.  +++++.. +++... 
T Consensus       426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-  503 (829)
T KOG2280|consen  426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-  503 (829)
T ss_pred             cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence            45555544443     35666667788888888887775332121 46677777777665332  2233333 333221 


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 006010          258 CFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCL----PNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEV  333 (664)
Q Consensus       258 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  333 (664)
                      . .....|..+..-....|+.+-|..+++.=...+..    .+..-+...+.-+.+.|+.+-...++-.+..+   .+..
T Consensus       504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s  579 (829)
T KOG2280|consen  504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS  579 (829)
T ss_pred             C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence            2 23456777777777888888888877642111100    01112334444455566666666665555543   1111


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH--HHHHHc-CCCCCHHHHHHHHH
Q 006010          334 TYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLW--KQMMEK-GCKPNTVVYSALID  410 (664)
Q Consensus       334 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~li~  410 (664)
                      .+..      ...+...|..++.+..++.   +..   .+-+.|....+. +++..|  +..... -+.+-.........
T Consensus       580 ~l~~------~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~  646 (829)
T KOG2280|consen  580 SLFM------TLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAAN  646 (829)
T ss_pred             HHHH------HHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHH
Confidence            1111      1223444555555544321   111   111122222222 222111  111000 01112222333344


Q ss_pred             HHHhcCChhHHHH----------HHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          411 GLCRVGKPDEAEE----------ILFEMIN-NGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI  479 (664)
Q Consensus       411 ~~~~~~~~~~a~~----------~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  479 (664)
                      ++.+.....-..+          +.+.+.. .+......+.+--+..+...|+..+|.++-.+..    .||-..|-.-+
T Consensus       647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~  722 (829)
T KOG2280|consen  647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKL  722 (829)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHH
Confidence            4444433221111          1112211 1222233344555666777899999998877765    48888888889


Q ss_pred             HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010          480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN  559 (664)
Q Consensus       480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  559 (664)
                      .+++..+++++-.++-+...      .+.-|.-...+|.+.|+.++|.+++.+.    ++       +.-...+|.+.|+
T Consensus       723 ~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv----~~-------l~ekv~ay~~~~~  785 (829)
T KOG2280|consen  723 TALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV----GG-------LQEKVKAYLRVGD  785 (829)
T ss_pred             HHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc----CC-------hHHHHHHHHHhcc
Confidence            99999999998877665543      2446777888999999999999999876    11       1156788899999


Q ss_pred             hhHHHHHHHHHH
Q 006010          560 ISHSIDLLNSMM  571 (664)
Q Consensus       560 ~~~A~~~~~~~~  571 (664)
                      +.+|.++--+-.
T Consensus       786 ~~eAad~A~~~r  797 (829)
T KOG2280|consen  786 VKEAADLAAEHR  797 (829)
T ss_pred             HHHHHHHHHHhc
Confidence            999988665543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.06  E-value=0.006  Score=57.45  Aligned_cols=286  Identities=16%  Similarity=0.100  Sum_probs=157.9

Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHH--HC--CCC-CChhhHHHHHHH
Q 006010          271 GLCKNGELGRAAKLVDNMFLKGCLPNE----VTYNTLIHGLCLKGNLDKAVSLLDRMV--AS--KCM-PNEVTYGTIING  341 (664)
Q Consensus       271 ~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~--~~~-~~~~~~~~ll~~  341 (664)
                      -+|+.|+......+|+..++.|-. |.    .+|..|..+|.-.+++++|+++...=+  ..  |-+ -.......+.+.
T Consensus        26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            478889999999999998887743 33    346666777777788888887643211  10  100 012223334444


Q ss_pred             HHhcCChhHHHHHHHH----HHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006010          342 LVKLGRAVDGARVLMS----MEERKFHV-NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG  416 (664)
Q Consensus       342 ~~~~~~~~~a~~~~~~----~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  416 (664)
                      +-..|.+++|.-...+    ..+.|-.. ....+..+...|...|+.-....    -.+.|-.++.++           .
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-----------~  169 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-----------S  169 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------H
Confidence            4445666666543332    22222111 12233334444443332110000    000011111110           0


Q ss_pred             ChhHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHcCC
Q 006010          417 KPDEAEEILFEMIN----NGC-AANAFTYSSLMKGFFESGKGHKAVEIWKDMAK----NNCV-YNEVCYSVLIHGLCEDG  486 (664)
Q Consensus       417 ~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g  486 (664)
                      .++.|.++|.+-++    .|- -.--..|..|.+.|.-.|+++.|+...+.-..    .|-. .....+..+..++.-.|
T Consensus       170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg  249 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG  249 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence            12334444433222    110 01123556666777778899999877654322    2211 12346777889999999


Q ss_pred             ChHHHHHHHHHHHh----CCC-CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC---CCCCCHhHHHHHHHHHHHcC
Q 006010          487 KLREARMVWTQMLS----RGC-KPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP---KSQPDVFTYNILLNALCKQS  558 (664)
Q Consensus       487 ~~~~A~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g  558 (664)
                      +++.|.+.|+....    .|- .....+..+|.+.|.-..++++|+.++.+-+.+..   ...-....+-.|..+|...|
T Consensus       250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg  329 (639)
T KOG1130|consen  250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG  329 (639)
T ss_pred             ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence            99999998886543    221 22345667788888888899999999876543221   11113456778899999999


Q ss_pred             ChhHHHHHHHHHHH
Q 006010          559 NISHSIDLLNSMMD  572 (664)
Q Consensus       559 ~~~~A~~~~~~~~~  572 (664)
                      ..++|+.+.+...+
T Consensus       330 ~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  330 EHRKALYFAELHLR  343 (639)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999888776653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.05  E-value=0.069  Score=53.63  Aligned_cols=85  Identities=19%  Similarity=0.156  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHH-
Q 006010          436 NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMI-  514 (664)
Q Consensus       436 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-  514 (664)
                      +..+...+...+.+...+.-|-++|..|-+.         ..+++.....++|++|..+-+...+.  .||+  |.... 
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaq  812 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQ  812 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccc--cchHHH
Confidence            3344444444555556666666777665432         23556666777777777776665442  3332  22222 


Q ss_pred             ------------HHHHHcCCHHHHHHHHHHh
Q 006010          515 ------------HGLCNAGSVEEALKLFNEM  533 (664)
Q Consensus       515 ------------~~~~~~g~~~~A~~~~~~~  533 (664)
                                  .+|.++|+-.+|.+++++.
T Consensus       813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL  843 (1081)
T KOG1538|consen  813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQL  843 (1081)
T ss_pred             HhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence                        3445556666666666555

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.05  E-value=0.3  Score=46.26  Aligned_cols=60  Identities=15%  Similarity=0.026  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHH
Q 006010          404 VYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFE-SGKGHKAVEIWKDMAK  465 (664)
Q Consensus       404 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~  465 (664)
                      ....+..+-...|++..|..--+.....  .|....|..|.+.-.. .|+-.++...+.+..+
T Consensus       331 s~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         331 SSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            3333444444455555544444444332  3444444444443322 2555555555555444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.04  E-value=0.0044  Score=44.60  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=38.8

Q ss_pred             HHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010          515 HGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT  581 (664)
Q Consensus       515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  581 (664)
                      ..|.+.+++++|.++++.++...|.   +...|.....++.+.|++++|.+.+++..+  ..|+...
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~   64 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPD   64 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHH
Confidence            4556666777777777776554443   555566666666777777777777777665  4455443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.02  E-value=0.32  Score=46.11  Aligned_cols=312  Identities=15%  Similarity=0.136  Sum_probs=189.0

Q ss_pred             ChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHH--hCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHH--HhcCCHHHH
Q 006010           62 EQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYA--NSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAY--GKAHLVEEA  137 (664)
Q Consensus        62 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A  137 (664)
                      .|-.+...|....+..       .|..+...+.  -.|+-..|++.-.+..+.- ..+...+..++.+.  .-.|++++|
T Consensus        68 sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~ll-ssDqepLIhlLeAQaal~eG~~~~A  139 (531)
T COG3898          68 SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKLL-SSDQEPLIHLLEAQAALLEGDYEDA  139 (531)
T ss_pred             CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHhcCchHHH
Confidence            3455667776554433       4555554443  4577778877766655321 12333455554443  457999999


Q ss_pred             HHHHHHhhhcCCCCCCHH--HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHHHHhcCChhHHHHH
Q 006010          138 IRLFHTMVDEFHCKRTVK--SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKTVCRLGLVDNAIQL  214 (664)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~  214 (664)
                      .+-|+.|+.    .|...  ....|.-.-.+.|..+.|..+-+....     ..|. ...+...+...|..|+++.|+++
T Consensus       140 r~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~-----~Ap~l~WA~~AtLe~r~~~gdWd~AlkL  210 (531)
T COG3898         140 RKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAE-----KAPQLPWAARATLEARCAAGDWDGALKL  210 (531)
T ss_pred             HHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh-----hccCCchHHHHHHHHHHhcCChHHHHHH
Confidence            999999964    23222  222333333466888888888888755     3344 45788899999999999999999


Q ss_pred             HhhcccCC-CCCCHHH--HHHHHHH--HHh-cCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHH
Q 006010          215 FREMPVRN-CEPDIYT--YCTLMDG--LCK-ENRLDEAVLLLDEMQVDGCFPTPVTF-NVLINGLCKNGELGRAAKLVDN  287 (664)
Q Consensus       215 ~~~~~~~~-~~~~~~~--~~~l~~~--~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~  287 (664)
                      .+.-.... +.+++.-  -..|+.+  ... .-+...|...-.+..+  +.||.+-- -.-..++.+.|+..++-.+++.
T Consensus       211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~  288 (531)
T COG3898         211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILET  288 (531)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence            98765442 2333321  1222221  111 2345566665555544  34554322 2335678899999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010          288 MFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS-KCMP-NEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV  365 (664)
Q Consensus       288 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  365 (664)
                      +-+..+.|+.  +.  +..+.+.|+.  ++.-++..... .++| +......+...-...|++..|..--+.....  .|
T Consensus       289 aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~p  360 (531)
T COG3898         289 AWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--AP  360 (531)
T ss_pred             HHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cc
Confidence            9887544443  22  2334455553  33333333221 1233 4556667777778889988887766665544  56


Q ss_pred             CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCC
Q 006010          366 NEYIYSTLISGLF-KEGKAEDAMKLWKQMMEKGCKP  400 (664)
Q Consensus       366 ~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~  400 (664)
                      ....|..|.+.-- ..|+-.++...+-+..+..-.|
T Consensus       361 res~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP  396 (531)
T COG3898         361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP  396 (531)
T ss_pred             hhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence            6777777776654 4599999999998887754333

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.99  E-value=0.013  Score=52.87  Aligned_cols=96  Identities=11%  Similarity=0.153  Sum_probs=68.6

Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHH
Q 006010           87 YSLIQHYANSGDFKSLEMVLYRMRREKR--VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVLNV  163 (664)
Q Consensus        87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~  163 (664)
                      +...-.+.+.|++..|...|...++..+  .....++.+|..++...|++++|..+|..+.+.++..|. ++++.-|..+
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~  224 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS  224 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence            3344455666778888888888777643  344567778888888888888888888877776554443 4677777777


Q ss_pred             HHHcCCHhHHHHHHHHHHh
Q 006010          164 IIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~  182 (664)
                      ..+.|+.++|...|+++.+
T Consensus       225 ~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         225 LGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHhcCHHHHHHHHHHHHH
Confidence            7888888888888888776

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.96  E-value=0.056  Score=50.36  Aligned_cols=138  Identities=9%  Similarity=0.007  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHH
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS---QPDVFTYNILLNALCKQSNISHSIDLLNSMMDR----GCDPDLVT  581 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~  581 (664)
                      ....+..++...+.++++++.|+.++......   ......+-.+...|.+..|+++|..+..++.+.    ++..-...
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k  203 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK  203 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence            33456777777888999999998886432211   112346778888899999999999888877652    22222222


Q ss_pred             HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc----CCCCC-hHHHHHHHHHhcccchHHHHHH
Q 006010          582 CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK----FLSPQ-TSTWERVVQELCRPKRIQAAIN  656 (664)
Q Consensus       582 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~  656 (664)
                      |..+...                .++..+...|+.-+|.+.-++..+.    |..+. ......+++.|...|+.+.|+.
T Consensus       204 yr~~~ly----------------hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~  267 (518)
T KOG1941|consen  204 YRAMSLY----------------HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR  267 (518)
T ss_pred             HHHHHHH----------------HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence            3333222                4566688999999999999888765    43332 2456778999999999999999


Q ss_pred             HHHhhh
Q 006010          657 KCWSNL  662 (664)
Q Consensus       657 ~~~~~l  662 (664)
                      .|.+.+
T Consensus       268 rYe~Am  273 (518)
T KOG1941|consen  268 RYEQAM  273 (518)
T ss_pred             HHHHHH
Confidence            888754

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.95  E-value=0.019  Score=48.24  Aligned_cols=72  Identities=29%  Similarity=0.449  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD-----RGCDPDLVTCN  583 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~  583 (664)
                      +...++..+...|++++|..+.+.++..+|-   +...|..++.+|...|+..+|.+.|+++.+     .|+.|+..+-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPY---DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            4566777788999999999999999877665   888999999999999999999999998873     58999887643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.94  E-value=0.46  Score=46.71  Aligned_cols=102  Identities=12%  Similarity=0.090  Sum_probs=71.9

Q ss_pred             CCCCHhHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcch
Q 006010          540 SQPDVFTY-NILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSG  618 (664)
Q Consensus       540 ~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  618 (664)
                      ..|+..++ +.+++-+.+.|-+++|...+.++... -+|....+..+++.=.+                  .... +...
T Consensus       455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~------------------~~sc-~l~~  514 (568)
T KOG2396|consen  455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKE------------------QESC-NLAN  514 (568)
T ss_pred             cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhh------------------Hhhc-CchH
Confidence            33455544 46777788888899999999998873 23344455555544111                  1222 2677


Q ss_pred             HHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          619 GFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       619 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      +.++++.|... +-.|+..|......-...|..+.+-.++|+.+
T Consensus       515 ~r~~yd~a~~~-fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~  557 (568)
T KOG2396|consen  515 IREYYDRALRE-FGADSDLWMDYMKEELPLGRPENCGQIYWRAM  557 (568)
T ss_pred             HHHHHHHHHHH-hCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence            88899999876 22788999988888889999999999998865

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.93  E-value=0.43  Score=46.14  Aligned_cols=145  Identities=14%  Similarity=0.163  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhH-HHHH
Q 006010          437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNN-CVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY-SSMI  514 (664)
Q Consensus       437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~  514 (664)
                      ..+|..+++...+..-.+.|..+|-++.+.+ ..+++..+++++..++ .|+...|..+|+--...  -||...| .-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            4566777777777777888888888888777 4567777777777554 46777788888765543  3555444 3455


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhcCCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010          515 HGLCNAGSVEEALKLFNEMLCLEPKSQPD--VFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL  589 (664)
Q Consensus       515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~  589 (664)
                      ..+...++-+.|..+|+..+..   +..+  ..+|..++..-..-|+...+..+=++|.+  .-|...+...+.+.+
T Consensus       474 ~fLi~inde~naraLFetsv~r---~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry  545 (660)
T COG5107         474 LFLIRINDEENARALFETSVER---LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY  545 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHH---HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence            6667778888888888865321   1112  45788888877788888888888888876  455555544444443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.87  E-value=0.63  Score=47.05  Aligned_cols=190  Identities=8%  Similarity=-0.001  Sum_probs=108.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006010          436 NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIH  515 (664)
Q Consensus       436 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  515 (664)
                      +..+|...+..-...|+.+.+.-.+++..--- ..-...|-..+.-....|+.+-|..++....+-.++-.+.+-..-..
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~  374 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR  374 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence            45677777777778888888888887765311 12223454555555556888888877776655433323333222233


Q ss_pred             HHHHcCCHHHHHHHHHHhhhcCCCCCCCHh-HHHHHHHHHHHcCChhHHH---HHHHHHHHCCCCCCHHHHHHHHHhhhh
Q 006010          516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVF-TYNILLNALCKQSNISHSI---DLLNSMMDRGCDPDLVTCNIFLTALKE  591 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~ll~~~~~  591 (664)
                      ..-..|+++.|..+++.+.+.-    |+.. .-..-+....+.|+.+.+.   .++....+...  +......+.--...
T Consensus       375 f~e~~~n~~~A~~~lq~i~~e~----pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r  448 (577)
T KOG1258|consen  375 FEESNGNFDDAKVILQRIESEY----PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFAR  448 (577)
T ss_pred             HHHhhccHHHHHHHHHHHHhhC----CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHH
Confidence            3445689999999999885433    3322 1112233345677777777   33333332111  11111111111100


Q ss_pred             hccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccc
Q 006010          592 KLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPK  649 (664)
Q Consensus       592 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  649 (664)
                                      ..+.-.++.+.|..++.++.+. ++++...|..+++.....+
T Consensus       449 ----------------~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  449 ----------------LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             ----------------HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence                            1145567788899999998875 6677788888877766555

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.76  E-value=0.6  Score=45.24  Aligned_cols=457  Identities=11%  Similarity=0.047  Sum_probs=246.5

Q ss_pred             HHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010           68 EIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE  147 (664)
Q Consensus        68 ~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  147 (664)
                      ++-++....   +.+..+|..+++-+...|..++.++.++++.. ..+.-+.+|...+..-...+++.....+|.+-+..
T Consensus        30 rLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k  105 (660)
T COG5107          30 RLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK  105 (660)
T ss_pred             HHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence            444444432   35778999999999999999999999999986 44556778888888877888999999999987653


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCH------hHHHHHHHHHHhcccCCCCcCHH-HHHHHHHHH---H------hcCChhHH
Q 006010          148 FHCKRTVKSFNSVLNVIIQEGLY------HRALEFYNHIVNAKHMNILPNTL-TFNLVIKTV---C------RLGLVDNA  211 (664)
Q Consensus       148 ~~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~---~------~~g~~~~A  211 (664)
                         ..+...|...+.-..+.+..      ....+.|+-....  .++.|... .|+..+..+   -      ++.+++..
T Consensus       106 ---~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~--~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i  180 (660)
T COG5107         106 ---SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGC--AIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI  180 (660)
T ss_pred             ---hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhc--ccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence               55677787776654443311      1233344444331  34444332 344333322   2      23345566


Q ss_pred             HHHHhhcccCCCCCCHHHHHHH------HHHHHh---cC----ChhHHHHHHHHHHh--CCCC----CCHHHHHH-----
Q 006010          212 IQLFREMPVRNCEPDIYTYCTL------MDGLCK---EN----RLDEAVLLLDEMQV--DGCF----PTPVTFNV-----  267 (664)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~l------~~~~~~---~g----~~~~a~~~~~~~~~--~~~~----~~~~~~~~-----  267 (664)
                      +..+..++..-+..-...|+..      ++-...   -|    -+-.|.+.+++...  .|..    .+..+++.     
T Consensus       181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s  260 (660)
T COG5107         181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS  260 (660)
T ss_pred             HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence            6777776654211111122111      111100   01    12345555555432  2211    11222222     


Q ss_pred             ------HHHHHHhcC-----Ch--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 006010          268 ------LINGLCKNG-----EL--GRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVT  334 (664)
Q Consensus       268 ------li~~~~~~g-----~~--~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  334 (664)
                            .|..-...|     +.  .+.--++++.... +.-....|----..+...++-+.|++..+.    |++..+..
T Consensus       261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL  335 (660)
T COG5107         261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSL  335 (660)
T ss_pred             cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCch
Confidence                  221111110     00  0111111111111 011222232222333345556666655443    32222222


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006010          335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK---EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDG  411 (664)
Q Consensus       335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  411 (664)
                      ...+...|--.++-+.....|+.+.+.     ...-...+.+-..   .|+++...+++-+=    ...-..+|...++.
T Consensus       336 ~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr----~~k~t~v~C~~~N~  406 (660)
T COG5107         336 TMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKR----INKLTFVFCVHLNY  406 (660)
T ss_pred             heeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHH----HhhhhhHHHHHHHH
Confidence            222333444445555555555554331     0000011111111   12232222221111    11235667778888


Q ss_pred             HHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCChH
Q 006010          412 LCRVGKPDEAEEILFEMINNG-CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVC-YSVLIHGLCEDGKLR  489 (664)
Q Consensus       412 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~  489 (664)
                      ..+..-.+.|..+|-++.+.+ +.+++..+++++..++ .|+..-|.++|+.-....  ||... -+..+..+...++-.
T Consensus       407 v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~inde~  483 (660)
T COG5107         407 VLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRINDEE  483 (660)
T ss_pred             HHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCcHH
Confidence            888888999999999999988 6778888898888764 678889999998866654  44433 345667778889999


Q ss_pred             HHHHHHHHHHhCCCCcC--HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHH
Q 006010          490 EARMVWTQMLSRGCKPD--VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC  555 (664)
Q Consensus       490 ~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  555 (664)
                      .|..+|+..+.. +..+  ...|..++.--..-|+...+..+=+++..    ..|-..+.......|.
T Consensus       484 naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e----~~pQen~~evF~Sry~  546 (660)
T COG5107         484 NARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE----LVPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH----HcCcHhHHHHHHHHHh
Confidence            999999976653 2333  46888899888899999988888777743    3334444444444443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.74  E-value=0.093  Score=53.55  Aligned_cols=164  Identities=15%  Similarity=0.154  Sum_probs=103.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCcCHHhHH
Q 006010          442 SLMKGFFESGKGHKAVEIWKDMAKNNCVYNE------VCYSVLIHGLCE----DGKLREARMVWTQMLSRGCKPDVVAYS  511 (664)
Q Consensus       442 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~  511 (664)
                      .++...+-.|+.+.+++.+....+.+....+      ..|...+..++.    ..+.+.|.++++.+...  -|+...|.
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl  270 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL  270 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence            3444444455555555555554442211111      123333333332    45788899999999875  57776665


Q ss_pred             HH-HHHHHHcCCHHHHHHHHHHhhhcCCC-CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010          512 SM-IHGLCNAGSVEEALKLFNEMLCLEPK-SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL  589 (664)
Q Consensus       512 ~l-~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~  589 (664)
                      .. .+.+...|++++|++.|++++..... .+.....+--+...+.-.++|++|.+.+.++.+.. .-...+|..+..+|
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence            43 56677889999999999987421111 11223344456677888999999999999999742 22455666666665


Q ss_pred             hhhccCCCCchhhhHHHHHHhhhcCCc-------chHHHHHHHHHH
Q 006010          590 KEKLEAPQDGTDFLNELAIRLFKRQRT-------SGGFKIVEVMLQ  628 (664)
Q Consensus       590 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~  628 (664)
                                          +...|+.       ++|.++++++..
T Consensus       350 --------------------~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  350 --------------------LLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             --------------------HHhhccchhhhhhHHHHHHHHHHHHH
Confidence                                7777777       778888877654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.71  E-value=0.012  Score=42.39  Aligned_cols=54  Identities=19%  Similarity=0.210  Sum_probs=28.0

Q ss_pred             HHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          127 AYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       127 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      .|.+.+++++|++.++.++..  .|.++..|...+.++.+.|++++|...++.+.+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344555555555555555443  233444555555555555555555555555554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=0.42  Score=42.76  Aligned_cols=131  Identities=13%  Similarity=0.035  Sum_probs=63.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-----HH
Q 006010          231 CTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTL-----IH  305 (664)
Q Consensus       231 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l-----~~  305 (664)
                      +.++.++.-.|.+.-...++.++.+...+.++.....|.+.-.+.||.+.|...|++..+..-..|..+.+.+     ..
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            3344444445555555555555555444445555555555555556666655555544433222222222222     22


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010          306 GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERK  362 (664)
Q Consensus       306 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  362 (664)
                      .|.-.+++..|...+.++...+ +.|+..-|.-.-+..-.|+..+|.+.++.|.+..
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3334555556666665555543 2233333322223333466666666666666653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.70  E-value=0.15  Score=42.85  Aligned_cols=57  Identities=18%  Similarity=0.249  Sum_probs=26.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          231 CTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       231 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      ..++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+...|.+.|+.+
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            334444444555555555555544432 223445555555555555555555555444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK11906 transcriptional regulator; Provisional

Probab=96.69  E-value=0.1  Score=51.18  Aligned_cols=122  Identities=11%  Similarity=0.051  Sum_probs=69.5

Q ss_pred             ChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHc---------CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc
Q 006010          452 KGHKAVEIWKDMAKN-NCVYN-EVCYSVLIHGLCE---------DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA  520 (664)
Q Consensus       452 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  520 (664)
                      ..+.|..+|.+.... ...|+ ...|..+..++..         ..+..+|.++-+..++.+ .-|..+...+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            345667777777621 11232 3344444433321         123445666666666654 34566666666666666


Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010          521 GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL  579 (664)
Q Consensus       521 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  579 (664)
                      |+++.|..+|+++..++|+   ....|......+.-.|+.++|.+.+++..+  ..|..
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~  405 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRR  405 (458)
T ss_pred             cchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchh
Confidence            7777777777777554443   334555555555667777777777777665  45543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.43  Score=42.65  Aligned_cols=140  Identities=15%  Similarity=0.128  Sum_probs=76.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHH-----hHHHHHH
Q 006010          441 SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVV-----AYSSMIH  515 (664)
Q Consensus       441 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~  515 (664)
                      ..++....-.|.+.-....+...++...+.++.....+++.-.+.||.+.|...|++..+..-..|..     .......
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            34444444455555555555555555544555555556666666666666666666544321122222     2223333


Q ss_pred             HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010          516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF  585 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  585 (664)
                      .|.-.+++.+|...+.+++..++.   |+..-|.-.-+..-.|+..+|++.++.|.+  ..|...+-+.+
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~~---~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~  325 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDPR---NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV  325 (366)
T ss_pred             heecccchHHHHHHHhhccccCCC---chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence            455566777777777777543332   344444433344456777888888888876  45555544433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.66  E-value=0.063  Score=43.51  Aligned_cols=74  Identities=18%  Similarity=0.150  Sum_probs=61.4

Q ss_pred             CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 006010           81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKR--VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV  154 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  154 (664)
                      .++..+..-.....+.|++++|.+.|+.+...-+  +....+...++.+|.+.|++++|+..+++.++.++..|++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            3556777788888999999999999999998733  4566788899999999999999999999998876666664

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.65  E-value=0.043  Score=42.88  Aligned_cols=95  Identities=17%  Similarity=0.074  Sum_probs=61.9

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhc
Q 006010          126 KAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRL  205 (664)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  205 (664)
                      .+.+..|+.+.|++.|.+.+..  .+..+..||.-.+++.-+|+.++|++-+++.++..+..-..-...|..-...|...
T Consensus        51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            3456777888888888777654  55667778888888888888888888777776632111111112344444556667


Q ss_pred             CChhHHHHHHhhcccCC
Q 006010          206 GLVDNAIQLFREMPVRN  222 (664)
Q Consensus       206 g~~~~A~~~~~~~~~~~  222 (664)
                      |+.+.|+.-|+...+.|
T Consensus       129 g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLG  145 (175)
T ss_pred             CchHHHHHhHHHHHHhC
Confidence            77777777777766655

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.59  E-value=0.0069  Score=44.26  Aligned_cols=67  Identities=15%  Similarity=0.150  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHH
Q 006010          545 FTYNILLNALCKQSNISHSIDLLNSMMDR--GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKI  622 (664)
Q Consensus       545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  622 (664)
                      .+|+.+...|...|++++|++.+++.++.  ...++..   .++..              +..++.++...|++++|.++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~a~~--------------~~~lg~~~~~~g~~~~A~~~   68 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHP---DTANT--------------LNNLGECYYRLGDYEEALEY   68 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHH---HHHHH--------------HHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCH---HHHHH--------------HHHHHHHHHHcCCHHHHHHH
Confidence            46788888999999999999999988853  1222211   11111              23567779999999999999


Q ss_pred             HHHHHH
Q 006010          623 VEVMLQ  628 (664)
Q Consensus       623 ~~~~~~  628 (664)
                      +++..+
T Consensus        69 ~~~al~   74 (78)
T PF13424_consen   69 YQKALD   74 (78)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998865

...

>PRK15331 chaperone protein SicA; Provisional

Probab=96.58  E-value=0.03  Score=46.42  Aligned_cols=95  Identities=11%  Similarity=-0.002  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010          121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK  200 (664)
Q Consensus       121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~  200 (664)
                      ....+.-+...|++++|..+|+-+...  .+-+..-|..|..++-..+++++|+..|........    -|...+--...
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~----~dp~p~f~agq  113 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK----NDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----CCCCccchHHH
Confidence            334444455666677776666665433  233445566666666666666777666666544221    12222334455


Q ss_pred             HHHhcCChhHHHHHHhhcccC
Q 006010          201 TVCRLGLVDNAIQLFREMPVR  221 (664)
Q Consensus       201 ~~~~~g~~~~A~~~~~~~~~~  221 (664)
                      ++...|+.+.|+..|+.....
T Consensus       114 C~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHhC
Confidence            666666666676666666554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.54  E-value=0.0079  Score=43.97  Aligned_cols=65  Identities=22%  Similarity=0.360  Sum_probs=40.6

Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC---CCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS---QPD-VFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      .+++.+...|...|++++|+..|++++......   .|+ ..++..+..++...|++++|++++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            456667777777777777777777775431111   122 34566677777777777777777777654

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.52  E-value=0.036  Score=50.02  Aligned_cols=101  Identities=17%  Similarity=0.231  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      .|+.-+.. .+.|++..|...|...++.-|+..-....+..|..++...|++++|...|..+.+.  .|+..        
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~--------  212 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSP--------  212 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCC--------
Confidence            45554443 45677888888888887666665555666777888888888888888888888762  22221        


Q ss_pred             hhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          589 LKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       589 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                               ++-+.+-.|+.+..+.|+.++|...|+++.++
T Consensus       213 ---------KApdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         213 ---------KAPDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             ---------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                     11122223455588888888888888888886

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.45  E-value=0.46  Score=48.10  Aligned_cols=112  Identities=14%  Similarity=0.077  Sum_probs=57.9

Q ss_pred             HHHHHcCCChHHHHHHHH------HHHhCCCC---cCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH
Q 006010          479 IHGLCEDGKLREARMVWT------QMLSRGCK---PDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI  549 (664)
Q Consensus       479 ~~~~~~~g~~~~A~~~~~------~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  549 (664)
                      ...+...|+.++|..+.-      -+.+-+.+   .+..+...+..-+.+...+.-|-++|.++     +   |   ...
T Consensus       710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~-----g---D---~ks  778 (1081)
T KOG1538|consen  710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM-----G---D---LKS  778 (1081)
T ss_pred             HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh-----c---c---HHH
Confidence            445566777777765531      11111111   12334444444444555566666666665     1   1   224


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHH
Q 006010          550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVM  626 (664)
Q Consensus       550 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  626 (664)
                      ++......++|.+|..+-++..+  ..||.  |....+.                     +....++++|.+.|-++
T Consensus       779 iVqlHve~~~W~eAFalAe~hPe--~~~dV--y~pyaqw---------------------LAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  779 LVQLHVETQRWDEAFALAEKHPE--FKDDV--YMPYAQW---------------------LAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             HhhheeecccchHhHhhhhhCcc--ccccc--cchHHHH---------------------hhhhhhHHHHHHHHHHh
Confidence            55556666777777777666554  33332  2222333                     55566666666666655

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.43  E-value=0.98  Score=43.79  Aligned_cols=31  Identities=16%  Similarity=0.202  Sum_probs=24.0

Q ss_pred             CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006010          543 DVFTYNILLNALCKQSNISHSIDLLNSMMDR  573 (664)
Q Consensus       543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  573 (664)
                      +--.+..++.++.-.|++++|.+..++|...
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            3444557778888889999999999998874

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.045  Score=52.13  Aligned_cols=78  Identities=18%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLT  587 (664)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~  587 (664)
                      .+++.+..++.+.+++.+|+..-++.+..+++   |.-....-..+|...|+++.|...|+++++  +.|+......=+.
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~---N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~  332 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN---NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELI  332 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence            36677788888889999999999888765554   666666677888888999999999999988  7888877777776


Q ss_pred             hhh
Q 006010          588 ALK  590 (664)
Q Consensus       588 ~~~  590 (664)
                      .|.
T Consensus       333 ~l~  335 (397)
T KOG0543|consen  333 KLK  335 (397)
T ss_pred             HHH
Confidence            654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.35  E-value=0.22  Score=50.02  Aligned_cols=131  Identities=20%  Similarity=0.228  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHH
Q 006010          155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLM  234 (664)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  234 (664)
                      ...+.++..+-+.|..+.|+++...-.               .-.....+.|+++.|.++.++..      +...|..|.
T Consensus       296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~---------------~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg  354 (443)
T PF04053_consen  296 DQGQSIARFLEKKGYPELALQFVTDPD---------------HRFELALQLGNLDIALEIAKELD------DPEKWKQLG  354 (443)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHSS-HH---------------HHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHhhcCChH---------------HHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHH
Confidence            345555666666666666655432211               11233445566666665554433      445666666


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006010          235 DGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLD  314 (664)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~  314 (664)
                      ....+.|+++-|++.|.+...         |..|+-.|...|+.+...++.+.....|.      ++....++.-.|+.+
T Consensus       355 ~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~  419 (443)
T PF04053_consen  355 DEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVE  419 (443)
T ss_dssp             HHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HH
T ss_pred             HHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHH
Confidence            666666666666666655442         44455555556666555555555544431      233334444455555


Q ss_pred             HHHHHHH
Q 006010          315 KAVSLLD  321 (664)
Q Consensus       315 ~a~~~~~  321 (664)
                      +..+++.
T Consensus       420 ~cv~lL~  426 (443)
T PF04053_consen  420 ECVDLLI  426 (443)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.35  E-value=1.7  Score=45.76  Aligned_cols=178  Identities=15%  Similarity=0.160  Sum_probs=118.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHH
Q 006010          121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT--VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLV  198 (664)
Q Consensus       121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  198 (664)
                      .-.-+..+.+...++.|+.+...-    +..++  .......+.-+.+.|++++|...|-+...    -+.|.     .+
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~----~le~s-----~V  403 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG----FLEPS-----EV  403 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc----cCChH-----HH
Confidence            445566677888899999887654    12222  22344455566688999999999988765    23343     34


Q ss_pred             HHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 006010          199 IKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGEL  278 (664)
Q Consensus       199 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  278 (664)
                      +.-|....++.+-...++.+.+.|+ .+...-..|+.+|.+.++.+.-.+..+... .|..  ..-....+..+.+.+-.
T Consensus       404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl  479 (933)
T KOG2114|consen  404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL  479 (933)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence            5666677777777888888888884 355566788999999999988777766654 3321  11234556667777777


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010          279 GRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRM  323 (664)
Q Consensus       279 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  323 (664)
                      ++|..+-.....     +......++   -..|++++|++++..+
T Consensus       480 ~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  480 DEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence            777766655422     333444443   3568899999988765

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.41  Score=43.88  Aligned_cols=158  Identities=17%  Similarity=0.151  Sum_probs=96.8

Q ss_pred             HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010          480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN  559 (664)
Q Consensus       480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  559 (664)
                      ......|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+-  .............-+..+.+...
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP--~~~~~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP--LQAQDKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc--ccchhhHHHHHHHHHHHHHHHhc
Confidence            34567788888888888877652 2234566677888888888888888887761  11111111112223444555555


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcC-CCCChHHH
Q 006010          560 ISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKF-LSPQTSTW  638 (664)
Q Consensus       560 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~  638 (664)
                      ..+...+-.+.-.   .|+..-...-                    ++..+...|+.++|.+.+-.+.++. -.-|...-
T Consensus       219 ~~~~~~l~~~~aa---dPdd~~aa~~--------------------lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R  275 (304)
T COG3118         219 TPEIQDLQRRLAA---DPDDVEAALA--------------------LADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR  275 (304)
T ss_pred             CCCHHHHHHHHHh---CCCCHHHHHH--------------------HHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence            5555555555542   4433322222                    2333888888888888887777662 23366777


Q ss_pred             HHHHHHhcccchHHHHHHHHHhhhc
Q 006010          639 ERVVQELCRPKRIQAAINKCWSNLY  663 (664)
Q Consensus       639 ~~l~~~~~~~g~~~~A~~~~~~~l~  663 (664)
                      ..+++.+..-|..+.+...+++.|+
T Consensus       276 k~lle~f~~~g~~Dp~~~~~RRkL~  300 (304)
T COG3118         276 KTLLELFEAFGPADPLVLAYRRKLY  300 (304)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            7888888888877777666777664

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.30  E-value=1.1  Score=42.97  Aligned_cols=82  Identities=18%  Similarity=0.185  Sum_probs=45.8

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHH
Q 006010          476 SVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC  555 (664)
Q Consensus       476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  555 (664)
                      +.-+.-+...|+...|.++-.+..    .|+..-|...+.+++..|++++-.++...        +-++.-|.-++.+|.
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--------KKSPIGYEPFVEACL  248 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--------CCCCCChHHHHHHHH
Confidence            333444555666666666554442    35666666666666666666655554321        112344666666666


Q ss_pred             HcCChhHHHHHHHH
Q 006010          556 KQSNISHSIDLLNS  569 (664)
Q Consensus       556 ~~g~~~~A~~~~~~  569 (664)
                      +.|+..+|..++.+
T Consensus       249 ~~~~~~eA~~yI~k  262 (319)
T PF04840_consen  249 KYGNKKEASKYIPK  262 (319)
T ss_pred             HCCCHHHHHHHHHh
Confidence            66666666666555

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.29  E-value=0.046  Score=53.38  Aligned_cols=66  Identities=9%  Similarity=-0.113  Sum_probs=58.5

Q ss_pred             CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010           81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLE--KSFIFIFKAYGKAHLVEEAIRLFHTMVD  146 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~  146 (664)
                      .++.+++.+..+|...|++++|...|++.+..++....  .+|+.+..+|...|+.++|+..+++.++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999988765332  4699999999999999999999999875

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.26  E-value=0.22  Score=50.90  Aligned_cols=163  Identities=15%  Similarity=0.104  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH------HHHHHHHHHHH----cCCHhHHHHHHHHHHhcccCCCC
Q 006010          120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK------SFNSVLNVIIQ----EGLYHRALEFYNHIVNAKHMNIL  189 (664)
Q Consensus       120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~  189 (664)
                      .+..++...+-.|+-+.+++.+....+..+. ..+.      .|..++..++-    ....+.|.++++.+.+     --
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i-~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~-----~y  263 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENI-RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK-----RY  263 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH-----hC
Confidence            4556666666677777777777665442222 2221      22333332222    3456677777777765     23


Q ss_pred             cCHHHHHH-HHHHHHhcCChhHHHHHHhhcccC--CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 006010          190 PNTLTFNL-VIKTVCRLGLVDNAIQLFREMPVR--NC-EPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTF  265 (664)
Q Consensus       190 ~~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  265 (664)
                      |+...|.. -.+.+...|++++|++.|+.....  .. +.....+--+.-.+.-.+++++|.+.|..+.+.+ ..+..+|
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y  342 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFY  342 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHH
Confidence            55444443 344455567777777777765431  11 1123344455666777778888888888877653 2233334


Q ss_pred             HHHH-HHHHhcCCh-------hHHHHHHHHHH
Q 006010          266 NVLI-NGLCKNGEL-------GRAAKLVDNMF  289 (664)
Q Consensus       266 ~~li-~~~~~~g~~-------~~a~~~~~~~~  289 (664)
                      .-+. .++...|+.       ++|.++|.+..
T Consensus       343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            3332 234455666       77777777764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.093  Score=50.10  Aligned_cols=96  Identities=19%  Similarity=0.145  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010          473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN  552 (664)
Q Consensus       473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  552 (664)
                      .++..+..++.+.+++.+|++.-...+..+ ++|....-.-..+|...|+++.|+..|+++++.+|.   |..+-+.++.
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~---Nka~~~el~~  333 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS---NKAARAELIK  333 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC---cHHHHHHHHH
Confidence            356667888899999999999999998875 567788888889999999999999999999876665   5555566665


Q ss_pred             HHHHcCChh-HHHHHHHHHHH
Q 006010          553 ALCKQSNIS-HSIDLLNSMMD  572 (664)
Q Consensus       553 ~~~~~g~~~-~A~~~~~~~~~  572 (664)
                      +-.+...+. ...++|..|..
T Consensus       334 l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  334 LKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            555544443 44778888885

>PRK15331 chaperone protein SicA; Provisional

Probab=96.16  E-value=0.079  Score=44.03  Aligned_cols=90  Identities=9%  Similarity=-0.015  Sum_probs=65.5

Q ss_pred             HHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010          479 IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS  558 (664)
Q Consensus       479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  558 (664)
                      ...+...|++++|..+|.-+...+ .-+..-|..|..++-..+++++|+..|..+.....+   |+..+-....++...|
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p~f~agqC~l~l~  119 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCccchHHHHHHHhC
Confidence            344567888888888888777654 234556777788888888888888888877544432   3444455677888888


Q ss_pred             ChhHHHHHHHHHHH
Q 006010          559 NISHSIDLLNSMMD  572 (664)
Q Consensus       559 ~~~~A~~~~~~~~~  572 (664)
                      +.+.|...|+...+
T Consensus       120 ~~~~A~~~f~~a~~  133 (165)
T PRK15331        120 KAAKARQCFELVNE  133 (165)
T ss_pred             CHHHHHHHHHHHHh
Confidence            88888888888886

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.11  E-value=0.099  Score=51.19  Aligned_cols=65  Identities=9%  Similarity=0.015  Sum_probs=56.4

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-H---HHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          115 VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-V---KSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      +.....++.+..+|...|++++|+..|++.++.   .|+ .   .+|..+..+|...|++++|+..++++++
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456778999999999999999999999998774   343 3   4599999999999999999999999987

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.10  E-value=0.13  Score=40.37  Aligned_cols=53  Identities=36%  Similarity=0.580  Sum_probs=30.5

Q ss_pred             HHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          517 LCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       517 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      ....|+.+.|++.|.+.++.-|.   +...||.-..++.-+|+.++|++-+++.++
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            44556666666666666544332   445566666666666666666666666655

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=1.1  Score=41.23  Aligned_cols=28  Identities=14%  Similarity=-0.022  Sum_probs=12.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          261 TPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       261 ~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      |...-..+...+...|+.+.|.+.+-.+
T Consensus       235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~  262 (304)
T COG3118         235 DVEAALALADQLHLVGRNEAALEHLLAL  262 (304)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3333344444445555555554444433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.93  E-value=1.7  Score=41.74  Aligned_cols=80  Identities=16%  Similarity=0.169  Sum_probs=36.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 006010          408 LIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGK  487 (664)
Q Consensus       408 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  487 (664)
                      .+.-+...|+...|.++-.+..    -|+...|...+.+++..+++++-.++...      .-++.-|...+.+|...|+
T Consensus       183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence            3344444555544444433331    24445555555555555555544443221      1223444455555555555


Q ss_pred             hHHHHHHHHH
Q 006010          488 LREARMVWTQ  497 (664)
Q Consensus       488 ~~~A~~~~~~  497 (664)
                      ..+|..+...
T Consensus       253 ~~eA~~yI~k  262 (319)
T PF04840_consen  253 KKEASKYIPK  262 (319)
T ss_pred             HHHHHHHHHh
Confidence            5555544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.86  E-value=0.39  Score=39.05  Aligned_cols=88  Identities=10%  Similarity=0.136  Sum_probs=63.9

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHH
Q 006010          115 VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKR-TVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTL  193 (664)
Q Consensus       115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  193 (664)
                      ..+...+..-+....+.|++++|++.|+.+...++..+ ...+-..++.++.+.+++++|...+++.++..|..-  + .
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp--~-v   83 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP--N-V   83 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC--C-c
Confidence            33455666667777899999999999999977765544 345677899999999999999999999998544332  2 2


Q ss_pred             HHHHHHHHHHhc
Q 006010          194 TFNLVIKTVCRL  205 (664)
Q Consensus       194 ~~~~ll~~~~~~  205 (664)
                      -|...+.+++..
T Consensus        84 dYa~Y~~gL~~~   95 (142)
T PF13512_consen   84 DYAYYMRGLSYY   95 (142)
T ss_pred             cHHHHHHHHHHH
Confidence            344445554443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.85  E-value=2.8  Score=43.69  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=83.1

Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLT  587 (664)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~  587 (664)
                      -+.+--+.-+...|+..+|.++-.+.      .-||...|-.-+.++...+++++-+++-+.+..      +..|.-++.
T Consensus       685 lSl~dTv~~li~~g~~k~a~ql~~~F------kipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe  752 (829)
T KOG2280|consen  685 LSLHDTVTTLILIGQNKRAEQLKSDF------KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE  752 (829)
T ss_pred             CcHHHHHHHHHHccchHHHHHHHHhc------CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence            34555566677789999999998887      557888888888899999999988887777652      344556677


Q ss_pred             hhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHH
Q 006010          588 ALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCW  659 (664)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  659 (664)
                      +                     +.+.|+.++|.+++-+...     .+    ..+.+|.+.|++.+|.+.--
T Consensus       753 ~---------------------c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  753 A---------------------CLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             H---------------------HHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence            7                     7888999999988877532     11    57788888899988887543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.84  E-value=1.2  Score=39.48  Aligned_cols=87  Identities=11%  Similarity=0.092  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHH
Q 006010          155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLM  234 (664)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  234 (664)
                      ..|..-..+|....+|++|...+.+..+.    ...+...|.       ..+.++.|.-+.+++.+..  .-+..|+--.
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~----yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs   98 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG----YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKAS   98 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHH----HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHH
Confidence            34555566667777788777777776541    111222221       1123445555555554431  1233455556


Q ss_pred             HHHHhcCChhHHHHHHHHHH
Q 006010          235 DGLCKENRLDEAVLLLDEMQ  254 (664)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~  254 (664)
                      ..|..+|.++.|-..+++..
T Consensus        99 ~lY~E~GspdtAAmaleKAa  118 (308)
T KOG1585|consen   99 ELYVECGSPDTAAMALEKAA  118 (308)
T ss_pred             HHHHHhCCcchHHHHHHHHH
Confidence            66667777666666665543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.81  E-value=0.19  Score=40.41  Aligned_cols=47  Identities=23%  Similarity=0.290  Sum_probs=23.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 006010          259 FPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK-GCLPNEVTYNTLIH  305 (664)
Q Consensus       259 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~  305 (664)
                      .|+..+..+++.+|+.+|++..|.++++..... +++.+...|..|+.
T Consensus        49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            355555555555555555555555555554333 44444445555544

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.81  E-value=0.44  Score=38.32  Aligned_cols=53  Identities=8%  Similarity=-0.019  Sum_probs=42.4

Q ss_pred             CCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHhh
Q 006010          537 EPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD-RGCDPDLVTCNIFLTAL  589 (664)
Q Consensus       537 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~  589 (664)
                      .....|+..+..+++.+|+..|++..|+++++...+ .+++.+..+|..++..+
T Consensus        45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            345678888888888888888899999988888875 46777788888888875

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.73  E-value=0.65  Score=43.62  Aligned_cols=193  Identities=13%  Similarity=0.086  Sum_probs=92.3

Q ss_pred             cCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CC---CCHHHHHHHHHHHHhcCC
Q 006010          380 EGKAEDAMKLWKQMMEK--GCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG--CA---ANAFTYSSLMKGFFESGK  452 (664)
Q Consensus       380 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~  452 (664)
                      ..+.++|+..|.+...+  +......++..+..+.++.|.+++++..--..++.-  ..   .-...|..+..++.+.-+
T Consensus        19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~   98 (518)
T KOG1941|consen   19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE   98 (518)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555544432  001122344445555566666555544322111100  00   012334445555555555


Q ss_pred             hHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-----CcCHHhHHHHHHHHHHcCCH
Q 006010          453 GHKAVEIWKDMAKN-NCVY---NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-----KPDVVAYSSMIHGLCNAGSV  523 (664)
Q Consensus       453 ~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~  523 (664)
                      +.+++.+-+.-... |..+   ......++..++...+.++++++.|+...+.-.     .....++..|...|.+..++
T Consensus        99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~  178 (518)
T KOG1941|consen   99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY  178 (518)
T ss_pred             hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence            55555554443321 1111   112233355566666677777777776654211     11224666777777777777


Q ss_pred             HHHHHHHHHhhhcCCCCCC-CH------hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          524 EEALKLFNEMLCLEPKSQP-DV------FTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       524 ~~A~~~~~~~~~~~~~~~~-~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      ++|.-+..++..+...... |.      .....|.-++...|...+|.+.-++..+
T Consensus       179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k  234 (518)
T KOG1941|consen  179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK  234 (518)
T ss_pred             hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            7777666655433222221 11      1222344456677777777777766553

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.57  E-value=1.7  Score=39.22  Aligned_cols=55  Identities=18%  Similarity=0.181  Sum_probs=34.2

Q ss_pred             HHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010          272 LCKNGELGRAAKLVDNMFLKGC--LPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS  326 (664)
Q Consensus       272 ~~~~g~~~~a~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  326 (664)
                      -.+.|++++|.+.|+.+..+-+  +-...+...++.++.+.++++.|....++....
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            3456777777777777765411  112345555666677777777777777776664

>PRK11906 transcriptional regulator; Provisional

Probab=95.54  E-value=1.3  Score=43.86  Aligned_cols=150  Identities=14%  Similarity=0.125  Sum_probs=105.6

Q ss_pred             ChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 006010          417 KPDEAEEILFEMINNG-CAA-NAFTYSSLMKGFFES---------GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED  485 (664)
Q Consensus       417 ~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  485 (664)
                      ..+.|..+|.+..... ..| ....|..+..++...         .+..+|.+.-++..+.+ +.|..+...+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            4578888999998321 233 355565555544322         23456777788888877 67888888888888888


Q ss_pred             CChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHH
Q 006010          486 GKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSI  564 (664)
Q Consensus       486 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  564 (664)
                      ++++.|...|++....  .|| ..+|......+.-+|+.++|.+.++++++++|. +....+....++.|+.. ..++|+
T Consensus       352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~-~~~~~~~~~~~~~~~~~-~~~~~~  427 (458)
T PRK11906        352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR-RRKAVVIKECVDMYVPN-PLKNNI  427 (458)
T ss_pred             cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch-hhHHHHHHHHHHHHcCC-chhhhH
Confidence            9999999999999985  566 456777777778899999999999998765542 22333444455566544 567888


Q ss_pred             HHHHHHH
Q 006010          565 DLLNSMM  571 (664)
Q Consensus       565 ~~~~~~~  571 (664)
                      .++-+-.
T Consensus       428 ~~~~~~~  434 (458)
T PRK11906        428 KLYYKET  434 (458)
T ss_pred             HHHhhcc
Confidence            8776544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.47  E-value=0.46  Score=44.10  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=49.6

Q ss_pred             cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHH----HHHHHHHHhcC
Q 006010          131 AHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTF----NLVIKTVCRLG  206 (664)
Q Consensus       131 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~g  206 (664)
                      .|+..+|...++++++.  .|.|..+++-.=.++.-.|+...-...++++..   . -.+|...|    ....-++...|
T Consensus       116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip---~-wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP---K-WNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc---c-cCCCCcHHHHHHHHHHhhHHHhc
Confidence            34444444445554443  334444444444444455555554555544433   1 11222111    11222223445


Q ss_pred             ChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006010          207 LVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLL  250 (664)
Q Consensus       207 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  250 (664)
                      -+++|.+.-++..+.+ +.|..+-.+..+.+--.|+..++.+..
T Consensus       190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM  232 (491)
T KOG2610|consen  190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFM  232 (491)
T ss_pred             cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHH
Confidence            5555555555544444 344444445555555555555554443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.44  E-value=2.4  Score=40.08  Aligned_cols=172  Identities=16%  Similarity=0.130  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHH
Q 006010          438 FTYSSLMKGFFESGKGH---KAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMI  514 (664)
Q Consensus       438 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~  514 (664)
                      .++..++.+|...+..+   +|.++++.+.... +.....+..-+..+.+.++.+++.+++.+|+..- .-....+...+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence            45667777887777654   4555555554433 3334555555666667888899999999988752 21223444444


Q ss_pred             HHH---HHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH-HH-HHHH--HcCC------hhHHHHHHHHHHHC-CCCCCHH
Q 006010          515 HGL---CNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI-LL-NALC--KQSN------ISHSIDLLNSMMDR-GCDPDLV  580 (664)
Q Consensus       515 ~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~~--~~g~------~~~A~~~~~~~~~~-~~~p~~~  580 (664)
                      ..+   .. .....|...+..++.......+|. .... ++ ..+.  +.++      .+....++....+. +.+.+..
T Consensus       163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~  240 (278)
T PF08631_consen  163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE  240 (278)
T ss_pred             HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence            443   33 334566666666653333333332 1111 11 1111  1111      33344444433321 2233333


Q ss_pred             HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH
Q 006010          581 TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML  627 (664)
Q Consensus       581 ~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  627 (664)
                      +...+...+-+              -+..+.+.++|++|.++++-..
T Consensus       241 ~~~a~~~LLW~--------------~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  241 AASAIHTLLWN--------------KGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHH--------------HHHHHHhhcCHHHHHHHHHHHH
Confidence            32222222111              2233888999999999988654

It is also involved in sporulation [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.42  E-value=2.2  Score=42.34  Aligned_cols=61  Identities=21%  Similarity=0.258  Sum_probs=39.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          511 SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      ..+..++.+.|+.++|++.+.++++..+ ..-+......|+.++...+.+.++..++.+--+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            4455666677777777777777753222 222344566677777777777777777777643

The molecular function of this protein is uncertain.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.42  E-value=0.51  Score=40.34  Aligned_cols=133  Identities=10%  Similarity=0.070  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHh--HHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH
Q 006010          472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVA--YSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI  549 (664)
Q Consensus       472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  549 (664)
                      ...|..++.... .+.. +.....+++....-.....+  -..+...+..+|++++|+..++..+....+.......--.
T Consensus        54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR  131 (207)
T COG2976          54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR  131 (207)
T ss_pred             HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            345555555543 2223 44444455554311111111  1233455667777777777777764211110001111122


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       550 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      |.+.....|.+++|+..++...+.+       |..++.-                .-|+++...|+-++|..-|++..+.
T Consensus       132 LArvq~q~~k~D~AL~~L~t~~~~~-------w~~~~~e----------------lrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         132 LARVQLQQKKADAALKTLDTIKEES-------WAAIVAE----------------LRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHHHHhhhHHHHHHHHhcccccc-------HHHHHHH----------------HhhhHHHHcCchHHHHHHHHHHHHc
Confidence            3345667777777777777665422       2222222                1234477777777777777777765

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.37  E-value=2.1  Score=39.08  Aligned_cols=222  Identities=21%  Similarity=0.174  Sum_probs=138.2

Q ss_pred             cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 006010          380 EGKAEDAMKLWKQMMEKGCKP-NTVVYSALIDGLCRVGKPDEAEEILFEMINN-GCAANAFTYSSLMKGFFESGKGHKAV  457 (664)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~  457 (664)
                      .+....+...+.......... ....+......+...++...+...+...... ........+......+...+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            355566666666665543221 2456666777777888888888888777652 22445566666777777777888888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHH-HHHcCCChHHHHHHHHHHHhCCCCc----CHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 006010          458 EIWKDMAKNNCVYNEVCYSVLIH-GLCEDGKLREARMVWTQMLSRGCKP----DVVAYSSMIHGLCNAGSVEEALKLFNE  532 (664)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~  532 (664)
                      +.+.........+ ......... .+...|+++.|...+.+....  .|    ....+......+...++.+.|...+.+
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  192 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEK  192 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence            8888777654222 122222233 677888888888888887552  33    233444444556677788888888888


Q ss_pred             hhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhh
Q 006010          533 MLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLF  611 (664)
Q Consensus       533 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~  611 (664)
                      ++...+..  ....+..+...+...+++++|...+.....  ..|+ ...+......                     +.
T Consensus       193 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~  247 (291)
T COG0457         193 ALKLNPDD--DAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALL---------------------LL  247 (291)
T ss_pred             HHhhCccc--chHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHH---------------------HH
Confidence            75322211  345666777777777888888888888876  3444 2222222222                     33


Q ss_pred             hcCCcchHHHHHHHHHHc
Q 006010          612 KRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       612 ~~g~~~~A~~~~~~~~~~  629 (664)
                      ..|.++++...+.+..+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         248 ELGRYEEALEALEKALEL  265 (291)
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            666777888777777763

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.37  E-value=2.9  Score=40.62  Aligned_cols=100  Identities=13%  Similarity=0.019  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHh---cCChhHHHHHHhhcccCCCCCCHHHHHH
Q 006010          156 SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCR---LGLVDNAIQLFREMPVRNCEPDIYTYCT  232 (664)
Q Consensus       156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~  232 (664)
                      +...++-+|....+++..+++++.+.......+.-...+-....-++.+   .|+.++|++++..+....-.+++.+|..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            3445555677777888888888887652111111122222234445555   7888888888877544444677777777


Q ss_pred             HHHHHHh---------cCChhHHHHHHHHHHh
Q 006010          233 LMDGLCK---------ENRLDEAVLLLDEMQV  255 (664)
Q Consensus       233 l~~~~~~---------~g~~~~a~~~~~~~~~  255 (664)
                      +.+.|-.         ....++|...|.+.-.
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            7766643         1124556666655544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.33  E-value=0.77  Score=46.25  Aligned_cols=161  Identities=13%  Similarity=0.129  Sum_probs=108.3

Q ss_pred             HHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010           90 IQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL  169 (664)
Q Consensus        90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (664)
                      .+...-.++++++.+....-.- -+..+......++..+.+.|..+.|+++-..          +   ..-.....+.|+
T Consensus       268 fk~av~~~d~~~v~~~i~~~~l-l~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D----------~---~~rFeLAl~lg~  333 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNL-LPNIPKDQGQSIARFLEKKGYPELALQFVTD----------P---DHRFELALQLGN  333 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHT-GGG--HHHHHHHHHHHHHTT-HHHHHHHSS-----------H---HHHHHHHHHCT-
T ss_pred             HHHHHHcCChhhhhhhhhhhhh-cccCChhHHHHHHHHHHHCCCHHHHHhhcCC----------h---HHHhHHHHhcCC
Confidence            4566777888887766641111 1233455678888889999999999886422          2   233455678899


Q ss_pred             HhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010          170 YHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLL  249 (664)
Q Consensus       170 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  249 (664)
                      ++.|.++.+..         ++...|..|.....+.|+++-|.+.|++...         +..|+-.|.-.|+.+.-.++
T Consensus       334 L~~A~~~a~~~---------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl  395 (443)
T PF04053_consen  334 LDIALEIAKEL---------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL  395 (443)
T ss_dssp             HHHHHHHCCCC---------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHHHHHHHhc---------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence            99998876543         3667999999999999999999999988762         56677778889998888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          250 LDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      .+.....|      -++....++.-.|+.++..+++.+.
T Consensus       396 ~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  396 AKIAEERG------DINIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            87777664      2455556666778888888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.13  E-value=0.072  Score=33.47  Aligned_cols=30  Identities=27%  Similarity=0.489  Sum_probs=15.7

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEP  538 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (664)
                      ++..+..+|...|++++|+++|+++++..|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P   32 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDP   32 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            344455555555555555555555544333

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.04  E-value=0.083  Score=33.20  Aligned_cols=39  Identities=15%  Similarity=0.280  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 006010          120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV  160 (664)
Q Consensus       120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  160 (664)
                      ++..+...|.+.|++++|+++|+++++.  .+.+...|..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence            4555566666666666666666666554  33444444433

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.95  E-value=1.9  Score=36.11  Aligned_cols=50  Identities=14%  Similarity=0.123  Sum_probs=19.7

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010          240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMF  289 (664)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  289 (664)
                      .|.+++.....+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+.
T Consensus       145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia  194 (221)
T COG4649         145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA  194 (221)
T ss_pred             cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence            44444444444443333322222223333333344444444444444443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.91  E-value=0.74  Score=38.41  Aligned_cols=125  Identities=14%  Similarity=0.153  Sum_probs=77.9

Q ss_pred             HHcCCChHHHHHHHHHHHhCCCCcCH-HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh-HHHHHH--HHHHHc
Q 006010          482 LCEDGKLREARMVWTQMLSRGCKPDV-VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF-TYNILL--NALCKQ  557 (664)
Q Consensus       482 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~--~~~~~~  557 (664)
                      +++.+..++|+.-|.++.+.|...-+ -....+.......|+...|...|+++  -.....|-.. -...|=  ..+...
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei--a~dt~~P~~~rd~ARlraa~lLvD~  145 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI--AADTSIPQIGRDLARLRAAYLLVDN  145 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH--hccCCCcchhhHHHHHHHHHHHhcc
Confidence            56778889999999999887643222 22333445567789999999999988  3322223222 111121  235677


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          558 SNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       558 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      |.+++...-.+-+...+     .++....+                +.|+..-.+.|++.+|.+.|.++...
T Consensus       146 gsy~dV~srvepLa~d~-----n~mR~sAr----------------EALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         146 GSYDDVSSRVEPLAGDG-----NPMRHSAR----------------EALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             ccHHHHHHHhhhccCCC-----ChhHHHHH----------------HHHhHHHHhccchHHHHHHHHHHHcc
Confidence            88887777666654322     12222211                23555588999999999999998765

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.85  E-value=2.6  Score=39.37  Aligned_cols=154  Identities=13%  Similarity=0.033  Sum_probs=102.3

Q ss_pred             HHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCH----HHHHHHHHHHHh
Q 006010          164 IIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDI----YTYCTLMDGLCK  239 (664)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~  239 (664)
                      +.-.|++.+|...++++++    ..+-|...++..=.++.-+|+.+.-...++.+...- .+|.    +....+.-++..
T Consensus       113 ~~~~g~~h~a~~~wdklL~----d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLD----DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             hhccccccHHHHHHHHHHH----hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHH
Confidence            3456888888888888887    255577788888888888999888888888876541 2333    233334445567


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHH
Q 006010          240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK---GCLPNEVTYNTLIHGLCLKGNLDKA  316 (664)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~a  316 (664)
                      +|-+++|++.-++..+.+ +-|...-.++...+-.+|++.++.+.+.+-...   +--.-...|-...-.+...+.++.|
T Consensus       188 ~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a  266 (491)
T KOG2610|consen  188 CGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA  266 (491)
T ss_pred             hccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence            899999999888887765 346666777788888889999988887654221   0000111222233344555777777


Q ss_pred             HHHHHHH
Q 006010          317 VSLLDRM  323 (664)
Q Consensus       317 ~~~~~~~  323 (664)
                      +++|+.-
T Consensus       267 leIyD~e  273 (491)
T KOG2610|consen  267 LEIYDRE  273 (491)
T ss_pred             HHHHHHH
Confidence            7777643

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.69  E-value=2.1  Score=35.43  Aligned_cols=124  Identities=17%  Similarity=0.204  Sum_probs=60.7

Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc
Q 006010           88 SLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE  167 (664)
Q Consensus        88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (664)
                      .++..+...+.+..+...++.+...+. .+....+.++..|++.+ .++.++.+..       ..+......+++.|.+.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHHc
Confidence            345555555566666666666665542 45556666666665542 2333333331       11122233455555666


Q ss_pred             CCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhc-CChhHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 006010          168 GLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRL-GLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLC  238 (664)
Q Consensus       168 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  238 (664)
                      +.++++.-++.++..            +...+..+... ++++.|.+.+.+-.      +...|..++..+.
T Consensus        83 ~l~~~~~~l~~k~~~------------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l  136 (140)
T smart00299       83 KLYEEAVELYKKDGN------------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALL  136 (140)
T ss_pred             CcHHHHHHHHHhhcC------------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHH
Confidence            666666666655422            22233333333 55666666555421      3445555554443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.51  E-value=4.4  Score=38.34  Aligned_cols=164  Identities=13%  Similarity=0.102  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          404 VYSALIDGLCRVGKPD---EAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIH  480 (664)
Q Consensus       404 ~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  480 (664)
                      ++..++.+|...+..+   +|..+++.+... .+..+.++..-+..+.+.++.+.+.+.+.+|...- ......+..++.
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~  163 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence            4555666666665543   445555555443 23334555555666666777777777777777643 112333443333


Q ss_pred             HH---HcCCChHHHHHHHHHHHhCCCCcCHHhHH--HHHH-HH--HHcC------CHHHHHHHHHHhhhcCCCCCCCHhH
Q 006010          481 GL---CEDGKLREARMVWTQMLSRGCKPDVVAYS--SMIH-GL--CNAG------SVEEALKLFNEMLCLEPKSQPDVFT  546 (664)
Q Consensus       481 ~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~-~~--~~~g------~~~~A~~~~~~~~~~~~~~~~~~~~  546 (664)
                      .+   .. .....|...+..++...+.|....|.  .++. .+  .+.+      .++....+++.+. ...+.+.+..+
T Consensus       164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~-~~~~~~ls~~~  241 (278)
T PF08631_consen  164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVE-HSLGKQLSAEA  241 (278)
T ss_pred             HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHH-HHhcCCCCHHH
Confidence            33   22 23445666666665544454443111  1111 11  1111      1444444555331 11222223322


Q ss_pred             HH---HHH----HHHHHcCChhHHHHHHHHHH
Q 006010          547 YN---ILL----NALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       547 ~~---~l~----~~~~~~g~~~~A~~~~~~~~  571 (664)
                      -.   +++    ..+.+.++|++|.++|+-..
T Consensus       242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            22   222    34567899999999998654

It is also involved in sporulation [].

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.50  E-value=1.9  Score=37.57  Aligned_cols=29  Identities=21%  Similarity=0.122  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          263 VTFNVLINGLCKNGELGRAAKLVDNMFLK  291 (664)
Q Consensus       263 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~  291 (664)
                      .||--|...+...|+.++|..+|+-....
T Consensus       238 EtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         238 ETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            35555666666666666666666665544

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.45  E-value=2.4  Score=35.07  Aligned_cols=125  Identities=15%  Similarity=0.118  Sum_probs=65.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 006010          406 SALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED  485 (664)
Q Consensus       406 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  485 (664)
                      ..++..+...+.+.....+++.+...+ +.+....+.++..|++.+ ..+..+.++.      ..+......++..|.+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence            345555555666677777777766665 355666666777666542 2333333331      12223334455666666


Q ss_pred             CChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc-CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHH
Q 006010          486 GKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA-GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC  555 (664)
Q Consensus       486 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  555 (664)
                      +.++++.-++.++-.         +...+..+... ++++.|.+++.+.     +   +...|..++..+.
T Consensus        83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~-----~---~~~lw~~~~~~~l  136 (140)
T smart00299       83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ-----N---NPELWAEVLKALL  136 (140)
T ss_pred             CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC-----C---CHHHHHHHHHHHH
Confidence            666666666655421         11122222223 6677777766543     1   4456666665544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.20  E-value=6.7  Score=39.20  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010          369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCK-PNTVVYSALIDGLCRVGKPDEAEEILFEMIN  430 (664)
Q Consensus       369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  430 (664)
                      +-..+..++-+.|+.++|++.+++|.+.... ........|+.++...+.+.++..++.+.-+
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            3344555566677777777777777654221 2333555677777777777777777766544

The molecular function of this protein is uncertain.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.17  E-value=2.3  Score=33.79  Aligned_cols=140  Identities=17%  Similarity=0.154  Sum_probs=73.5

Q ss_pred             HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006010          129 GKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLV  208 (664)
Q Consensus       129 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  208 (664)
                      .-.|..++..++..+...    +.+..-+|.++--....-+-+-..+.++.+-+.      -|..          ..|+.
T Consensus        13 ildG~V~qGveii~k~v~----Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGki------FDis----------~C~Nl   72 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVN----SSNIKEYNWVICNIIDAADCDYVVETLDSIGKI------FDIS----------KCGNL   72 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHH----HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG------S-GG----------G-S-T
T ss_pred             HHhchHHHHHHHHHHHcC----cCCccccceeeeecchhhchhHHHHHHHHHhhh------cCch----------hhcch
Confidence            345777777887777754    234445555555555554545555555554320      1111          22333


Q ss_pred             hHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          209 DNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       209 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      ......+-.+-.     +.......+..+...|+-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.
T Consensus        73 KrVi~C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~A  146 (161)
T PF09205_consen   73 KRVIECYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEA  146 (161)
T ss_dssp             HHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            444333332221     2344555666777777777777777776642 2566777777777888888888888888877


Q ss_pred             HHcCCC
Q 006010          289 FLKGCL  294 (664)
Q Consensus       289 ~~~g~~  294 (664)
                      -+.|++
T Consensus       147 CekG~k  152 (161)
T PF09205_consen  147 CEKGLK  152 (161)
T ss_dssp             HHTT-H
T ss_pred             HHhchH
Confidence            777753

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.07  E-value=12  Score=41.65  Aligned_cols=134  Identities=25%  Similarity=0.312  Sum_probs=79.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010          372 TLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVV----YSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGF  447 (664)
Q Consensus       372 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  447 (664)
                      ..++.--+.|.+.+|+.++        .|+...    |.+..+.+...+.+++|.-.|+..-+.         .-.+.+|
T Consensus       913 e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~  975 (1265)
T KOG1920|consen  913 ECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAY  975 (1265)
T ss_pred             HHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHH
Confidence            3334444555566665554        344443    444445555667777777666654322         2345677


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010          448 FESGKGHKAVEIWKDMAKNNCVYNEVC--YSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE  525 (664)
Q Consensus       448 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  525 (664)
                      ..+|++++|+.+..++..   ..+...  -..|+.-+...+++-+|-++..+...   .|.     -.+..+++...+++
T Consensus       976 ~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen  976 KECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEWEE 1044 (1265)
T ss_pred             HHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHHHH
Confidence            778888888887776643   222222  25677777888888888888777664   222     22344566666777


Q ss_pred             HHHHHHHh
Q 006010          526 ALKLFNEM  533 (664)
Q Consensus       526 A~~~~~~~  533 (664)
                      |.++....
T Consensus      1045 Alrva~~~ 1052 (1265)
T KOG1920|consen 1045 ALRVASKA 1052 (1265)
T ss_pred             HHHHHHhc
Confidence            77766554

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.87  E-value=4.5  Score=38.42  Aligned_cols=128  Identities=10%  Similarity=0.194  Sum_probs=56.5

Q ss_pred             HHHHHHHhhhcCCCCCCHHHHHHHHHHHHH--cC----CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCC---
Q 006010          137 AIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ--EG----LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGL---  207 (664)
Q Consensus       137 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---  207 (664)
                      .+.+++.+ ...|...+..++.+.......  ..    ...+|..+|+.|.+..+.--.++...+..++..  ..++   
T Consensus        81 ~~~~y~~L-~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~  157 (297)
T PF13170_consen   81 VLDIYEKL-KEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE  157 (297)
T ss_pred             HHHHHHHH-HHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence            34455555 344455554444332222221  11    244577777777765443334455555555433  2222   


Q ss_pred             -hhHHHHHHhhcccCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHHHHH
Q 006010          208 -VDNAIQLFREMPVRNCEPDIY--TYCTLMDGLCKENR--LDEAVLLLDEMQVDGCFPTPVTFNV  267 (664)
Q Consensus       208 -~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~  267 (664)
                       .+.+..+|+.+...|+..+-.  ....++........  ..++.++++.+.+.|+++....|..
T Consensus       158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~  222 (297)
T PF13170_consen  158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT  222 (297)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence             234455555555544443221  22222222211111  2345555666666655555444443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.61  E-value=0.73  Score=41.71  Aligned_cols=104  Identities=13%  Similarity=0.154  Sum_probs=53.9

Q ss_pred             CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 006010          225 PDIYTYCTLMDGLCK-----ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVT  299 (664)
Q Consensus       225 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~  299 (664)
                      .|-.+|.+.+..+..     .+..+-....++.|.+.|+..|..+|+.|++.+-+..-                .|. ..
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nv  127 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NV  127 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HH
Confidence            355556555555543     23444455566777777777777788777766543211                111 11


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 006010          300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGR  347 (664)
Q Consensus       300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  347 (664)
                      +....-.|-+  +-+=+++++++|...|+.||..+-..+++++.+.+-
T Consensus       128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            1111111111  112355566666666666666666666666655443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.28  E-value=5.8  Score=35.47  Aligned_cols=211  Identities=13%  Similarity=0.118  Sum_probs=110.4

Q ss_pred             CCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHH
Q 006010           79 YQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFN  158 (664)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  158 (664)
                      +.--...|..-..+|....+|+.|...+..+.+.. +-+. .+.....      -++.|.-+.+++.+   .+.-+..++
T Consensus        27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~y-Ennr-slfhAAK------ayEqaamLake~~k---lsEvvdl~e   95 (308)
T KOG1585|consen   27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNR-SLFHAAK------AYEQAAMLAKELSK---LSEVVDLYE   95 (308)
T ss_pred             chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-Hhcc-cHHHHHH------HHHHHHHHHHHHHH---hHHHHHHHH
Confidence            33345567777778888888888888777666321 1111 2222222      24555555555532   233345666


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC---C--CCCCHHHHHHH
Q 006010          159 SVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR---N--CEPDIYTYCTL  233 (664)
Q Consensus       159 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l  233 (664)
                      .-...|..+|..+.|-..+++.-+.                   .+..+++.|+++|++....   +  ...-...+...
T Consensus        96 KAs~lY~E~GspdtAAmaleKAak~-------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~  156 (308)
T KOG1585|consen   96 KASELYVECGSPDTAAMALEKAAKA-------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC  156 (308)
T ss_pred             HHHHHHHHhCCcchHHHHHHHHHHH-------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            7777788888888777777766441                   1223333444444332210   0  00112234444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCCHHHHHHHHH
Q 006010          234 MDGLCKENRLDEAVLLLDEMQVD----GCFPTP-VTFNVLINGLCKNGELGRAAKLVDNMFLKGC---LPNEVTYNTLIH  305 (664)
Q Consensus       234 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~---~p~~~~~~~l~~  305 (664)
                      .+++.+..++++|-..+.+-...    .--++. ..|-..|-.+.-..|+..|.+.++.--+.+-   .-+..+...|+.
T Consensus       157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~  236 (308)
T KOG1585|consen  157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT  236 (308)
T ss_pred             hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence            55666666666665544432211    001121 2344555556666788888888877443321   123455666666


Q ss_pred             HHHhcCChHHHHHHH
Q 006010          306 GLCLKGNLDKAVSLL  320 (664)
Q Consensus       306 ~~~~~g~~~~a~~~~  320 (664)
                      +| ..|+.+++.+++
T Consensus       237 ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  237 AY-DEGDIEEIKKVL  250 (308)
T ss_pred             Hh-ccCCHHHHHHHH
Confidence            65 456666655543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.21  E-value=0.58  Score=42.33  Aligned_cols=69  Identities=20%  Similarity=0.307  Sum_probs=34.1

Q ss_pred             hhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC----------------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006010          208 VDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN----------------RLDEAVLLLDEMQVDGCFPTPVTFNVLING  271 (664)
Q Consensus       208 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  271 (664)
                      ++-....++.|.+.|+..|..+|+.|++.+=+..                +-+=+++++++|...|+.||..+-..|+++
T Consensus        88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~  167 (406)
T KOG3941|consen   88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA  167 (406)
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence            3333344555666666666666666665543321                112244455555555555555555555555


Q ss_pred             HHhcC
Q 006010          272 LCKNG  276 (664)
Q Consensus       272 ~~~~g  276 (664)
                      +.+.+
T Consensus       168 FGr~~  172 (406)
T KOG3941|consen  168 FGRWN  172 (406)
T ss_pred             hcccc
Confidence            44433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.11  E-value=0.12  Score=30.65  Aligned_cols=25  Identities=12%  Similarity=0.008  Sum_probs=17.1

Q ss_pred             HHHHHHHhcccchHHHHHHHHHhhh
Q 006010          638 WERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       638 ~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      |..|+..|.+.|++++|+++|++.|
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5667777777777777777777743

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=93.09  E-value=13  Score=39.91  Aligned_cols=42  Identities=14%  Similarity=0.135  Sum_probs=23.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006010          233 LMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN  275 (664)
Q Consensus       233 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  275 (664)
                      ++-.|.++|++++|.++..+.... .......+-..+..|...
T Consensus       117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence            344566778888887777444332 233445556666666654

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.02  E-value=1.2  Score=41.27  Aligned_cols=77  Identities=18%  Similarity=0.291  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD-----RGCDPDLVTCN  583 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~  583 (664)
                      ++..++..+...|+++.+...+++.+..++-   +...|..++.+|.+.|+...|+..|+++.+     .|+.|......
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~---~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPY---DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            5666777777788888888888887655544   667788888888888888888888877764     47777777665


Q ss_pred             HHHHh
Q 006010          584 IFLTA  588 (664)
Q Consensus       584 ~ll~~  588 (664)
                      .....
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            55555

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=93.02  E-value=11  Score=37.76  Aligned_cols=91  Identities=12%  Similarity=0.118  Sum_probs=65.8

Q ss_pred             HHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHhh
Q 006010           67 DEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHL-VEEAIRLFHTMV  145 (664)
Q Consensus        67 ~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~  145 (664)
                      ..+|+.+..  .|+.++..|...+..+-+.+.+.+...+|..|+...+ .++..|..-+.....-+. ++.|..+|.+.+
T Consensus        91 v~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp-~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   91 VFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP-NNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            345555543  3567889999999999999999999999999998764 366777776666555444 899999999887


Q ss_pred             hcCCCCCCHHHHHHHHH
Q 006010          146 DEFHCKRTVKSFNSVLN  162 (664)
Q Consensus       146 ~~~~~~~~~~~~~~l~~  162 (664)
                      +.  ++.++..|-...+
T Consensus       168 R~--npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  168 RF--NPDSPKLWKEYFR  182 (568)
T ss_pred             hc--CCCChHHHHHHHH
Confidence            65  3444555554444

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=92.97  E-value=3.9  Score=32.60  Aligned_cols=140  Identities=16%  Similarity=0.214  Sum_probs=78.4

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 006010          413 CRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREAR  492 (664)
Q Consensus       413 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  492 (664)
                      .-.|..++..++..+....   .+..-++.++.-....-+-+-..+.++.+-+.   .|.          ...|+.....
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi   76 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI   76 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence            4467778888888777764   24555555555444444444455555544331   222          1233333333


Q ss_pred             HHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          493 MVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       493 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      ..+-.+     ..+.......+..+...|+-++-.+++.++.  . ...+++...-.+..+|.+.|+..++-++++++-+
T Consensus        77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~--k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELK--K-NEEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHh--h-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            333221     1233445556677788888888888888873  2 3556777888888999999999999999999988


Q ss_pred             CCCC
Q 006010          573 RGCD  576 (664)
Q Consensus       573 ~~~~  576 (664)
                      .|++
T Consensus       149 kG~k  152 (161)
T PF09205_consen  149 KGLK  152 (161)
T ss_dssp             TT-H
T ss_pred             hchH
Confidence            7764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=92.79  E-value=2.1  Score=38.01  Aligned_cols=62  Identities=19%  Similarity=0.306  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCCH-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          521 GSVEEALKLFNEMLCLEPKSQPDV-FTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       521 g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      ..++.|+..|.+++.    ..|+. ..|+.-+.++.+..+++.+..--.+.++  +.||.+.-..+++.
T Consensus        24 k~y~~ai~~y~raI~----~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~   86 (284)
T KOG4642|consen   24 KRYDDAIDCYSRAIC----INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQ   86 (284)
T ss_pred             hhhchHHHHHHHHHh----cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHH
Confidence            344455555544443    22222 2333444444455555555554444444  45555444444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.73  E-value=1.3  Score=38.42  Aligned_cols=103  Identities=13%  Similarity=0.080  Sum_probs=60.1

Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010          508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD--VFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF  585 (664)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  585 (664)
                      ..+..++..|++.|+.++|.+.|.++  .+....+.  ...+-.+++.....|++..+...+.++...-..+.......-
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~--~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRA--RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHH--hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            45667777788888888888888877  33332222  334556667777778888877777776643222222222222


Q ss_pred             HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010          586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ  628 (664)
Q Consensus       586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  628 (664)
                      +..+                -|..+...|++.+|-+.|-....
T Consensus       115 lk~~----------------~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  115 LKVY----------------EGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHH----------------HHHHHHHhchHHHHHHHHHccCc
Confidence            2221                11225667788888777766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.64  E-value=20  Score=40.02  Aligned_cols=110  Identities=16%  Similarity=0.188  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHH
Q 006010          369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAF--TYSSLMKG  446 (664)
Q Consensus       369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~  446 (664)
                      .|.+...-+.+...+++|.-.|+..-+.         .-.+.+|...|+|.+|..+..++...   .+..  +-..|+.-
T Consensus       941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen  941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence            3344444455667777777777654321         23466777788888888877766432   1222  22456666


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 006010          447 FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQM  498 (664)
Q Consensus       447 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  498 (664)
                      +...++.-+|-++.......        ....+..|++...+++|..+-...
T Consensus      1009 L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence            67777777777776665431        122344556666667766655443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.63  E-value=2.6  Score=35.82  Aligned_cols=62  Identities=21%  Similarity=0.247  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010          523 VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS-----------NISHSIDLLNSMMDRGCDPDLVTCNIFLTAL  589 (664)
Q Consensus       523 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~  589 (664)
                      +++|+.=|++++.++|.   ...++..+..+|...+           .+++|.+.|+++.+  ..|+...|+.-+..+
T Consensus        51 iedAisK~eeAL~I~P~---~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   51 IEDAISKFEEALKINPN---KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence            34455555555544443   3344555555554322           25566677777776  688888888877764

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=92.53  E-value=0.15  Score=29.81  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=13.2

Q ss_pred             CHhHHHHHHHHHHHcCChhHHH
Q 006010          543 DVFTYNILLNALCKQSNISHSI  564 (664)
Q Consensus       543 ~~~~~~~l~~~~~~~g~~~~A~  564 (664)
                      |...|+.+...|...|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            5556666666666666666554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.52  E-value=1.9  Score=37.34  Aligned_cols=101  Identities=14%  Similarity=0.036  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHH
Q 006010          118 EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKR--TVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTF  195 (664)
Q Consensus       118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  195 (664)
                      ...+..++..|.+.|+.++|++.|.++.+. ...+  -...+..+++.....+++..+.....++......+-.++...-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            346778899999999999999999998543 2122  2456788888888999999988888887653222211111111


Q ss_pred             HHHHH--HHHhcCChhHHHHHHhhcc
Q 006010          196 NLVIK--TVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       196 ~~ll~--~~~~~g~~~~A~~~~~~~~  219 (664)
                      -.+..  .+...+++..|-+.|-+..
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccC
Confidence            11111  2234678888887776664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.08  E-value=0.37  Score=28.55  Aligned_cols=26  Identities=27%  Similarity=0.618  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006010          156 SFNSVLNVIIQEGLYHRALEFYNHIV  181 (664)
Q Consensus       156 ~~~~l~~~~~~~~~~~~A~~~~~~~~  181 (664)
                      +|+.|...|.+.|++++|+++|++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35667777777777777777777744

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.90  E-value=9.5  Score=34.59  Aligned_cols=199  Identities=22%  Similarity=0.134  Sum_probs=102.7

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 006010          333 VTYGTIINGLVKLGRAVDGARVLMSMEER-KFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALID-  410 (664)
Q Consensus       333 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-  410 (664)
                      ..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ ......... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence            44444555555556666555555554431 122234444455555555556666666666665543222 111122222 


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCC
Q 006010          411 GLCRVGKPDEAEEILFEMINNGC--AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVY-NEVCYSVLIHGLCEDGK  487 (664)
Q Consensus       411 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~  487 (664)
                      .+...|+++.+...+........  ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence            55666667777776666644211  0122333333333555666666666666666543 22 34555556666666666


Q ss_pred             hHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010          488 LREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLC  535 (664)
Q Consensus       488 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (664)
                      +++|...+......  .|+ ...+..+...+...+..+++...+.+.+.
T Consensus       218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            67777766666653  232 33333444444455566777766666643

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.85  E-value=0.51  Score=27.38  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010          510 YSSMIHGLCNAGSVEEALKLFNEML  534 (664)
Q Consensus       510 ~~~l~~~~~~~g~~~~A~~~~~~~~  534 (664)
                      |..++.+|...|++++|+..|++++
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al   28 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRAL   28 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHH
Confidence            4444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.69  E-value=0.44  Score=27.64  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006010          545 FTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD  578 (664)
Q Consensus       545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  578 (664)
                      ..|..+..+|...|++++|+..++++++  +.|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence            4688899999999999999999999998  5665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.65  E-value=1.9  Score=37.38  Aligned_cols=76  Identities=13%  Similarity=0.003  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC-CCCHhHHHHHHHHHHHcCChhHHH
Q 006010          488 LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS-QPDVFTYNILLNALCKQSNISHSI  564 (664)
Q Consensus       488 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~  564 (664)
                      -++|.+.|-.+...+.--++.....++..|. ..+.+++..++.++++..... .+|+..+..|+..+.+.|+++.|-
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3567777777776665445555555555554 678888888888887766555 788888888888888888888774

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.63  E-value=2.2  Score=39.61  Aligned_cols=71  Identities=17%  Similarity=0.311  Sum_probs=35.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh-----CCCCcCHHhHH
Q 006010          440 YSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLS-----RGCKPDVVAYS  511 (664)
Q Consensus       440 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~  511 (664)
                      +..++..+...|+.+.+.+.++++.... +.+...|..++.+|...|+...|+..|+.+.+     .|+.|...+..
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3444444555555555555555555444 34445555555555555555555555554433     34555544443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.27  E-value=9.7  Score=33.44  Aligned_cols=183  Identities=16%  Similarity=0.109  Sum_probs=102.3

Q ss_pred             HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHHHHhcC
Q 006010          128 YGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKTVCRLG  206 (664)
Q Consensus       128 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g  206 (664)
                      |-..|-+.-|+.-|.+.+.-  .|.-+..||.+.--+...|+++.|.+.|+...+     ..|. ..+...-.-++.--|
T Consensus        75 YDSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E-----LDp~y~Ya~lNRgi~~YY~g  147 (297)
T COG4785          75 YDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-----LDPTYNYAHLNRGIALYYGG  147 (297)
T ss_pred             hhhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc-----cCCcchHHHhccceeeeecC
Confidence            33445555566666655443  233456788888888888888888888888877     3332 222222222333468


Q ss_pred             ChhHHHHHHhhcccCCCCCCHH--HHHHHHHHHHhcCChhHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010          207 LVDNAIQLFREMPVRNCEPDIY--TYCTLMDGLCKENRLDEAVLLL-DEMQVDGCFPTPVTFNVLINGLCKNGELGRAAK  283 (664)
Q Consensus       207 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  283 (664)
                      ++.-|.+-|...-+.+ +.|+.  .|.-+.   -..-++.+|..-+ ++...    .|..-|...|-.|.- |++. ...
T Consensus       148 R~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~  217 (297)
T COG4785         148 RYKLAQDDLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EET  217 (297)
T ss_pred             chHhhHHHHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHH
Confidence            8888877766655543 33332  222222   2334556665433 33333    355555544433322 2211 112


Q ss_pred             HHHHHHHcCC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010          284 LVDNMFLKGC------LPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASK  327 (664)
Q Consensus       284 ~~~~~~~~g~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  327 (664)
                      +++++....-      ..=..||--+...+...|+.++|..+|+-.....
T Consensus       218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            2333222110      0124688899999999999999999999888763

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.67  E-value=20  Score=36.02  Aligned_cols=184  Identities=10%  Similarity=0.112  Sum_probs=114.1

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHH
Q 006010          434 AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSM  513 (664)
Q Consensus       434 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  513 (664)
                      +.|.....+++..+.......-...+..+|..-|  .+-..|..++.+|... ..++-..+|+++.+..+. |.+.-..|
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL  138 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL  138 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence            4566677788888888888888888888888866  6777888899999888 667888899988886432 33333444


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhcCCCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHhh
Q 006010          514 IHGLCNAGSVEEALKLFNEMLCLEPKSQPD---VFTYNILLNALCKQSNISHSIDLLNSMMDR-GCDPDLVTCNIFLTAL  589 (664)
Q Consensus       514 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~  589 (664)
                      +..|.+ ++.+.+..+|.+++-.--..+-+   ...|..+...  -..+.+....+.+++... |..--.+.+..+... 
T Consensus       139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~-  214 (711)
T COG1747         139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK-  214 (711)
T ss_pred             HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH-
Confidence            444544 88888888888874211000001   1134443321  123455555555555532 222222333333333 


Q ss_pred             hhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 006010          590 KEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELC  646 (664)
Q Consensus       590 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  646 (664)
                                          |....+|++|++++..+.+. -..|...-..++..+.
T Consensus       215 --------------------Ys~~eN~~eai~Ilk~il~~-d~k~~~ar~~~i~~lR  250 (711)
T COG1747         215 --------------------YSENENWTEAIRILKHILEH-DEKDVWARKEIIENLR  250 (711)
T ss_pred             --------------------hccccCHHHHHHHHHHHhhh-cchhhhHHHHHHHHHH
Confidence                                88899999999999988875 2335444455555443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.61  E-value=0.79  Score=26.46  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010          510 YSSMIHGLCNAGSVEEALKLFNEML  534 (664)
Q Consensus       510 ~~~l~~~~~~~g~~~~A~~~~~~~~  534 (664)
                      |..+...+...|++++|++.|++++
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3344444444445555555444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.34  E-value=27  Score=36.96  Aligned_cols=178  Identities=12%  Similarity=0.022  Sum_probs=97.0

Q ss_pred             hhHHHHHHhhcccCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 006010          208 VDNAIQLFREMPVRNCEPDIYTYCTLMDG-----LCKENRLDEAVLLLDEMQV-------DGCFPTPVTFNVLINGLCKN  275 (664)
Q Consensus       208 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~  275 (664)
                      ...|.++++...+.|   +......+..+     +....+.+.|+..|+.+..       .|   .+.....+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            457888888887776   33333333322     3356788888888888766       44   233455566666653


Q ss_pred             C-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c
Q 006010          276 G-----ELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL-KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVK----L  345 (664)
Q Consensus       276 g-----~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~  345 (664)
                      .     +.+.|..++.+....|. |+.......+..... ..+...|.++|...-..|   ....+..+..+|..    .
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~  377 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE  377 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence            3     55668888877776653 243332222222221 245677888888887776   22233333333322    2


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006010          346 GRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKG  397 (664)
Q Consensus       346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  397 (664)
                      .+...|..++.+..+.|.. ....-...+..+.. +.++.+.-.+..+.+.|
T Consensus       378 r~~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             CCHHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            3566777777777776622 22222222222333 55666655555555544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.33  E-value=0.65  Score=26.83  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=26.3

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006010          545 FTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD  578 (664)
Q Consensus       545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  578 (664)
                      ..|..+...+...|++++|++.+++.++  +.|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence            3577888999999999999999999997  5554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.98  E-value=29  Score=36.75  Aligned_cols=48  Identities=10%  Similarity=0.102  Sum_probs=24.0

Q ss_pred             CHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc----CChhHHHHHHHHHHHCC
Q 006010          522 SVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ----SNISHSIDLLNSMMDRG  574 (664)
Q Consensus       522 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~  574 (664)
                      +.+.+...+.+.  ...+   +......+.+.|..-    .+++.|...+......+
T Consensus       454 ~~~~~~~~~~~a--~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~  505 (552)
T KOG1550|consen  454 TLERAFSLYSRA--AAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG  505 (552)
T ss_pred             chhHHHHHHHHH--Hhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence            345555555555  2233   444444444444322    24666777666666543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.57  E-value=12  Score=31.78  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=14.1

Q ss_pred             hcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006010          217 EMPVRNCEPDIYTYCTLMDGLCKENRLD  244 (664)
Q Consensus       217 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~  244 (664)
                      .+.+.+++|+...+..+++.+.+.|++.
T Consensus        19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~   46 (167)
T PF07035_consen   19 SLNQHNIPVQHELYELLIDLLIRNGQFS   46 (167)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence            3334444555555555555555555443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.55  E-value=12  Score=31.77  Aligned_cols=28  Identities=18%  Similarity=0.185  Sum_probs=13.7

Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006010          287 NMFLKGCLPNEVTYNTLIHGLCLKGNLD  314 (664)
Q Consensus       287 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~  314 (664)
                      .+...++.|+...+..++..+.+.|++.
T Consensus        19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~   46 (167)
T PF07035_consen   19 SLNQHNIPVQHELYELLIDLLIRNGQFS   46 (167)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence            3334445555555555555555555433

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.50  E-value=4.5  Score=41.12  Aligned_cols=44  Identities=30%  Similarity=0.221  Sum_probs=21.4

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          239 KENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       239 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      +.|+++.|.++..+..      +..-|..|.++..+.+++..|.+.|...
T Consensus       649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a  692 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA  692 (794)
T ss_pred             hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence            4455555544443322      3344555555555555555555555443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=89.47  E-value=34  Score=36.84  Aligned_cols=184  Identities=11%  Similarity=0.147  Sum_probs=94.7

Q ss_pred             HHHHHHHhhhcCCCCCC--HHHHHHHHHHHH-HcCCHhHHHHHHHHHHhcccCCCCcCHH-----HHHHHHHHHHhcCCh
Q 006010          137 AIRLFHTMVDEFHCKRT--VKSFNSVLNVII-QEGLYHRALEFYNHIVNAKHMNILPNTL-----TFNLVIKTVCRLGLV  208 (664)
Q Consensus       137 A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~g~~  208 (664)
                      |++-++.+.+....+|.  +.++.-++..+. ...+++.|...+++.......   ++..     ....++..+.+.+..
T Consensus        40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHH
Confidence            55555555444444443  335556666666 556788888888776442111   2211     223445555555544


Q ss_pred             hHHHHHHhhcccC----CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCCh
Q 006010          209 DNAIQLFREMPVR----NCEPDIYTYCTL-MDGLCKENRLDEAVLLLDEMQVDG---CFPTPVTFNVLINGLC--KNGEL  278 (664)
Q Consensus       209 ~~A~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~  278 (664)
                      . |...+++..+.    +..+-...|..+ +..+...++...|.+.++.+...-   ..|-..++-.++.+..  ..+..
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~  195 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP  195 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            4 77777665432    111223333333 333333468888888877765432   2333444444444433  34555


Q ss_pred             hHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHH
Q 006010          279 GRAAKLVDNMFLKG---------CLPNEVTYNTLIHGLC--LKGNLDKAVSLLDRMV  324 (664)
Q Consensus       279 ~~a~~~~~~~~~~g---------~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~  324 (664)
                      +++.+.++++....         ..|-..+|..++..++  ..|+++.+.+.++++.
T Consensus       196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            66666666653321         1234456666665443  4667666666665554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.44  E-value=0.62  Score=27.16  Aligned_cols=24  Identities=21%  Similarity=0.549  Sum_probs=12.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHhHHH
Q 006010          151 KRTVKSFNSVLNVIIQEGLYHRAL  174 (664)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~A~  174 (664)
                      |.++.+|+.+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            344555555555555555555543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.40  E-value=0.046  Score=45.73  Aligned_cols=83  Identities=10%  Similarity=0.095  Sum_probs=43.7

Q ss_pred             HHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010          479 IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS  558 (664)
Q Consensus       479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  558 (664)
                      +..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++..         +..-...++..|.+.|
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---------~~yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---------NNYDLDKALRLCEKHG   84 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---------SSS-CTHHHHHHHTTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---------cccCHHHHHHHHHhcc
Confidence            4445555666666666666665443444555666666666665555555555422         1112234455555666


Q ss_pred             ChhHHHHHHHHH
Q 006010          559 NISHSIDLLNSM  570 (664)
Q Consensus       559 ~~~~A~~~~~~~  570 (664)
                      .+++|.-++.++
T Consensus        85 l~~~a~~Ly~~~   96 (143)
T PF00637_consen   85 LYEEAVYLYSKL   96 (143)
T ss_dssp             SHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHc
Confidence            666666655554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.40  E-value=4  Score=35.19  Aligned_cols=93  Identities=18%  Similarity=0.148  Sum_probs=61.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHH-----HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          512 SMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILL-----NALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFL  586 (664)
Q Consensus       512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll  586 (664)
                      .=.+-+.+.|++++|..-|..++..-+.   ...-...++     .++.+.+.++.|+.-..+.++  +.|...-  .+.
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~---~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~k--Al~  172 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPS---TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEK--ALE  172 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCcc---ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHH--HHH
Confidence            3466678889999999999999643222   111222222     245678889999888888887  5553221  122


Q ss_pred             HhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          587 TALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      +                  -+.+|.+...+++|++-|+++++.
T Consensus       173 R------------------RAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  173 R------------------RAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             H------------------HHHHHHhhhhHHHHHHHHHHHHHh
Confidence            2                  122388899999999999999874

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.80  E-value=18  Score=32.88  Aligned_cols=173  Identities=13%  Similarity=0.104  Sum_probs=90.2

Q ss_pred             CCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 006010          362 KFHVNEYIYSTLISG-LFKEGKAEDAMKLWKQMMEKGCKPN---TVVYSALIDGLCRVGKPDEAEEILFEMINN-----G  432 (664)
Q Consensus       362 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~  432 (664)
                      +..||+..-|..-.+ -.+...+++|+.-|++..+......   ..++..++....+.+++++..+.+.+++.-     .
T Consensus        21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT  100 (440)
T KOG1464|consen   21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT  100 (440)
T ss_pred             CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence            345555544433222 1234467888888888776532222   334455667777888888888877776531     0


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc--
Q 006010          433 CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN-CVYNE----VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP--  505 (664)
Q Consensus       433 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--  505 (664)
                      -..+..+.+.+++....+.+.+-..++++.-.+.- -..+.    .+-..+...|...|.+.+..++++++....-..  
T Consensus       101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG  180 (440)
T KOG1464|consen  101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG  180 (440)
T ss_pred             ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence            12344556666666666666655555555433210 00111    122345556666666666666666665442111  


Q ss_pred             --C-------HHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010          506 --D-------VVAYSSMIHGLCNAGSVEEALKLFNEML  534 (664)
Q Consensus       506 --~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (664)
                        |       ...|..-+..|....+-..-..+|++.+
T Consensus       181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal  218 (440)
T KOG1464|consen  181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL  218 (440)
T ss_pred             chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence              1       1233334444555555555555555554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.66  E-value=15  Score=31.79  Aligned_cols=129  Identities=12%  Similarity=0.106  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhH----
Q 006010          437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYS--VLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY----  510 (664)
Q Consensus       437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----  510 (664)
                      ...|..++.... .+.. +.....+.+...........+.  .+...+...|++++|...++..+..   |....+    
T Consensus        54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~  128 (207)
T COG2976          54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA  128 (207)
T ss_pred             HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence            344555555443 2333 4444444454432111111222  2345667788888888888777653   222222    


Q ss_pred             -HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010          511 -SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG  574 (664)
Q Consensus       511 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  574 (664)
                       ..|.......|.+|+|...++..  .+++.  .......-.+.+...|+-++|..-|++.++.+
T Consensus       129 ~lRLArvq~q~~k~D~AL~~L~t~--~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         129 ALRLARVQLQQKKADAALKTLDTI--KEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcc--ccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence             33455667778888888888766  22221  11123334467778888888888888887653

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=88.64  E-value=4.6  Score=34.38  Aligned_cols=109  Identities=14%  Similarity=0.145  Sum_probs=58.8

Q ss_pred             cchHHHHHHHHHhCCCCcCHHHHHHHHHHHHh---c-------CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010           99 FKSLEMVLYRMRREKRVVLEKSFIFIFKAYGK---A-------HLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG  168 (664)
Q Consensus        99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~-------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (664)
                      |+.|++.++.....++. +...++.-..++..   .       ..+++|+.-|+..+..  .|....++..+..++...+
T Consensus         7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence            44555555555544533 44444433333222   2       3456666666666553  2333467777777776543


Q ss_pred             -----------CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC
Q 006010          169 -----------LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR  221 (664)
Q Consensus       169 -----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~  221 (664)
                                 .|++|...|++...     ..|+...|+.-+....      +|-+++.++.+.
T Consensus        84 ~l~~d~~~A~~~F~kA~~~FqkAv~-----~~P~ne~Y~ksLe~~~------kap~lh~e~~~~  136 (186)
T PF06552_consen   84 FLTPDTAEAEEYFEKATEYFQKAVD-----EDPNNELYRKSLEMAA------KAPELHMEIHKQ  136 (186)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHH-----H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred             hhcCChHHHHHHHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence                       25667777777766     5688888888777653      355555555444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.36  E-value=40  Score=36.28  Aligned_cols=194  Identities=14%  Similarity=0.022  Sum_probs=92.9

Q ss_pred             HhcCChHHHHHHHHHHHHCCC--CC----CHHHHHHHH--HHHHcCCChHHHHHHHH--------HHHhCCCCcCHHhHH
Q 006010          448 FESGKGHKAVEIWKDMAKNNC--VY----NEVCYSVLI--HGLCEDGKLREARMVWT--------QMLSRGCKPDVVAYS  511 (664)
Q Consensus       448 ~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~~l~--~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~  511 (664)
                      +-.+++..|....+.+.....  ++    ....+..++  -.+-..|+.+.|...|.        .....+...+..++.
T Consensus       372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila  451 (608)
T PF10345_consen  372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA  451 (608)
T ss_pred             HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence            446788888888888776321  11    112222222  23345789999999997        444444444433333


Q ss_pred             H--HHHHHHHcC--CHHH--HHHHHHHhhhcCCCCCC--CHhHHHHHH-HHHHHcC--ChhHHHHHHHHHHHCC--CCCC
Q 006010          512 S--MIHGLCNAG--SVEE--ALKLFNEMLCLEPKSQP--DVFTYNILL-NALCKQS--NISHSIDLLNSMMDRG--CDPD  578 (664)
Q Consensus       512 ~--l~~~~~~~g--~~~~--A~~~~~~~~~~~~~~~~--~~~~~~~l~-~~~~~~g--~~~~A~~~~~~~~~~~--~~p~  578 (664)
                      .  ++..+...+  ..++  +..+++.+-.. ....|  +..++..++ .++....  ...++...+.+..+.-  ...+
T Consensus       452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n  530 (608)
T PF10345_consen  452 ALNLAIILQYESSRDDSESELNELLEQIEPL-CSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN  530 (608)
T ss_pred             HHHHHHHhHhhcccchhhhHHHHHHHhcCcc-ccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence            2  222222222  2333  77777766211 11222  233444443 3332211  2235555554443311  1111


Q ss_pred             HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCC---ChHHHHHH-----HHHhcccch
Q 006010          579 LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSP---QTSTWERV-----VQELCRPKR  650 (664)
Q Consensus       579 ~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l-----~~~~~~~g~  650 (664)
                      ......++                 .-++..+. .|+..+..+.........-+.   ....|..+     .+.+-..|+
T Consensus       531 ~~l~~~~L-----------------~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~  592 (608)
T PF10345_consen  531 SQLLAILL-----------------NLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGD  592 (608)
T ss_pred             chHHHHHH-----------------HHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCc
Confidence            11111111                 12333355 677777666665544331122   44667333     445777899


Q ss_pred             HHHHHHHHHh
Q 006010          651 IQAAINKCWS  660 (664)
Q Consensus       651 ~~~A~~~~~~  660 (664)
                      .++|.....+
T Consensus       593 ~~ka~~~~~~  602 (608)
T PF10345_consen  593 RDKAEEARQQ  602 (608)
T ss_pred             HHHHHHHHHH
Confidence            9999876554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.31  E-value=14  Score=36.84  Aligned_cols=122  Identities=13%  Similarity=0.086  Sum_probs=82.7

Q ss_pred             HHHHHcCCHHHHHHHHHHhh-hcCCCCCCC-----HhHHHHHHHHHHHcCChhHHHHHHHHHHH-------CCCCCCHHH
Q 006010          515 HGLCNAGSVEEALKLFNEML-CLEPKSQPD-----VFTYNILLNALCKQSNISHSIDLLNSMMD-------RGCDPDLVT  581 (664)
Q Consensus       515 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~~~  581 (664)
                      +.+.-.|++..|.+++...- ...++...+     -..||.|...+.+.|.+.-+..+|.++.+       .|++|....
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~  327 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF  327 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence            34556799999999886541 112232222     12357777777888888888888888774       344433210


Q ss_pred             HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 006010          582 CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRP  648 (664)
Q Consensus       582 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  648 (664)
                        ++.         ..+..+.+=..+..|...|+...|.+-|.+.... +..+|..|-.+.++|...
T Consensus       328 --tls---------~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  328 --TLS---------QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             --ehh---------cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence              111         1233444556677799999999999999999886 778999999999998654

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=88.19  E-value=31  Score=34.78  Aligned_cols=60  Identities=8%  Similarity=-0.042  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          299 TYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER  361 (664)
Q Consensus       299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  361 (664)
                      ...+++..+..+..+.-...+..+|+.-|  .+...+..++.+|... ..++-..+++++.+.
T Consensus        68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~  127 (711)
T COG1747          68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY  127 (711)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence            33444444444444444444444444432  2333444444444444 333444444444443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.06  E-value=0.017  Score=48.31  Aligned_cols=128  Identities=16%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             HHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010           89 LIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG  168 (664)
Q Consensus        89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (664)
                      +++.+.+.+.+..+...++.+...+...+....+.++..|++.++.+...++++..       .+ .-...++..|.+.|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~-yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NN-YDLDKALRLCEKHG   84 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SS-S-CTHHHHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cc-cCHHHHHHHHHhcc
Confidence            35556666777777777777776665566777778888888877666666665422       01 22245566666667


Q ss_pred             CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006010          169 LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENR  242 (664)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  242 (664)
                      .+++|.-+|.++-.            +...+..+...++++.|.+.+.+.      ++...|..++..+...++
T Consensus        85 l~~~a~~Ly~~~~~------------~~~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   85 LYEEAVYLYSKLGN------------HDEALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             SHHHHHHHHHCCTT------------HTTCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred             hHHHHHHHHHHccc------------HHHHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence            77666666665422            111111123344555555333332      245667777776665544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=88.04  E-value=25  Score=33.50  Aligned_cols=22  Identities=9%  Similarity=0.234  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHCCCCCChhhHH
Q 006010          315 KAVSLLDRMVASKCMPNEVTYG  336 (664)
Q Consensus       315 ~a~~~~~~~~~~~~~~~~~~~~  336 (664)
                      +...+++.+.+.|+.-+..+|.
T Consensus        80 ~~~~~y~~L~~~gFk~~~y~~l  101 (297)
T PF13170_consen   80 EVLDIYEKLKEAGFKRSEYLYL  101 (297)
T ss_pred             HHHHHHHHHHHhccCccChHHH
Confidence            3445555555555555554443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.03  E-value=41  Score=35.94  Aligned_cols=73  Identities=14%  Similarity=0.079  Sum_probs=35.7

Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcccCCCCc---CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 006010          162 NVIIQEGLYHRALEFYNHIVNAKHMNILP---NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLC  238 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  238 (664)
                      ..+.+.+.+++|+...+....     ..|   -.......+..+.-.|++++|-...-.|...    +..-|...+..+.
T Consensus       364 ~Wll~~k~yeeAl~~~k~~~~-----~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~  434 (846)
T KOG2066|consen  364 DWLLEKKKYEEALDAAKASIG-----NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFA  434 (846)
T ss_pred             HHHHHhhHHHHHHHHHHhccC-----CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhc
Confidence            344555566666655554422     222   1224445555555556666666555555533    3444444444444


Q ss_pred             hcCCh
Q 006010          239 KENRL  243 (664)
Q Consensus       239 ~~g~~  243 (664)
                      ..+..
T Consensus       435 e~~~l  439 (846)
T KOG2066|consen  435 ELDQL  439 (846)
T ss_pred             ccccc
Confidence            44443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.97  E-value=15  Score=30.83  Aligned_cols=57  Identities=16%  Similarity=0.081  Sum_probs=33.2

Q ss_pred             HHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010           89 LIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVD  146 (664)
Q Consensus        89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  146 (664)
                      ++..-.+.++.+.+..++..+.-..+. ....-..-...+...|+|.+|+.+|+.+..
T Consensus        16 ~~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   16 VLSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HHHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            344445666777777777666655543 233333344445667777777777777643

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.91  E-value=7.8  Score=36.09  Aligned_cols=101  Identities=11%  Similarity=0.144  Sum_probs=59.0

Q ss_pred             CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006010          327 KCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERK---FHV--NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN  401 (664)
Q Consensus       327 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  401 (664)
                      |.+....+...++..-....+++.+...+-++....   ..+  +..++-   ..+ -.-+.++++.++..=...|+-||
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~i---rll-lky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWI---RLL-LKYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHH---HHH-HccChHHHHHHHhCcchhccccc
Confidence            334444444444444444556666666665554421   111  222222   222 23356677777777777777788


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006010          402 TVVYSALIDGLCRVGKPDEAEEILFEMINN  431 (664)
Q Consensus       402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  431 (664)
                      ..+++.+|+.+.+.+++.+|..+...|+..
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            888888888888888887777777666554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.85  E-value=15  Score=30.79  Aligned_cols=52  Identities=13%  Similarity=0.014  Sum_probs=22.8

Q ss_pred             HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          129 GKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       129 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      .+.++.+++..+++.+.-..+..+...++  -...++..|++.+|..+++.+..
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~--~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLF--DGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHH--HHHHHHHhCCHHHHHHHHHHHhc
Confidence            34455555555555543321112222222  22333455555555555555533

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.62  E-value=1.2  Score=25.45  Aligned_cols=28  Identities=21%  Similarity=0.359  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010          120 SFIFIFKAYGKAHLVEEAIRLFHTMVDE  147 (664)
Q Consensus       120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  147 (664)
                      ++..++.++.+.|++++|++.|+.+++.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3455666677777777777777777654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=87.59  E-value=2.9  Score=39.14  Aligned_cols=91  Identities=20%  Similarity=0.150  Sum_probs=49.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCH
Q 006010          444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSV  523 (664)
Q Consensus       444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  523 (664)
                      .+.|.++|.+++|+..|....... +.|.+++..-..+|.+...+..|..-....+..+ ..-...|..-+.+-...|..
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence            445666666777776666655543 3356666666666666666666655555544321 11123344444444445556


Q ss_pred             HHHHHHHHHhhhc
Q 006010          524 EEALKLFNEMLCL  536 (664)
Q Consensus       524 ~~A~~~~~~~~~~  536 (664)
                      .+|.+-++.++.+
T Consensus       182 ~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  182 MEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHhHHHHHhh
Confidence            6666666665543

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=87.41  E-value=43  Score=35.61  Aligned_cols=93  Identities=12%  Similarity=0.004  Sum_probs=34.7

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006010          333 VTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGL  412 (664)
Q Consensus       333 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  412 (664)
                      ..|..-+..+...++..  ...++.+..+-+-.+......++..|.+.|-.+.+..+.+.+-.+-.  ...-|..-+..+
T Consensus       373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~  448 (566)
T PF07575_consen  373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF  448 (566)
T ss_dssp             TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence            34444444443333222  44455555443334555556666667777766666666665544311  122333444445


Q ss_pred             HhcCChhHHHHHHHHHH
Q 006010          413 CRVGKPDEAEEILFEMI  429 (664)
Q Consensus       413 ~~~~~~~~a~~~~~~~~  429 (664)
                      .+.|+...+..+...+.
T Consensus       449 ~ra~d~~~v~~i~~~ll  465 (566)
T PF07575_consen  449 IRAGDYSLVTRIADRLL  465 (566)
T ss_dssp             H----------------
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            55555544444444333

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.37  E-value=13  Score=38.13  Aligned_cols=152  Identities=11%  Similarity=0.068  Sum_probs=93.7

Q ss_pred             HHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006010           93 YANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHR  172 (664)
Q Consensus        93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  172 (664)
                      +.-.|+++.|..++-.+.       ......++..+.++|..++|+++-        ..|+.     -.....+.|+++.
T Consensus       596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s--------~D~d~-----rFelal~lgrl~i  655 (794)
T KOG0276|consen  596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS--------TDPDQ-----RFELALKLGRLDI  655 (794)
T ss_pred             HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC--------CChhh-----hhhhhhhcCcHHH
Confidence            334566666655443332       335566777777888888877652        11221     1233456788888


Q ss_pred             HHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010          173 ALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDE  252 (664)
Q Consensus       173 A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  252 (664)
                      |.++..+..         +..-|..|..+....|++..|.+.|.....         |..|+-.+...|+-+....+-..
T Consensus       656 A~~la~e~~---------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~  717 (794)
T KOG0276|consen  656 AFDLAVEAN---------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL  717 (794)
T ss_pred             HHHHHHhhc---------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence            877766542         445688888888888888888888876553         34566666667776655555555


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          253 MQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      ..+.|.. +     ....+|...|+++++.+++..-
T Consensus       718 ~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  718 AKKQGKN-N-----LAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             HHhhccc-c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence            5555521 2     2233566678888888777654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.29  E-value=7.6  Score=33.87  Aligned_cols=78  Identities=13%  Similarity=-0.034  Sum_probs=48.4

Q ss_pred             HHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC---CCCCCHHHHHHHHHHHHhcC
Q 006010          165 IQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR---NCEPDIYTYCTLMDGLCKEN  241 (664)
Q Consensus       165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g  241 (664)
                      .+.|+ +.|.+.|-.+..   .+.--+......+...| -..+.+++++++....+.   +-.+|+..+.+|+..+.+.|
T Consensus       118 sr~~d-~~A~~~fL~~E~---~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~  192 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEG---TPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK  192 (203)
T ss_pred             hccCc-HHHHHHHHHHcC---CCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            33344 567777777755   33333444444444444 456777888777766442   22567788888888888888


Q ss_pred             ChhHHH
Q 006010          242 RLDEAV  247 (664)
Q Consensus       242 ~~~~a~  247 (664)
                      +++.|.
T Consensus       193 ~~e~AY  198 (203)
T PF11207_consen  193 NYEQAY  198 (203)
T ss_pred             chhhhh
Confidence            887764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.75  E-value=52  Score=35.83  Aligned_cols=227  Identities=13%  Similarity=0.076  Sum_probs=122.1

Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 006010          343 VKLGRAVDGARVLMSMEERKFHVNE-------YIYSTLIS-GLFKEGKAEDAMKLWKQMMEK----GCKPNTVVYSALID  410 (664)
Q Consensus       343 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~  410 (664)
                      ....++.+|..++.++...-..|+.       ..++.+-. .....|+++.|.++-+.....    -..+....+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            4567899999998887665333222       12333322 234578889999988887764    12345566777778


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHH---HHH--HHHHHhcCCh--HHHHHHHHHHHHCC---CC---CCHHHHHH
Q 006010          411 GLCRVGKPDEAEEILFEMINNGCAANAFTY---SSL--MKGFFESGKG--HKAVEIWKDMAKNN---CV---YNEVCYSV  477 (664)
Q Consensus       411 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~~~  477 (664)
                      +..-.|++++|..+..+..+..-..+...+   ..+  ...+..+|+.  .+....+.......   .+   +-......
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            888889999999888777654222233322   222  2234556632  23333343333221   01   12223444


Q ss_pred             HHHHHHc-CCChHHHHHHHHHHHhCCCCcCHHh--HHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC--HhHHHHHHH
Q 006010          478 LIHGLCE-DGKLREARMVWTQMLSRGCKPDVVA--YSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD--VFTYNILLN  552 (664)
Q Consensus       478 l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~  552 (664)
                      +..++.+ .+...++..-+.--......|-...  +..|+......|+.++|...++++...-....+.  ...-...+.
T Consensus       586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~  665 (894)
T COG2909         586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK  665 (894)
T ss_pred             HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence            4444444 1222333333332222222222222  2367778888999999999998885433333222  222222222


Q ss_pred             H--HHHcCChhHHHHHHHH
Q 006010          553 A--LCKQSNISHSIDLLNS  569 (664)
Q Consensus       553 ~--~~~~g~~~~A~~~~~~  569 (664)
                      .  ....|+.+.+.....+
T Consensus       666 ~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         666 LILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHhcccCCHHHHHHHHHh
Confidence            2  2357888888877766

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=86.16  E-value=36  Score=33.46  Aligned_cols=65  Identities=15%  Similarity=0.123  Sum_probs=36.6

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKP---NTVVYSALIDGLCRVGKPDEAEEILFEMIN  430 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  430 (664)
                      ...++..++..+.+.|.++.|...+..+...+...   .+...-.-+...-..|+..+|...++..+.
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33455666666666777777776666666533111   222333334445556666777776666665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.43  E-value=2.9  Score=38.71  Aligned_cols=95  Identities=9%  Similarity=0.149  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH-----HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK-----SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN  191 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  191 (664)
                      ........+.......+.++++..+.++..    .|+..     +-..+++.+.+ -++++++.+...-+.   .|+-||
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRh----s~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIq---YGiF~d  134 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRH----SPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQ---YGIFPD  134 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhc----CcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcch---hccccc
Confidence            333344444444556667777777666632    22210     11122222222 244455555444444   455555


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010          192 TLTFNLVIKTVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       192 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~  219 (664)
                      ..+++.+|..+.+.+++.+|.++.-.|.
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            5555555555555555555555544444

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=85.36  E-value=12  Score=32.34  Aligned_cols=88  Identities=11%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             HHhcCCHHHHHHHHHHhhhcCCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Q 006010          128 YGKAHLVEEAIRLFHTMVDEFHCKRT-----VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTV  202 (664)
Q Consensus       128 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  202 (664)
                      +...|++++|..-|...+..  +++.     ...|..-..++++.+.++.|++-..+.++..+    ........-..+|
T Consensus       105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p----ty~kAl~RRAeay  178 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP----TYEKALERRAEAY  178 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc----hhHHHHHHHHHHH
Confidence            34556666666666655543  2222     12344444555566666666665555555211    1222333445556


Q ss_pred             HhcCChhHHHHHHhhcccC
Q 006010          203 CRLGLVDNAIQLFREMPVR  221 (664)
Q Consensus       203 ~~~g~~~~A~~~~~~~~~~  221 (664)
                      .+...+++|++-|..+.+.
T Consensus       179 ek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  179 EKMEKYEEALEDYKKILES  197 (271)
T ss_pred             HhhhhHHHHHHHHHHHHHh
Confidence            6666666666666666555

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=84.66  E-value=66  Score=35.12  Aligned_cols=50  Identities=24%  Similarity=0.149  Sum_probs=24.3

Q ss_pred             cCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010          240 ENRLDEAVLLLDEMQVD----GCFPTPVTFNVLINGLCKNGELGRAAKLVDNMF  289 (664)
Q Consensus       240 ~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  289 (664)
                      .|+++.|.++-+.....    -..+....+..+..+..-.|++++|..+..+..
T Consensus       471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~  524 (894)
T COG2909         471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE  524 (894)
T ss_pred             cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence            45555555555544332    112233444445555555566666655555443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=84.62  E-value=1.5  Score=25.24  Aligned_cols=26  Identities=8%  Similarity=0.220  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          547 YNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       547 ~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      |..+...|...|++++|...|++.++
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444555555555555555555544

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=84.25  E-value=0.92  Score=25.90  Aligned_cols=25  Identities=12%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             HHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          605 ELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       605 ~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      .+++++.+.|++++|.+.|++++++
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4677799999999999999999875

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.20  E-value=2.7  Score=25.52  Aligned_cols=28  Identities=25%  Similarity=0.465  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          155 KSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      .+++.+...|...|++++|..++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4566777777777777777777777655

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.97  E-value=36  Score=31.60  Aligned_cols=70  Identities=20%  Similarity=0.240  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD-----RGCDPDLVT  581 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~  581 (664)
                      ++......|..+|.+.+|.++.++.++.++-   +...|-.++..+...|+--.|..-++++.+     .|+..+...
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL---~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi  355 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL---SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI  355 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChh---hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence            3455567889999999999999999765443   677788899999999998888888887763     466665543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.87  E-value=66  Score=34.48  Aligned_cols=102  Identities=15%  Similarity=0.075  Sum_probs=56.9

Q ss_pred             HHHHHhcCChhHHHHHHhhcccCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006010          199 IKTVCRLGLVDNAIQLFREMPVRNCEP---DIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN  275 (664)
Q Consensus       199 l~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  275 (664)
                      +..+.+.+.+++|+.+.+.....  .|   -......++..+...|++++|-...-.|...    +..-|...+..+...
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~  436 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL  436 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence            55666777777777776655433  33   2334566667777777777777766666653    555565555555555


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010          276 GELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL  309 (664)
Q Consensus       276 g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  309 (664)
                      ++....-.++   .......+...|..++..+..
T Consensus       437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence            5443332222   111112344566666666655

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=83.66  E-value=38  Score=31.60  Aligned_cols=117  Identities=9%  Similarity=0.121  Sum_probs=55.1

Q ss_pred             CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc-CC-HhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhH
Q 006010          133 LVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE-GL-YHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDN  210 (664)
Q Consensus       133 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  210 (664)
                      .+.+|+++|+..-.+...-.|......+++.+... +. ...--++.+-+...  .+-.++..+...++..+++.+++..
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t--~~~~l~~~vi~~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVST--FSKSLTRNVIISILEILAESRDWNK  220 (292)
T ss_pred             HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhc--cccCCChhHHHHHHHHHHhcccHHH
Confidence            35556666653311111233455555556555542 11 11112222222221  1233444455556666666666666


Q ss_pred             HHHHHhhcccC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010          211 AIQLFREMPVR-NCEPDIYTYCTLMDGLCKENRLDEAVLLLD  251 (664)
Q Consensus       211 A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  251 (664)
                      -.++++..... +...|...|..+++...+.|+..-..++.+
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence            66666554433 334455556666666666666554444433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=83.33  E-value=2.7  Score=24.19  Aligned_cols=27  Identities=22%  Similarity=0.474  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          156 SFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      +|..+...+.+.|++++|...|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455666666666666666666666655

...

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=82.68  E-value=3.1  Score=25.26  Aligned_cols=28  Identities=25%  Similarity=0.347  Sum_probs=19.1

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          545 FTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      .+++.+...|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3566777777777777777777777664

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=82.30  E-value=8.6  Score=28.77  Aligned_cols=45  Identities=9%  Similarity=0.165  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010          489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEM  533 (664)
Q Consensus       489 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (664)
                      -++.+-++.+....+.|++.+..+.+.+|.+.+++.-|+++|+.+
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v   68 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI   68 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            344444555555555555555555666666666666666665544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=82.29  E-value=51  Score=32.01  Aligned_cols=122  Identities=11%  Similarity=0.144  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH---cCCHHHHHHHHH
Q 006010          455 KAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN---AGSVEEALKLFN  531 (664)
Q Consensus       455 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~  531 (664)
                      .-+.+++++.+.+ +.+...+..++..+.+..+.++..+-|++++... +-+...|...+.....   .-.++....+|.
T Consensus        49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            3445555555553 3455555556666666666666666666666542 1134455555544332   123444444444


Q ss_pred             HhhhcC----CCC------CCC--Hh---HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC
Q 006010          532 EMLCLE----PKS------QPD--VF---TYNILLNALCKQSNISHSIDLLNSMMDRGC-DPD  578 (664)
Q Consensus       532 ~~~~~~----~~~------~~~--~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~  578 (664)
                      +.+..-    .+.      .++  ..   .+..+...+.+.|..+.|+.+++-+++.++ .|.
T Consensus       127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~  189 (321)
T PF08424_consen  127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE  189 (321)
T ss_pred             HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence            443110    010      011  11   122223334678999999999999998644 343

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=82.18  E-value=7.8  Score=36.46  Aligned_cols=89  Identities=13%  Similarity=-0.002  Sum_probs=39.4

Q ss_pred             HHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 006010           91 QHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLY  170 (664)
Q Consensus        91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  170 (664)
                      +.|.+.|.+++|+.+|.......+ .+...+...+.+|.+..++..|..-....+..  ...-+.+|.--+.+--..|+.
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHhhH
Confidence            445555555555555555554332 23334444444555555555444444333221  111223333333333334444


Q ss_pred             hHHHHHHHHHHh
Q 006010          171 HRALEFYNHIVN  182 (664)
Q Consensus       171 ~~A~~~~~~~~~  182 (664)
                      .+|.+-++..++
T Consensus       182 ~EAKkD~E~vL~  193 (536)
T KOG4648|consen  182 MEAKKDCETVLA  193 (536)
T ss_pred             HHHHHhHHHHHh
Confidence            555555554444

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.17  E-value=2.2  Score=26.62  Aligned_cols=26  Identities=15%  Similarity=0.229  Sum_probs=22.3

Q ss_pred             HHHHHhhhcCCcchHHHHHHHHHHcC
Q 006010          605 ELAIRLFKRQRTSGGFKIVEVMLQKF  630 (664)
Q Consensus       605 ~l~~~~~~~g~~~~A~~~~~~~~~~~  630 (664)
                      .|+.+|...|+.+.|.++++++...|
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            35677999999999999999998654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.02  E-value=66  Score=35.60  Aligned_cols=61  Identities=16%  Similarity=0.050  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHH-HHH-H--HHHHHhcCCHHHHHHHHHHhhh
Q 006010           86 FYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKS-FIF-I--FKAYGKAHLVEEAIRLFHTMVD  146 (664)
Q Consensus        86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~-l--~~~~~~~g~~~~A~~~~~~~~~  146 (664)
                      +..-+..+.+..++++|..+.+.....++.....+ ... +  +--+..+|++++|.+.|.++..
T Consensus       310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~  374 (877)
T KOG2063|consen  310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI  374 (877)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence            56667777777778888777666554332211111 111 1  2234578899999999988743

>PRK09687 putative lyase; Provisional

Probab=81.80  E-value=48  Score=31.38  Aligned_cols=201  Identities=12%  Similarity=0.055  Sum_probs=111.6

Q ss_pred             CHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHHCCCCCC
Q 006010          366 NEYIYSTLISGLFKEGKA----EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKP-----DEAEEILFEMINNGCAAN  436 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~  436 (664)
                      +...-...+.++.+.|+.    +++...+..+...  .++..+-...+.++...+..     ..+...+.....   .++
T Consensus        67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~  141 (280)
T PRK09687         67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS  141 (280)
T ss_pred             CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence            344444445555555542    3455556555333  24444444455554443321     223333333333   235


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006010          437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG-KLREARMVWTQMLSRGCKPDVVAYSSMIH  515 (664)
Q Consensus       437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  515 (664)
                      ..+-...+.++.+.++ .+++..+-.+.+   .++...-...+.++...+ +...+...+..+..   .++..+-...+.
T Consensus       142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~  214 (280)
T PRK09687        142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII  214 (280)
T ss_pred             HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence            5566666677777665 455565555554   244455555556666543 24466666666664   456667777788


Q ss_pred             HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010          516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL  589 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~  589 (664)
                      ++.+.|+ ..|+..+-+.+  +.+   +  .....+.++...|.. +|+..+.++.+  -.||.......+.+|
T Consensus       215 aLg~~~~-~~av~~Li~~L--~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~  277 (280)
T PRK09687        215 GLALRKD-KRVLSVLIKEL--KKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL  277 (280)
T ss_pred             HHHccCC-hhHHHHHHHHH--cCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence            8888887 45666555553  222   2  234566777778874 68888888886  355766665555553

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=81.75  E-value=12  Score=28.07  Aligned_cols=65  Identities=14%  Similarity=0.214  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010          522 SVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL  589 (664)
Q Consensus       522 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~  589 (664)
                      +.=++.+-++.+  ...+..|++....+.+++|.+.+++.-|+++++..... +..+...|..+++.+
T Consensus        22 D~we~rr~mN~l--~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei   86 (103)
T cd00923          22 DGWELRRGLNNL--FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI   86 (103)
T ss_pred             cHHHHHHHHHHH--hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence            344566666666  45578899999999999999999999999999988743 333555677777663

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.74  E-value=11  Score=33.21  Aligned_cols=75  Identities=13%  Similarity=0.163  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCcCHHhHHHHHH
Q 006010          440 YSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG--CKPDVVAYSSMIH  515 (664)
Q Consensus       440 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~  515 (664)
                      .+..+..+.+.+..++++...+.-.+.. |.+..+-..+++.+|-.|++++|..-++-.-...  ..+....|..++.
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            3445566777788888888888777766 5566677778888888888888887776655431  1222344555544

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=81.00  E-value=85  Score=33.78  Aligned_cols=61  Identities=15%  Similarity=0.127  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCh-------hHHHHHHHHHHhC
Q 006010          194 TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRL-------DEAVLLLDEMQVD  256 (664)
Q Consensus       194 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~  256 (664)
                      .| .++-.+.|.|++++|.++..+.... .......+...+..|....+-       ++...-|++....
T Consensus       114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~  181 (613)
T PF04097_consen  114 IW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN  181 (613)
T ss_dssp             HH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred             cH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            44 5667888999999999999555443 234456677788888764322       3445555555544

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=80.26  E-value=87  Score=33.40  Aligned_cols=34  Identities=15%  Similarity=0.192  Sum_probs=0.0

Q ss_pred             HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          555 CKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       555 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      .+.|++.+|.+.+-.+.+.+..|...-...+.++
T Consensus       506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~  539 (566)
T PF07575_consen  506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA  539 (566)
T ss_dssp             ----------------------------------
T ss_pred             HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence            3458888888888888876677766554444443

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.24  E-value=2.4  Score=22.81  Aligned_cols=21  Identities=10%  Similarity=-0.102  Sum_probs=11.8

Q ss_pred             HHHHHHhcccchHHHHHHHHH
Q 006010          639 ERVVQELCRPKRIQAAINKCW  659 (664)
Q Consensus       639 ~~l~~~~~~~g~~~~A~~~~~  659 (664)
                      ..++..+...|+.++|...++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHHh
Confidence            445555566666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.10  E-value=9.1  Score=33.66  Aligned_cols=66  Identities=20%  Similarity=0.307  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL  579 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  579 (664)
                      |...-++.+.+.+..++|+...++-++.+|.   |...-..++..++-.|+|++|..-++-.-+  +.|+.
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~   68 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT---DAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQD   68 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcCCc---cccchhHHHHHHhhcchHHHHHHHHHHHhh--cCccc
Confidence            4556678889999999999999887654333   455566788999999999999988887776  45543

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=80.09  E-value=23  Score=26.74  Aligned_cols=77  Identities=9%  Similarity=0.073  Sum_probs=49.3

Q ss_pred             CcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 006010           98 DFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFY  177 (664)
Q Consensus        98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  177 (664)
                      ..++|..+-+.+...+.. .+.+-...+..+...|+|++|..+.+..     +.||...|.++..  .+.|..+++...+
T Consensus        20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl   91 (115)
T TIGR02508        20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRL   91 (115)
T ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence            466777777766655422 3333334445567888888888877655     5788887766644  5667777666666


Q ss_pred             HHHHh
Q 006010          178 NHIVN  182 (664)
Q Consensus       178 ~~~~~  182 (664)
                      ..+..
T Consensus        92 ~rla~   96 (115)
T TIGR02508        92 NRLAA   96 (115)
T ss_pred             HHHHh
Confidence            66654

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	664
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 83.7 bits (205), Expect = 9e-17
 Identities = 42/359 (11%), Positives = 102/359 (28%), Gaps = 19/359 (5%)

Query: 147 EFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLG 206
           +       +   +     +       A          +    L     +N V+    R G
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179

Query: 207 LVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVL-LLDEMQVDGCFPTPVTF 265
                + +   +      PD+ +Y   +  + ++++    +   L++M  +G     +  
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239

Query: 266 NVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVA 325
            VL++   +   L    K+     L   LP  V  + L+  +  K        L   +  
Sbjct: 240 AVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299

Query: 326 SKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK---EGK 382
            +C+  +           +L   +     ++S+E+      E  ++       +   E  
Sbjct: 300 LQCLFEK-----------QLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKA 348

Query: 383 AEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSS 442
              A++  K  +E+            +  L       E   +L +++    A      + 
Sbjct: 349 LCRALRETKNRLEREVYEGRFSLYPFLCLL----DEREVVRMLLQVLQALPAQGESFTTL 404

Query: 443 LMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR 501
             +    +   H                +   Y  L+    E  +    R  W  + + 
Sbjct: 405 ARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAP 463

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 76.8 bits (187), Expect = 1e-14
 Identities = 33/297 (11%), Positives = 87/297 (29%), Gaps = 19/297 (6%)

Query: 359 EERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKP 418
             R+  V   + S  ++G  ++   +     W++             + L+         
Sbjct: 60  LTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQ-----------LARLLQEAPGKLSL 108

Query: 419 DEAEEILFEMINNGCAANAFTYSSLMKGFFESG---KGHKAVEIWKDMAKNNCVYNEVCY 475
           D  +    +      +       +  K    +      H  + +     +   +     Y
Sbjct: 109 DVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY 168

Query: 476 SVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC 535
           + ++ G    G  +E   V   +   G  PD+++Y++ +  +         ++   E + 
Sbjct: 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228

Query: 536 LEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV-TCNIFLTALKEKLE 594
            E      +F   +LL+   + + +     +  +       P  V T  +      +   
Sbjct: 229 QEGLKLQALF-TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287

Query: 595 APQDGTDFLNELAIRLFKRQR---TSGGFKIVEVMLQKFLSPQTSTWERVVQELCRP 648
                     +    LF++Q     +    +V V      S +     + ++ L   
Sbjct: 288 VSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQ 344

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 53.3 bits (126), Expect = 2e-07
 Identities = 46/503 (9%), Positives = 122/503 (24%), Gaps = 74/503 (14%)

Query: 8   HTKILLTITNSAMKMKTLSLTTIPSERSHRFFSV------RSAVSSNKQMETEPQGNAKS 61
             K+ +   +   K  T  L   P   S +          ++  S  ++        A  
Sbjct: 45  KAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPG 104

Query: 62  EQPFSDEIFNSTPKLGSYQLGDS-TFYSLIQHYANSGDFKSLEMVLYRMRREKR---VVL 117
           +     E   S     +   G      +  +    +        +L     +++   ++ 
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164

Query: 118 EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFY 177
              +  +   + +    +E + +   +                                 
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMV--------------------------------- 191

Query: 178 NHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQ-LFREMPVRNCEPDIYTYCTLMDG 236
                 K   + P+ L++   ++ + R       I+    +M     +        L+  
Sbjct: 192 ------KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245

Query: 237 LCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN 296
             +   L     +     +    P PV  + L+  +          KL   +    CL  
Sbjct: 246 EDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305

Query: 297 EVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAV--DGARV 354
           +           L   L   V ++     +            +  L            R 
Sbjct: 306 K----------QLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRE 355

Query: 355 LMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCR 414
             +  ER+ +   +     +  L +       +++ + +  +G    T+          R
Sbjct: 356 TKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSR 415

Query: 415 VGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEV- 473
                  +             +   Y  L+    E  +     + W+ +     +  +  
Sbjct: 416 H----VVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALREQPW 471

Query: 474 -------CYSVLIHGLCEDGKLR 489
                     +L   L +  ++ 
Sbjct: 472 PLPVQMELGKLLAEMLVQATQMP 494

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.8 bits (175), Expect = 5e-13
 Identities = 99/642 (15%), Positives = 203/642 (31%), Gaps = 178/642 (27%)

Query: 27  LTTIPSERSHRFFSVRSAVSSN-----KQMETEPQGNAKSEQPFS---DEIFNSTPKLGS 78
           L +   E   +F  V   +  N       ++TE +  +   + +    D ++N       
Sbjct: 71  LLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 79  YQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLE--KSFIFIFKAYGKAHLVEE 136
           Y +      S +Q Y        L   L  +R  K V+++            GK  +  +
Sbjct: 129 YNV------SRLQPY------LKLRQALLELRPAKNVLIDGVLGS-------GKTWVALD 169

Query: 137 AIRLFHTMVDEFHCK------RTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILP 190
                + +  +   K      +   S  +VL   + + L ++     N    + H + + 
Sbjct: 170 VCL-SYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDP--NWTSRSDHSSNIK 224

Query: 191 NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNC--------EPDIYTYCTLMDGLCKENR 242
             L  + +   + R         L +  P  NC            +      +  CK   
Sbjct: 225 --LRIHSIQAELRR---------LLKSKPYENCLLVLLNVQNAKAWNA---FNLSCK--- 267

Query: 243 LDEAVLLL-------DEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP 295
               +LL        D   +     T ++ +     L  +       K +D       LP
Sbjct: 268 ----ILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDLP 319

Query: 296 NEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGA-RV 354
            EV      +           +S++   +  +           +N   KL   ++ +  V
Sbjct: 320 REV---LTTNPR--------RLSIIAESI--RDGLATWDNWKHVN-CDKLTTIIESSLNV 365

Query: 355 LMSMEERK-------FHVNEYIYSTLISGLFKEGKAEDAM----KLWKQ-MMEKGCKPNT 402
           L   E RK       F  + +I + L+S ++ +    D M    KL K  ++EK  K +T
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 403 V-VYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWK 461
           + + S  ++      K +    +   ++++        Y ++ K F         +  + 
Sbjct: 426 ISIPSIYLELKV---KLENEYALHRSIVDH--------Y-NIPKTF----DSDDLIPPYL 469

Query: 462 DMAKNNCVYNEVCYSVLIH--GLCEDGKLREARMV-----WTQMLSRGCKPDVVAYSSMI 514
           D       Y+ + +    H   +    ++   RMV     + +   R       A  S++
Sbjct: 470 D----QYFYSHIGH----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 515 HGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG 574
           + L         LK +   +C    + P    Y  L+NA+         +D L       
Sbjct: 522 NTLQQ-------LKFYKPYIC---DNDP---KYERLVNAI---------LDFL-----PK 554

Query: 575 CDPDLVTC---NIFLTALKEKLEAPQDGTDFLNELAIRLFKR 613
            + +L+     ++   AL           + + E A +  +R
Sbjct: 555 IEENLICSKYTDLLRIAL-------MAEDEAIFEEAHKQVQR 589

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 48.3 bits (114), Expect = 8e-06
 Identities = 37/224 (16%), Positives = 78/224 (34%), Gaps = 47/224 (20%)

Query: 370 YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN-TVVYSALIDGLCRVGKPDEAEEILFEM 428
            + L +   ++G  E+A++L+++ +E    P     +S L   L + GK  EA       
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHY--- 66

Query: 429 INNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKL 488
                                     +A+ I    A          YS + + L E   +
Sbjct: 67  -------------------------KEAIRISPTFAD--------AYSNMGNTLKEMQDV 93

Query: 489 REARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTY 547
           + A   +T+ +     P    A+S++     ++G++ EA+  +   L L+P        Y
Sbjct: 94  QGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD---FPDAY 148

Query: 548 NILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKE 591
             L + L    + +   + +  ++      D +  N   +    
Sbjct: 149 CNLAHCLQIVCDWTDYDERMKKLVS--IVADQLEKNRLPSVHPH 190

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 37/262 (14%), Positives = 74/262 (28%), Gaps = 25/262 (9%)

Query: 353 RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGL 412
           RV  S  ER    + ++Y   ++    + K    +      ++    P         + L
Sbjct: 24  RVKPSSPERDVERDVFLYRAYLA----QRKYGVVLDE----IKPSSAPELQAVRMFAEYL 75

Query: 413 CRVGKPDEAEEILFEMI-NNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN 471
               + D     L   +  +    N          +F       A+             +
Sbjct: 76  ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG------DS 129

Query: 472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD---VVAYSSMIHGLCNAGSVEEALK 528
             C ++ +  L +  +L  AR    +M       D       ++ +        +++A  
Sbjct: 130 LECMAMTVQILLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGEKLQDAYY 187

Query: 529 LFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588
           +F EM        P +   N        Q     +  +L   +D+  D       I L  
Sbjct: 188 IFQEMADKCS---PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVV 242

Query: 589 LKEKLEAPQDGTDFLNELAIRL 610
           L + L  P + T+         
Sbjct: 243 LSQHLGKPPEVTNRYLSQLKDA 264

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 32/244 (13%), Positives = 65/244 (26%), Gaps = 49/244 (20%)

Query: 352 ARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDG 411
           A +   M       N        S  F +   + A++   Q     C       +  +  
Sbjct: 86  AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLEC------MAMTVQI 139

Query: 412 LCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN 471
           L ++ + D A + L +M +        T + L   +     G                  
Sbjct: 140 LLKLDRLDLARKELKKMQD---QDEDATLTQLATAWVSLAAG------------------ 178

Query: 472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFN 531
                          KL++A  ++ +M  + C P ++  +         G  E A  +  
Sbjct: 179 -------------GEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224

Query: 532 EMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKE 591
           E L  +        T   L+             +   S + +         + F+   + 
Sbjct: 225 EALDKDSG---HPETLINLVVLSQHLGKPPEVTNRYLSQL-KDAHRS----HPFIKEYRA 276

Query: 592 KLEA 595
           K   
Sbjct: 277 KEND 280

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 36/282 (12%), Positives = 76/282 (26%), Gaps = 24/282 (8%)

Query: 295 PNEV-TYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEV-TYGTIINGLVKLGRAVDGA 352
           P +V    +   G      + + + +L +       P +V    +   G   L   V   
Sbjct: 103 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PEQVVAIASHDGGKQALET-VQAL 159

Query: 353 RVLMSMEERKFHVN-EYI--YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVV-YSAL 408
              + +  +   +  E +   ++   G       +  + +  Q       P  VV  ++ 
Sbjct: 160 ---LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASN 214

Query: 409 IDGLCRVGKPDEAEEILFEMIN-NGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN 467
             G   +        +L +              +S   G        + + +    A   
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASNGGGKQALETVQRLLPVL-CQAHGL 271

Query: 468 CVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEA 526
                V  +    G      ++    V  Q       P  VVA +S   G     +V+  
Sbjct: 272 TPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL--TPQQVVAIASNGGGKQALETVQRL 329

Query: 527 LKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLN 568
           L +  +   L P+    V               +   + +L 
Sbjct: 330 LPVLCQAHGLTPQ---QVVAIASHDGGKQALETVQRLLPVLC 368

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	664
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.93
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.87
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.87
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.86
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.8
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.8
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.74
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.71
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.69
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.68
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.67
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.67
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.66
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.66
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.63
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.62
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.61
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.61
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.6
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.58
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.57
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.57
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.57
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.52
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.51
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.5
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.49
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.47
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.47
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.46
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.45
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.45
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.44
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.43
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.4
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.37
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.36
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.34
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.34
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.31
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.3
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.29
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.29
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.28
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.27
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.21
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.2
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.18
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.17
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.16
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.14
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.1
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.04
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.03
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.01
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.01
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.01
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.01
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.0
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.99
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.99
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.97
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.97
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.96
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.96
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.94
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.93
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.9
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.89
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.88
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.87
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.81
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.78
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.74
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.74
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.74
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.73
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.71
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.71
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.67
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.67
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.67
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.66
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.65
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.64
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.64
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.64
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.62
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.62
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.61
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.56
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.56
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.56
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.55
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.55
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.55
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.53
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.53
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.53
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.53
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.53
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.5
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.5
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.49
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.49
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.44
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.43
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.41
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.41
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.39
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.35
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.35
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.35
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.34
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.33
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.28
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.28
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.27
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.26
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.24
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.24
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.23
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.22
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.21
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.2
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.2
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.2
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.19
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.12
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.12
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.11
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.11
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.03
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.01
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.01
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.98
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.98
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.92
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.87
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.78
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.76
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.75
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.69
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.68
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.66
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.65
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.61
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.55
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.49
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.48
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.4
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.96
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.9
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.88
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.84
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.84
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.83
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.77
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.74
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.68
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.66
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.62
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.57
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.54
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.43
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.41
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.32
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.16
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.11
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.0
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.74
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.54
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.37
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.25
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.1
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.09
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.76
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.69
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.64
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.08
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.95
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.82
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.77
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.65
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	92.32
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	92.28
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	92.24
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	92.18
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.17
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.74
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.66
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.47
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.29
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.7
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.4
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	90.21
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	88.4
2p58_C	116	Putative type III secretion protein YSCG; type III	86.23
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	85.41
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.75
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	83.77
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	83.76
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	83.35
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	82.8
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	82.3
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	81.63
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	81.27
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	81.21

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.8e-41  Score=357.13  Aligned_cols=488  Identities=10%  Similarity=0.028  Sum_probs=415.0

Q ss_pred             CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 006010           81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV  160 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  160 (664)
                      ++...|..++..+.+.|++++|..+|+++....  ++...+..++.+|.+.|++++|+.+|+.+..   .++++.+++.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l  156 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLA  156 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHH
Confidence            467789999999999999999999999998654  3557888999999999999999999998854   36789999999


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcc------------cCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHH
Q 006010          161 LNVIIQEGLYHRALEFYNHIVNAK------------HMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIY  228 (664)
Q Consensus       161 ~~~~~~~~~~~~A~~~~~~~~~~~------------~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  228 (664)
                      +.+|.+.|++++|.++|+++....            ..+.+++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..
T Consensus       157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~  235 (597)
T 2xpi_A          157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYE  235 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhH
Confidence            999999999999999998543211            01234467899999999999999999999999998875 44566


Q ss_pred             HHHHHHHHHHhcCChhHHH--HH-HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006010          229 TYCTLMDGLCKENRLDEAV--LL-LDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIH  305 (664)
Q Consensus       229 ~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~  305 (664)
                      .+..+...+...+..+.+.  .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++...  +++..+++.++.
T Consensus       236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~  313 (597)
T 2xpi_A          236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD  313 (597)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence            6777766554443322221  11 455555444455667778888999999999999999998765  578999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 006010          306 GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAED  385 (664)
Q Consensus       306 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  385 (664)
                      .|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+..+ .+..+++.++..|.+.|++++
T Consensus       314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~  391 (597)
T 2xpi_A          314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISE  391 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHH
Confidence            9999999999999999999875 44788999999999999999999999999987654 378899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010          386 AMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAK  465 (664)
Q Consensus       386 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  465 (664)
                      |.++|+++.+... .+..+|..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+
T Consensus       392 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  469 (597)
T 2xpi_A          392 ARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA  469 (597)
T ss_dssp             HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999988643 368899999999999999999999999999875 66889999999999999999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCcC--HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCC
Q 006010          466 NNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR----GCKPD--VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK  539 (664)
Q Consensus       466 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  539 (664)
                      .. +.+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.++|++++...+.
T Consensus       470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  548 (597)
T 2xpi_A          470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN  548 (597)
T ss_dssp             HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred             hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            76 567899999999999999999999999999876    56777  789999999999999999999999999765443


Q ss_pred             CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFL  586 (664)
Q Consensus       540 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll  586 (664)
                         +..+|..+..+|.+.|++++|.+.++++.+  +.|+.......+
T Consensus       549 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l  590 (597)
T 2xpi_A          549 ---DANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLL  590 (597)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             ---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHH
Confidence               788999999999999999999999999998  567655444333

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.2e-41  Score=357.37  Aligned_cols=506  Identities=12%  Similarity=0.028  Sum_probs=377.1

Q ss_pred             HHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006010           93 YANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHR  172 (664)
Q Consensus        93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  172 (664)
                      +...|.+..+...+...    +.++...|+.++..|.+.|++++|+.+|+++..   ..|+..++..++.+|.+.|++++
T Consensus        63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~  135 (597)
T 2xpi_A           63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYAR  135 (597)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHH
Confidence            33444444444443322    223455677777777777777777777777754   34566677777777777777777


Q ss_pred             HHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010          173 ALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDE  252 (664)
Q Consensus       173 A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  252 (664)
                      |..+|+.+..     .+++..+++.++.+|.+.|++++|+++|+++....    ..     ...+.+.++          
T Consensus       136 A~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-----~~~~~~~~~----------  191 (597)
T 2xpi_A          136 AKCLLTKEDL-----YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR----KD-----EKNANKLLM----------  191 (597)
T ss_dssp             HHHHHHHTCG-----GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------------------C----------
T ss_pred             HHHHHHHHhc-----cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc----cc-----ccccccccc----------
Confidence            7777777643     34566777777777777777777777777533221    00     001111111          


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH--HH-HHHHHHCCCC
Q 006010          253 MQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAV--SL-LDRMVASKCM  329 (664)
Q Consensus       253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~  329 (664)
                       ...+.+++..+|+.++.+|.+.|++++|+++|++|...++. +...+..+...+...+..+.+.  .+ +..+...+..
T Consensus       192 -~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  269 (597)
T 2xpi_A          192 -QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA  269 (597)
T ss_dssp             -CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred             -cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence             11234556788888888888888888888888888876432 4555555555443332222211  11 3444444334


Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006010          330 PNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALI  409 (664)
Q Consensus       330 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  409 (664)
                      +...+|+.++..|.+.|++++|.++++++.+.  +++..+++.++.+|.+.|++++|+.+|+++.+.+.. +..++..++
T Consensus       270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~  346 (597)
T 2xpi_A          270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHL  346 (597)
T ss_dssp             HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHH
Confidence            44556677788888899999999999988775  468899999999999999999999999999987643 778899999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 006010          410 DGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR  489 (664)
Q Consensus       410 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  489 (664)
                      .++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus       347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~  424 (597)
T 2xpi_A          347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD  424 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999998764 6688999999999999999999999999998865 567889999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010          490 EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNS  569 (664)
Q Consensus       490 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  569 (664)
                      +|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|++++...+.   +..+|+.++..|.+.|++++|.++|++
T Consensus       425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~  500 (597)
T 2xpi_A          425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---DPLLLNELGVVAFNKSDMQTAINHFQN  500 (597)
T ss_dssp             HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999864 447789999999999999999999999999765444   788999999999999999999999999


Q ss_pred             HHHC----CCCCC--HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHH
Q 006010          570 MMDR----GCDPD--LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQ  643 (664)
Q Consensus       570 ~~~~----~~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  643 (664)
                      +.+.    +..|+  ..++..+...                     |.+.|++++|.++++++.+.+ +.++..|..++.
T Consensus       501 ~~~~~~~~~~~p~~~~~~~~~l~~~---------------------~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~  558 (597)
T 2xpi_A          501 ALLLVKKTQSNEKPWAATWANLGHA---------------------YRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL  558 (597)
T ss_dssp             HHHHHHHSCCCSGGGHHHHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred             HHHhhhccccchhhHHHHHHHHHHH---------------------HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            9875    66777  5667777666                     999999999999999999863 558899999999


Q ss_pred             HhcccchHHHHHHHHHhhh
Q 006010          644 ELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       644 ~~~~~g~~~~A~~~~~~~l  662 (664)
                      +|.+.|++++|.+.+++.+
T Consensus       559 ~~~~~g~~~~A~~~~~~~l  577 (597)
T 2xpi_A          559 VYLHKKIPGLAITHLHESL  577 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHH
Confidence            9999999999999998765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=2.2e-27  Score=238.51  Aligned_cols=382  Identities=16%  Similarity=0.048  Sum_probs=188.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHh
Q 006010          125 FKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCR  204 (664)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  204 (664)
                      +..+.+.|++++|++.+..+.+.  .+.+...+..+...+.+.|++++|...++...+.    .+.+..+|..+...+.+
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~   79 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKE   79 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHH
Confidence            34445556666666666555443  3334455555555556666666666666555541    12244455555555556


Q ss_pred             cCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010          205 LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKL  284 (664)
Q Consensus       205 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  284 (664)
                      .|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.
T Consensus        80 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~  157 (388)
T 1w3b_A           80 RGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKAC  157 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            666666666665555442 3334455555555566666666666655555432 11233444455555555555555555


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 006010          285 VDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFH  364 (664)
Q Consensus       285 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  364 (664)
                      |+++....+ .+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+.+.....+.
T Consensus       158 ~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  235 (388)
T 1w3b_A          158 YLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN  235 (388)
T ss_dssp             HHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            555554421 134455555555555555555555555555432 222333444444444444444444444444333221


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          365 VNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLM  444 (664)
Q Consensus       365 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  444 (664)
                       +                                   ..++..+...+...|++++|...++++++.. +.+..++..+.
T Consensus       236 -~-----------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  278 (388)
T 1w3b_A          236 -H-----------------------------------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLA  278 (388)
T ss_dssp             -C-----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHH
T ss_pred             -C-----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence             2                                   3344444444444444444444444444432 22344444445


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHH
Q 006010          445 KGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVE  524 (664)
Q Consensus       445 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  524 (664)
                      ..+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..++.++.+.|+++
T Consensus       279 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  356 (388)
T 1w3b_A          279 NALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQ  356 (388)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence            55555555555555555544433 3444455555555555555555555555555431 223445555555555555555


Q ss_pred             HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010          525 EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS  558 (664)
Q Consensus       525 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  558 (664)
                      +|...|++++...|.   +...|..+...+...|
T Consensus       357 ~A~~~~~~a~~~~p~---~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          357 EALMHYKEAIRISPT---FADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhCCC---CHHHHHhHHHHHHHcc
Confidence            555555555433222   3444555555444433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=2.2e-27  Score=238.60  Aligned_cols=372  Identities=15%  Similarity=0.101  Sum_probs=274.1

Q ss_pred             HHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 006010          201 TVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGR  280 (664)
Q Consensus       201 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  280 (664)
                      .+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...... +.+..+|..+...|.+.|++++
T Consensus         8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence            3445555555555555554442 3344455555555556666666666665555432 3345566666666666666666


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010          281 AAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEE  360 (664)
Q Consensus       281 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  360 (664)
                      |+..|+++.... +.+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+.++.+
T Consensus        86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  163 (388)
T 1w3b_A           86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            666666665542 1234456666666666666666666666666542 22344555566666667777777777777766


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010          361 RKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTY  440 (664)
Q Consensus       361 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  440 (664)
                      ..+. +..++..+...+.+.|++++|+..|+++.+.+.. +...+..+...+...|++++|...++++.+.. +.+..++
T Consensus       164 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  240 (388)
T 1w3b_A          164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH  240 (388)
T ss_dssp             HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred             hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence            5433 5677788888888888888888888888876433 56778888889999999999999999998864 5578899


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc
Q 006010          441 SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA  520 (664)
Q Consensus       441 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  520 (664)
                      ..+...|...|++++|.+.++++.+.. +.+..+|..++..+...|++++|.+.++++++.. +.+..++..++..+...
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence            999999999999999999999999876 5567889999999999999999999999999863 55778999999999999


Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 006010          521 GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV-TCNIFL  586 (664)
Q Consensus       521 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll  586 (664)
                      |++++|...+++++...+.   +...+..+..++.+.|++++|...++++.+  ..|+.. .+..+.
T Consensus       319 g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg  380 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG  380 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTT---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHH
Confidence            9999999999999654333   677899999999999999999999999997  677644 344433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=1.7e-28  Score=249.79  Aligned_cols=202  Identities=18%  Similarity=0.205  Sum_probs=120.2

Q ss_pred             HHHhhcccCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hhHHH
Q 006010          213 QLFREMPVRNCEPDIY-TYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGE---------LGRAA  282 (664)
Q Consensus       213 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~a~  282 (664)
                      .+.+.+.+.+..+.+. .++.+|++|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+.         +++|.
T Consensus        11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~   90 (501)
T 4g26_A           11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF   90 (501)
T ss_dssp             -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence            3444444444333332 3555566666666666666666666666666666666666666654433         45566


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010          283 KLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERK  362 (664)
Q Consensus       283 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  362 (664)
                      ++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus        91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G  170 (501)
T 4g26_A           91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE  170 (501)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010          363 FHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCR  414 (664)
Q Consensus       363 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  414 (664)
                      +.||..+|+.|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus       171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            6666666666666666666666666666666666666666666666666554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=2.2e-28  Score=248.96  Aligned_cols=185  Identities=19%  Similarity=0.253  Sum_probs=100.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHhCCCCCCHHHH
Q 006010          195 FNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENR---------LDEAVLLLDEMQVDGCFPTPVTF  265 (664)
Q Consensus       195 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~~  265 (664)
                      ++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+.         +++|.++|++|...|+.||..+|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            444445555555555555555555555555555555555555444332         34455555555555555555555


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 006010          266 NVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKL  345 (664)
Q Consensus       266 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  345 (664)
                      +.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010          346 GRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK  379 (664)
Q Consensus       346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (664)
                      |+.++|.+++++|.+.+..|+..||+.++..|+.
T Consensus       189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            5555555555555555555555555555555543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-24  Score=227.39  Aligned_cols=277  Identities=10%  Similarity=-0.001  Sum_probs=212.4

Q ss_pred             HHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCC--------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010          297 EVTYNTLIHGLCL---KGNLDKAVSLLDRMVA-----SKC--------MPNEVTYGTIINGLVKLGRAVDGARVLMSMEE  360 (664)
Q Consensus       297 ~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  360 (664)
                      ...+......+..   .|++++|..+++++.+     ..-        +.+...+..+...+...|++++|...++++.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3344444444443   6778888888887776     311        12345667777788888888888888888877


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010          361 RKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTY  440 (664)
Q Consensus       361 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  440 (664)
                      ..+.  ...+..+..++...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+
T Consensus       266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  341 (514)
T 2gw1_A          266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY  341 (514)
T ss_dssp             HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred             hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence            6544  77778888888888888888888888887643 356678888888888899999999998888864 4567788


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-------HHhHHHH
Q 006010          441 SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-------VVAYSSM  513 (664)
Q Consensus       441 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l  513 (664)
                      ..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++...  .|+       ..++..+
T Consensus       342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l  418 (514)
T 2gw1_A          342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGK  418 (514)
T ss_dssp             HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHH
Confidence            888888889999999999998888765 456678888888899999999999999888764  222       2378888


Q ss_pred             HHHHHH---cCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010          514 IHGLCN---AGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF  585 (664)
Q Consensus       514 ~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  585 (664)
                      +..+..   .|++++|...+++++...+.   +...+..+...|.+.|++++|...++++.+  ..|+.......
T Consensus       419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~  488 (514)
T 2gw1_A          419 ATLLTRNPTVENFIEATNLLEKASKLDPR---SEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKLQA  488 (514)
T ss_dssp             HHHHHTSCCTTHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHH
T ss_pred             HHHHhhhhhcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHHHHH
Confidence            888988   89999999999998765543   567788888999999999999999999988  56766544333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.1e-24  Score=227.83  Aligned_cols=450  Identities=10%  Similarity=0.017  Sum_probs=296.3

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHH
Q 006010          155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLM  234 (664)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  234 (664)
                      ..+...+..+.+.|++++|+..|+++++     ..|+..++..+..++.+.|++++|++.++++.+.+ +.+..++..+.
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~   80 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALE-----LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA   80 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHh-----cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence            4455555666666666666666666655     22455566666666666666666666666665543 34455666666


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006010          235 DGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLD  314 (664)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~  314 (664)
                      .++.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-...........
T Consensus        81 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (514)
T 2gw1_A           81 SANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP  159 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence            66666666666666666666543 22333333333333332222233222222221111111111111111111111111


Q ss_pred             HHHHHHHHHHHCCC---------CCChhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----c--CC------CCCHHH
Q 006010          315 KAVSLLDRMVASKC---------MPNEVTYGTIINGLVK---LGRAVDGARVLMSMEE-----R--KF------HVNEYI  369 (664)
Q Consensus       315 ~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~  369 (664)
                      ....+...+.....         +.+...+......+..   .|++++|...++++.+     .  .+      +.+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (514)
T 2gw1_A          160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS  239 (514)
T ss_dssp             CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence            11111111111110         1224444455555554   8999999999999887     3  11      224567


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006010          370 YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFE  449 (664)
Q Consensus       370 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  449 (664)
                      +..+...+...|++++|+..++++.+....  ...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus       240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  316 (514)
T 2gw1_A          240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI  316 (514)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence            888889999999999999999999987543  8888889999999999999999999999875 5577889999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHH
Q 006010          450 SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKL  529 (664)
Q Consensus       450 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  529 (664)
                      .|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...
T Consensus       317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  394 (514)
T 2gw1_A          317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ  394 (514)
T ss_dssp             TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999876 4567788999999999999999999999998753 33567888999999999999999999


Q ss_pred             HHHhhhcCCCCCCC---HhHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHhhhhhccCCCCchhh
Q 006010          530 FNEMLCLEPKSQPD---VFTYNILLNALCK---QSNISHSIDLLNSMMDRGCDPDLV-TCNIFLTALKEKLEAPQDGTDF  602 (664)
Q Consensus       530 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~  602 (664)
                      +++++...+.....   ...|..+...+..   .|++++|...++++.+  ..|+.. .+..+..               
T Consensus       395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~---------------  457 (514)
T 2gw1_A          395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIGLAQ---------------  457 (514)
T ss_dssp             HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHHHHH---------------
T ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH---------------
Confidence            99997654432111   3378889999999   9999999999999997  345543 3333333               


Q ss_pred             hHHHHHHhhhcCCcchHHHHHHHHHHcCCCCC-hHHHHHH
Q 006010          603 LNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQ-TSTWERV  641 (664)
Q Consensus       603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l  641 (664)
                            ++.+.|++++|.+.++++.+.  .|+ +..+..+
T Consensus       458 ------~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~  489 (514)
T 2gw1_A          458 ------MKLQQEDIDEAITLFEESADL--ARTMEEKLQAI  489 (514)
T ss_dssp             ------HHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHHH
T ss_pred             ------HHHHhcCHHHHHHHHHHHHHh--ccccHHHHHHH
Confidence                  399999999999999999985  444 4444433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.93  E-value=2.2e-23  Score=219.31  Aligned_cols=259  Identities=11%  Similarity=0.064  Sum_probs=178.0

Q ss_pred             CChHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006010          311 GNLDKAVSLLDRMVASKCMPNE-------VTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKA  383 (664)
Q Consensus       311 g~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  383 (664)
                      |++++|..+++++.+.. +.+.       .++..+...+...|++++|...+.++.+..+  +...+..+...+...|++
T Consensus       216 ~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~  292 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENS  292 (537)
T ss_dssp             HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCH
Confidence            35666666666666542 1121       2344555666667777777777777776543  356666777777777777


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010          384 EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDM  463 (664)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  463 (664)
                      ++|+..++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+
T Consensus       293 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  370 (537)
T 3fp2_A          293 QEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET  370 (537)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777777777776543 256677777777777888888888888777754 445667777778888888888888888887


Q ss_pred             HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-----CcCHHhHHHHHHHHHHc----------CCHHHHHH
Q 006010          464 AKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-----KPDVVAYSSMIHGLCNA----------GSVEEALK  528 (664)
Q Consensus       464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~  528 (664)
                      .+.. +.+...+..+...+...|++++|...++++++...     ......+......+...          |++++|..
T Consensus       371 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~  449 (537)
T 3fp2_A          371 KLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK  449 (537)
T ss_dssp             HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred             HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence            7765 45566777788888888888888888888765421     01112234445666677          88888888


Q ss_pred             HHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010          529 LFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  580 (664)
                      .|++++...+.   +...|..+..+|.+.|++++|...++++.+  +.|+..
T Consensus       450 ~~~~a~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~  496 (537)
T 3fp2_A          450 LLTKACELDPR---SEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMD  496 (537)
T ss_dssp             HHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--CH
T ss_pred             HHHHHHHhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcH
Confidence            88888765544   567788888888888888899888888887  445443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=1.8e-22  Score=207.14  Aligned_cols=397  Identities=12%  Similarity=0.091  Sum_probs=264.6

Q ss_pred             HHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          212 IQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK  291 (664)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  291 (664)
                      ...+.++.... +.+...+..+...+.+.|++++|+.+|+++.... +.+..+|..+..++...|++++|...|+++...
T Consensus        12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            33444444443 5567788888888999999999999999887653 346788888888899999999999999988877


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 006010          292 GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNE---VTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEY  368 (664)
Q Consensus       292 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  368 (664)
                      +. .+..++..+...+...|++++|.+.|+++.+.. +.+.   ..+..+...+..                       .
T Consensus        90 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~  144 (450)
T 2y4t_A           90 KM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------Q  144 (450)
T ss_dssp             CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------H
T ss_pred             CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------H
Confidence            43 357788888888888999999999998888753 2223   445544433111                       1


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006010          369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFF  448 (664)
Q Consensus       369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  448 (664)
                      .+..+...+.+.|++++|+..++++.+... .+..++..++.+|...|++++|...|+++.+.. +.+..++..+...|.
T Consensus       145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  222 (450)
T 2y4t_A          145 RLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYY  222 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            122334456667777777777777766532 256666777777777777777777777776653 445677777777777


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHcCCChHHHHHHHHHHHhCCCCcC-----HHhHH
Q 006010          449 ESGKGHKAVEIWKDMAKNNCVYNEVCYSVL------------IHGLCEDGKLREARMVWTQMLSRGCKPD-----VVAYS  511 (664)
Q Consensus       449 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~  511 (664)
                      ..|++++|...++.+.... +.+...+..+            +..+...|++++|...|+++++.  .|+     ...+.
T Consensus       223 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~  299 (450)
T 2y4t_A          223 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKE  299 (450)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHH
Confidence            7777777777777776654 3334444433            77888889999999999988874  344     34678


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhh
Q 006010          512 SMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKE  591 (664)
Q Consensus       512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~  591 (664)
                      .++.++.+.|++++|+..+++++...+.   +...|..+..+|...|++++|...++++.+  +.|+.......+..+..
T Consensus       300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~  374 (450)
T 2y4t_A          300 RICHCFSKDEKPVEAIRVCSEVLQMEPD---NVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQR  374 (450)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHH
Confidence            8888889999999999999998655443   677888899999999999999999999987  66765544444432211


Q ss_pred             hccCCCCchhhhHHHHHHhhhcC-----CcchHHHHHHH-HHHcCCCCC----h-------HHHHHHHHHhcccchHHHH
Q 006010          592 KLEAPQDGTDFLNELAIRLFKRQ-----RTSGGFKIVEV-MLQKFLSPQ----T-------STWERVVQELCRPKRIQAA  654 (664)
Q Consensus       592 ~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~-~~~~~~~~~----~-------~~~~~l~~~~~~~g~~~~A  654 (664)
                      ..... ...       ..|...|     +.+++.+.+++ ..+.  .|+    .       ..+..+..+|-..|+.+++
T Consensus       375 ~~~~~-~~~-------~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          375 LLKQS-QKR-------DYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             HHHHH-HSC-------CSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             Hhhcc-cch-------hHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            10000 000       0133344     55677888887 4443  232    2       2566677777777766554


Q ss_pred             H
Q 006010          655 I  655 (664)
Q Consensus       655 ~  655 (664)
                      .
T Consensus       445 ~  445 (450)
T 2y4t_A          445 K  445 (450)
T ss_dssp             -
T ss_pred             H
Confidence            4

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=2.6e-22  Score=205.99  Aligned_cols=329  Identities=11%  Similarity=0.053  Sum_probs=187.6

Q ss_pred             HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHh
Q 006010          137 AIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFR  216 (664)
Q Consensus       137 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~  216 (664)
                      +...+..++..  .+.++..+..++..+.+.|++++|..+|+++.+.    .+.+..++..+..++...|++++|.+.|+
T Consensus        11 ~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~   84 (450)
T 2y4t_A           11 VDLGTENLYFQ--SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLT   84 (450)
T ss_dssp             --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccc--cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            33344444332  4566778888888888888888898888888772    22356778888888888888888888888


Q ss_pred             hcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006010          217 EMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTP---VTFNVLINGLCKNGELGRAAKLVDNMFLKGC  293 (664)
Q Consensus       217 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~  293 (664)
                      ++.+.+ +.+..++..+..+|.+.|++++|...|+++.... +.+.   ..+..++..+...                  
T Consensus        85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~------------------  144 (450)
T 2y4t_A           85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ------------------  144 (450)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH------------------
T ss_pred             HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH------------------
Confidence            887765 5567788888888888888888888888887753 2233   5555554431100                  


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006010          294 LPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTL  373 (664)
Q Consensus       294 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  373 (664)
                           .+..+...+...|++++|...++++.+.. +.+...+..+..+|...|++++|.+.++++.+.... +..++..+
T Consensus       145 -----~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l  217 (450)
T 2y4t_A          145 -----RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKI  217 (450)
T ss_dssp             -----HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHH
T ss_pred             -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence                 11112223334444444444444444432 223444444444444555555555555444443221 34444455


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH------------HHHHHHhcCChhHHHHHHHHHHHCCCCCC----H
Q 006010          374 ISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSA------------LIDGLCRVGKPDEAEEILFEMINNGCAAN----A  437 (664)
Q Consensus       374 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~  437 (664)
                      +.+|...|++++|+..|+++.+.... +...+..            +...+...|++++|...|+++++.. +.+    .
T Consensus       218 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~  295 (450)
T 2y4t_A          218 STLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTV  295 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHH
Confidence            55555555555555555555443211 2222222            2555666666666666666666542 112    2


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 006010          438 FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR  501 (664)
Q Consensus       438 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  501 (664)
                      ..+..+...+.+.|++++|...++.+.+.. +.+...|..++.+|...|++++|...++++++.
T Consensus       296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          296 RSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            355556666666666666666666665543 345566666666666666666666666666653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.93  E-value=2e-22  Score=211.99  Aligned_cols=434  Identities=12%  Similarity=0.012  Sum_probs=328.5

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL  161 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  161 (664)
                      ....+..+...+.+.|++++|...|+.+....+ .+..++..++.+|...|++++|++.|+++++.  .+.+..++..++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la  100 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHH
Confidence            346788899999999999999999999998774 47889999999999999999999999999876  456788999999


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC------CCCCHHHHHHHHH
Q 006010          162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRN------CEPDIYTYCTLMD  235 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~  235 (664)
                      ..+...|++++|...|+ ...     ..|+.  ....+..+...+....|...++.+....      ..|+..    .+.
T Consensus       101 ~~~~~~g~~~~A~~~~~-~~~-----~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~  168 (537)
T 3fp2_A          101 SANESLGNFTDAMFDLS-VLS-----LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLA  168 (537)
T ss_dssp             HHHHHHTCHHHHHHHHH-HHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHH
T ss_pred             HHHHHcCCHHHHHHHHH-HHh-----cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHH
Confidence            99999999999999997 433     22332  2223445556666788999998886541      123333    334


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH--------hcCChhHHHHHHHHHHHcCCCCC-------HHH
Q 006010          236 GLCKENRLDEAVLLLDEMQVDGCFPTPV-TFNVLINGLC--------KNGELGRAAKLVDNMFLKGCLPN-------EVT  299 (664)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~--------~~g~~~~a~~~~~~~~~~g~~p~-------~~~  299 (664)
                      .+....+.+.+...+......  .+... ....+...+.        ..|++++|..+++++...... +       ..+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~  245 (537)
T 3fp2_A          169 SFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALA  245 (537)
T ss_dssp             HHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHH
T ss_pred             HHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHH
Confidence            455556666555544333321  22222 2222322222        225789999999998876332 2       235


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010          300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK  379 (664)
Q Consensus       300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (664)
                      +..+...+...|++++|...++++.+.  .|+...+..+...+...|++++|...+.++.+..+. +..++..+...+..
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~  322 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFI  322 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHh
Confidence            667777888899999999999999986  455788888999999999999999999999887654 67889999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI  459 (664)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  459 (664)
                      .|++++|+..++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.
T Consensus       323 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  400 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ  400 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999987533 56788889999999999999999999999874 56778899999999999999999999


Q ss_pred             HHHHHHCCC-----CCCHHHHHHHHHHHHcC----------CChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHH
Q 006010          460 WKDMAKNNC-----VYNEVCYSVLIHGLCED----------GKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVE  524 (664)
Q Consensus       460 ~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  524 (664)
                      ++.+.+...     ......+......+...          |++++|...++++++.. +.+..++..++.+|...|+++
T Consensus       401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~  479 (537)
T 3fp2_A          401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKID  479 (537)
T ss_dssp             HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHH
Confidence            999876431     11222344455667777          99999999999999863 345788999999999999999


Q ss_pred             HHHHHHHHhhhcCCC
Q 006010          525 EALKLFNEMLCLEPK  539 (664)
Q Consensus       525 ~A~~~~~~~~~~~~~  539 (664)
                      +|...|++++...+.
T Consensus       480 ~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          480 EAIELFEDSAILART  494 (537)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999765543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=9.1e-19  Score=173.56  Aligned_cols=324  Identities=13%  Similarity=0.131  Sum_probs=234.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006010          226 DIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIH  305 (664)
Q Consensus       226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~  305 (664)
                      ++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++..... .+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence            35667777888888888888888888877653 33567777888888888888888888888777632 25677777888


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006010          306 GLCLKGNLDKAVSLLDRMVASKCMP----NEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEG  381 (664)
Q Consensus       306 ~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  381 (664)
                      .+...|++++|...++++.+..  |    +...+..+...+.                       ...+..+...+...|
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~  134 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA  134 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred             HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence            8888888888888888887653  3    2222222211100                       112233456677788


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006010          382 KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWK  461 (664)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  461 (664)
                      ++++|+..++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++
T Consensus       135 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  212 (359)
T 3ieg_A          135 DYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR  212 (359)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888888888777643 356677777778888888888888888887764 5567777888888888888888888888


Q ss_pred             HHHHCCCCCCHHHHH------------HHHHHHHcCCChHHHHHHHHHHHhCCCCcC-H----HhHHHHHHHHHHcCCHH
Q 006010          462 DMAKNNCVYNEVCYS------------VLIHGLCEDGKLREARMVWTQMLSRGCKPD-V----VAYSSMIHGLCNAGSVE  524 (664)
Q Consensus       462 ~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~  524 (664)
                      ...+.. +.+...+.            .+...+...|++++|...++++.+..  |+ .    ..+..+..++...|+++
T Consensus       213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~  289 (359)
T 3ieg_A          213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPV  289 (359)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHH
Confidence            877754 33333332            23666888999999999999988753  33 2    23556778899999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          525 EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFL  586 (664)
Q Consensus       525 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll  586 (664)
                      +|...+++++...+.   +...|..+...+...|++++|...++++.+  +.|+.......+
T Consensus       290 ~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l  346 (359)
T 3ieg_A          290 EAIRICSEVLQMEPD---NVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGL  346 (359)
T ss_dssp             HHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHH
Confidence            999999999765443   677888999999999999999999999997  567755443333

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=8.1e-19  Score=173.94  Aligned_cols=332  Identities=12%  Similarity=0.041  Sum_probs=222.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006010          191 NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLIN  270 (664)
Q Consensus       191 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  270 (664)
                      +...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            45678888999999999999999999998875 5678899999999999999999999999998764 336788999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 006010          271 GLCKNGELGRAAKLVDNMFLKGCL--PNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRA  348 (664)
Q Consensus       271 ~~~~~g~~~~a~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  348 (664)
                      .+...|++++|...++++......  .+...+..+.....                       ...+..+...+...|++
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence            999999999999999999876320  13334433321100                       00122233344445555


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          349 VDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEM  428 (664)
Q Consensus       349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  428 (664)
                      ++|.+.++++.+..+. +...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+
T Consensus       137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5555555555444322 34445555555555555555555555555442 224445555555555555555555555555


Q ss_pred             HHCCCCCCHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCChHHHH
Q 006010          429 INNGCAANAFTY------------SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNE----VCYSVLIHGLCEDGKLREAR  492 (664)
Q Consensus       429 ~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~  492 (664)
                      .+.. +.+...+            ..+...+...|++++|.+.++.+.+.. +.+.    ..+..+...+...|++++|.
T Consensus       215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~  292 (359)
T 3ieg_A          215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI  292 (359)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence            5432 2222222            233566788888888888888888765 2233    23445777888899999999


Q ss_pred             HHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHH
Q 006010          493 MVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC  555 (664)
Q Consensus       493 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  555 (664)
                      ..++++++.. +.+..++..++..+...|++++|...|+++++..|+   +...+..+..+..
T Consensus       293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~  351 (359)
T 3ieg_A          293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN---DQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHH
Confidence            9999888753 336778888899999999999999999999754443   4555655555543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.87  E-value=1.4e-17  Score=172.21  Aligned_cols=351  Identities=11%  Similarity=0.013  Sum_probs=197.1

Q ss_pred             CHHHHHHHHHHHHh----cCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCH
Q 006010          191 NTLTFNLVIKTVCR----LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK----ENRLDEAVLLLDEMQVDGCFPTP  262 (664)
Q Consensus       191 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~  262 (664)
                      +...+..+...|..    .+++++|...|+...+.|   +...+..|...|..    .+++++|.+.|++..+.|   ++
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            44555555555655    566666666666665544   45556666666666    666666666666666543   44


Q ss_pred             HHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhh
Q 006010          263 VTFNVLINGLCK----NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL----KGNLDKAVSLLDRMVASKCMPNEVT  334 (664)
Q Consensus       263 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~  334 (664)
                      ..+..|...|..    .+++++|...|++....|   +...+..+...|..    .++.++|.+.|++..+.|   +...
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a  185 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS  185 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            555556666655    556666666666665554   44455555555554    556666666666666553   4555


Q ss_pred             HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006010          335 YGTIINGLVK----LGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK----EGKAEDAMKLWKQMMEKGCKPNTVVYS  406 (664)
Q Consensus       335 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  406 (664)
                      +..+...|..    .++.++|.+++.+..+.+   +...+..+...|..    .+++++|+..|++..+.|   +...+.
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~  259 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF  259 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            5555555555    566666666666655543   34455555555554    556666666666655543   334444


Q ss_pred             HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006010          407 ALIDGLCR----VGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES-----GKGHKAVEIWKDMAKNNCVYNEVCYSV  477 (664)
Q Consensus       407 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~  477 (664)
                      .+...+..    .+++++|...|++..+.+   +...+..+...|...     ++.++|...+++..+.+   +...+..
T Consensus       260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~  333 (490)
T 2xm6_A          260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN  333 (490)
T ss_dssp             HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence            45555554    556666666666665543   344445555555554     55666666666555543   3344444


Q ss_pred             HHHHHHcCC---ChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----cCCHHHHHHHHHHhhhcCCCCCCCHhHHHHH
Q 006010          478 LIHGLCEDG---KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----AGSVEEALKLFNEMLCLEPKSQPDVFTYNIL  550 (664)
Q Consensus       478 l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  550 (664)
                      +...|...|   +.++|.+.|++..+.|   +...+..+...|..    .+++++|..+|+++..  .+   +...+..+
T Consensus       334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~---~~~a~~~L  405 (490)
T 2xm6_A          334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE--QG---LSAAQVQL  405 (490)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHH
T ss_pred             HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh--CC---CHHHHHHH
Confidence            555554444   4555666666555542   34455555555555    5556666666665532  22   34455555


Q ss_pred             HHHHHH----cCChhHHHHHHHHHHHC
Q 006010          551 LNALCK----QSNISHSIDLLNSMMDR  573 (664)
Q Consensus       551 ~~~~~~----~g~~~~A~~~~~~~~~~  573 (664)
                      ...|..    .+++++|..+|++..+.
T Consensus       406 g~~y~~g~g~~~d~~~A~~~~~~A~~~  432 (490)
T 2xm6_A          406 GEIYYYGLGVERDYVQAWAWFDTASTN  432 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            555555    55666666666665553

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.87  E-value=2.9e-17  Score=169.80  Aligned_cols=365  Identities=12%  Similarity=0.032  Sum_probs=311.8

Q ss_pred             HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHh----cC
Q 006010          135 EEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ----EGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCR----LG  206 (664)
Q Consensus       135 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g  206 (664)
                      ..+++.+....+    ..++.++..+...|..    .+++++|...|++..+   .+   +...+..+...|..    .+
T Consensus        24 ~~~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~---~~---~~~a~~~Lg~~y~~g~g~~~   93 (490)
T 2xm6_A           24 NVNLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE---QG---YTPAEYVLGLRYMNGEGVPQ   93 (490)
T ss_dssp             -CCHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             hHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHcCCCCCC
Confidence            334566666533    5688999999999998    8999999999999987   32   56778888889988    89


Q ss_pred             ChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCh
Q 006010          207 LVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK----ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK----NGEL  278 (664)
Q Consensus       207 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~  278 (664)
                      ++++|.+.|++..+.|   +...+..|...|..    .+++++|...|++..+.|   ++..+..|...|..    .+++
T Consensus        94 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~  167 (490)
T 2xm6_A           94 DYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY  167 (490)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence            9999999999998876   67888889999988    889999999999998875   67788888888887    7899


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChhH
Q 006010          279 GRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL----KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVK----LGRAVD  350 (664)
Q Consensus       279 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~  350 (664)
                      ++|.+.|++..+.|   +...+..+...|..    .++.++|.++|++..+.|   +...+..+...|..    .++.++
T Consensus       168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~  241 (490)
T 2xm6_A          168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ  241 (490)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence            99999999998875   67888888888887    899999999999999875   67788888888886    789999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChhHH
Q 006010          351 GARVLMSMEERKFHVNEYIYSTLISGLFK----EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRV-----GKPDEA  421 (664)
Q Consensus       351 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a  421 (664)
                      |.+++++..+.+   +...+..+...|..    .++.++|+..|++..+.|   +...+..+...|...     +++++|
T Consensus       242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A  315 (490)
T 2xm6_A          242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA  315 (490)
T ss_dssp             HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence            999999998864   55677778888887    899999999999998765   566777788888877     899999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHH
Q 006010          422 EEILFEMINNGCAANAFTYSSLMKGFFESG---KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE----DGKLREARMV  494 (664)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~  494 (664)
                      ...|++..+.+   +...+..+...|...|   +.++|.+.+++..+.+   +...+..+...|..    .+++++|...
T Consensus       316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  389 (490)
T 2xm6_A          316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIW  389 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            99999999876   5677788888887766   7899999999999864   67788888988988    8999999999


Q ss_pred             HHHHHhCCCCcCHHhHHHHHHHHHH----cCCHHHHHHHHHHhhhc
Q 006010          495 WTQMLSRGCKPDVVAYSSMIHGLCN----AGSVEEALKLFNEMLCL  536 (664)
Q Consensus       495 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~  536 (664)
                      |++..+.+   +...+..+...|..    .+++++|...|++++..
T Consensus       390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  432 (490)
T 2xm6_A          390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN  432 (490)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            99999865   56788889999988    89999999999999653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.86  E-value=2.5e-16  Score=169.64  Aligned_cols=419  Identities=11%  Similarity=0.105  Sum_probs=274.7

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRV--VLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNS  159 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  159 (664)
                      +|+--...++.|...|++.+|..+++.+.-.+.+  .+...-+.++.+..+. +..+..+...+.-     .-+   ...
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-----~~d---~~e 1054 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-----NYD---APD 1054 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-----hcc---HHH
Confidence            3333344455666666666666666666633211  2223333344444443 2233333333321     011   233


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010          160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK  239 (664)
Q Consensus       160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  239 (664)
                      ++..+...|.+++|..+|++...        .....+.++   -..|++++|.++.++..      +..+|..+..++..
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~--------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDV--------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCC--------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHh
Confidence            56667777888888888887522        122222222   26677888888877553      46678888888888


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSL  319 (664)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~  319 (664)
                      .|++++|++.|.+.      .|...|..++..+.+.|++++|.+.+...++..  ++....+.++.+|++.+++++...+
T Consensus      1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A         1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred             CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence            88888888888654      366777788888888888888888888776653  2333334577788888777753333


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006010          320 LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK  399 (664)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  399 (664)
                          ++   .++...|..+...|...|++++|...|..+         ..|..++.++++.|++++|++.+++..     
T Consensus      1190 ----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A         1190 ----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred             ----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence                22   345566777888888888888888888774         367888888888888888888887762     


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI  479 (664)
Q Consensus       400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  479 (664)
                       +..+|..+..+|...|++..|......+     ..++..+..++..|.+.|.+++|+.+++...... +.+...|+.+.
T Consensus      1249 -n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A         1249 -STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred             -CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence             5678888888888888888887766542     3356677788889999999999999998887665 45566777777


Q ss_pred             HHHHcC--CChHHHHHHHHHHHhCCCCc------CHHhHHHHHHHHHHcCCHHHHHHH-------------HHHhhhcCC
Q 006010          480 HGLCED--GKLREARMVWTQMLSRGCKP------DVVAYSSMIHGLCNAGSVEEALKL-------------FNEMLCLEP  538 (664)
Q Consensus       480 ~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~  538 (664)
                      ..+++.  ++..++.+.|..-..  ++|      +...|..+...|.+.|+++.|...             |...+    
T Consensus      1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i---- 1395 (1630)
T 1xi4_A         1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII---- 1395 (1630)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh----
Confidence            777654  355556666554332  222      456788888889999999988832             22221    


Q ss_pred             CCCCCHhHHHHHHHHHHHcC---------------ChhHHHHHHH
Q 006010          539 KSQPDVFTYNILLNALCKQS---------------NISHSIDLLN  568 (664)
Q Consensus       539 ~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~  568 (664)
                      ....|...|...+..|...+               +.+++.+++.
T Consensus      1396 ~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1396 TKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             cccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            12346777777777777666               6666666665

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.86  E-value=3.7e-16  Score=168.29  Aligned_cols=397  Identities=14%  Similarity=0.110  Sum_probs=298.9

Q ss_pred             cCCChhHHHHHHhhCCCCCC-CCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 006010           59 AKSEQPFSDEIFNSTPKLGS-YQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEA  137 (664)
Q Consensus        59 ~~~~~~~a~~~f~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  137 (664)
                      ...++..++..++.+...++ |.-+....+.++....+. +........+++-+..       ...++..+...|.+++|
T Consensus       997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A          997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEA 1068 (1630)
T ss_pred             hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHH
Confidence            35667788888888765443 555666667677777666 5566666666555222       33477888899999999


Q ss_pred             HHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhh
Q 006010          138 IRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFRE  217 (664)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~  217 (664)
                      ..+|++.      .......+.++.   ..+++++|.++++++.         +..+|..+..++...|++++|+..|.+
T Consensus      1069 f~IYkKa------~~~~~A~~VLie---~i~nldrAiE~Aervn---------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A         1069 FAIFRKF------DVNTSAVQVLIE---HIGNLDRAYEFAERCN---------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred             HHHHHHc------CCHHHHHHHHHH---HHhhHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            9999986      122333344433   6789999999998762         456888999999999999999999966


Q ss_pred             cccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 006010          218 MPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNE  297 (664)
Q Consensus       218 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~  297 (664)
                      .      .|...|..++..+.+.|++++|.+.+....+..  +++...+.++.+|++.+++++.....    .   .++.
T Consensus      1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A         1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred             c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence            4      377889999999999999999999999887754  44444556899999999988644442    2   3466


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006010          298 VTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGL  377 (664)
Q Consensus       298 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  377 (664)
                      ..|..+...|...|++++|..+|..+         ..|..+..++++.|++++|.+.+.+..      +..+|..+..+|
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~ac 1260 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFAC 1260 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHH
Confidence            77778999999999999999999985         379999999999999999999998772      678999999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChHH
Q 006010          378 FKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES--GKGHK  455 (664)
Q Consensus       378 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~  455 (664)
                      ...|++..|......+     ..+...+..++..|.+.|.+++|+.+++..+... +.....|+.+...|++.  ++..+
T Consensus      1261 ve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A         1261 VDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred             hhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence            9999999998876643     2366677789999999999999999999998765 45566777777777664  34445


Q ss_pred             HHHHHHHHHHCCCC------CCHHHHHHHHHHHHcCCChHHHHHH-------------HHHHHhCCCCcCHHhHHHHHHH
Q 006010          456 AVEIWKDMAKNNCV------YNEVCYSVLIHGLCEDGKLREARMV-------------WTQMLSRGCKPDVVAYSSMIHG  516 (664)
Q Consensus       456 a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~p~~~~~~~l~~~  516 (664)
                      +.+.|..-..  ++      .+...|..++..|.+.|+++.|...             |.+.+..  ..+...|...+..
T Consensus      1335 hlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~F 1410 (1630)
T 1xi4_A         1335 HLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQF 1410 (1630)
T ss_pred             HHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHH
Confidence            5555543322  22      2566799999999999999999832             2222222  3466777777777


Q ss_pred             HHHcC
Q 006010          517 LCNAG  521 (664)
Q Consensus       517 ~~~~g  521 (664)
                      |...+
T Consensus      1411 yl~~~ 1415 (1630)
T 1xi4_A         1411 YLEFK 1415 (1630)
T ss_pred             HHhhC
Confidence            77444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=1.9e-17  Score=173.02  Aligned_cols=218  Identities=12%  Similarity=0.035  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010          350 DGARVLMSMEERKFHVNEYIYSTLISGLFK-------EGKAE-------DAMKLWKQMMEKGCKPNTVVYSALIDGLCRV  415 (664)
Q Consensus       350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  415 (664)
                      .+..+|+++....+. +...|..++..+.+       .|+++       +|..++++..+.-.+.+...|..++..+.+.
T Consensus       256 ~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            555667766665332 56667766666654       57766       7888888887521233567777788888888


Q ss_pred             CChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcCCChHHHHH
Q 006010          416 GKPDEAEEILFEMINNGCAANA-FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG-LCEDGKLREARM  493 (664)
Q Consensus       416 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~  493 (664)
                      |++++|..+|+++++.. +.+. ..|..++..+.+.|+.++|.++|++..+.. +.+...|...+.. +...|+.++|..
T Consensus       335 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~  412 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  412 (530)
T ss_dssp             TCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             CCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHH
Confidence            88888888888888753 2233 477888888888888888888888888754 2233333322222 335889999999


Q ss_pred             HHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          494 VWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP--DVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       494 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      +|+..++.. +.+...|..++..+.+.|+.++|..+|++++...+. .|  ....|...+......|+.+.+..+.+++.
T Consensus       413 ~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~-~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~  490 (530)
T 2ooe_A          413 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL-PPEKSGEIWARFLAFESNIGDLASILKVEKRRF  490 (530)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS-CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999888752 234678888888888899999999999998754332 22  24478888888888899999999999888


Q ss_pred             H
Q 006010          572 D  572 (664)
Q Consensus       572 ~  572 (664)
                      +
T Consensus       491 ~  491 (530)
T 2ooe_A          491 T  491 (530)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=3e-17  Score=171.48  Aligned_cols=416  Identities=10%  Similarity=0.079  Sum_probs=273.2

Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhccc
Q 006010          106 LYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKH  185 (664)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  185 (664)
                      +++.++.+ |.+..+|..++.. .+.|++++|..+|+++++.  .|.+...|...+..+.+.|++++|..+|++++.   
T Consensus         2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---   74 (530)
T 2ooe_A            2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---   74 (530)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---
T ss_pred             hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Confidence            45566555 4477889888884 7789999999999999775  566788999999999999999999999999987   


Q ss_pred             CCCCcCHHHHHHHHHHH-HhcCChhHHHH----HHhhcccC-CCC-CCHHHHHHHHHHHHh---------cCChhHHHHH
Q 006010          186 MNILPNTLTFNLVIKTV-CRLGLVDNAIQ----LFREMPVR-NCE-PDIYTYCTLMDGLCK---------ENRLDEAVLL  249 (664)
Q Consensus       186 ~~~~~~~~~~~~ll~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~  249 (664)
                        ..|+...|...+... ...|+.+.|.+    +|+..... |.. ++...|...+....+         .|+++.|..+
T Consensus        75 --~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~  152 (530)
T 2ooe_A           75 --KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV  152 (530)
T ss_dssp             --TCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred             --cCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence              346777777766533 34677777665    66665432 433 356778877776654         6788899999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHH-------------hcCChhHHHHHHHHHH------HcC---CCCC--------HHH
Q 006010          250 LDEMQVDGCFPTPVTFNVLINGLC-------------KNGELGRAAKLVDNMF------LKG---CLPN--------EVT  299 (664)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~li~~~~-------------~~g~~~~a~~~~~~~~------~~g---~~p~--------~~~  299 (664)
                      |++............|........             ..+++..|..++....      +..   +.|+        ...
T Consensus       153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~  232 (530)
T 2ooe_A          153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM  232 (530)
T ss_dssp             HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred             HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence            998887311111234443333211             2345666666665521      111   2333        134


Q ss_pred             HHHHHHHHHhc----CCh----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------cCChh-------HHHHHHHH
Q 006010          300 YNTLIHGLCLK----GNL----DKAVSLLDRMVASKCMPNEVTYGTIINGLVK-------LGRAV-------DGARVLMS  357 (664)
Q Consensus       300 ~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~  357 (664)
                      |...+......    ++.    +.+..+|++++... +.++..|..++..+.+       .|+++       +|..++++
T Consensus       233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~  311 (530)
T 2ooe_A          233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER  311 (530)
T ss_dssp             HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence            44444332221    122    35667777777652 4466677777776664       57766       77778877


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006010          358 MEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN--TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA  435 (664)
Q Consensus       358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  435 (664)
                      ..+.-.+.+...|..++..+.+.|++++|..+|+++.+.  .|+  ...|..++..+.+.|++++|..+|+++++.. +.
T Consensus       312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~  388 (530)
T 2ooe_A          312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RT  388 (530)
T ss_dssp             HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TC
T ss_pred             HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence            775222335677777777777888888888888887775  333  2467777777777788888888888887753 22


Q ss_pred             CHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CcC--HHhHH
Q 006010          436 NAFTYSSLMKG-FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-KPD--VVAYS  511 (664)
Q Consensus       436 ~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~  511 (664)
                      +...+...+.. +...|+.++|..+|+...+.. +.+...|..++..+...|+.++|..+|++.+..+. .|+  ...|.
T Consensus       389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~  467 (530)
T 2ooe_A          389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA  467 (530)
T ss_dssp             CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH
T ss_pred             chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH
Confidence            23333222222 335778888888888777654 44567777777777788888888888888776531 222  34676


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhh
Q 006010          512 SMIHGLCNAGSVEEALKLFNEMLC  535 (664)
Q Consensus       512 ~l~~~~~~~g~~~~A~~~~~~~~~  535 (664)
                      ..+......|+.+.+..++.++++
T Consensus       468 ~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          468 RFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777777777888888888877754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.85  E-value=2e-18  Score=168.96  Aligned_cols=295  Identities=12%  Similarity=-0.039  Sum_probs=187.8

Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006010          329 MPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSAL  408 (664)
Q Consensus       329 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  408 (664)
                      +.+...+..++..+...|++++|.++++++.+..+. +...+..++.++...|++++|...++++.+... .+...+..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence            344555566666666666666666666666655433 344555556666666777777777777666532 245566666


Q ss_pred             HHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 006010          409 IDGLCRVG-KPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGK  487 (664)
Q Consensus       409 i~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  487 (664)
                      ...+...| ++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence            66677777 6777777777776654 4455666777777777777777777777776654 3345556667777777777


Q ss_pred             hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCC------CCCCHhHHHHHHHHHHHcCChh
Q 006010          488 LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK------SQPDVFTYNILLNALCKQSNIS  561 (664)
Q Consensus       488 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~  561 (664)
                      +++|...++++.+.. +.+..++..++..+...|++++|...+++++...+.      ...+...|..+..++...|+++
T Consensus       175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            777777777777653 334566777777777777777777777777543211      0223456777777777778888


Q ss_pred             HHHHHHHHHHHCCCCCCH-HHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHH
Q 006010          562 HSIDLLNSMMDRGCDPDL-VTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWER  640 (664)
Q Consensus       562 ~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  640 (664)
                      +|...++++.+.  .|+. ..+..+.                     .++.+.|++++|.+.++++.+. .+.++..+..
T Consensus       254 ~A~~~~~~a~~~--~~~~~~~~~~la---------------------~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~  309 (330)
T 3hym_B          254 EALDYHRQALVL--IPQNASTYSAIG---------------------YIHSLMGNFENAVDYFHTALGL-RRDDTFSVTM  309 (330)
T ss_dssp             HHHHHHHHHHHH--STTCSHHHHHHH---------------------HHHHHHTCHHHHHHHHHTTTTT-CSCCHHHHHH
T ss_pred             HHHHHHHHHHhh--CccchHHHHHHH---------------------HHHHHhccHHHHHHHHHHHHcc-CCCchHHHHH
Confidence            888888777763  3432 2232222                     2377778888888888777663 2335667777


Q ss_pred             HHHHh-cccchHH
Q 006010          641 VVQEL-CRPKRIQ  652 (664)
Q Consensus       641 l~~~~-~~~g~~~  652 (664)
                      ++.++ ...|+.+
T Consensus       310 l~~~~~~~~g~~~  322 (330)
T 3hym_B          310 LGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHTTTTC--
T ss_pred             HHHHHHHHhCchh
Confidence            77766 4555543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=2.5e-18  Score=168.21  Aligned_cols=274  Identities=12%  Similarity=0.041  Sum_probs=160.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006010          297 EVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISG  376 (664)
Q Consensus       297 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  376 (664)
                      ...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|...+.++.+..+. +...+..+...
T Consensus        22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~   99 (330)
T 3hym_B           22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCY   99 (330)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHH
Confidence            3344445555555555555555555555442 223344444555555555555555555555554322 34455555555


Q ss_pred             HHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006010          377 LFKEG-KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHK  455 (664)
Q Consensus       377 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  455 (664)
                      +...| ++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B          100 YLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence            56666 56666666666555432 234455556666666666666666666666543 3334455556666666666666


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC--------CCcCHHhHHHHHHHHHHcCCHHHHH
Q 006010          456 AVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG--------CKPDVVAYSSMIHGLCNAGSVEEAL  527 (664)
Q Consensus       456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~  527 (664)
                      |.+.++.+.+.. +.+...+..+...+...|++++|...++++.+..        .+....++..++.++...|++++|.
T Consensus       178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            666666666554 3455566666666666677777776666665431        0222456667777777777777777


Q ss_pred             HHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010          528 KLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  580 (664)
                      ..+++++...+.   +...|..+..++.+.|++++|...++++.+  +.|+..
T Consensus       257 ~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~  304 (330)
T 3hym_B          257 DYHRQALVLIPQ---NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDT  304 (330)
T ss_dssp             HHHHHHHHHSTT---CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCH
T ss_pred             HHHHHHHhhCcc---chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCch
Confidence            777777654433   455667777777777777777777777765  455443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=5.6e-18  Score=168.55  Aligned_cols=309  Identities=14%  Similarity=0.007  Sum_probs=187.0

Q ss_pred             HHhcCChhHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006010          237 LCKENRLDEAVL-LLDEMQVDGCF-P--TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGN  312 (664)
Q Consensus       237 ~~~~g~~~~a~~-~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~  312 (664)
                      +.-.|++++|.. .+++....... |  +...+..+...+...|++++|...|+++.... +.+..++..+...+...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            334455555555 44443322100 0  12334445555555555555555555555442 1244455555555555555


Q ss_pred             hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006010          313 LDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQ  392 (664)
Q Consensus       313 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  392 (664)
                      +++|...++++.+.. +.+..++..+...+...|++++|.+.++++....+. +...+..+...       ..       
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------  177 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------  177 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence            555555555555432 224444444555555555555555555554443221 11111000000       00       


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 006010          393 MMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA--NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVY  470 (664)
Q Consensus       393 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  470 (664)
                      .    ..+ ...+.. +..+...|++++|...++++.+.. +.  +..++..+...|...|++++|...++++.+.. +.
T Consensus       178 ~----~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~  249 (368)
T 1fch_A          178 G----AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN  249 (368)
T ss_dssp             -------------CT-THHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             h----hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence            0    000 000112 223337889999999999998864 33  57888999999999999999999999988865 55


Q ss_pred             CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC--------CC
Q 006010          471 NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS--------QP  542 (664)
Q Consensus       471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~  542 (664)
                      +...+..+...+...|++++|...++++++.. +.+..++..++.+|.+.|++++|...|++++...+..        ..
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  328 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM  328 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence            67889999999999999999999999998753 3457789999999999999999999999997655442        11


Q ss_pred             CHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          543 DVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      ....|..+..+|...|++++|..++++.+
T Consensus       329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          329 SENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence            26789999999999999999999887544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=5.2e-18  Score=168.79  Aligned_cols=304  Identities=11%  Similarity=-0.016  Sum_probs=128.0

Q ss_pred             CCHhHHHH-HHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010          168 GLYHRALE-FYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEA  246 (664)
Q Consensus       168 ~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  246 (664)
                      |++++|.. .|++.....+.....+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|
T Consensus        39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A  117 (368)
T 1fch_A           39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA  117 (368)
T ss_dssp             -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence            45555555 55544332111111122334455555555555555555555555443 33455555555555555555555


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010          247 VLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS  326 (664)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  326 (664)
                      ...++++.+.. +.+..++..+...+...|++++|...++++...... +...+..+..       ...       ..  
T Consensus       118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-------~~~-------~~--  179 (368)
T 1fch_A          118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE-------GAG-------GA--  179 (368)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------------------------
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH-------Hhh-------hh--
Confidence            55555555432 224455555555555555555555555555544211 1111110000       000       00  


Q ss_pred             CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006010          327 KCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV-NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVY  405 (664)
Q Consensus       327 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  405 (664)
                        .+ ...+..+. .+...|++++|...++++.+..+.. +..++..+...+.+.|++++|+..++++.+... .+..++
T Consensus       180 --~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~  254 (368)
T 1fch_A          180 --GL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLW  254 (368)
T ss_dssp             ---------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             --cc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHH
Confidence              00 00000111 1113444444444444444332211 234444444444444444444444444444321 133444


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----------CCHHHH
Q 006010          406 SALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCV----------YNEVCY  475 (664)
Q Consensus       406 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~  475 (664)
                      ..+...+...|++++|...++++++.. +.+...+..+...|.+.|++++|...++.+.+....          ....+|
T Consensus       255 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  333 (368)
T 1fch_A          255 NKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW  333 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence            444444445555555555555444432 333444445555555555555555555444432200          013455


Q ss_pred             HHHHHHHHcCCChHHHHHHHH
Q 006010          476 SVLIHGLCEDGKLREARMVWT  496 (664)
Q Consensus       476 ~~l~~~~~~~g~~~~A~~~~~  496 (664)
                      ..+..++...|++++|..++.
T Consensus       334 ~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          334 STLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHT
T ss_pred             HHHHHHHHHhCChHhHHHhHH
Confidence            555555555555555555544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.1e-16  Score=165.16  Aligned_cols=381  Identities=13%  Similarity=-0.019  Sum_probs=213.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C
Q 006010          226 DIYTYCTLMDGLCKENRLDEAVLLLDEMQVD--------GCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK-----G  292 (664)
Q Consensus       226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g  292 (664)
                      ....|+.|...+...|++++|++.|++..+.        .-+....+|+.+...|...|++++|...+++....     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            4567888888888999999999988876542        11234567888888888889999998888877542     1


Q ss_pred             C-C-CCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCC
Q 006010          293 C-L-PNEVTYNTLIHGLCL--KGNLDKAVSLLDRMVASKCMPNEVTYGTIING---LVKLGRAVDGARVLMSMEERKFHV  365 (664)
Q Consensus       293 ~-~-p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~  365 (664)
                      . . ....++.....++..  .+++++|.+.|++..+.. +-++..+..+...   +...++.++|++.+++..+..+. 
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-  207 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-  207 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence            0 1 123455555444443  456888888888887753 2244444444443   33456777788888777776543 


Q ss_pred             CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010          366 NEYIYSTLISGLFK----EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYS  441 (664)
Q Consensus       366 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  441 (664)
                      +...+..+...+..    .+++++|...+++...... .+..++..+...+...|++++|...++++.+.. +.+..++.
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  285 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC  285 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence            55555555544443    4567778888887776643 356677777788888888888888888887764 45566666


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC
Q 006010          442 SLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG  521 (664)
Q Consensus       442 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  521 (664)
                      .+...|...+....+...          .      .........+..++|...+++..+.. +.+..++..+...+...|
T Consensus       286 ~lg~~y~~~~~~~~~~~~----------~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~  348 (472)
T 4g1t_A          286 QIGCCYRAKVFQVMNLRE----------N------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD  348 (472)
T ss_dssp             HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhhHHH----------H------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence            666665432111000000          0      00000111223566777777776642 223456777778888888


Q ss_pred             CHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH-HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhh----hhccCC
Q 006010          522 SVEEALKLFNEMLCLEPKSQPDVFTYNILLNA-LCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALK----EKLEAP  596 (664)
Q Consensus       522 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~----~~~~~~  596 (664)
                      ++++|+..|+++++..+........+..+... ....|++++|+..+++.++  +.|+.......+..+.    ......
T Consensus       349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~~~l~~~~~~~l~~~  426 (472)
T 4g1t_A          349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKMKDKLQKIAKMRLSKN  426 (472)
T ss_dssp             CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHHHhC
Confidence            88888888888764332210001122233322 3456778888888888776  5665443322222211    000111


Q ss_pred             CCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          597 QDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       597 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      ......+..||.+|...|++++|.+.|+++++.
T Consensus       427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~  459 (472)
T 4g1t_A          427 GADSEALHVLAFLQELNEKMQQADEDSERGLES  459 (472)
T ss_dssp             C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            111223334455555566666666666665553

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.80  E-value=5.8e-18  Score=168.19  Aligned_cols=264  Identities=11%  Similarity=0.060  Sum_probs=173.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006010          370 YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFE  449 (664)
Q Consensus       370 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  449 (664)
                      +..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++++|...|+++++.. +.+...+..+...|..
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN  145 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence            44455555555555555555555554432 244555555555555555555555555555543 3345555556666666


Q ss_pred             cCChHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-cCHHhHHHHHHHHH
Q 006010          450 SGKGHKAVEIWKDMAKNNCVY----------NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCK-PDVVAYSSMIHGLC  518 (664)
Q Consensus       450 ~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~  518 (664)
                      .|++++|.+.++++.+.. +.          ....+..+...+...|++++|...++++++.... ++..++..++..+.
T Consensus       146 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH  224 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence            666666666666555532 11          1223344577888889999999999998876321 15778888999999


Q ss_pred             HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHhhhhhccCCC
Q 006010          519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL-VTCNIFLTALKEKLEAPQ  597 (664)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~  597 (664)
                      ..|++++|+..|++++...+.   +...|..+..+|...|++++|+..++++.+  ..|+. ..+..+...         
T Consensus       225 ~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~---------  290 (365)
T 4eqf_A          225 LSGEFNRAIDAFNAALTVRPE---DYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGIS---------  290 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH---------
T ss_pred             HCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHH---------
Confidence            999999999999999765554   677889999999999999999999999987  45553 334333333         


Q ss_pred             CchhhhHHHHHHhhhcCCcchHHHHHHHHHHcC--C-C--------CChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          598 DGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKF--L-S--------PQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       598 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                                  |.+.|++++|...++++.+..  . .        .+..+|..+..++...|+.+.|.+...+.+
T Consensus       291 ------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l  354 (365)
T 4eqf_A          291 ------------CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL  354 (365)
T ss_dssp             ------------HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred             ------------HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence                        889999999999999988751  0 0        136889999999999999999988776644

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.78  E-value=2.4e-17  Score=163.73  Aligned_cols=275  Identities=14%  Similarity=0.053  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006010          264 TFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLV  343 (664)
Q Consensus       264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  343 (664)
                      .+..+...+.+.|++++|+..|+++..... .+..++..+...+...|++++|...|+++.+.. +.+...+..+...|.
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT  144 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            355555555555566666655555554422 244455555555555555555555555555432 223444444444455


Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010          344 KLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEE  423 (664)
Q Consensus       344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  423 (664)
                      ..|++++|...++++.+..+. +...+..+.                         .....+..+...+...|++++|..
T Consensus       145 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~  198 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVKE  198 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHHH
Confidence            555555555444444432110 000000000                         012233445667778888888888


Q ss_pred             HHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 006010          424 ILFEMINNGCAA--NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR  501 (664)
Q Consensus       424 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  501 (664)
                      .++++.+.. +.  +..++..+...|...|++++|.+.++++.+.. +.+..+|..+..++...|++++|...|+++++.
T Consensus       199 ~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  276 (365)
T 4eqf_A          199 LYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI  276 (365)
T ss_dssp             HHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            888888764 33  67788888888888889999988888888765 556788888999999999999999999988875


Q ss_pred             CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC---------CHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010          502 GCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP---------DVFTYNILLNALCKQSNISHSIDLLNS  569 (664)
Q Consensus       502 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~  569 (664)
                      . +.+..++..++.+|...|++++|...|++++...+....         +...|..+..++...|+.+.+..+.++
T Consensus       277 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          277 Q-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             C-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             C-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            3 334778888999999999999999999998765543221         356788999999999999888877665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=1.4e-16  Score=154.08  Aligned_cols=240  Identities=14%  Similarity=0.088  Sum_probs=87.3

Q ss_pred             hCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006010           95 NSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRAL  174 (664)
Q Consensus        95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  174 (664)
                      +.|++++|.+.++++..      +.+|..++.++.+.|++++|++.|.+.       +|...|..++..+...|++++|+
T Consensus        15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            55667777777777721      237777888888888888888877542       45557777777777778888888


Q ss_pred             HHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010          175 EFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQ  254 (664)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  254 (664)
                      .+++...+     ..++..+...++.+|.+.|+++++.++++.       |+..+|..+...|...|++++|...|..+ 
T Consensus        82 ~yl~~ark-----~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-  148 (449)
T 1b89_A           82 KYLQMARK-----KARESYVETELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-  148 (449)
T ss_dssp             --------------------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT-
T ss_pred             HHHHHHHH-----hCccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence            86666654     124456677777778888887777766642       45567777778888888888888877765 


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 006010          255 VDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVT  334 (664)
Q Consensus       255 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  334 (664)
                              ..|..++.++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......     +..++.-
T Consensus       149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~  209 (449)
T 1b89_A          149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE  209 (449)
T ss_dssp             --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHH
T ss_pred             --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhh
Confidence                    25777777788888888887777776      1667777777788878887777544333     2223334


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010          335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKE  380 (664)
Q Consensus       335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  380 (664)
                      ...++..|.+.|++++|..+++...... +.....|+.+..+|++-
T Consensus       210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence            4556677777777777777777776554 33556666666666544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=4.3e-17  Score=159.13  Aligned_cols=260  Identities=13%  Similarity=0.027  Sum_probs=171.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006010          371 STLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES  450 (664)
Q Consensus       371 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  450 (664)
                      ..+...+...|++++|+.+++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus        25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~  102 (327)
T 3cv0_A           25 MEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE  102 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence            3344444444555555555554444321 134444444445555555555555555554432 33444555555555555


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006010          451 GKGHKAVEIWKDMAKNNCVYNEVCYSVL--------------IH-GLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIH  515 (664)
Q Consensus       451 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  515 (664)
                      |++++|.+.++.+.+.. +.+...+..+              .. .+...|++++|...++++.+.. +.+..++..++.
T Consensus       103 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~  180 (327)
T 3cv0_A          103 HNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV  180 (327)
T ss_dssp             TCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            55555555555555433 1111122211              22 3667788999999999988763 336778889999


Q ss_pred             HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhcc
Q 006010          516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLE  594 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~  594 (664)
                      .+...|++++|...+++++...+.   +...|..+...+...|++++|...++++.+  ..|+ ...+..+..       
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~-------  248 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELRPD---DAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAV-------  248 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH-------
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHH-------
Confidence            999999999999999999765443   677888999999999999999999999987  3454 333433333       


Q ss_pred             CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCC-------------ChHHHHHHHHHhcccchHHHHHHHHHhh
Q 006010          595 APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSP-------------QTSTWERVVQELCRPKRIQAAINKCWSN  661 (664)
Q Consensus       595 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~  661 (664)
                                    ++...|++++|.+.++++.+.  .|             ++..|..++.++.+.|+.++|...+.+.
T Consensus       249 --------------~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          249 --------------SYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             --------------HHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             --------------HHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                          389999999999999999875  33             4688999999999999999999988765


Q ss_pred             h
Q 006010          662 L  662 (664)
Q Consensus       662 l  662 (664)
                      +
T Consensus       313 l  313 (327)
T 3cv0_A          313 V  313 (327)
T ss_dssp             S
T ss_pred             H
Confidence            4

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=1.3e-15  Score=157.07  Aligned_cols=364  Identities=11%  Similarity=-0.047  Sum_probs=252.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHhhcccC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C
Q 006010          191 NTLTFNLVIKTVCRLGLVDNAIQLFREMPVR--------NCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVD-----G  257 (664)
Q Consensus       191 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~  257 (664)
                      ....||.+...+...|++++|++.|++..+.        .-+....+|..+..+|...|++++|...+++....     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            4568999999999999999999999987532        11334678999999999999999999999987652     1


Q ss_pred             --CCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCC
Q 006010          258 --CFPTPVTFNVLINGLCK--NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHG---LCLKGNLDKAVSLLDRMVASKCMP  330 (664)
Q Consensus       258 --~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~  330 (664)
                        ......++..+..++..  .+++++|+..|++.....+. +...+..+..+   +...++.++|++.+++..+.. +.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~  207 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD  207 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence              11234566666555555  45799999999999887432 45555555444   445688899999999988764 34


Q ss_pred             ChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006010          331 NEVTYGTIINGLVK----LGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYS  406 (664)
Q Consensus       331 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  406 (664)
                      +...+..+...+..    .++.++|.+.+++.....+. +...+..+...|...|++++|+..+++..+..+. +..++.
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~  285 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC  285 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence            55666666555544    46788999999998887654 7788899999999999999999999999987433 566777


Q ss_pred             HHHHHHHhc-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010          407 ALIDGLCRV-------------------GKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN  467 (664)
Q Consensus       407 ~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  467 (664)
                      .+..+|...                   +..+.|...++.+.+.. +.+...+..+...|...|++++|++.|++..+..
T Consensus       286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~  364 (472)
T 4g1t_A          286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE  364 (472)
T ss_dssp             HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence            777776532                   23566777777777654 4456677788888999999999999999888765


Q ss_pred             CCCCHH--HHHHHHH-HHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH
Q 006010          468 CVYNEV--CYSVLIH-GLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV  544 (664)
Q Consensus       468 ~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  544 (664)
                      ..+...  .+..+.. .....|+.++|+..|++.++.  .|+.....         +..+.+.+++++.+..+|.   +.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~p~---~~  430 (472)
T 4g1t_A          365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKNGA---DS  430 (472)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHCC----CT
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhCCC---CH
Confidence            332221  2222322 234678899999999888874  45533222         2234556667776655544   67


Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006010          545 FTYNILLNALCKQSNISHSIDLLNSMMDR  573 (664)
Q Consensus       545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  573 (664)
                      .+|..+..+|...|++++|++.|++.++.
T Consensus       431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~  459 (472)
T 4g1t_A          431 EALHVLAFLQELNEKMQQADEDSERGLES  459 (472)
T ss_dssp             THHHHHHHHHHHHHHCC------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            78999999999999999999999999974

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=2.4e-16  Score=152.36  Aligned_cols=283  Identities=11%  Similarity=0.081  Sum_probs=109.3

Q ss_pred             hcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010          204 RLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAK  283 (664)
Q Consensus       204 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  283 (664)
                      +.|++++|.++++++.      +..+|..++.++.+.|++++|++.|.+.      +|..+|..++..+...|++++|+.
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            4566677777776662      2236667777777777777777777542      355566677777777777777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006010          284 LVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKF  363 (664)
Q Consensus       284 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  363 (664)
                      .++..++.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..++..|...|.+++|...|..+     
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----  148 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----  148 (449)
T ss_dssp             ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence            66555543  3345566667777777777777666653       245567777777777777777777777755     


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010          364 HVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSL  443 (664)
Q Consensus       364 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  443 (664)
                          ..|..++.++.+.|++++|++.++++      .++.+|..++.+|...|+++.|......+     ...+.....+
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l  213 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL  213 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence                25677777777777777777777766      15677777777777777777775444332     2233444457


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHhCCCCc------CHHhHHHHHH
Q 006010          444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED--GKLREARMVWTQMLSRGCKP------DVVAYSSMIH  515 (664)
Q Consensus       444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~  515 (664)
                      +..|.+.|.+++|..+++...... +.....|+.+...|++-  ++..+.++.|..-+  +++|      +...|..+..
T Consensus       214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~  290 (449)
T 1b89_A          214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF  290 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777655 55566677776666654  23334444433211  2222      3456777777


Q ss_pred             HHHHcCCHHHHHHHH
Q 006010          516 GLCNAGSVEEALKLF  530 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~  530 (664)
                      .|...++++.|....
T Consensus       291 ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          291 LYDKYEEYDNAIITM  305 (449)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHhhchHHHHHHHH
Confidence            777888888777643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=2e-16  Score=154.35  Aligned_cols=233  Identities=10%  Similarity=-0.077  Sum_probs=148.1

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL  161 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  161 (664)
                      +...+......+...|++++|..+|+++.+..+ .+..++..++.++...|++++|++.|+++++.  .+.+..++..++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la   96 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALA   96 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHH
Confidence            345678888999999999999999999998764 47778889999999999999999999998775  456788899999


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcccCCCCcCH-HHHHHH--------------HH-HHHhcCChhHHHHHHhhcccCCCCC
Q 006010          162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNT-LTFNLV--------------IK-TVCRLGLVDNAIQLFREMPVRNCEP  225 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l--------------l~-~~~~~g~~~~A~~~~~~~~~~~~~~  225 (664)
                      ..+...|++++|...++++.+..     |+. ..+..+              .. .+...|++++|.+.++++.+.. +.
T Consensus        97 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~  170 (327)
T 3cv0_A           97 VSHTNEHNANAALASLRAWLLSQ-----PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PN  170 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTS-----TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-----CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CC
Confidence            99999999999999999998732     222 222222              11 2444455555555555554443 33


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006010          226 DIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIH  305 (664)
Q Consensus       226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~  305 (664)
                      +...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.... +.+..++..+..
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~  248 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAV  248 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence            44555555555555555555555555554432 2234445555555555555555555555554432 113444444555


Q ss_pred             HHHhcCChHHHHHHHHHHHH
Q 006010          306 GLCLKGNLDKAVSLLDRMVA  325 (664)
Q Consensus       306 ~~~~~g~~~~a~~~~~~~~~  325 (664)
                      .+...|++++|.+.++++.+
T Consensus       249 ~~~~~g~~~~A~~~~~~a~~  268 (327)
T 3cv0_A          249 SYSNMSQYDLAAKQLVRAIY  268 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHH
Confidence            55555555555555555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=8.9e-16  Score=145.84  Aligned_cols=255  Identities=13%  Similarity=0.088  Sum_probs=159.4

Q ss_pred             HHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010           90 IQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL  169 (664)
Q Consensus        90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (664)
                      ++-....|+++.|+..++.....++.........+.++|...|++++|+..++..     .+|+..++..++..+...++
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCc
Confidence            3445566777777777666554443322345556677777777777777655431     34556667777777777777


Q ss_pred             HhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010          170 YHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVL  248 (664)
Q Consensus       170 ~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  248 (664)
                      .++|++.++++..   .+..| +...+..+..++...|++++|++.+++      +.+...+..++..+.+.|++++|.+
T Consensus        81 ~~~A~~~l~~ll~---~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~  151 (291)
T 3mkr_A           81 RDAIVAELDREMS---RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK  151 (291)
T ss_dssp             HHHHHHHHHHHHH---SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHh---cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            7777777777765   33333 344555566677777777777777766      3456677777777777777777777


Q ss_pred             HHHHHHhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010          249 LLDEMQVDGCFPTPVTF---NVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVA  325 (664)
Q Consensus       249 ~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  325 (664)
                      .++++.+..  |+....   ..++..+...|++++|..+|+++.... +.+...++.+..++...|++++|...++++++
T Consensus       152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~  228 (291)
T 3mkr_A          152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD  228 (291)
T ss_dssp             HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777776653  332211   122233334467777777777776652 34666667777777777777777777777666


Q ss_pred             CCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHcC
Q 006010          326 SKCMPNEVTYGTIINGLVKLGRAVD-GARVLMSMEERK  362 (664)
Q Consensus       326 ~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~  362 (664)
                      .. +-++.++..++..+...|+.++ +.++++++.+..
T Consensus       229 ~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          229 KD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            53 3355666666666666666654 456666666553

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.74  E-value=1.9e-15  Score=143.56  Aligned_cols=149  Identities=11%  Similarity=0.039  Sum_probs=74.6

Q ss_pred             HHHHcCCHhHHHHHHHHHHhcccCCCCcCH--HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 006010          163 VIIQEGLYHRALEFYNHIVNAKHMNILPNT--LTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE  240 (664)
Q Consensus       163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  240 (664)
                      .....|+++.|+..++.+..     ..|+.  .....+..+|...|+++.|+..++..    -+|+..++..+...+...
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~-----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKP-----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHhccc-----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCC
Confidence            33445555555555555432     22322  23334455555555555555544331    134444555555555555


Q ss_pred             CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          241 NRLDEAVLLLDEMQVDGCFP-TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSL  319 (664)
Q Consensus       241 g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~  319 (664)
                      |+.++|++.++++...+..| +...+..+...+...|++++|++.+++      +.+...+..++..+.+.|++++|.+.
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            55555555555555443222 334444444555555555555555554      23444555555555555555555555


Q ss_pred             HHHHHHC
Q 006010          320 LDRMVAS  326 (664)
Q Consensus       320 ~~~~~~~  326 (664)
                      ++++.+.
T Consensus       153 l~~~~~~  159 (291)
T 3mkr_A          153 LKKMQDQ  159 (291)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            5555544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.71  E-value=4.5e-15  Score=150.71  Aligned_cols=313  Identities=12%  Similarity=0.022  Sum_probs=135.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010          234 MDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGEL---GRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLK  310 (664)
Q Consensus       234 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  310 (664)
                      ...+.+.|++++|.++|++..+.|   ++..+..|...|...|+.   ++|...|++..+.    +...+..+...+...
T Consensus        10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~   82 (452)
T 3e4b_A           10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK   82 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence            334444455555555555544433   222233333334444444   4555555554422    233333333323333


Q ss_pred             C-----ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006010          311 G-----NLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRA---VDGARVLMSMEERKFHVNEYIYSTLISGLFKEGK  382 (664)
Q Consensus       311 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  382 (664)
                      +     +.++|...|++..+.|   +...+..+...|...+..   .++.+.+....+.|   +......+...|...+.
T Consensus        83 ~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~  156 (452)
T 3e4b_A           83 PGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT  156 (452)
T ss_dssp             --CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred             CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence            2     4455555555555543   222444444444443322   22333333333332   22344444555555554


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHH
Q 006010          383 AEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG---KPDEAEEILFEMINNGCAANAFTYSSLMKGFFES----GKGHK  455 (664)
Q Consensus       383 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~  455 (664)
                      ++++......+.+.-...++..+..+...|...|   +.++|...|++..+.| +++...+..+...|...    +++++
T Consensus       157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~  235 (452)
T 3e4b_A          157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT  235 (452)
T ss_dssp             GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred             cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence            4333333222222111112235555555555555   5666666666666655 34444444455555333    45666


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHH-H--HcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC-----CHHHHH
Q 006010          456 AVEIWKDMAKNNCVYNEVCYSVLIHG-L--CEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG-----SVEEAL  527 (664)
Q Consensus       456 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~  527 (664)
                      |.+.|+...    +.+...+..+... +  ...+++++|...|++..+.|   +...+..+...|. .|     ++++|.
T Consensus       236 A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~  307 (452)
T 3e4b_A          236 AQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE  307 (452)
T ss_dssp             HHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred             HHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence            666666655    2334444444444 2  34566666666666666544   3445555555554 33     666666


Q ss_pred             HHHHHhhhcCCCCCCCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 006010          528 KLFNEMLCLEPKSQPDVFTYNILLNALCK----QSNISHSIDLLNSMMDRG  574 (664)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  574 (664)
                      .+|+++  . ++   +...+..+...|..    ..++++|..+|++..+.|
T Consensus       308 ~~~~~A--a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          308 AHFEKA--V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             HHHHTT--T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHH--h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            666665  2 22   44455555555544    226666666666666544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.69  E-value=5.9e-17  Score=169.05  Aligned_cols=151  Identities=12%  Similarity=0.095  Sum_probs=117.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHhhcc---cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 006010          191 NTLTFNLVIKTVCRLGLVDNAIQLFREMP---VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNV  267 (664)
Q Consensus       191 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  267 (664)
                      -..+|+++|.+||+.|++++|.++|++|.   ..|+.||+.+||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            44589999999999999999999997764   457889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------hhhHHHHHH
Q 006010          268 LINGLCKNGEL-GRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPN------EVTYGTIIN  340 (664)
Q Consensus       268 li~~~~~~g~~-~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~  340 (664)
                      +|.++++.|+. ++|.++|++|...|+.||..+|+.++....+.    .+++..+++ ..++.|+      ..+...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            99999998874 78889999999999999999999887655433    333334333 2234443      445556666


Q ss_pred             HHHhcC
Q 006010          341 GLVKLG  346 (664)
Q Consensus       341 ~~~~~~  346 (664)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            666544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.69  E-value=3.9e-15  Score=135.06  Aligned_cols=198  Identities=11%  Similarity=0.028  Sum_probs=118.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHH
Q 006010          434 AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSM  513 (664)
Q Consensus       434 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  513 (664)
                      |++...+..+...+...|++++|...+++..+.. |.+...+..+...+...|++++|...+++.++.. +.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            3444555556666666666666666666666554 4455566666666666666666666666666542 2234556666


Q ss_pred             HHHHHHc-----------CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010          514 IHGLCNA-----------GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC  582 (664)
Q Consensus       514 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  582 (664)
                      ..++...           |++++|+..|++++...|.   +...|..+..++...|++++|+..++++++..  .+...+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~  154 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR---YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR  154 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence            6666666           7777777777777665554   56667777777777777777777777777654  344444


Q ss_pred             HHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHh
Q 006010          583 NIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWS  660 (664)
Q Consensus       583 ~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  660 (664)
                      ..+...                     +...|++++|...++++.+. .+.++..+..++..+...|++++|+..|.+
T Consensus       155 ~~la~~---------------------~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          155 SALAEL---------------------YLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHH---------------------HHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHH---------------------HHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            444333                     77777777777777777764 244567777777777777888777777655

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.68  E-value=4.8e-12  Score=132.57  Aligned_cols=233  Identities=12%  Similarity=0.019  Sum_probs=152.0

Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010          352 ARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAM-KLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMIN  430 (664)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  430 (664)
                      ..+|+++....+. ....|...+..+...|+.++|. .+|++.... ++.+...|...+...-+.|+++.|..+|+.+++
T Consensus       329 ~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          329 TYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4456665554322 5666666666666677777775 777777654 233444555666666677777777777777765


Q ss_pred             CC----------CCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-CCh
Q 006010          431 NG----------CAA-----------NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED-GKL  488 (664)
Q Consensus       431 ~~----------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~  488 (664)
                      ..          .+.           ...+|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.
T Consensus       407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~  486 (679)
T 4e6h_A          407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT  486 (679)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence            31          111           13467777777778888889999998888751122334444333333343 458


Q ss_pred             HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHH
Q 006010          489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLN  568 (664)
Q Consensus       489 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  568 (664)
                      +.|.++|+..++. .+-+...|...+......|+.+.|..+|++++...+...-....|..++..-.+.|+.+.+..+.+
T Consensus       487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~  565 (679)
T 4e6h_A          487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK  565 (679)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8999999988875 333556677788878888999999999999853222111234578888888888899999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHhh
Q 006010          569 SMMDRGCDPDLVTCNIFLTAL  589 (664)
Q Consensus       569 ~~~~~~~~p~~~~~~~ll~~~  589 (664)
                      ++.+  ..|+......+..-+
T Consensus       566 R~~~--~~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          566 RFFE--KFPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHH--HSTTCCHHHHHHHHT
T ss_pred             HHHH--hCCCCcHHHHHHHHh
Confidence            9987  355555555555554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.67  E-value=7.2e-17  Score=168.42  Aligned_cols=119  Identities=11%  Similarity=0.077  Sum_probs=110.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006010          226 DIYTYCTLMDGLCKENRLDEAVLLLDEMQV---DGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNT  302 (664)
Q Consensus       226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~  302 (664)
                      -..+|++||++||+.|++++|.++|++|.+   .|+.||.+|||+||++|++.|++++|.++|++|...|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            457899999999999999999999988764   57899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 006010          303 LIHGLCLKGNL-DKAVSLLDRMVASKCMPNEVTYGTIINGLVK  344 (664)
Q Consensus       303 l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  344 (664)
                      +|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            99999999985 7899999999999999999999988865544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=2.1e-14  Score=134.56  Aligned_cols=222  Identities=14%  Similarity=0.103  Sum_probs=135.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC----HHHHHHH
Q 006010          335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK--PN----TVVYSAL  408 (664)
Q Consensus       335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l  408 (664)
                      +..+...+...|++++|...++++.+..  .+...+..+..++...|++++|+..++++.+....  ++    ..++..+
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            3344444444444444444444444443  23444444555555555555555555554432111  11    3455555


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 006010          409 IDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKL  488 (664)
Q Consensus       409 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  488 (664)
                      ...+...|++++|...++++.+..  |+.       ..+...|++++|.+.++.+.... +.+...+..+...+...|++
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence            566666666666666666665542  222       23445566677777777766644 33455667777777777888


Q ss_pred             HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHH
Q 006010          489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLN  568 (664)
Q Consensus       489 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  568 (664)
                      ++|...++++++.. +.+..++..++.++...|++++|...+++++...+.   +...|..+..++.+.|++++|...++
T Consensus       156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            88888887777653 335667777888888888888888888888655443   56677777888888888888888888


Q ss_pred             HHHH
Q 006010          569 SMMD  572 (664)
Q Consensus       569 ~~~~  572 (664)
                      ++.+
T Consensus       232 ~a~~  235 (258)
T 3uq3_A          232 AART  235 (258)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8776

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.67  E-value=1.4e-14  Score=147.13  Aligned_cols=346  Identities=11%  Similarity=0.042  Sum_probs=147.1

Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCCh---hHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 006010          160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLV---DNAIQLFREMPVRNCEPDIYTYCTLMDG  236 (664)
Q Consensus       160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~  236 (664)
                      +...+.+.|++++|..+|+++.+   .+   +...+..+...|...|+.   ++|.+.|+...+.    ++..+..+...
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~---~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~   78 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAE---LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL   78 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HT---CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence            55566666666777776666655   22   223334444455555555   5666666665532    33444445443


Q ss_pred             HHhcC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006010          237 LCKEN-----RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELG---RAAKLVDNMFLKGCLPNEVTYNTLIHGLC  308 (664)
Q Consensus       237 ~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~g~~p~~~~~~~l~~~~~  308 (664)
                      +...+     ++++|+..|++....|.   ...+..|...|...+..+   ++.+.+......|   +...+..+...|.
T Consensus        79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~  152 (452)
T 3e4b_A           79 LAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR  152 (452)
T ss_dssp             HHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred             HHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence            44433     45566666666655442   124444555554443322   2223333332222   2223334444444


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHH
Q 006010          309 LKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEG---KAED  385 (664)
Q Consensus       309 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~  385 (664)
                      ..+.++++......+.+.-...++.                                   .+..+...|.+.|   +.++
T Consensus       153 ~~~~~~~~~~~a~~~~~~a~~~~~~-----------------------------------a~~~Lg~~~~~~g~~~~~~~  197 (452)
T 3e4b_A          153 TQGTYDQHLDDVERICKAALNTTDI-----------------------------------CYVELATVYQKKQQPEQQAE  197 (452)
T ss_dssp             HHTCGGGGHHHHHHHHHHHTTTCTT-----------------------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCCcccCHHHHHHHHHHHHcCCHH-----------------------------------HHHHHHHHHHHcCCcccHHH
Confidence            4443333222222111111111222                                   4444444444444   4455


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChHHHHH
Q 006010          386 AMKLWKQMMEKGCKPNTVVYSALIDGLCRV----GKPDEAEEILFEMINNGCAANAFTYSSLMKG-F--FESGKGHKAVE  458 (664)
Q Consensus       386 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~  458 (664)
                      |+..|++..+.|. ++...+..+...|...    +++++|...|++.. .   -+...+..+... |  ...+++++|.+
T Consensus       198 A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~  272 (452)
T 3e4b_A          198 LLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMK  272 (452)
T ss_dssp             HHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            5555555544432 1333223333333322    45555555555554 2   233334444443 2  33455555555


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----cCCHHHHHHH
Q 006010          459 IWKDMAKNNCVYNEVCYSVLIHGLCEDG-----KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----AGSVEEALKL  529 (664)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~  529 (664)
                      .|++..+.+   +...+..+...|. .|     ++++|...|++.. .|   +...+..+...|..    ..++++|..+
T Consensus       273 ~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~  344 (452)
T 3e4b_A          273 YLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDH  344 (452)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence            555555543   3444444444444 23     5666666666555 22   34445555555544    2366666666


Q ss_pred             HHHhhhcCCCCCCCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 006010          530 FNEMLCLEPKSQPDVFTYNILLNALCK----QSNISHSIDLLNSMMDRG  574 (664)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  574 (664)
                      |+++  .+.+   +......|...|..    ..++++|..++++..+.|
T Consensus       345 ~~~A--a~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g  388 (452)
T 3e4b_A          345 LLTA--ARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD  388 (452)
T ss_dssp             HHHH--HTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred             HHHH--HhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence            6666  3333   33344445555442    336666666666666544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.66  E-value=1e-14  Score=132.26  Aligned_cols=198  Identities=16%  Similarity=0.078  Sum_probs=127.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK  445 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  445 (664)
                      +...+..+...+.+.|++++|+..|++..+... .+...+..+...+.+.|++++|...++++++.. |.+...+..+..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~   81 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE   81 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            344555555666666666666666666655432 245555566666666666666666666666553 445556666666


Q ss_pred             HHHhc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHH
Q 006010          446 GFFES-----------GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMI  514 (664)
Q Consensus       446 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~  514 (664)
                      .+...           |++++|+..+++..+.. |.+...+..+...+...|++++|+..|+++++..  .+...+..+.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la  158 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence            66666           88888888888887765 4566777778888888888888888888888765  5677788888


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          515 HGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      .++...|++++|+..|++++...|+   +...+..+...+...|++++|+..+++..
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAPK---DLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            8888888888888888888766554   66777778888888888888888877654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=3.1e-14  Score=133.43  Aligned_cols=225  Identities=12%  Similarity=0.070  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CC----HHHHHH
Q 006010          299 TYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFH--VN----EYIYST  372 (664)
Q Consensus       299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~  372 (664)
                      .+..+...+...|++++|...++++.+..  .+...+..+...+...|++++|.+.+.+..+....  ++    ...+..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34444444455555555555555554443  34444555555555555555555555554443211  01    355666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006010          373 LISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGK  452 (664)
Q Consensus       373 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  452 (664)
                      +...+...|++++|+..++++.+..  |+.       ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence            6666777777777777777766642  232       23555567777777777777653 4455667777777888888


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 006010          453 GHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNE  532 (664)
Q Consensus       453 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  532 (664)
                      +++|...++.+.+.. +.+...+..+...+...|++++|...++++++.. +.+..++..+..++...|++++|...+++
T Consensus       155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            888888888877765 4567777888888888888888888888887753 33467788888888888888888888888


Q ss_pred             hhhcC
Q 006010          533 MLCLE  537 (664)
Q Consensus       533 ~~~~~  537 (664)
                      ++...
T Consensus       233 a~~~~  237 (258)
T 3uq3_A          233 ARTKD  237 (258)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            86543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.63  E-value=1.1e-11  Score=129.99  Aligned_cols=457  Identities=9%  Similarity=0.006  Sum_probs=290.9

Q ss_pred             hhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---HHHHHH
Q 006010           63 QPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHL---VEEAIR  139 (664)
Q Consensus        63 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~  139 (664)
                      ++..+..|+......  +.+...|..++..+.+.+.++.++.+|++++..- |.....|...+..-.+.|.   ++.+.+
T Consensus        48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~  124 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP  124 (679)
T ss_dssp             CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            344455565554443  3588999999999999999999999999999865 5678899999998888888   999999


Q ss_pred             HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCH--------hHHHHHHHHHHhcccCCC-CcC-HHHHHHHHHHHH------
Q 006010          140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLY--------HRALEFYNHIVNAKHMNI-LPN-TLTFNLVIKTVC------  203 (664)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~~~~~~~-~~~-~~~~~~ll~~~~------  203 (664)
                      +|++.+.....+|++..|...+....+.++.        +...++|+.++..  .|. .++ ...|...+....      
T Consensus       125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~--vG~~d~~s~~iW~~Yi~f~~~~~~~~  202 (679)
T 4e6h_A          125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK--CAIFEPKSIQFWNEYLHFLEHWKPVN  202 (679)
T ss_dssp             HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH--TTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--hCcccccchHHHHHHHHHHHhccccC
Confidence            9999987633348999999888877776654        3355788887653  344 343 457777776544      


Q ss_pred             ---hcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 006010          204 ---RLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGR  280 (664)
Q Consensus       204 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  280 (664)
                         ..++++.+..+|+.++......-..+|......--..+. ..+.+++.+..                     .+++.
T Consensus       203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~---------------------~~y~~  260 (679)
T 4e6h_A          203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS---------------------AQYMN  260 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------HHHHH
T ss_pred             cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------HHHHH
Confidence               234578889999998854211112333332221111111 11222221110                     11222


Q ss_pred             HHHHHHHHHHc--CCC---------------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCC
Q 006010          281 AAKLVDNMFLK--GCL---------------P-----N---EVTYNTLIHGLCLKG-------NLDKAVSLLDRMVASKC  328 (664)
Q Consensus       281 a~~~~~~~~~~--g~~---------------p-----~---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~  328 (664)
                      |...+.++...  ++.               |     +   ...|...+..--..+       ..+.+..+|++++.. +
T Consensus       261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~  339 (679)
T 4e6h_A          261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V  339 (679)
T ss_dssp             HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence            22222221100  000               0     0   123444443322221       123456677777765 3


Q ss_pred             CCChhhHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------C
Q 006010          329 MPNEVTYGTIINGLVKLGRAVDGA-RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKG---------C  398 (664)
Q Consensus       329 ~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~  398 (664)
                      +-+...|...+..+...|+.++|. +++++..... +.+...+...+...-+.|+++.|..+|+++....         -
T Consensus       340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            446777777777777778877886 8888877643 3356666777777777888888888888877531         0


Q ss_pred             CC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHH
Q 006010          399 KP------------NTVVYSALIDGLCRVGKPDEAEEILFEMINN-GCAANAFTYSSLMKGFFES-GKGHKAVEIWKDMA  464 (664)
Q Consensus       399 ~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~  464 (664)
                      .|            ....|...+....+.|+.+.|..+|..+++. + ......|...+..-.+. ++.+.|.++|+...
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L  497 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGL  497 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            12            1346777788778888899999999999876 2 22233443333333344 45899999999888


Q ss_pred             HCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc--CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC
Q 006010          465 KNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP--DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP  542 (664)
Q Consensus       465 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  542 (664)
                      +.. +.+...+...+......|+.+.|..+|+..+.....+  ....|...+..-.+.|+.+.+.++.+++....|.   
T Consensus       498 k~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~---  573 (679)
T 4e6h_A          498 KYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE---  573 (679)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT---
T ss_pred             HHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence            763 5566777788888888899999999999988764322  3467888888888899999999999998754443   


Q ss_pred             CHhHHHHHHHHH
Q 006010          543 DVFTYNILLNAL  554 (664)
Q Consensus       543 ~~~~~~~l~~~~  554 (664)
                       ......+++-|
T Consensus       574 -~~~~~~f~~ry  584 (679)
T 4e6h_A          574 -VNKLEEFTNKY  584 (679)
T ss_dssp             -CCHHHHHHHHT
T ss_pred             -CcHHHHHHHHh
Confidence             23344445444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.62  E-value=2.3e-13  Score=128.65  Aligned_cols=239  Identities=10%  Similarity=0.019  Sum_probs=184.3

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKR-TVKSFNSV  160 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l  160 (664)
                      ++..+......+...|+++.|...|+.+.+..+. +..++..++.+|...|++++|++.|++.+.....+. ...+|..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence            4456778888999999999999999999987643 555788888899999999999999999876321111 24558899


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 006010          161 LNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE  240 (664)
Q Consensus       161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  240 (664)
                      +..+...|++++|...|+++.+..+    .+..++..+...+...|++++|.+.|++..+.. +.+...+..+...+...
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~  155 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDT----TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN  155 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST----TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence            9999999999999999999987322    245688889999999999999999999998874 55677788777445555


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhc
Q 006010          241 NRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGE---LGRAAKLVDNMFLKG-CLPN------EVTYNTLIHGLCLK  310 (664)
Q Consensus       241 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~  310 (664)
                      +++++|.+.|+++.+.. +.+...+..+...+...|+   +++|...++++.... ..|+      ..+|..+...|...
T Consensus       156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  234 (272)
T 3u4t_A          156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN  234 (272)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence            69999999999988753 3346777778888888887   888888888876541 1122      24677777888888


Q ss_pred             CChHHHHHHHHHHHHCC
Q 006010          311 GNLDKAVSLLDRMVASK  327 (664)
Q Consensus       311 g~~~~a~~~~~~~~~~~  327 (664)
                      |++++|.+.++++.+..
T Consensus       235 ~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          235 RDKVKADAAWKNILALD  251 (272)
T ss_dssp             TCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhcC
Confidence            88888888888888763

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.62  E-value=2.2e-13  Score=128.80  Aligned_cols=258  Identities=11%  Similarity=0.071  Sum_probs=188.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006010          369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA--NAFTYSSLMKG  446 (664)
Q Consensus       369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~  446 (664)
                      .+......+...|++++|+..++++.+.... +...+..+...+...|++++|...++++++.+..+  ....+..+...
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            4555667778888888888888888876432 45577778888888888888888888888743111  23457888888


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHH
Q 006010          447 FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEA  526 (664)
Q Consensus       447 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  526 (664)
                      +...|++++|++.+++..+.. +.+...+..+...+...|++++|...+++.++.. +.+...+..+...+...+++++|
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988865 4566788999999999999999999999998762 33566777777344556799999


Q ss_pred             HHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC---hhHHHHHHHHHHHCC-CCCCHHHHHHHHHhhhhhccCCCCchhh
Q 006010          527 LKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN---ISHSIDLLNSMMDRG-CDPDLVTCNIFLTALKEKLEAPQDGTDF  602 (664)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~~~  602 (664)
                      ...|++++...+.   +...+..+..++...|+   +++|...++++.+.. ..|+.. -..+...              
T Consensus       162 ~~~~~~a~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~--------------  223 (272)
T 3u4t_A          162 DSSFVKVLELKPN---IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDELIEA--------------  223 (272)
T ss_dssp             HHHHHHHHHHSTT---CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHHHHH--------------
T ss_pred             HHHHHHHHHhCcc---chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHHHHH--------------
Confidence            9999999876554   56778888888888888   888999999988631 123321 1111111              


Q ss_pred             hHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 006010          603 LNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRP  648 (664)
Q Consensus       603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  648 (664)
                      +..++.+|...|++++|.+.++++.+. .+.++..+..+.......
T Consensus       224 ~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          224 NEYIAYYYTINRDKVKADAAWKNILAL-DPTNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHC------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc-CccHHHHHHHhhhhhccc
Confidence            223556699999999999999999985 244667777666555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.61  E-value=4.3e-13  Score=131.65  Aligned_cols=227  Identities=12%  Similarity=0.057  Sum_probs=112.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006010          300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGR-AVDGARVLMSMEERKFHVNEYIYSTLISGLF  378 (664)
Q Consensus       300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  378 (664)
                      |..+...+...|++++|++.+++++... +-+...|..+...+...|+ +++|+..++++.+..+. +...|..+..++.
T Consensus       100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~  177 (382)
T 2h6f_A          100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE  177 (382)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence            3444444444444555555554444432 2233444444444444443 55555555554444333 4444555555555


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHH-
Q 006010          379 KEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFE-SGKGHKA-  456 (664)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-  456 (664)
                      ..|++++|+..|+++++.... +...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..++| 
T Consensus       178 ~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          178 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence            555555555555555544322 44455555555555555555555555555543 3345555555555555 3333444 


Q ss_pred             ----HHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC---------
Q 006010          457 ----VEIWKDMAKNNCVYNEVCYSVLIHGLCEDG--KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG---------  521 (664)
Q Consensus       457 ----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------  521 (664)
                          ++.+++.+... +.+...|..+...+...|  ++++|.+.+.++ +. -+.+...+..++.+|.+.|         
T Consensus       256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~  332 (382)
T 2h6f_A          256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKED  332 (382)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHH
Confidence                35555555544 344455555555555555  456666666555 22 1223455555666665542         


Q ss_pred             CHHHHHHHHHHh
Q 006010          522 SVEEALKLFNEM  533 (664)
Q Consensus       522 ~~~~A~~~~~~~  533 (664)
                      .+++|+.+|+++
T Consensus       333 ~~~~A~~~~~~l  344 (382)
T 2h6f_A          333 ILNKALELCEIL  344 (382)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            235666666665

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.61  E-value=4.5e-14  Score=133.77  Aligned_cols=250  Identities=8%  Similarity=-0.038  Sum_probs=167.4

Q ss_pred             hcCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006010          379 KEGKAEDAMKLWKQMMEKGCK---PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHK  455 (664)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  455 (664)
                      ..|++++|+..++++.+....   .+..++..+...+...|++++|...|+++++.. +.+...+..+...|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            346677777777777765321   134566777777788888888888888877764 4567778888888888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010          456 AVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC  535 (664)
Q Consensus       456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (664)
                      |.+.++++.+.. +.+...+..+...+...|++++|...++++.+.  .|+.......+..+...|++++|...+++++.
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            888888887765 446677888888888888888888888888774  34444444444455667888888888887765


Q ss_pred             cCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCC
Q 006010          536 LEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQR  615 (664)
Q Consensus       536 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  615 (664)
                      ..+.   +...+ .++..+...++.++|+..++++.+.  .|+...-.  .              ..+..++.++.+.|+
T Consensus       173 ~~~~---~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~--~--------------~~~~~la~~~~~~g~  230 (275)
T 1xnf_A          173 KSDK---EQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHL--S--------------ETNFYLGKYYLSLGD  230 (275)
T ss_dssp             HSCC---CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHH--H--------------HHHHHHHHHHHHTTC
T ss_pred             cCCc---chHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccc--c--------------HHHHHHHHHHHHcCC
Confidence            4332   33333 3566667777888888888887652  22210000  0              011234455888899


Q ss_pred             cchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHH
Q 006010          616 TSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKC  658 (664)
Q Consensus       616 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  658 (664)
                      +++|...++++.+.  .|+  .+.....++...|++++|++.|
T Consensus       231 ~~~A~~~~~~al~~--~p~--~~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          231 LDSATALFKLAVAN--NVH--NFVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHTT--CCT--TCHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhC--Cch--hHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999998864  332  2344466777888998888765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.60  E-value=3.5e-13  Score=132.30  Aligned_cols=233  Identities=12%  Similarity=0.018  Sum_probs=166.8

Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010           83 DSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHL-VEEAIRLFHTMVDEFHCKRTVKSFNSVL  161 (664)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~  161 (664)
                      ..+|..+...+...|++++|...++.++..++. +..+|..+..++...|+ +++|+..|++++..  .+.+..+|..+.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g  173 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence            456777777888888888888888888877643 67778888888888886 88888888887765  455677888888


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh-c
Q 006010          162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK-E  240 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~  240 (664)
                      .++...|++++|+..|+++++..+    -+...|..+..++.+.|++++|++.|+++++.+ +.+...|+.+..++.. .
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP----~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~  248 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDA----KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT  248 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCc----cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence            888888888888888888877321    255677777888888888888888888887765 4567778888888777 5


Q ss_pred             CChhHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 006010          241 NRLDEA-----VLLLDEMQVDGCFPTPVTFNVLINGLCKNG--ELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKG--  311 (664)
Q Consensus       241 g~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g--  311 (664)
                      |..++|     +..+++..... +-+...|+.+...+...|  ++++|++.+.++ +. .+.+...+..+..+|.+.|  
T Consensus       249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~  325 (382)
T 2h6f_A          249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLEN  325 (382)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcc
Confidence            554666     46677766543 235667777777777766  577777777776 32 2335566677777776653  


Q ss_pred             -------ChHHHHHHHHHH-HHC
Q 006010          312 -------NLDKAVSLLDRM-VAS  326 (664)
Q Consensus       312 -------~~~~a~~~~~~~-~~~  326 (664)
                             ..++|.++|+++ .+.
T Consensus       326 ~~~~~~~~~~~A~~~~~~l~~~~  348 (382)
T 2h6f_A          326 QCDNKEDILNKALELCEILAKEK  348 (382)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             cccchHHHHHHHHHHHHHHHHHh
Confidence                   246777777777 443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.60  E-value=2.7e-12  Score=121.27  Aligned_cols=219  Identities=11%  Similarity=-0.029  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhcccCCCCcCHHHH
Q 006010          120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ----EGLYHRALEFYNHIVNAKHMNILPNTLTF  195 (664)
Q Consensus       120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  195 (664)
                      ++..+...+...|++++|++.|++..+    +.+..++..+...+..    .+++++|...|++..+   .+   +...+
T Consensus         8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~---~~---~~~a~   77 (273)
T 1ouv_A            8 ELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD---LN---YSNGC   77 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---TT---CHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH---CC---CHHHH
Confidence            344444444444444444444444432    1223344444444444    4444444444444443   11   33334


Q ss_pred             HHHHHHHHh----cCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 006010          196 NLVIKTVCR----LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK----ENRLDEAVLLLDEMQVDGCFPTPVTFNV  267 (664)
Q Consensus       196 ~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~  267 (664)
                      ..+...+..    .+++++|++.|++..+.+   +..++..+...|..    .+++++|+..|++..+.+   +...+..
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~  151 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence            444444444    444444444444444332   33444444444444    444444444444444432   3333344


Q ss_pred             HHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006010          268 LINGLCK----NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL----KGNLDKAVSLLDRMVASKCMPNEVTYGTII  339 (664)
Q Consensus       268 li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll  339 (664)
                      +...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..+.
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~  225 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG  225 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence            4444444    444444444444444332   23333444444444    444444444444444432   133333344


Q ss_pred             HHHHh----cCChhHHHHHHHHHHH
Q 006010          340 NGLVK----LGRAVDGARVLMSMEE  360 (664)
Q Consensus       340 ~~~~~----~~~~~~a~~~~~~~~~  360 (664)
                      ..|..    .+++++|.+.+++..+
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHH
Confidence            44444    4444444444444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=6.4e-13  Score=123.94  Aligned_cols=210  Identities=11%  Similarity=0.020  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010          367 EYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKG  446 (664)
Q Consensus       367 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  446 (664)
                      ...+..+...+...|++++|+..++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            34566666677777777777777777766532 256667777777777777778877777777654 4466777777777


Q ss_pred             HHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010          447 FFESGKGHKAVEIWKDMAKNNC-VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE  525 (664)
Q Consensus       447 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  525 (664)
                      |...|++++|.+.++++.+.+. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            8888888888888887776222 2345567777778888888888888888887653 3346777888888888888888


Q ss_pred             HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006010          526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNI  584 (664)
Q Consensus       526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  584 (664)
                      |..++++++...+   .+...+..+...+...|++++|.+.++++.+  ..|+...+..
T Consensus       194 A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~  247 (252)
T 2ho1_A          194 ARQYYDLFAQGGG---QNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEYQE  247 (252)
T ss_dssp             HHHHHHHHHTTSC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHHHH
T ss_pred             HHHHHHHHHHhCc---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHHHH
Confidence            8888888854333   3566777777888888888888888888887  4565554433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=6.9e-13  Score=123.71  Aligned_cols=206  Identities=12%  Similarity=0.006  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010          402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG  481 (664)
Q Consensus       402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  481 (664)
                      ...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            4567778888999999999999999999874 5678899999999999999999999999998876 4577889999999


Q ss_pred             HHcCCChHHHHHHHHHHHhCCCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCCh
Q 006010          482 LCEDGKLREARMVWTQMLSRGCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNI  560 (664)
Q Consensus       482 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  560 (664)
                      +...|++++|.+.++++...+..| +...+..++..+...|++++|..++++++...+.   +...+..+...+...|++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN---QPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCCH
Confidence            999999999999999998833345 4567888999999999999999999999765544   677888999999999999


Q ss_pred             hHHHHHHHHHHHCCCCCCHH-HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHH
Q 006010          561 SHSIDLLNSMMDRGCDPDLV-TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTST  637 (664)
Q Consensus       561 ~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  637 (664)
                      ++|...++++.+  ..|+.. .+..+...                     +...|++++|.++++++.+.  .|+...
T Consensus       192 ~~A~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~~~g~~~~A~~~~~~~~~~--~p~~~~  244 (252)
T 2ho1_A          192 VPARQYYDLFAQ--GGGQNARSLLLGIRL---------------------AKVFEDRDTAASYGLQLKRL--YPGSLE  244 (252)
T ss_dssp             HHHHHHHHHHHT--TSCCCHHHHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHH--CTTSHH
T ss_pred             HHHHHHHHHHHH--hCcCcHHHHHHHHHH---------------------HHHccCHHHHHHHHHHHHHH--CCCCHH
Confidence            999999999987  445433 33333333                     88999999999999999885  444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.58  E-value=7.1e-12  Score=118.34  Aligned_cols=222  Identities=11%  Similarity=-0.070  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006010          227 IYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK----NGELGRAAKLVDNMFLKGCLPNEVTYNT  302 (664)
Q Consensus       227 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~  302 (664)
                      ..++..+...+...|++++|...|++..+.   .+...+..+...|..    .+++++|...|++..+.+   +...+..
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~   79 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   79 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            344444455555555555555555555442   233444444455555    555555555555554443   3444444


Q ss_pred             HHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006010          303 LIHGLCL----KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVK----LGRAVDGARVLMSMEERKFHVNEYIYSTLI  374 (664)
Q Consensus       303 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  374 (664)
                      +...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|.+.+++..+.+   +...+..+.
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg  153 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence            4445544    555555555555554442   34444444444444    455555555555444432   233344444


Q ss_pred             HHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010          375 SGLFK----EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCR----VGKPDEAEEILFEMINNGCAANAFTYSSLMKG  446 (664)
Q Consensus       375 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  446 (664)
                      ..|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..+...
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~  227 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM  227 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence            44444    445555555555544432   23344444444444    455555555555555442   13344444444


Q ss_pred             HHh----cCChHHHHHHHHHHHHC
Q 006010          447 FFE----SGKGHKAVEIWKDMAKN  466 (664)
Q Consensus       447 ~~~----~~~~~~a~~~~~~~~~~  466 (664)
                      |..    .+++++|.+.+++..+.
T Consensus       228 ~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          228 QYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHcCCCcccCHHHHHHHHHHHHHc
Confidence            444    45555555555554443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.57  E-value=2.8e-13  Score=125.59  Aligned_cols=198  Identities=10%  Similarity=0.106  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010          403 VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGL  482 (664)
Q Consensus       403 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  482 (664)
                      ..+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  101 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY  101 (243)
T ss_dssp             ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence            344445555555666666666666665543 3455556666666666666666666666665543 34555566666666


Q ss_pred             HcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhH
Q 006010          483 CEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH  562 (664)
Q Consensus       483 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  562 (664)
                      ...|++++|.+.++++.+.. +.+...+..++..+...|++++|..++++++...+.   +...+..+...+...|++++
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---DTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHcCCHHH
Confidence            66666666666666666542 234555666666666667777777776666544332   45566666666666777777


Q ss_pred             HHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          563 SIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       563 A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      |...++++.+.  .|+ ...+..+...                     +...|++++|.+.++++.+.
T Consensus       178 A~~~~~~~~~~--~~~~~~~~~~la~~---------------------~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          178 ALSQFAAVTEQ--DPGHADAFYNAGVT---------------------YAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHH--CTTCHHHHHHHHHH---------------------HHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CcccHHHHHHHHHH---------------------HHHccCHHHHHHHHHHHHcc
Confidence            77777666652  233 2222222222                     66667777777777776664

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.57  E-value=1.1e-12  Score=119.90  Aligned_cols=213  Identities=8%  Similarity=-0.027  Sum_probs=153.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK  445 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  445 (664)
                      +...+..+...+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            445566667777777777777777777776532 246667777777777788888888887777653 456677777778


Q ss_pred             HHHhc-CChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCH
Q 006010          446 GFFES-GKGHKAVEIWKDMAKNNC-VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSV  523 (664)
Q Consensus       446 ~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  523 (664)
                      .+... |++++|...++.+.+... +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence            88888 888888888888776221 2235667778888888888888888888887753 23467788888888888999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010          524 EEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF  585 (664)
Q Consensus       524 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  585 (664)
                      ++|..++++++...+  ..+...+..+...+...|+.++|..+++.+.+  ..|+......+
T Consensus       164 ~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~  221 (225)
T 2vq2_A          164 GDADYYFKKYQSRVE--VLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTV  221 (225)
T ss_dssp             HHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence            999988888865443  12566677777778888888888888888876  45665554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.57  E-value=1.9e-13  Score=129.47  Aligned_cols=246  Identities=11%  Similarity=-0.016  Sum_probs=148.6

Q ss_pred             cCChHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 006010          310 KGNLDKAVSLLDRMVASKC---MPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDA  386 (664)
Q Consensus       310 ~g~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  386 (664)
                      .|++++|...++++.+...   +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence            3555566666666555421   112344555555666666666666666666555333 455666666666666777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010          387 MKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKN  466 (664)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  466 (664)
                      +..++++.+... .+..++..+...+...|++++|...++++.+..  |+..........+...|++++|...++.....
T Consensus        97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            777766666532 245666666777777777777777777776653  22222333333445567778888877766665


Q ss_pred             CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--c-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC
Q 006010          467 NCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCK--P-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD  543 (664)
Q Consensus       467 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  543 (664)
                      . +++...+. ++..+...++.++|...++++......  | +..++..++..|...|++++|...|++++...+.   +
T Consensus       174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~  248 (275)
T 1xnf_A          174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH---N  248 (275)
T ss_dssp             S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT---T
T ss_pred             C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch---h
Confidence            4 33333333 566667777778888888877654211  0 1467788888888899999999999988643322   2


Q ss_pred             HhHHHHHHHHHHHcCChhHHHHHH
Q 006010          544 VFTYNILLNALCKQSNISHSIDLL  567 (664)
Q Consensus       544 ~~~~~~l~~~~~~~g~~~~A~~~~  567 (664)
                         +.....++...|++++|++.+
T Consensus       249 ---~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 ---FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             ---CHHHHHHHHHHHHHHHC----
T ss_pred             ---HHHHHHHHHHHHHHHhhHHHH
Confidence               233355667778888877765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.57  E-value=1.5e-12  Score=118.95  Aligned_cols=201  Identities=9%  Similarity=0.016  Sum_probs=170.2

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIH  480 (664)
Q Consensus       401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  480 (664)
                      +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            45677888899999999999999999999864 5678899999999999999999999999998876 567788999999


Q ss_pred             HHHcC-CChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010          481 GLCED-GKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS  558 (664)
Q Consensus       481 ~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  558 (664)
                      .+... |++++|...++++++.+..|+ ...+..++.++...|++++|...+++++...+.   +...+..+...+...|
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ---FPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHcC
Confidence            99999 999999999999998333344 577889999999999999999999999765544   5778889999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          559 NISHSIDLLNSMMDRGCDP--DLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       559 ~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      ++++|...++++.+.  .|  +...+..+...                     +...|+.++|..+++.+.+.
T Consensus       162 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          162 QLGDADYYFKKYQSR--VEVLQADDLLLGWKI---------------------AKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             CHHHHHHHHHHHHHH--HCSCCHHHHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh--CCCCCHHHHHHHHHH---------------------HHhcCcHHHHHHHHHHHHHh
Confidence            999999999999874  44  34444333333                     78899999999999999864

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=3e-13  Score=125.33  Aligned_cols=208  Identities=14%  Similarity=0.143  Sum_probs=146.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK  445 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  445 (664)
                      ....+..+...+...|++++|+..|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            444566666777777888888888887776532 356677777777888888888888888877764 456777788888


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010          446 GFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE  525 (664)
Q Consensus       446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  525 (664)
                      .+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            8888888888888888887765 4566778888888888888888888888887753 3456778888888889999999


Q ss_pred             HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010          526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC  582 (664)
Q Consensus       526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  582 (664)
                      |...+++++...+.   +...|..+..+|...|++++|...++++.+  ..|+....
T Consensus       178 A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~  229 (243)
T 2q7f_A          178 ALSQFAAVTEQDPG---HADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLA  229 (243)
T ss_dssp             HHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHH
T ss_pred             HHHHHHHHHHhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHH
Confidence            99999988765443   567788888889999999999999999887  45655443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.52  E-value=2e-13  Score=137.77  Aligned_cols=95  Identities=19%  Similarity=0.126  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHH
Q 006010          335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNE----YIYSTLISGLFKEGKAEDAMKLWKQMMEK----G-CKPNTVVY  405 (664)
Q Consensus       335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~  405 (664)
                      +..+...+...|++++|...++++.+.... +.    ..+..+...|...|++++|+..+++..+.    + ......++
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            334445556666666666666666655332 22    34555555666666666666666655432    0 01122344


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHH
Q 006010          406 SALIDGLCRVGKPDEAEEILFEMIN  430 (664)
Q Consensus       406 ~~li~~~~~~~~~~~a~~~~~~~~~  430 (664)
                      ..+...|...|++++|...++++.+
T Consensus       130 ~~l~~~~~~~g~~~~A~~~~~~al~  154 (411)
T 4a1s_A          130 GNLGNTLKVMGRFDEAAICCERHLT  154 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4555555555666666665555543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.51  E-value=9.9e-13  Score=134.38  Aligned_cols=212  Identities=11%  Similarity=-0.013  Sum_probs=176.8

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 006010          418 PDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKG-HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWT  496 (664)
Q Consensus       418 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  496 (664)
                      ++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            556666777665543 55788888888999999999 99999999988876 5567889999999999999999999999


Q ss_pred             HHHhCCCCcCHHhHHHHHHHHHHc---------CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc--------CC
Q 006010          497 QMLSRGCKPDVVAYSSMIHGLCNA---------GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ--------SN  559 (664)
Q Consensus       497 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~  559 (664)
                      +.++.  .|+...+..+..++...         |++++|+..|++++...+.   +...|..+..+|...        |+
T Consensus       162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---DGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhhccccch
Confidence            99985  57778888999999998         9999999999999876665   678899999999998        99


Q ss_pred             hhHHHHHHHHHHHCCCCC----CHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCCh
Q 006010          560 ISHSIDLLNSMMDRGCDP----DLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQT  635 (664)
Q Consensus       560 ~~~A~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  635 (664)
                      +++|+..|+++.+  +.|    +...+..+...                     |...|++++|.+.++++.+. .+.++
T Consensus       237 ~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~---------------------~~~~g~~~~A~~~~~~al~l-~p~~~  292 (474)
T 4abn_A          237 SQQALSAYAQAEK--VDRKASSNPDLHLNRATL---------------------HKYEESYGEALEGFSQAAAL-DPAWP  292 (474)
T ss_dssp             HHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHH-CTTCH
T ss_pred             HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHH---------------------HHHcCCHHHHHHHHHHHHHh-CCCCH
Confidence            9999999999998  456    33444444433                     99999999999999999986 34467


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHh
Q 006010          636 STWERVVQELCRPKRIQAAINKCWS  660 (664)
Q Consensus       636 ~~~~~l~~~~~~~g~~~~A~~~~~~  660 (664)
                      ..+..+..++...|++++|++.+.+
T Consensus       293 ~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          293 EPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8899999999999999999986554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=3.8e-12  Score=112.10  Aligned_cols=172  Identities=14%  Similarity=0.134  Sum_probs=124.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIH  480 (664)
Q Consensus       401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  480 (664)
                      +...|..+...+...|++++|+..|+++++.. |.+...+..+...|...|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            45566667777777777777777777777654 5566677777777777777777777777776654 445566666777


Q ss_pred             HHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCCh
Q 006010          481 GLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNI  560 (664)
Q Consensus       481 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  560 (664)
                      .+...++++.|...+.+..... +.+...+..+..++.+.|++++|+..|+++++.+|.   +...|..+..+|.+.|++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG---FIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch---hhhHHHHHHHHHHHCCCH
Confidence            7777788888888887777653 334567777788888888888888888888765554   566777888888888888


Q ss_pred             hHHHHHHHHHHHCCCCCCHH
Q 006010          561 SHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       561 ~~A~~~~~~~~~~~~~p~~~  580 (664)
                      ++|+..|+++++  +.|+..
T Consensus       158 ~~A~~~~~~al~--~~p~~a  175 (184)
T 3vtx_A          158 DEAVKYFKKALE--KEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHHH--TTHHHH
T ss_pred             HHHHHHHHHHHh--CCccCH
Confidence            888888888877  566543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=6.1e-13  Score=133.92  Aligned_cols=245  Identities=13%  Similarity=0.047  Sum_probs=149.4

Q ss_pred             CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCC-CC
Q 006010           81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL---EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEF---HCK-RT  153 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~  153 (664)
                      .....+......+...|++++|...|+++....+...   ..++..++..+...|++++|+..|++.+...   +.. ..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3556677778888889999999999988887654321   3467788888888899999998888764421   111 22


Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCC--cCHHHHHHHHHHHHhcCC--------------------hhHH
Q 006010          154 VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNIL--PNTLTFNLVIKTVCRLGL--------------------VDNA  211 (664)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~--------------------~~~A  211 (664)
                      ..++..++..+...|++++|...++++.+..+....  ....++..+...+...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            457778888888888999888888887652111000  013366677777777777                    7777


Q ss_pred             HHHHhhcccC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChhHH
Q 006010          212 IQLFREMPVR----NC-EPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGC-FPT----PVTFNVLINGLCKNGELGRA  281 (664)
Q Consensus       212 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a  281 (664)
                      .+.+++....    +. +....++..+...+...|++++|...+++...... .++    ..++..+...|...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            7776655321    10 11123566666666677777777766666543210 011    22555566666666666666


Q ss_pred             HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010          282 AKLVDNMFLKGCL-PN----EVTYNTLIHGLCLKGNLDKAVSLLDRMVA  325 (664)
Q Consensus       282 ~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  325 (664)
                      ...+++....... ++    ..++..+...+...|++++|...+++..+
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  295 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  295 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            6666665432100 01    23445555555556666666666555543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.50  E-value=1.3e-12  Score=131.74  Aligned_cols=62  Identities=15%  Similarity=0.089  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010          264 TFNVLINGLCKNGELGRAAKLVDNMFLKGCL-PN----EVTYNTLIHGLCLKGNLDKAVSLLDRMVA  325 (664)
Q Consensus       264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  325 (664)
                      ++..+...|...|++++|...+++....... ++    ..++..+...+...|++++|...+++...
T Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  291 (411)
T 4a1s_A          225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA  291 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4555556666666666666666655432100 01    12445555556666666666666655543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=7.1e-13  Score=133.44  Aligned_cols=284  Identities=16%  Similarity=0.073  Sum_probs=170.7

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-C
Q 006010          330 PNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVN---EYIYSTLISGLFKEGKAEDAMKLWKQMMEK----GCKP-N  401 (664)
Q Consensus       330 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~  401 (664)
                      .....+......+...|++++|...++++.+......   ...+..+...+...|++++|...+++....    +-.| .
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3445566667777888888888888888777643311   346677777888888888888888876542    1111 2


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 006010          402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGC-AAN----AFTYSSLMKGFFESGK--------------------GHKA  456 (664)
Q Consensus       402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a  456 (664)
                      ..++..+...+...|++++|...++++.+... ..+    ..++..+...|...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            34566677777778888888888887776420 011    3356666777777777                    7777


Q ss_pred             HHHHHHHHHC----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CcC----HHhHHHHHHHHHHcCCHHHH
Q 006010          457 VEIWKDMAKN----NC-VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-KPD----VVAYSSMIHGLCNAGSVEEA  526 (664)
Q Consensus       457 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A  526 (664)
                      .+.++.....    +. +....++..+...+...|++++|...+++.++... .++    ..++..++..+...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            7777665432    10 11123556666667777777777777776654210 011    12566666677777777777


Q ss_pred             HHHHHHhhhcCCCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhh
Q 006010          527 LKLFNEMLCLEPKSQPD---VFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFL  603 (664)
Q Consensus       527 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~  603 (664)
                      ...+++++...+.....   ..++..+...|...|++++|...++++.+  +.+........              ...+
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~--------------~~~~  310 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA--IAQELNDRIGE--------------GRAC  310 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHH--------------HHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HHHhcCCcHHH--------------HHHH
Confidence            77777775443321111   33555666667777777777777777664  32221110000              1122


Q ss_pred             HHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          604 NELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       604 ~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      ..++.++...|++++|.++++++.+.
T Consensus       311 ~~la~~~~~~g~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          311 WSLGNAYTALGNHDQAMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34555677777777777777777664

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.49  E-value=5.6e-13  Score=130.28  Aligned_cols=271  Identities=13%  Similarity=0.043  Sum_probs=152.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 006010          374 ISGLFKEGKAEDAMKLWKQMMEKGCKPN----TVVYSALIDGLCRVGKPDEAEEILFEMINN----GC-AANAFTYSSLM  444 (664)
Q Consensus       374 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~  444 (664)
                      ...+...|++++|+..++++.+.... +    ...+..+...+...|++++|...++++.+.    +. +.....+..+.
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~   90 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   90 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            33444445555555555544443211 1    133444444455555555555555444321    10 11133444555


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCC--------------------hHHHHHHHHHHH
Q 006010          445 KGFFESGKGHKAVEIWKDMAKNNC-VYN----EVCYSVLIHGLCEDGK--------------------LREARMVWTQML  499 (664)
Q Consensus       445 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~  499 (664)
                      ..|...|++++|.+.+++..+... .++    ..++..+...+...|+                    +++|...+++..
T Consensus        91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~  170 (338)
T 3ro2_A           91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL  170 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            555555666666555555443210 011    2245556666666666                    666666666554


Q ss_pred             hC----CCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          500 SR----GCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP---DVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       500 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      ..    +..+ ...++..+...+...|++++|...+++++...+....   ....+..+...+...|++++|...+++..
T Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  250 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            32    1111 1346777788888888888888888887543221111   12267777788888899999998888877


Q ss_pred             HCCC-CCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc----CCCC-ChHHHHHHHHHh
Q 006010          572 DRGC-DPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK----FLSP-QTSTWERVVQEL  645 (664)
Q Consensus       572 ~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~  645 (664)
                      +... .++......                 .+..++.++...|++++|.++++++.+.    +..+ ....+..++..+
T Consensus       251 ~~~~~~~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  313 (338)
T 3ro2_A          251 LLARQLKDRAVEAQ-----------------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  313 (338)
T ss_dssp             HHHHHTTCHHHHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcchhHHHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            5210 111111111                 1123455588899999999998888764    1111 135677888899


Q ss_pred             cccchHHHHHHHHHhhh
Q 006010          646 CRPKRIQAAINKCWSNL  662 (664)
Q Consensus       646 ~~~g~~~~A~~~~~~~l  662 (664)
                      .+.|++++|.+.+.+.+
T Consensus       314 ~~~g~~~~A~~~~~~a~  330 (338)
T 3ro2_A          314 TALGNHDQAMHFAEKHL  330 (338)
T ss_dssp             HHHTCHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHH
Confidence            99999999998888754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.47  E-value=4.1e-12  Score=126.68  Aligned_cols=234  Identities=10%  Similarity=-0.018  Sum_probs=160.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------CCCHHHHH
Q 006010          408 LIDGLCRVGKPDEAEEILFEMINN----GCAA-NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNC------VYNEVCYS  476 (664)
Q Consensus       408 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~  476 (664)
                      ....+...|++++|...++++.+.    +.++ ...++..+...|...|++++|...+++..+...      +....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            445566778888888888877664    1111 235677777788888888888888877665310      11234677


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhC----CCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC--CC-CCCHhHHH
Q 006010          477 VLIHGLCEDGKLREARMVWTQMLSR----GCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP--KS-QPDVFTYN  548 (664)
Q Consensus       477 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~-~~~~~~~~  548 (664)
                      .+...|...|++++|...+++.++.    +-.+. ..++..++..|...|++++|...+++++....  +. .....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            8888899999999999998887753    11111 24788899999999999999999999864211  11 12355788


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCC---cchHHHHHH
Q 006010          549 ILLNALCKQSNISHSIDLLNSMMDRGCD-PDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQR---TSGGFKIVE  624 (664)
Q Consensus       549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~  624 (664)
                      .+...|.+.|++++|...+++..+.... .+...... +                 ..++.++...|+   +++|..+++
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~-----------------~~l~~~~~~~~~~~~~~~al~~~~  330 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-F-----------------EFLKSLYLSGPDEEAIQGFFDFLE  330 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-H-----------------HHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-H-----------------HHHHHHHhCCCcHHHHHHHHHHHH
Confidence            8889999999999999999998852110 11111111 1                 124445888888   677777776


Q ss_pred             HHHHcCCCC-ChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          625 VMLQKFLSP-QTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       625 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      +.   +..+ ....+..++..+...|++++|.+.+.+.+
T Consensus       331 ~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          331 SK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            65   2232 34677889999999999999999988764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.47  E-value=2.2e-11  Score=117.01  Aligned_cols=218  Identities=11%  Similarity=0.057  Sum_probs=129.5

Q ss_pred             chHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 006010          100 KSLEMVLYRMRREKRVVLEKSFIFIFKAYGK-------AHLV-------EEAIRLFHTMVDEFHCKRTVKSFNSVLNVII  165 (664)
Q Consensus       100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (664)
                      +.|..+|++++... +.+..+|..++..+..       .|++       ++|+..|++.+... .+.+...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence            45666777777654 3356667766666543       3654       67777777765421 2345566777777777


Q ss_pred             HcCCHhHHHHHHHHHHhcccCCCCcC-HH-HHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHH-hcCC
Q 006010          166 QEGLYHRALEFYNHIVNAKHMNILPN-TL-TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLC-KENR  242 (664)
Q Consensus       166 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~  242 (664)
                      +.|++++|..+|+++++     +.|+ .. +|..++..+.+.|++++|+.+|++..+.+ +.+...|........ ..|+
T Consensus       111 ~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~  184 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD  184 (308)
T ss_dssp             HTTCHHHHHHHHHHHHT-----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC
T ss_pred             hcCCHHHHHHHHHHHHh-----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC
Confidence            77777777777777765     2333 22 56666666666777777777777766553 333344433332222 2466


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChHHHHHH
Q 006010          243 LDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKG-CLP--NEVTYNTLIHGLCLKGNLDKAVSL  319 (664)
Q Consensus       243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~a~~~  319 (664)
                      .++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..|  ....|..++......|+.+.|..+
T Consensus       185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~  263 (308)
T 2ond_A          185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV  263 (308)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666665532 2245566666666666666666666666666542 232  344555666666666666666666


Q ss_pred             HHHHHHC
Q 006010          320 LDRMVAS  326 (664)
Q Consensus       320 ~~~~~~~  326 (664)
                      ++++.+.
T Consensus       264 ~~~a~~~  270 (308)
T 2ond_A          264 EKRRFTA  270 (308)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.46  E-value=1.4e-12  Score=125.84  Aligned_cols=244  Identities=14%  Similarity=0.059  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C-CC
Q 006010          404 VYSALIDGLCRVGKPDEAEEILFEMINN-------GCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKN------N-CV  469 (664)
Q Consensus       404 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~  469 (664)
                      ++..+...+...|++++|..+++++.+.       ..+.....+..+...|...|++++|...++++...      + .+
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP  108 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            4444445555555555555555555441       11223344555555566666666666666555442      1 12


Q ss_pred             CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC------CCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC----
Q 006010          470 YNEVCYSVLIHGLCEDGKLREARMVWTQMLSR------GCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP----  538 (664)
Q Consensus       470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----  538 (664)
                      .....+..+...+...|++++|...++++++.      +..| ...++..+...+...|++++|..++++++....    
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  188 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG  188 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence            23445666777777777777777777776653      1122 245677778888888888888888888864310    


Q ss_pred             CCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHh
Q 006010          539 KSQP-DVFTYNILLNALCKQSNISHSIDLLNSMMDR-------GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRL  610 (664)
Q Consensus       539 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~  610 (664)
                      +..| ....+..+...|...|++++|...++++.+.       ...+...........+.              .++..+
T Consensus       189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~  254 (311)
T 3nf1_A          189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE--------------ECKGKQ  254 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHH--------------HC----
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH--------------HhcCch
Confidence            1122 2346777888888889999998888888752       12222222222222211              122336


Q ss_pred             hhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          611 FKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       611 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      ...+.+.++...++..... .+.....+..++.++.+.|++++|++.+.+.+
T Consensus       255 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  305 (311)
T 3nf1_A          255 KDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAM  305 (311)
T ss_dssp             ---CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            6778888888888887753 23355788899999999999999999988765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.45  E-value=1.1e-10  Score=112.02  Aligned_cols=165  Identities=12%  Similarity=0.015  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010          404 VYSALIDGLCRVGKPDEAEEILFEMINNGCAANAF-TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGL  482 (664)
Q Consensus       404 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  482 (664)
                      .|..++..+...|++++|..+|+++++.. +.+.. .|..++..+.+.|++++|..+|++..+.. +.+...|...+...
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~  178 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME  178 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            33334444444444444444444444321 11121 34444444444444444444444444332 12222222222111


Q ss_pred             -HcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC--CHhHHHHHHHHHHHcCC
Q 006010          483 -CEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP--DVFTYNILLNALCKQSN  559 (664)
Q Consensus       483 -~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~  559 (664)
                       ...|++++|..+|++.++.. +-+...|..++..+.+.|++++|..+|++++... ...|  ....|..++..+.+.|+
T Consensus       179 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~l~p~~~~~l~~~~~~~~~~~g~  256 (308)
T 2ond_A          179 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcCC
Confidence             12355555555555544431 1123444445555555555555555555553210 0111  23344555555555555


Q ss_pred             hhHHHHHHHHHHH
Q 006010          560 ISHSIDLLNSMMD  572 (664)
Q Consensus       560 ~~~A~~~~~~~~~  572 (664)
                      .++|..+++++.+
T Consensus       257 ~~~a~~~~~~a~~  269 (308)
T 2ond_A          257 LASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.45  E-value=1.5e-11  Score=122.49  Aligned_cols=230  Identities=7%  Similarity=-0.047  Sum_probs=143.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-----CHHHHH
Q 006010          338 IINGLVKLGRAVDGARVLMSMEER----KFHV-NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK-P-----NTVVYS  406 (664)
Q Consensus       338 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~  406 (664)
                      ....+...|++++|...+.+..+.    +..+ ...++..+...|...|+++.|+..+++..+.... +     ...++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            334455556666666666665442    1111 2345566666666777777777776666542100 1     124566


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 006010          407 ALIDGLCRVGKPDEAEEILFEMINNG----C-AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKN----NC-VYNEVCYS  476 (664)
Q Consensus       407 ~li~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~  476 (664)
                      .+...|...|++++|...++++++..    . .....++..+...|...|++++|.+.+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            66677777777777777777766431    0 011235667777788888888888888777662    22 33455677


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhCCC---CcC-HHhHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCCCCC-CHhHHH
Q 006010          477 VLIHGLCEDGKLREARMVWTQMLSRGC---KPD-VVAYSSMIHGLCNAGS---VEEALKLFNEMLCLEPKSQP-DVFTYN  548 (664)
Q Consensus       477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~  548 (664)
                      .+...+...|++++|...+++.++...   .|. ...+..+...+...|+   +++|..++++.     +..| ....+.
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-----~~~~~~~~~~~  343 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-----MLYADLEDFAI  343 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-----TCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-----cCHHHHHHHHH
Confidence            778888888888888888887765310   111 2234567777777787   77777777766     1222 233566


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHH
Q 006010          549 ILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       549 ~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      .+...|...|++++|...+++..+
T Consensus       344 ~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          344 DVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            777888888888888888888775

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.44  E-value=2e-11  Score=107.43  Aligned_cols=166  Identities=19%  Similarity=0.178  Sum_probs=115.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK  445 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  445 (664)
                      +..+|..+...|.+.|++++|+..|++..+..+. +..++..+..++...|++++|...+..+.... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            4556666777777777777777777777665432 55666667777777777777777777776653 445666666667


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010          446 GFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE  525 (664)
Q Consensus       446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  525 (664)
                      .+...++++.+.+.+....... +.+...+..+...+...|++++|++.|++.++.. +.+..+|..++.+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            7777777777777777776654 4556667777777777777777777777777653 2345677777777777788888


Q ss_pred             HHHHHHHhhh
Q 006010          526 ALKLFNEMLC  535 (664)
Q Consensus       526 A~~~~~~~~~  535 (664)
                      |+..|+++++
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888777754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.44  E-value=3.1e-12  Score=124.91  Aligned_cols=241  Identities=12%  Similarity=0.043  Sum_probs=137.1

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCC-CCHHH
Q 006010           84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL---EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEF---HCK-RTVKS  156 (664)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~~~  156 (664)
                      ..+......+...|++++|...|+++.+..+...   ...+..++..+...|++++|++.+++.+...   +.. ....+
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            3455567788888888888888888887654321   3467788888888888888888888764421   111 22456


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCC--cCHHHHHHHHHHHHhcCC--------------------hhHHHHH
Q 006010          157 FNSVLNVIIQEGLYHRALEFYNHIVNAKHMNIL--PNTLTFNLVIKTVCRLGL--------------------VDNAIQL  214 (664)
Q Consensus       157 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~--------------------~~~A~~~  214 (664)
                      +..+...+...|++++|...+++..+..+....  ....++..+...+...|+                    +++|.+.
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            777888888888888888888887652111100  012366667777777777                    6666666


Q ss_pred             HhhcccC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010          215 FREMPVR----NC-EPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDG-----CFPTPVTFNVLINGLCKNGELGRAAKL  284 (664)
Q Consensus       215 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~  284 (664)
                      +++....    +. +....++..+...+...|++++|...+++.....     ......++..+...+...|++++|...
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6654321    10 1112345555566666666666666666554320     000112444555555555555555555


Q ss_pred             HHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010          285 VDNMFLKGCL-PN----EVTYNTLIHGLCLKGNLDKAVSLLDRMV  324 (664)
Q Consensus       285 ~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~  324 (664)
                      +++....... .+    ..++..+...+...|++++|...+++..
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  290 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  290 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            5554322000 01    2233444444445555555555544443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.43  E-value=6.9e-12  Score=128.14  Aligned_cols=215  Identities=12%  Similarity=-0.026  Sum_probs=150.0

Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010          348 AVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKA-EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILF  426 (664)
Q Consensus       348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  426 (664)
                      ++++...+++...... .+...+..+...+...|++ ++|+..|++..+.... +...|..+..+|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3444444544443322 2556666666677777777 7777777776665322 45667777777777777777777777


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--------CChH
Q 006010          427 EMINNGCAANAFTYSSLMKGFFES---------GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED--------GKLR  489 (664)
Q Consensus       427 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~  489 (664)
                      ++++..  |+...+..+...|...         |++++|++.+++..+.. +.+...|..+..+|...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            777653  4566677777777777         77778888887777765 45667777777777777        7888


Q ss_pred             HHHHHHHHHHhCCCC--cCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 006010          490 EARMVWTQMLSRGCK--PDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLL  567 (664)
Q Consensus       490 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  567 (664)
                      +|...|++.++....  -+...|..+..+|...|++++|...|++++...+.   +...+..+..++...|++++|+..+
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA---WPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888888875210  36678888888888888888888888888766555   5667778888888888888887755


Q ss_pred             HHH
Q 006010          568 NSM  570 (664)
Q Consensus       568 ~~~  570 (664)
                      .++
T Consensus       316 ~~~  318 (474)
T 4abn_A          316 GKT  318 (474)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.40  E-value=1e-12  Score=126.83  Aligned_cols=175  Identities=11%  Similarity=0.093  Sum_probs=132.4

Q ss_pred             CChhHHHHHHHHHHhCCCcchHHHHHHHHHhC-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----
Q 006010           81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRRE-------KRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEF-----  148 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----  148 (664)
                      ....++..+...+...|++++|...++.+.+.       ..+....++..++..|...|++++|++.|++.+...     
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34568888999999999999999999998873       334456678899999999999999999999987641     


Q ss_pred             -CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccC---CC-CcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC--
Q 006010          149 -HCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHM---NI-LPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR--  221 (664)
Q Consensus       149 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--  221 (664)
                       ..+....++..++..+...|++++|...|+++.+....   +. +.....+..+...+...|++++|++.|+++...  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence             22334678889999999999999999999998762100   11 123446777788888888888888888877653  


Q ss_pred             ----C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006010          222 ----N-CEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQV  255 (664)
Q Consensus       222 ----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  255 (664)
                          + .+....++..+...+...|++++|...++++..
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                1 122344677778888888888888888887765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.37  E-value=1.4e-10  Score=115.24  Aligned_cols=233  Identities=8%  Similarity=0.015  Sum_probs=158.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--C---C-CCHHHH
Q 006010          372 TLISGLFKEGKAEDAMKLWKQMMEKGC-KPN----TVVYSALIDGLCRVGKPDEAEEILFEMINNG--C---A-ANAFTY  440 (664)
Q Consensus       372 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~  440 (664)
                      .....+...|++++|+..+++..+... .++    ..++..+...|...|+++.|...+.++.+..  .   . ....++
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            344556678888888888888765311 112    3466677778888888888888888776531  0   1 124566


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHh-----CCCCcCHHhH
Q 006010          441 SSLMKGFFESGKGHKAVEIWKDMAKN----NCV-YNEVCYSVLIHGLCEDGKLREARMVWTQMLS-----RGCKPDVVAY  510 (664)
Q Consensus       441 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~  510 (664)
                      ..+...|...|++++|.+.+++..+.    +.+ ....++..+...|...|++++|...+++.++     .. +....++
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~  264 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL  264 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence            77888888889999888888877652    111 1234677788888999999999999988876     32 2235678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCC-C-CHhHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010          511 SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQ-P-DVFTYNILLNALCKQSN---ISHSIDLLNSMMDRGCDPDLVTCNIF  585 (664)
Q Consensus       511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l  585 (664)
                      ..++..+.+.|++++|...+++++....... + ....+..+...+...|+   +.+|+..+++.   +..|+...+.. 
T Consensus       265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~-  340 (378)
T 3q15_A          265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR-  340 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH-
Confidence            8889999999999999999999876543221 1 22345555566667777   67777777662   22333222221 


Q ss_pred             HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010          586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ  628 (664)
Q Consensus       586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  628 (664)
                                         .++.+|...|++++|.++++++.+
T Consensus       341 -------------------~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          341 -------------------SAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             -------------------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHCCCHHHHHHHHHHHHH
Confidence                               344459999999999999998875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.36  E-value=9e-11  Score=116.60  Aligned_cols=234  Identities=9%  Similarity=-0.076  Sum_probs=170.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----C-CCHHHH
Q 006010          407 ALIDGLCRVGKPDEAEEILFEMINNGC-AA----NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNC-----V-YNEVCY  475 (664)
Q Consensus       407 ~li~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~  475 (664)
                      .....+...|++++|...++++.+... .+    ...++..+...|...|+++.|...+++..+...     . ....++
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            345567789999999999999986521 11    245778889999999999999999998775311     1 124477


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhC----CCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC--CCCCCHhHHH
Q 006010          476 SVLIHGLCEDGKLREARMVWTQMLSR----GCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP--KSQPDVFTYN  548 (664)
Q Consensus       476 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~  548 (664)
                      +.+...|...|++++|.+.+++.++.    +-.+ ...++..++.+|...|++++|...+++++....  +.+....++.
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  265 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence            88999999999999999999988753    1111 135778899999999999999999999964211  1112356788


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCC---cchHHHH
Q 006010          549 ILLNALCKQSNISHSIDLLNSMMDRGC---DPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQR---TSGGFKI  622 (664)
Q Consensus       549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~  622 (664)
                      .+...+.+.|++++|...+++..+...   .|........+                    +..+...|+   +++|..+
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l--------------------~~ly~~~~~~~~~~~al~~  325 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL--------------------QAVYKETVDERKIHDLLSY  325 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH--------------------HHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------HHHHhCCCcHHHHHHHHHH
Confidence            889999999999999999999987422   22222222222                    223777777   7777777


Q ss_pred             HHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          623 VEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      +++..  ..+.....+..++..+...|++++|.+.+.+.+
T Consensus       326 ~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          326 FEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            77631  112234677889999999999999999988764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.34  E-value=3.2e-10  Score=112.44  Aligned_cols=277  Identities=12%  Similarity=-0.029  Sum_probs=177.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH----HHHH
Q 006010          336 GTIINGLVKLGRAVDGARVLMSMEERKFHVNEY----IYSTLISGLFKEGKAEDAMKLWKQMMEKGC-KPNT----VVYS  406 (664)
Q Consensus       336 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~  406 (664)
                      ......+...|++++|...+++........+..    .++.+...+...|++++|...+++...... ..+.    .++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344455667889999999988877754332322    456666778888999999988888765311 1122    2345


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHH
Q 006010          407 ALIDGLCRVGKPDEAEEILFEMINN----GCA--A-NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCV----YNEVCY  475 (664)
Q Consensus       407 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~  475 (664)
                      .+...+...|++++|...+++.++.    +..  + ....+..+...+...|++++|...+++.......    ....++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            5667788889999998888887653    211  2 2345566777888888899888888887764321    123456


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHH-----HHHHHHHHcCCHHHHHHHHHHhhhcCCCCC-CCHhHHH
Q 006010          476 SVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYS-----SMIHGLCNAGSVEEALKLFNEMLCLEPKSQ-PDVFTYN  548 (664)
Q Consensus       476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~  548 (664)
                      ..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|..++++++...++.. .....+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            6777788888888888888888765311111 11121     223446788888888888888843222110 1122456


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH
Q 006010          549 ILLNALCKQSNISHSIDLLNSMMDRGCDP-DLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML  627 (664)
Q Consensus       549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  627 (664)
                      .+...+...|++++|...++++.+..... .....   .              ..+..++.++...|++++|...+++..
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~---~--------------~~~~~la~~~~~~g~~~~A~~~l~~al  320 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDL---N--------------RNLLLLNQLYWQAGRKSDAQRVLLDAL  320 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH---H--------------HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH---H--------------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            66778888888888888888887531111 11111   0              011234556888888888888888887


Q ss_pred             Hc
Q 006010          628 QK  629 (664)
Q Consensus       628 ~~  629 (664)
                      +.
T Consensus       321 ~~  322 (373)
T 1hz4_A          321 KL  322 (373)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.34  E-value=5.5e-10  Score=110.78  Aligned_cols=238  Identities=11%  Similarity=0.015  Sum_probs=116.6

Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH----HHHH
Q 006010           87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVLEK----SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV----KSFN  158 (664)
Q Consensus        87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~  158 (664)
                      ......+...|+++.|...+++.....+..+..    ++..+...+...|++++|.+.+++.........+.    .++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            334455666777777777777766654332222    34555666667777777777777655421111222    2345


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhcccC-CCC--c-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCC----CCCHHHH
Q 006010          159 SVLNVIIQEGLYHRALEFYNHIVNAKHM-NIL--P-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNC----EPDIYTY  230 (664)
Q Consensus       159 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~  230 (664)
                      .+...+...|++++|...+++..+.... +..  | ....+..+...+...|++++|...+++.....-    .....++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            5666666777777777777666542110 110  1 122444455556666666666666665443210    0112345


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHH
Q 006010          231 CTLMDGLCKENRLDEAVLLLDEMQVDGCFP-T-PVTFN----VLINGLCKNGELGRAAKLVDNMFLKGCLP---NEVTYN  301 (664)
Q Consensus       231 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~g~~p---~~~~~~  301 (664)
                      ..+...+...|++++|...+++.......+ . .....    ..+..+...|++++|...+++.......+   ....+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            555555556666666666665544321000 0 11111    12223445555555555555543321110   011233


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHH
Q 006010          302 TLIHGLCLKGNLDKAVSLLDRMV  324 (664)
Q Consensus       302 ~l~~~~~~~g~~~~a~~~~~~~~  324 (664)
                      .+...+...|++++|...+++..
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~  280 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELN  280 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444445555555555554443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.31  E-value=1e-10  Score=124.14  Aligned_cols=165  Identities=17%  Similarity=0.114  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010          402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG  481 (664)
Q Consensus       402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  481 (664)
                      ..+++.+...+.+.|++++|+..|+++++.. +.+...+..+..+|.+.|++++|++.|++..+.. +.+...|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            4456666666666666666666666666653 4455666666666666666666666666666554 3445566666666


Q ss_pred             HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChh
Q 006010          482 LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNIS  561 (664)
Q Consensus       482 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  561 (664)
                      +...|++++|++.|++.++.. +-+..+|..+..+|...|++++|+..|+++++.+++   +...|..+..++...|+++
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~---~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD---FPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHhhhhhHHHhcccHH
Confidence            666666666666666666532 123455666666666666666666666666554444   4555666666666666666


Q ss_pred             HHHHHHHHHHH
Q 006010          562 HSIDLLNSMMD  572 (664)
Q Consensus       562 ~A~~~~~~~~~  572 (664)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.30  E-value=1.5e-10  Score=123.02  Aligned_cols=165  Identities=20%  Similarity=0.132  Sum_probs=150.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK  445 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  445 (664)
                      +...++.+...+.+.|++++|+..|++..+.... +..++..+..+|.+.|++++|+..|+++++.. +.+...+..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            5678999999999999999999999999987533 67889999999999999999999999999875 667899999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc-CHHhHHHHHHHHHHcCCHH
Q 006010          446 GFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP-DVVAYSSMIHGLCNAGSVE  524 (664)
Q Consensus       446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~  524 (664)
                      +|...|++++|++.|++..+.. +.+...|..+...|...|++++|++.|++.++.  .| +...+..++.++...|+++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence            9999999999999999999876 567889999999999999999999999999986  45 4678999999999999999


Q ss_pred             HHHHHHHHhhh
Q 006010          525 EALKLFNEMLC  535 (664)
Q Consensus       525 ~A~~~~~~~~~  535 (664)
                      +|.+.++++++
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999854

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.29  E-value=3.2e-10  Score=99.67  Aligned_cols=163  Identities=13%  Similarity=0.082  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006010          404 VYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLC  483 (664)
Q Consensus       404 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  483 (664)
                      .+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            34444555556666666666666655442 3455556666666666666666666666665543 345556666666666


Q ss_pred             cCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHH
Q 006010          484 EDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHS  563 (664)
Q Consensus       484 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  563 (664)
                      ..|++++|.+.++++.... +.+...+..++..+...|++++|..++++++...+.   +...+..+...+...|++++|
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---EGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCHHHH
Confidence            6677777777776666542 334556666677777777777777777777544332   455666677777777777777


Q ss_pred             HHHHHHHHH
Q 006010          564 IDLLNSMMD  572 (664)
Q Consensus       564 ~~~~~~~~~  572 (664)
                      ...++++.+
T Consensus       164 ~~~~~~~~~  172 (186)
T 3as5_A          164 LPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.29  E-value=6.5e-10  Score=101.52  Aligned_cols=207  Identities=11%  Similarity=-0.047  Sum_probs=147.0

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI  479 (664)
Q Consensus       400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  479 (664)
                      .|+..+......+...|++++|...|+++++...+++...+..+..++...|++++|++.+++..+.. +.+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            35677778888888899999999999988887533677777778888889999999999999888866 44566788888


Q ss_pred             HHHHcCCChHHHHHHHHHHHhCCCCcCH-------HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC---HhHHHH
Q 006010          480 HGLCEDGKLREARMVWTQMLSRGCKPDV-------VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD---VFTYNI  549 (664)
Q Consensus       480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~  549 (664)
                      ..+...|++++|...+++.++.. +.+.       ..|..+...+...|++++|+..|++++.    ..|+   ...|..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~  158 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD----VTSKKWKTDALYS  158 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SSCHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh----cCCCcccHHHHHH
Confidence            88889999999999998888753 2233       4577778888888999999999998853    2333   356666


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       550 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      +..+|...|     ...++++...+ ..+...+....                       ....+.+++|...++++.+.
T Consensus       159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~-----------------------~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK-----------------------AKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHhhc
Confidence            777765543     34455555532 22233332222                       33456689999999999985


Q ss_pred             CCCC-ChHHHHHHHH
Q 006010          630 FLSP-QTSTWERVVQ  643 (664)
Q Consensus       630 ~~~~-~~~~~~~l~~  643 (664)
                        .| ++.+...+..
T Consensus       210 --~p~~~~~~~~l~~  222 (228)
T 4i17_A          210 --SPNRTEIKQMQDQ  222 (228)
T ss_dssp             --CTTCHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHH
Confidence              44 4455544443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.28  E-value=7.8e-10  Score=101.02  Aligned_cols=207  Identities=10%  Similarity=0.043  Sum_probs=129.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK  445 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  445 (664)
                      +...+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++.++.. +.+...+..+..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence            3455666666666777777777777776665433455566666667777777777777777777654 445566667777


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC---HHhHHHHHH
Q 006010          446 GFFESGKGHKAVEIWKDMAKNNCVYNE-------VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD---VVAYSSMIH  515 (664)
Q Consensus       446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~  515 (664)
                      .|...|++++|++.+++..+.. +.+.       ..|..+...+...|++++|.+.|+++++.  .|+   ...+..+..
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence            7777777777777777776654 3333       34666777777888888888888888774  454   356666666


Q ss_pred             HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      +|...     +..+++++......   +...|....  ....+.+++|+..+++..+  +.|+......++..
T Consensus       162 ~~~~~-----~~~~~~~a~~~~~~---~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~  222 (228)
T 4i17_A          162 LFYNN-----GADVLRKATPLASS---NKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQ  222 (228)
T ss_dssp             HHHHH-----HHHHHHHHGGGTTT---CHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHH-----HHHHHHHHHhcccC---CHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence            66543     33445555322211   233333332  2345667888888888887  56766555444443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.27  E-value=3.9e-10  Score=99.12  Aligned_cols=163  Identities=14%  Similarity=0.003  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q 006010          120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVI  199 (664)
Q Consensus       120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll  199 (664)
                      .+..++..+...|++++|++.|+.+...  .+.+...+..++..+...|++++|...++++.+.    .+.+...+..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a   83 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----APDNVKVATVLG   83 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHH
Confidence            4445555566666666666666665432  2334555666666666666666666666666542    112344555555


Q ss_pred             HHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 006010          200 KTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELG  279 (664)
Q Consensus       200 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  279 (664)
                      ..+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  161 (186)
T 3as5_A           84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE  161 (186)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence            55555555666555555554442 3344555555555555555555555555554432 223445555555555555555


Q ss_pred             HHHHHHHHHHH
Q 006010          280 RAAKLVDNMFL  290 (664)
Q Consensus       280 ~a~~~~~~~~~  290 (664)
                      +|...++++..
T Consensus       162 ~A~~~~~~~~~  172 (186)
T 3as5_A          162 EALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.24  E-value=4.5e-11  Score=113.36  Aligned_cols=206  Identities=15%  Similarity=0.047  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC------CC
Q 006010          437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKN------N-CVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR------GC  503 (664)
Q Consensus       437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~  503 (664)
                      ..++..+...|...|++++|...++++.+.      + .+....++..+...+...|++++|...+++++..      .-
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            445566666666667777766666665543      1 1223446677777778888888888887777653      11


Q ss_pred             Cc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcC----CCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC----
Q 006010          504 KP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLE----PKSQP-DVFTYNILLNALCKQSNISHSIDLLNSMMDR----  573 (664)
Q Consensus       504 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----  573 (664)
                      .| ...++..+...+...|++++|..++++++...    .+..| ....+..+...|...|++++|...++++.+.    
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            12 34677788888888899999998888886431    01122 3456778888889999999999999888852    


Q ss_pred             ---CCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchH------HHHHHHHHHcCCCCChHHHHHHHHH
Q 006010          574 ---GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGG------FKIVEVMLQKFLSPQTSTWERVVQE  644 (664)
Q Consensus       574 ---~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~~~~~~~~~~~~~~~~l~~~  644 (664)
                         ...+....+...+..+                    +...+....+      ...++.... ..+.....+..++..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~  261 (283)
T 3edt_B          203 EFGSVNGDNKPIWMHAEER--------------------EESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGAL  261 (283)
T ss_dssp             HSSSCCSSCCCHHHHHHHH--------------------HHTTCCCCC------------CCCC-CCHHHHHHHHHHHHH
T ss_pred             cCCCcchhHHHHHHHHHHH--------------------HhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence               1222222222222221                    2222222222      222222111 011234678888999


Q ss_pred             hcccchHHHHHHHHHhhhc
Q 006010          645 LCRPKRIQAAINKCWSNLY  663 (664)
Q Consensus       645 ~~~~g~~~~A~~~~~~~l~  663 (664)
                      +...|++++|.+.+.+.+.
T Consensus       262 ~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          262 YRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            9999999999999887653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.21  E-value=1.7e-10  Score=109.25  Aligned_cols=231  Identities=11%  Similarity=0.014  Sum_probs=145.0

Q ss_pred             hCCCcchHHHHHHHHHh-------CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC------CCCCCHHHHHHHH
Q 006010           95 NSGDFKSLEMVLYRMRR-------EKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEF------HCKRTVKSFNSVL  161 (664)
Q Consensus        95 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~  161 (664)
                      ..|+++.|...++++..       .+.+....++..++..|...|++++|+..|++.++..      ..+....++..++
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            34555666555555554       2323345567788888888888888888888876541      1233456788888


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcccC---C-CCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC------C-CCCCHHHH
Q 006010          162 NVIIQEGLYHRALEFYNHIVNAKHM---N-ILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR------N-CEPDIYTY  230 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~  230 (664)
                      ..+...|++++|...|+++.+....   . .+....++..+...+...|++++|.+.|++..+.      + .+....++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            8888888888888888887662100   0 1123457777888888888888888888887654      1 12235577


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHH------HHHHHHHcCCCCC
Q 006010          231 CTLMDGLCKENRLDEAVLLLDEMQVD-------GCFPT-PVTFNVLINGLCKNGELGRAAK------LVDNMFLKGCLPN  296 (664)
Q Consensus       231 ~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~-~~~~~~li~~~~~~g~~~~a~~------~~~~~~~~g~~p~  296 (664)
                      ..+..+|...|++++|...++++...       ...+. ...|..+...+...+....+..      .++.... ..+..
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  251 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV  251 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence            88888888999999999888887653       11122 2233333333333333222222      2221110 11123


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010          297 EVTYNTLIHGLCLKGNLDKAVSLLDRMVAS  326 (664)
Q Consensus       297 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  326 (664)
                      ..++..+...|...|++++|..++++..+.
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456778888999999999999999887753

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.20  E-value=1.3e-09  Score=103.69  Aligned_cols=201  Identities=13%  Similarity=0.048  Sum_probs=120.3

Q ss_pred             HHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHH
Q 006010          377 LFKEGKAEDAMKLWKQMMEK----GCKP-NTVVYSALIDGLCRVGKPDEAEEILFEMINN----GCAA-NAFTYSSLMKG  446 (664)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~  446 (664)
                      |...|++++|+..|++..+.    |-.+ ...+|..+..+|...|++++|+..+++.++.    |... ...++..+...
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  126 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI  126 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44455555555555544332    1111 1234555555666666666666666655442    1000 13456677777


Q ss_pred             HHhc-CChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH------HhHHHHH
Q 006010          447 FFES-GKGHKAVEIWKDMAKNNCVY-N----EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV------VAYSSMI  514 (664)
Q Consensus       447 ~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~  514 (664)
                      |... |++++|+..+++..+..... +    ..++..+...+...|++++|+..|++..+.......      ..|..++
T Consensus       127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  206 (292)
T 1qqe_A          127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG  206 (292)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            8885 88888888888776632111 1    346778888899999999999999998875322211      1567778


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhcCCCCCCC--HhHHHHHHHHHH--HcCChhHHHHHHHHHHHCCCCCCH
Q 006010          515 HGLCNAGSVEEALKLFNEMLCLEPKSQPD--VFTYNILLNALC--KQSNISHSIDLLNSMMDRGCDPDL  579 (664)
Q Consensus       515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~  579 (664)
                      .++...|++++|...|++++...+.....  ...+..++.++.  ..+++++|+..|+++..  +.|+.
T Consensus       207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~  273 (292)
T 1qqe_A          207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWK  273 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHH
Confidence            88889999999999999997555543221  113344555554  34567888888877654  45544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.18  E-value=1.9e-08  Score=93.20  Aligned_cols=187  Identities=10%  Similarity=0.026  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010          386 AMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGC-AANAFTYSSLMKGFFESGKGHKAVEIWKDMA  464 (664)
Q Consensus       386 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  464 (664)
                      |+..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.++.|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            667777766554 34555556777778888888888888888876642 2466777788888888888888888888887


Q ss_pred             HCCCCC-----CHHHHHHHHHH--HHc--CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010          465 KNNCVY-----NEVCYSVLIHG--LCE--DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC  535 (664)
Q Consensus       465 ~~~~~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (664)
                      +..  |     +..+...++.+  ...  .++..+|..+|+++.+.  .|+..+...++.++.+.|++++|.+.++.+++
T Consensus       164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            754  4     24444444444  222  34888899999988764  45533334444478888999999999887643


Q ss_pred             cCCCC-------CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010          536 LEPKS-------QPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT  581 (664)
Q Consensus       536 ~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  581 (664)
                      ..+..       ..|..++..++......|+  +|.+++.++.+  ..|+...
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~  288 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAF  288 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChH
Confidence            32110       2255566556656666676  78888888887  6677653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.17  E-value=6.4e-08  Score=98.54  Aligned_cols=358  Identities=9%  Similarity=-0.013  Sum_probs=197.3

Q ss_pred             CCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCC-hhHHHHHHhhcccC-CC-CCCHHHHHHHHHHHH----hc
Q 006010          168 GLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGL-VDNAIQLFREMPVR-NC-EPDIYTYCTLMDGLC----KE  240 (664)
Q Consensus       168 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~  240 (664)
                      |+++.+..+|++.+.     ..|+...|...+....+.++ .+....+|+..... |. +.+...|...+..+.    ..
T Consensus        28 ~~~e~~~~iferal~-----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~  102 (493)
T 2uy1_A           28 KDYRSLESLFGRCLK-----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ  102 (493)
T ss_dssp             TCHHHHHHHHHHHST-----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred             CCHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence            667777777777765     23566666666666655553 34455566555432 21 234556666665443    23


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006010          241 NRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLL  320 (664)
Q Consensus       241 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~  320 (664)
                      |+.+.+..+|++........-...|......- +......+..++.+.                     .+.+..|..++
T Consensus       103 ~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~---------------------~~~y~~ar~~y  160 (493)
T 2uy1_A          103 TRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDT---------------------LPIFQSSFQRY  160 (493)
T ss_dssp             HHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHH---------------------hHHHHHHHHHH
Confidence            45666666777666531111111222221111 111111122222111                     11223334444


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhcC--C-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010          321 DRMVASKCMPNEVTYGTIINGLVKLG--R-----AVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQM  393 (664)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  393 (664)
                      +.+...--..+...|...+..-...+  -     .+.+..+++++....+. +...|...+..+.+.|+.+.|..++++.
T Consensus       161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erA  239 (493)
T 2uy1_A          161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERG  239 (493)
T ss_dssp             HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            43332100012334544444322211  0     23455677777765433 5677777777788888888888888888


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------------CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006010          394 MEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG------------CAANAFTYSSLMKGFFESGKGHKAVEIWK  461 (664)
Q Consensus       394 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  461 (664)
                      ...  +.+...+.    .|....+.++.   ++.+.+.-            .......|...+....+.++.+.|..+|+
T Consensus       240 i~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~  310 (493)
T 2uy1_A          240 IEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI  310 (493)
T ss_dssp             HHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            877  22322222    22222122222   22222110            01112456667777777888999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC
Q 006010          462 DMAKNNCVYNEVCYSVLIHGLCE-DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS  540 (664)
Q Consensus       462 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  540 (664)
                      ++ ... ..+...|...+..-.. .++.+.|..+|+..++.. +-+...|...++...+.|+.+.|..+|+++  .    
T Consensus       311 ~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~--~----  381 (493)
T 2uy1_A          311 EL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL--E----  381 (493)
T ss_dssp             HH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS--C----
T ss_pred             Hh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--H----
Confidence            99 322 2344445433322222 336999999999998753 223455667788788899999999999998  2    


Q ss_pred             CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          541 QPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       541 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                       .....|...+..-...|+.+.+..+++++.+
T Consensus       382 -k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          382 -KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             -CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             1567888888877888999999999988874

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.16  E-value=6.8e-08  Score=98.36  Aligned_cols=124  Identities=12%  Similarity=0.101  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010          403 VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES-GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG  481 (664)
Q Consensus       403 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  481 (664)
                      ..|...+....+.++.+.|..+|+.+ +.. ..+...|...+..-... ++.+.|..+|+...+.. +.+...+...+..
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~  363 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            45666666666777889999999888 322 23444454333322223 36899999999888754 3345556667777


Q ss_pred             HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010          482 LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEML  534 (664)
Q Consensus       482 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (664)
                      ....|+.+.|..+|+.+.     .....|...+..-...|+.+.+..++++++
T Consensus       364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            778899999999998873     246778888887788899999999888885

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.14  E-value=2.8e-09  Score=99.60  Aligned_cols=195  Identities=12%  Similarity=0.063  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CcC-HHhHH
Q 006010          437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN---EVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-KPD-VVAYS  511 (664)
Q Consensus       437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~  511 (664)
                      ...+..+...+.+.|++++|+..|+.+.+.. |.+   ...+..+..++...|++++|...|+++++... .|. ..++.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            3444444444555555555555555554433 112   33444455555555555555555555554311 111 23344


Q ss_pred             HHHHHHHH--------cCCHHHHHHHHHHhhhcCCCCCCCHhH--------------HHHHHHHHHHcCChhHHHHHHHH
Q 006010          512 SMIHGLCN--------AGSVEEALKLFNEMLCLEPKSQPDVFT--------------YNILLNALCKQSNISHSIDLLNS  569 (664)
Q Consensus       512 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~  569 (664)
                      .+..++..        .|++++|+..|++++...|+...-...              +..+...|.+.|++++|+..|++
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  173 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA  173 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            44555555        555566666655554433331111111              25667889999999999999999


Q ss_pred             HHHCCCCCCHH----HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhc----------CCcchHHHHHHHHHHcCCCCCh
Q 006010          570 MMDRGCDPDLV----TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKR----------QRTSGGFKIVEVMLQKFLSPQT  635 (664)
Q Consensus       570 ~~~~~~~p~~~----~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~  635 (664)
                      +++  ..|+..    .+..+...                     |...          |++++|...++++.+.  .|+.
T Consensus       174 ~l~--~~p~~~~~~~a~~~l~~~---------------------~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~  228 (261)
T 3qky_A          174 VFD--AYPDTPWADDALVGAMRA---------------------YIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS  228 (261)
T ss_dssp             HHH--HCTTSTTHHHHHHHHHHH---------------------HHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred             HHH--HCCCCchHHHHHHHHHHH---------------------HHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence            997  345422    22222222                     5544          8999999999999985  3433


Q ss_pred             ----HHHHHHHHHhcccchHHHHHHH
Q 006010          636 ----STWERVVQELCRPKRIQAAINK  657 (664)
Q Consensus       636 ----~~~~~l~~~~~~~g~~~~A~~~  657 (664)
                          .....+...+...|+++++...
T Consensus       229 ~~~~~a~~~l~~~~~~~~~~~~~~~~  254 (261)
T 3qky_A          229 PLLRTAEELYTRARQRLTELEGDASL  254 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence                4455566666777777665543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.14  E-value=2.1e-09  Score=100.42  Aligned_cols=193  Identities=10%  Similarity=0.012  Sum_probs=122.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN---TVVYSALIDGLCRVGKPDEAEEILFEMINNGC--AANAFTY  440 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~  440 (664)
                      +...+..+...+.+.|++++|+..|+++.+.... +   ...+..+..++...|++++|...|+.+++...  +.....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            4555666666777777777777777777765322 2   45566666677777777777777777776421  1223455


Q ss_pred             HHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH
Q 006010          441 SSLMKGFFE--------SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS  512 (664)
Q Consensus       441 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  512 (664)
                      ..+..++..        .|++++|+..|+++.+.. |.+......+.              .+..+...    -...+..
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~--------------~~~~~~~~----~~~~~~~  153 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQ--------------KIRELRAK----LARKQYE  153 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHH--------------HHHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHH--------------HHHHHHHH----HHHHHHH
Confidence            556666666        667777777777666644 11222111111              11111000    0112466


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc----------CChhHHHHHHHHHHHCCCCCCHH
Q 006010          513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ----------SNISHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~  580 (664)
                      ++..|...|++++|+..|++++...|........+..+..+|...          |++++|...++++++  ..|+..
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~  229 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDSP  229 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTCT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCCh
Confidence            788899999999999999999876665444456777888888766          889999999999997  456654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.10  E-value=2.3e-09  Score=96.04  Aligned_cols=138  Identities=12%  Similarity=0.151  Sum_probs=92.8

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH
Q 006010          477 VLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK  556 (664)
Q Consensus       477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  556 (664)
                      .+..++...|++++|...|++.++.. +-+...+..+..++...|++++|+..|++++..+|.   +...|..+..+|..
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~  134 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHH
Confidence            37778888888888888888888753 235677888888888888888888888888776665   66778788777765


Q ss_pred             cCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCC
Q 006010          557 QSN--ISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQ  634 (664)
Q Consensus       557 ~g~--~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  634 (664)
                      .|+  .+.+...+++..    .|+...+.....                   +.++...|++++|...|+++++  +.|+
T Consensus       135 ~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~-------------------g~~~~~~~~~~~A~~~~~~al~--l~P~  189 (208)
T 3urz_A          135 TAEQEKKKLETDYKKLS----SPTKMQYARYRD-------------------GLSKLFTTRYEKARNSLQKVIL--RFPS  189 (208)
T ss_dssp             HHHHHHHHHHHHHC-------CCCHHHHHHHHH-------------------HHHHHHHHTHHHHHHHHHHHTT--TSCC
T ss_pred             HhHHHHHHHHHHHHHHh----CCCchhHHHHHH-------------------HHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence            543  344555555543    344333221111                   1226678888889999988886  4677


Q ss_pred             hHHHHHHHH
Q 006010          635 TSTWERVVQ  643 (664)
Q Consensus       635 ~~~~~~l~~  643 (664)
                      ......+.+
T Consensus       190 ~~~~~~l~~  198 (208)
T 3urz_A          190 TEAQKTLDK  198 (208)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            655444433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.06  E-value=1.5e-07  Score=87.21  Aligned_cols=180  Identities=9%  Similarity=0.066  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010          281 AAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKC-MPNEVTYGTIINGLVKLGRAVDGARVLMSME  359 (664)
Q Consensus       281 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  359 (664)
                      |+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344444443332 22333334444455555555555555555443321 1133344444455555555555555555554


Q ss_pred             HcCCCC-----CHHHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010          360 ERKFHV-----NEYIYSTLISG--LFKEG--KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMIN  430 (664)
Q Consensus       360 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  430 (664)
                      +.  .|     +..+...++.+  ....|  ++++|..+|+++.+.  .|+..+...++.++.+.|++++|...++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            43  12     12333333333  11122  555555555555443  22322222233355555666666655554433


Q ss_pred             CC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010          431 NG---------CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN  467 (664)
Q Consensus       431 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  467 (664)
                      ..         -+.++.++..++......|+  +|.++++++.+..
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            10         02344444344444444444  4555555555543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.05  E-value=6.3e-09  Score=98.85  Aligned_cols=97  Identities=7%  Similarity=0.090  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHH
Q 006010           86 FYSLIQHYANSGDFKSLEMVLYRMRRE----KRVV-LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT----VKS  156 (664)
Q Consensus        86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~  156 (664)
                      |...+..+...|++++|...|.++...    +.+. ...++..+..+|...|++++|+..|++.+.......+    ..+
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  119 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            333344555555566555555555432    1111 1234555555555555555555555554432111111    234


Q ss_pred             HHHHHHHHHHc-CCHhHHHHHHHHHHh
Q 006010          157 FNSVLNVIIQE-GLYHRALEFYNHIVN  182 (664)
Q Consensus       157 ~~~l~~~~~~~-~~~~~A~~~~~~~~~  182 (664)
                      ++.+...|... |++++|+..|++.++
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            44455555553 555555555555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.04  E-value=1.3e-08  Score=91.00  Aligned_cols=171  Identities=11%  Similarity=0.095  Sum_probs=98.2

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhh
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIF----------------IFKAYGKAHLVEEAIRLFHTMV  145 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~  145 (664)
                      +...+......+...|++++|...|+.+...++. +..++..                ++.+|.+.|++++|+..|++.+
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   81 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL   81 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3445566666777888888888888888776532 4445555                6666667777777777776665


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCC--hhHHHHHHhhcccCC
Q 006010          146 DEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGL--VDNAIQLFREMPVRN  222 (664)
Q Consensus       146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~  222 (664)
                      +.  .|.++..+..++..+...|++++|...|+++++.     .| +..++..+..+|...|+  .+.+...++..... 
T Consensus        82 ~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-  153 (208)
T 3urz_A           82 QK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP-  153 (208)
T ss_dssp             HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-
T ss_pred             HH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC-
Confidence            54  3445666666677777777777777777776662     22 34455555555544432  33344445444321 


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 006010          223 CEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVT  264 (664)
Q Consensus       223 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  264 (664)
                       .|....+..+..++...|++++|...|++..+.  .|+...
T Consensus       154 -~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~  192 (208)
T 3urz_A          154 -TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA  192 (208)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred             -CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence             222223333444455556666666666666553  355433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.03  E-value=1.6e-09  Score=91.15  Aligned_cols=144  Identities=12%  Similarity=0.005  Sum_probs=99.1

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH
Q 006010          478 LIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK  556 (664)
Q Consensus       478 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  556 (664)
                      |...+...|++++|++.++.....  .|+ ...+..+...|.+.|++++|++.|+++++.+|.   +...|..+..+|.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~   77 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLLYEL   77 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence            344455667788888888877653  343 345667788888888888888888888776665   67788888888888


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHH-HHHHHHcCCCCC
Q 006010          557 QSNISHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKI-VEVMLQKFLSPQ  634 (664)
Q Consensus       557 ~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~  634 (664)
                      .|++++|+..|+++++  +.|+... +..+...                     |.+.|++++|.+. ++++.+. .+.+
T Consensus        78 ~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~---------------------~~~~~~~~~aa~~~~~~al~l-~P~~  133 (150)
T 4ga2_A           78 EENTDKAVECYRRSVE--LNPTQKDLVLKIAEL---------------------LCKNDVTDGRAKYWVERAAKL-FPGS  133 (150)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH---------------------HHHHCSSSSHHHHHHHHHHHH-STTC
T ss_pred             cCchHHHHHHHHHHHH--hCCCCHHHHHHHHHH---------------------HHHcCChHHHHHHHHHHHHHh-CcCC
Confidence            8888888888888887  5665433 3333333                     7888888776654 5777764 2345


Q ss_pred             hHHHHHHHHHhcccch
Q 006010          635 TSTWERVVQELCRPKR  650 (664)
Q Consensus       635 ~~~~~~l~~~~~~~g~  650 (664)
                      +.+|......+...|+
T Consensus       134 ~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          134 PAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            6777776766666653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.01  E-value=3e-09  Score=113.67  Aligned_cols=174  Identities=9%  Similarity=-0.054  Sum_probs=132.6

Q ss_pred             HhcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006010          378 FKEGKAEDAMKLWKQMM--------EKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFE  449 (664)
Q Consensus       378 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  449 (664)
                      ...|++++|++.+++..        +.. +.+...+..+...+...|++++|...|+++++.. +.+...+..+..+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            67888888988888887        332 2355677778888888899999999998888764 5577888888888888


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHH
Q 006010          450 SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKL  529 (664)
Q Consensus       450 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  529 (664)
                      .|++++|++.|++..+.. +.+...+..+..++...|++++ .+.|+++++.. +.+...|..+..++.+.|++++|+..
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999888876 4566778888888888999988 88888888753 23467788888889999999999999


Q ss_pred             HHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010          530 FNEMLCLEPKSQPDVFTYNILLNALCKQSN  559 (664)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  559 (664)
                      |+++++.++.   +...|..+..++...|+
T Consensus       557 ~~~al~l~P~---~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRH---FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTT---HHHHHHHHHHHTC----
T ss_pred             HHhhcccCcc---cHHHHHHHHHHHHccCC
Confidence            9888543332   35566667777655444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.01  E-value=1.4e-08  Score=83.43  Aligned_cols=127  Identities=17%  Similarity=0.299  Sum_probs=66.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc
Q 006010          441 SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA  520 (664)
Q Consensus       441 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  520 (664)
                      ..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..++..+...
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence            344444555555555555555554433 2344445555555555555555555555555432 22344555555555666


Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          521 GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       521 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      |++++|..++++++...+.   +...+..+...+...|++++|...++++.+
T Consensus        83 ~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            6666666666655433222   344555555566666666666666666554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.01  E-value=2.5e-07  Score=86.89  Aligned_cols=234  Identities=10%  Similarity=0.061  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCh
Q 006010          383 AEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG--KPDEAEEILFEMINNGCAANAFTYSSLMKGF----FES---GKG  453 (664)
Q Consensus       383 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~  453 (664)
                      .++|+..++.++..+.. +..+|+.-...+...|  +++++++.++.++... +.+..+|+.-...+    ...   +++
T Consensus        49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence            34566666666655322 3344555555555555  6666666666666543 33444443332222    333   566


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH--HHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCC------HHH
Q 006010          454 HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR--EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGS------VEE  525 (664)
Q Consensus       454 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~  525 (664)
                      ++++++++.+.+.. +.+..+|+.-...+...|.++  ++++.++++++.. .-|...|+.....+.+.|.      +++
T Consensus       127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence            77777777776655 556666666666666666666  7777777777654 2355666666666655555      777


Q ss_pred             HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhH-HHHHHHHHHHCC-CCCC-HHHHHHHHHhhhhhccCCCCchhh
Q 006010          526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH-SIDLLNSMMDRG-CDPD-LVTCNIFLTALKEKLEAPQDGTDF  602 (664)
Q Consensus       526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~~~~~~  602 (664)
                      +++.+++++..++.   |...|+.+...+.+.|+..+ +..+..++.+.+ ..|. ...+..                  
T Consensus       205 El~~~~~aI~~~p~---n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~------------------  263 (306)
T 3dra_A          205 ELNYVKDKIVKCPQ---NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALET------------------  263 (306)
T ss_dssp             HHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHH------------------
T ss_pred             HHHHHHHHHHhCCC---CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHH------------------
Confidence            77777777766655   77777777777777776433 445556555422 1122 222222                  


Q ss_pred             hHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHH
Q 006010          603 LNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQE  644 (664)
Q Consensus       603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  644 (664)
                         ++.++.+.|+.++|.++++.+.++--+.....|...+..
T Consensus       264 ---la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          264 ---LAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             ---HHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             ---HHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence               223367777888888888887754223344566655544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.01  E-value=3.9e-09  Score=112.84  Aligned_cols=160  Identities=12%  Similarity=0.046  Sum_probs=117.4

Q ss_pred             HhcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 006010          413 CRVGKPDEAEEILFEMI--------NNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE  484 (664)
Q Consensus       413 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  484 (664)
                      ...|++++|++.+++++        +.. +.+...+..+...+...|++++|++.++++.+.+ +.+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            66788888888888877        432 4556677777778888888888888888877765 4566777777778888


Q ss_pred             CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHH
Q 006010          485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSI  564 (664)
Q Consensus       485 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  564 (664)
                      .|++++|.+.|+++++.. +-+...+..+..++.+.|++++ +..|+++++.++.   +...|..+..++.+.|++++|+
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG---VISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc---hHHHHHHHHHHHHHcCCHHHHH
Confidence            888888888888877652 2235667777778888888888 8888888765554   5667777778888888888888


Q ss_pred             HHHHHHHHCCCCCCHHH
Q 006010          565 DLLNSMMDRGCDPDLVT  581 (664)
Q Consensus       565 ~~~~~~~~~~~~p~~~~  581 (664)
                      ..|+++.+  +.|+...
T Consensus       555 ~~~~~al~--l~P~~~~  569 (681)
T 2pzi_A          555 RTLDEVPP--TSRHFTT  569 (681)
T ss_dssp             HHHHTSCT--TSTTHHH
T ss_pred             HHHHhhcc--cCcccHH
Confidence            88887776  5666443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.00  E-value=2.9e-08  Score=90.11  Aligned_cols=186  Identities=11%  Similarity=0.045  Sum_probs=129.7

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVV--LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV-KSFN  158 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~  158 (664)
                      ++..+..+...+...|++++|...|+.+....+..  ...++..++.+|.+.|++++|+..|+++++..+..+.. .++.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            56678888899999999999999999999865432  24678889999999999999999999998765444442 3555


Q ss_pred             HHHHHHHH------------------cCCHhHHHHHHHHHHhcccCCCCcCHH-HHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010          159 SVLNVIIQ------------------EGLYHRALEFYNHIVNAKHMNILPNTL-TFNLVIKTVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       159 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~  219 (664)
                      .++.++.+                  .|++++|...|+++++.     .|+.. ........    +      .+...+ 
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l----~------~~~~~~-  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRL----V------FLKDRL-  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHH----H------HHHHHH-
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHH----H------HHHHHH-
Confidence            56666554                  45677777777777762     23221 11111100    0      000000 


Q ss_pred             cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010          220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT----PVTFNVLINGLCKNGELGRAAKLVDNMFLKG  292 (664)
Q Consensus       220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g  292 (664)
                             ......+...|.+.|++++|+..|+++.+..  |+    ...+..+..+|.+.|++++|.+.++.+...+
T Consensus       147 -------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 -------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                   1122356778888999999999999988753  33    2567788889999999999999999887764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.99  E-value=2.9e-08  Score=81.53  Aligned_cols=128  Identities=16%  Similarity=0.247  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 006010          405 YSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE  484 (664)
Q Consensus       405 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  484 (664)
                      +..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            3444555555566666666666555543 3345555555666666666666666666665544 3445556666666666


Q ss_pred             CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010          485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC  535 (664)
Q Consensus       485 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (664)
                      .|++++|...++++.... +.+...+..++..+...|++++|...+++++.
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            777777777776666542 23455666666677777777777777776643

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.99  E-value=5e-07  Score=84.80  Aligned_cols=227  Identities=10%  Similarity=0.012  Sum_probs=144.1

Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CChh
Q 006010          349 VDGARVLMSMEERKFHVNEYIYSTLISGLFKEG--KAEDAMKLWKQMMEKGCKPNTVVYSALIDGL----CRV---GKPD  419 (664)
Q Consensus       349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~  419 (664)
                      ++|++..+.+...++. +..+|+.-..++...+  ++++++..++.+.....+ +..+|+.-...+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence            4566666666665444 4555665555555566  677777777766665433 344444433333    333   5677


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC------hHHH
Q 006010          420 EAEEILFEMINNGCAANAFTYSSLMKGFFESGKGH--KAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGK------LREA  491 (664)
Q Consensus       420 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A  491 (664)
                      +++.+++.+++.. +.+..+|+.-.-.+.+.|.++  ++++.++.+.+.+ +-|...|+.-...+...++      ++++
T Consensus       128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence            7777777777654 556666666666666666666  7777777777765 4566677666666666665      7788


Q ss_pred             HHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHH-HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006010          492 RMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVE-EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSM  570 (664)
Q Consensus       492 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  570 (664)
                      ++.+++++... +-|...|+.+...+.+.|+.. ++..+.++++........+...+..+...|.+.|+.++|+++++.+
T Consensus       206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            88888887753 345677877777777777743 3555666664322112335667778888888888888888888888


Q ss_pred             HHCCCCCCHHH
Q 006010          571 MDRGCDPDLVT  581 (664)
Q Consensus       571 ~~~~~~p~~~~  581 (664)
                      .+. +.|...-
T Consensus       285 ~~~-~Dpir~~  294 (306)
T 3dra_A          285 KSK-YNPIRSN  294 (306)
T ss_dssp             HHT-TCGGGHH
T ss_pred             Hhc-cChHHHH
Confidence            753 4554433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.97  E-value=9.1e-08  Score=85.76  Aligned_cols=177  Identities=14%  Similarity=0.045  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 006010          385 DAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESG----KGHKAVEIW  460 (664)
Q Consensus       385 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~  460 (664)
                      +|+..|++..+.|   +...+..+...|...+++++|...|++..+.+   +...+..|...|.. +    ++++|.+.|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            4566666666654   56666677777777778888888887777765   56666667777766 5    778888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCC-cCHHhHHHHHHHHHH----cCCHHHHHHHHH
Q 006010          461 KDMAKNNCVYNEVCYSVLIHGLCE----DGKLREARMVWTQMLSRGCK-PDVVAYSSMIHGLCN----AGSVEEALKLFN  531 (664)
Q Consensus       461 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~  531 (664)
                      ++..+.+   +...+..+...|..    .+++++|...|++..+.|.. .+...+..|...|..    .+++++|..+|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            8877643   55666677777766    77888888888888876521 125677778888877    778888888888


Q ss_pred             HhhhcCCCCCCCHhHHHHHHHHHHHc-C-----ChhHHHHHHHHHHHCCC
Q 006010          532 EMLCLEPKSQPDVFTYNILLNALCKQ-S-----NISHSIDLLNSMMDRGC  575 (664)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~  575 (664)
                      ++... ++   +...+..|...|... |     ++++|..+|++..+.|.
T Consensus       154 ~A~~~-~~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          154 GSSSL-SR---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHT-SC---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHc-CC---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            88532 12   444666677777653 3     78889998888887653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.97  E-value=3e-09  Score=89.46  Aligned_cols=132  Identities=8%  Similarity=-0.036  Sum_probs=89.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCH
Q 006010          444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSV  523 (664)
Q Consensus       444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  523 (664)
                      ...+...|++++|+..++...... +.+...+-.+...|...|++++|.+.|++.++.. +-+..+|..+..+|...|++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence            344555667777777777765533 2233445567777788888888888888877753 23466777888888888888


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHH-HHHHHHCCCCCCHHHH
Q 006010          524 EEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDL-LNSMMDRGCDPDLVTC  582 (664)
Q Consensus       524 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~  582 (664)
                      ++|+..|+++++.+|.   +...|..+...|.+.|++++|... ++++.+  +.|+....
T Consensus        82 ~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~  136 (150)
T 4ga2_A           82 DKAVECYRRSVELNPT---QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAV  136 (150)
T ss_dssp             HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHH
T ss_pred             HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHH
Confidence            8888888888766554   566777778888888887766554 477776  56665443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.96  E-value=4.8e-08  Score=88.66  Aligned_cols=190  Identities=9%  Similarity=-0.025  Sum_probs=128.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCH-HH
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNT-LT  194 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~  194 (664)
                      +...+..++..+...|++++|+..|++++...+..+. ..++..++.++.+.|++++|+..|+++++..+..  +.. ..
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~--~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--PNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--CcHHHH
Confidence            4556778888899999999999999999876443333 4678889999999999999999999998743221  111 23


Q ss_pred             HHHHHHHHHh------------------cCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006010          195 FNLVIKTVCR------------------LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVD  256 (664)
Q Consensus       195 ~~~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  256 (664)
                      +..+..++..                  .|++++|...|+++.+.. +.+...+.......          .+...+.  
T Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~--  147 (225)
T 2yhc_A           81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA--  147 (225)
T ss_dssp             HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH--
T ss_pred             HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH--
Confidence            4444444443                  355666666666665542 22222222111100          0000000  


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010          257 GCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN--EVTYNTLIHGLCLKGNLDKAVSLLDRMVASK  327 (664)
Q Consensus       257 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  327 (664)
                            .....+...|.+.|++++|+..|+++.+..+...  ...+..+..++.+.|+.++|.+.++.+...+
T Consensus       148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                  1123467788999999999999999988733211  2568889999999999999999999998874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.96  E-value=1.2e-08  Score=88.60  Aligned_cols=53  Identities=13%  Similarity=0.141  Sum_probs=20.7

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006010          126 KAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHI  180 (664)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  180 (664)
                      ..+...|++++|+..|++.++.  .+.+...+..+...+.+.|++++|...|+.+
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a   66 (176)
T 2r5s_A           14 SELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATI   66 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            3333444444444444433322  1223333444444444444444444444433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.94  E-value=2.6e-08  Score=94.16  Aligned_cols=162  Identities=16%  Similarity=0.084  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHH-H
Q 006010          155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCT-L  233 (664)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l  233 (664)
                      ..+..+...+.+.|++++|...|+++++..+    .+...+..+..++.+.|++++|...++++...  .|+...... .
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~  191 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSN----QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA  191 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence            3344444444444444444444444443111    12233444444444444444444444444433  122221111 1


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 006010          234 MDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP-NEVTYNTLIHGLCLKGN  312 (664)
Q Consensus       234 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~  312 (664)
                      ...+...++.++|...+++..... +.+...+..+...+...|++++|+..|+++....... +...+..++..+...|+
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence            112333344444444444443332 2233444444444444444444444444444432111 12344444444444444


Q ss_pred             hHHHHHHHHHH
Q 006010          313 LDKAVSLLDRM  323 (664)
Q Consensus       313 ~~~a~~~~~~~  323 (664)
                      .++|...|++.
T Consensus       271 ~~~a~~~~r~a  281 (287)
T 3qou_A          271 GDALASXYRRQ  281 (287)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CCcHHHHHHHH
Confidence            44444444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.93  E-value=3.1e-08  Score=93.67  Aligned_cols=167  Identities=13%  Similarity=0.045  Sum_probs=115.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006010          401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCY-SVLI  479 (664)
Q Consensus       401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~  479 (664)
                      +...+..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|...++++....  |+.... ....
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence            34455566666777777777777777777664 5566777777777777888888888777776654  343322 2223


Q ss_pred             HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010          480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN  559 (664)
Q Consensus       480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  559 (664)
                      ..+...++.++|...+++.+... +.+...+..+...+...|++++|...|++++..+++. .+...+..++..+...|+
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA-ADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-GGGHHHHHHHHHHHHHCT
T ss_pred             HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-ccchHHHHHHHHHHHcCC
Confidence            33556677777888888777653 3356777888888888888888888888887655542 125567788888888888


Q ss_pred             hhHHHHHHHHHHH
Q 006010          560 ISHSIDLLNSMMD  572 (664)
Q Consensus       560 ~~~A~~~~~~~~~  572 (664)
                      .++|...+++...
T Consensus       271 ~~~a~~~~r~al~  283 (287)
T 3qou_A          271 GDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            8888888877653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.90  E-value=2.4e-07  Score=82.97  Aligned_cols=163  Identities=12%  Similarity=-0.027  Sum_probs=67.7

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHH
Q 006010          331 NEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEG----KAEDAMKLWKQMMEKGCKPNTVVYS  406 (664)
Q Consensus       331 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~  406 (664)
                      ++..+..+...|...+++++|.++|++..+.+   +...+..+...|.. +    ++++|+..|++..+.|   +...+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~   89 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI   89 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            33344444444444444444444444444332   23333334433333 3    4444444444444332   333344


Q ss_pred             HHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006010          407 ALIDGLCR----VGKPDEAEEILFEMINNGCA-ANAFTYSSLMKGFFE----SGKGHKAVEIWKDMAKNNCVYNEVCYSV  477 (664)
Q Consensus       407 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  477 (664)
                      .+...|..    .+++++|..+|++..+.+.. ..+..+..|...|..    .++.++|...|++..+.+  .+...+..
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~  167 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW  167 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence            44444433    44445555555544444310 013444444444444    444455555555444431  22223333


Q ss_pred             HHHHHHcC-C-----ChHHHHHHHHHHHhCC
Q 006010          478 LIHGLCED-G-----KLREARMVWTQMLSRG  502 (664)
Q Consensus       478 l~~~~~~~-g-----~~~~A~~~~~~~~~~~  502 (664)
                      |...|... |     +.++|...|+...+.|
T Consensus       168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            44433321 1     4455555555444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.89  E-value=5.7e-08  Score=84.26  Aligned_cols=162  Identities=12%  Similarity=0.035  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHH
Q 006010          156 SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMD  235 (664)
Q Consensus       156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  235 (664)
                      .+...+..+.+.|++++|...|+++++..+    .+...+..+..++.+.|++++|+..|+......  |+...+..+..
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~   81 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ----SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAK   81 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHH----TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHH
Confidence            455666777778888888888887765221    245567777777888888888888888776653  24443332221


Q ss_pred             H-HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCh
Q 006010          236 G-LCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP-NEVTYNTLIHGLCLKGNL  313 (664)
Q Consensus       236 ~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~  313 (664)
                      . +...++..+|+..+++..... +.+...+..+...+...|++++|...|+++....+.+ +...+..+...+...|+.
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             HHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence            2 112223334566666666542 2245666667777777777777777777766653322 234566666677777777


Q ss_pred             HHHHHHHHHHH
Q 006010          314 DKAVSLLDRMV  324 (664)
Q Consensus       314 ~~a~~~~~~~~  324 (664)
                      ++|...|++.+
T Consensus       161 ~~A~~~y~~al  171 (176)
T 2r5s_A          161 NAIASKYRRQL  171 (176)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            77777766654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.88  E-value=9.5e-08  Score=91.41  Aligned_cols=187  Identities=14%  Similarity=-0.002  Sum_probs=112.8

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 006010          376 GLFKEGKAEDAMKLWKQMMEKGC---KP--NTVVYSALIDGLCRVGKPDEAEEILFEMINN----GCAA-NAFTYSSLMK  445 (664)
Q Consensus       376 ~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~  445 (664)
                      .|...|++++|...|.+..+...   .+  -..++..+...|...|++++|...|++.++.    |.+. ...++..+..
T Consensus        45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  124 (307)
T 2ifu_A           45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK  124 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444555555555554433210   00  1234555556666666777776666665542    1111 1345666777


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCcC-HHhHHHHHH
Q 006010          446 GFFESGKGHKAVEIWKDMAKNNCVY-----NEVCYSVLIHGLCEDGKLREARMVWTQMLSR----GCKPD-VVAYSSMIH  515 (664)
Q Consensus       446 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~  515 (664)
                      .|.. |++++|++.+++..+.....     ...++..+...+...|++++|+..|++.+..    +..+. ...+..++.
T Consensus       125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~  203 (307)
T 2ifu_A          125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL  203 (307)
T ss_dssp             HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence            7777 88888888887766532111     1356778888899999999999999988753    11111 235667777


Q ss_pred             HHHHcCCHHHHHHHHHHhhhcCCCCCCCH--hHHHHHHHHHHHcCChhHHHH
Q 006010          516 GLCNAGSVEEALKLFNEMLCLEPKSQPDV--FTYNILLNALCKQSNISHSID  565 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~  565 (664)
                      ++...|++++|...|++++ ..+......  .....++.++ ..|+.+.+..
T Consensus       204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            8888899999999999996 555433222  1334445544 5677666655

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.87  E-value=4.1e-08  Score=103.14  Aligned_cols=156  Identities=8%  Similarity=0.018  Sum_probs=105.2

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010          380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI  459 (664)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  459 (664)
                      .|++++|+..+++..+... .+...+..+...+...|++++|.+.+++.++.. +.+...+..+...|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4677888888888776532 256777778888888888888888888888764 55677788888888888888888888


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc---CCHHHHHHHHHHhhhc
Q 006010          460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA---GSVEEALKLFNEMLCL  536 (664)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  536 (664)
                      +++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...   |++++|...+++++..
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            88887765 4566777788888888888888888888887753 23456777788888888   8888888888888665


Q ss_pred             CCC
Q 006010          537 EPK  539 (664)
Q Consensus       537 ~~~  539 (664)
                      .+.
T Consensus       158 ~p~  160 (568)
T 2vsy_A          158 GVG  160 (568)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.81  E-value=1.3e-07  Score=99.30  Aligned_cols=154  Identities=8%  Similarity=-0.045  Sum_probs=116.4

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010          345 LGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEI  424 (664)
Q Consensus       345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  424 (664)
                      .|++++|.+.+++..+.... +...+..+...+.+.|++++|+..+++..+... .+...+..+...+...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            47888999999988776443 677888899999999999999999999988643 3677888889999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHhC
Q 006010          425 LFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED---GKLREARMVWTQMLSR  501 (664)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  501 (664)
                      ++++++.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...   |+.++|.+.+++.++.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99998874 5678888999999999999999999999988876 45677888888999998   9999999999999876


Q ss_pred             C
Q 006010          502 G  502 (664)
Q Consensus       502 ~  502 (664)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.78  E-value=3.6e-07  Score=82.08  Aligned_cols=145  Identities=9%  Similarity=-0.054  Sum_probs=101.8

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH
Q 006010          475 YSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNAL  554 (664)
Q Consensus       475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~  554 (664)
                      +..+...+...|++++|...|++.+    .|+...+..++..+...|++++|+..|++++...+.   +...|..+..++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~lg~~~   81 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHH
Confidence            4456677788899999999888774    567788888999999999999999999998766544   667888888999


Q ss_pred             HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhc-cCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCC
Q 006010          555 CKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKL-EAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSP  633 (664)
Q Consensus       555 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  633 (664)
                      ...|++++|+..++++.+.  .|+.....     +...+ .........+..++.++.+.|++++|.+.++++.+.  .|
T Consensus        82 ~~~~~~~~A~~~~~~al~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p  152 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQ--LRGNQLID-----YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KS  152 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHT--TTTCSEEE-----CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CC
T ss_pred             HHcccHHHHHHHHHHHHHh--CCCccHHH-----HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cc
Confidence            9999999999999998873  33211000     00000 000000111223455599999999999999999974  44


Q ss_pred             Ch
Q 006010          634 QT  635 (664)
Q Consensus       634 ~~  635 (664)
                      +.
T Consensus       153 ~~  154 (213)
T 1hh8_A          153 EP  154 (213)
T ss_dssp             SG
T ss_pred             cc
Confidence            43

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.74  E-value=8.4e-08  Score=80.02  Aligned_cols=104  Identities=9%  Similarity=-0.016  Sum_probs=83.6

Q ss_pred             CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHH
Q 006010          471 NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNIL  550 (664)
Q Consensus       471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  550 (664)
                      +...+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|+..|++++..+|+   +...|..+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---~~~~~~~l  110 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN---DYTPVFHT  110 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---CCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---CcHHHHHH
Confidence            44567777788888899999999998888753 335678888888888999999999999988876665   56678888


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010          551 LNALCKQSNISHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       551 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  580 (664)
                      ..+|.+.|++++|...|++.++  +.|+..
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~--l~~~~~  138 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQ--HSNDEK  138 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence            8888999999999999999887  456654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.74  E-value=3e-07  Score=74.28  Aligned_cols=104  Identities=14%  Similarity=0.111  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010          473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN  552 (664)
Q Consensus       473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  552 (664)
                      ..+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..|+++++.++.   +...|..+..
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~   89 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---FIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---hhHHHHHHHH
Confidence            345566777777777777777777777653 334667777777777788888888888777665554   5667777777


Q ss_pred             HHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010          553 ALCKQSNISHSIDLLNSMMDRGCDPDLVTC  582 (664)
Q Consensus       553 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  582 (664)
                      ++...|++++|++.|++.++  +.|+....
T Consensus        90 ~~~~~~~~~~A~~~~~~al~--l~P~~~~a  117 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQ--VDPSNEEA  117 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH--HCcCCHHH
Confidence            77778888888888887776  56665443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.74  E-value=5.7e-06  Score=78.38  Aligned_cols=256  Identities=14%  Similarity=0.038  Sum_probs=150.8

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-ChHH
Q 006010          379 KEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG-KPDEAEEILFEMINNGCAANAFTYSSLMKGFFES-G-KGHK  455 (664)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~  455 (664)
                      +.+..++|++++++++..+.. +..+|+.-...+...| .+++++..++.++... +.+..+|+.-...+... + ++++
T Consensus        66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~  143 (349)
T 3q7a_A           66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS  143 (349)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred             hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence            344456677777777766433 4455666555566666 4777777777777664 55666666655555555 5 6777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH--------HHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCC-----
Q 006010          456 AVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR--------EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGS-----  522 (664)
Q Consensus       456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----  522 (664)
                      ++++++.+.+.. +.|..+|+.-...+...|.++        ++++.++++++.. .-|..+|+.....+.+.+.     
T Consensus       144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~  221 (349)
T 3q7a_A          144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS  221 (349)
T ss_dssp             HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence            777777777665 556666665555554444444        7888888888764 3366778877777777765     


Q ss_pred             --HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhH--HHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCC--
Q 006010          523 --VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH--SIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAP--  596 (664)
Q Consensus       523 --~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--  596 (664)
                        ++++++.+++++..+++   |...|+.+-..+.+.|+...  -..++=   ..|... ......+...|.+..+..  
T Consensus       222 ~~~~eELe~~~~aI~~~P~---n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~  294 (349)
T 3q7a_A          222 RSLQDELIYILKSIHLIPH---NVSAWNYLRGFLKHFSLPLVPILPAILP---YTASKL-NPDIETVEAFGFPMPSDPLP  294 (349)
T ss_dssp             HHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCSGGGHHHHGG---GTC---------------CCCCC-CCC
T ss_pred             HHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCCcccccccccc---cccccc-cccchhHHHHHHHHHhcccc
Confidence              78899999988877766   78888877777776665411  000000   000000 000011111111111110  


Q ss_pred             ----CCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 006010          597 ----QDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQEL  645 (664)
Q Consensus       597 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  645 (664)
                          -.....++-|+.+|...|+.++|.++++.+.++--+.....|...+..+
T Consensus       295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~~  347 (349)
T 3q7a_A          295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRREC  347 (349)
T ss_dssp             SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHhh
Confidence                1222334456666999999999999999997653233446666655443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.74  E-value=6.5e-07  Score=81.88  Aligned_cols=192  Identities=9%  Similarity=-0.040  Sum_probs=133.4

Q ss_pred             hcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH-------HHHHHHcCCHhHHHHHHHHHHhcccCCCCc--C---------
Q 006010          130 KAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV-------LNVIIQEGLYHRALEFYNHIVNAKHMNILP--N---------  191 (664)
Q Consensus       130 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~---------  191 (664)
                      ..++...|++.|.++...  .+.....|+.+       ...+...++..++...+...++..+..+..  +         
T Consensus        18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence            578899999999998775  45567788888       577777777777777777765521111000  0         


Q ss_pred             ------HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HH
Q 006010          192 ------TLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT--PV  263 (664)
Q Consensus       192 ------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~  263 (664)
                            ......+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ..
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~  172 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA  172 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence                  1123445667788899999999998888764  433366666678888899999999888655431 111  23


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010          264 TFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN--EVTYNTLIHGLCLKGNLDKAVSLLDRMVAS  326 (664)
Q Consensus       264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  326 (664)
                      .+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            567777888888999999988888764322143  345566677778888888888888888876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.73  E-value=3.5e-07  Score=87.43  Aligned_cols=58  Identities=14%  Similarity=0.168  Sum_probs=28.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          125 FKAYGKAHLVEEAIRLFHTMVDEFHCKRT----VKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      +..|...|++++|++.|.+..+......+    ..+|+.++..|.+.|++++|+..|++.++
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~  104 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV  104 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            33455555666665555554332110011    23455555555555566666555555543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.71  E-value=4e-06  Score=79.47  Aligned_cols=165  Identities=12%  Similarity=0.018  Sum_probs=118.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 006010          408 LIDGLCRVGKPDEAEEILFEMINNGC-AANA----FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCV-YN----EVCYSV  477 (664)
Q Consensus       408 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~  477 (664)
                      .+..+...|++++|..++++..+... .++.    ..+..+...+...+++++|+..++.+...... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35567778888888888888776431 1221    12334666677778888888888888774322 22    236888


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhC-----CCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC--CCCCC-HhHHH
Q 006010          478 LIHGLCEDGKLREARMVWTQMLSR-----GCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP--KSQPD-VFTYN  548 (664)
Q Consensus       478 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~-~~~~~  548 (664)
                      +...|...|++++|...++++++.     +..+. ..++..++..|.+.|++++|..++++++...+  +..+. ...|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            888899999999999999888731     12222 24788899999999999999999999865432  21222 56788


Q ss_pred             HHHHHHHHcCC-hhHHHHHHHHHHH
Q 006010          549 ILLNALCKQSN-ISHSIDLLNSMMD  572 (664)
Q Consensus       549 ~l~~~~~~~g~-~~~A~~~~~~~~~  572 (664)
                      .+..+|.+.|+ +++|.+.++++..
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            88999999995 6999999999874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.71  E-value=4.4e-07  Score=73.26  Aligned_cols=109  Identities=13%  Similarity=0.102  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHH
Q 006010          438 FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGL  517 (664)
Q Consensus       438 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  517 (664)
                      ..+......|.+.|++++|++.|++.++.. |.+...|..+..++...|++++|+..+++.++.. +.+...|..++.++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            445566777777788888888887777765 5567777777888888888888888888877753 33466777888888


Q ss_pred             HHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHH
Q 006010          518 CNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILL  551 (664)
Q Consensus       518 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  551 (664)
                      ...|++++|+..|+++++.+|+   +...+..+.
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~---~~~a~~~l~  122 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPS---NEEAREGVR  122 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCcC---CHHHHHHHH
Confidence            8888888888888888766554   444444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.67  E-value=1.3e-06  Score=78.30  Aligned_cols=127  Identities=9%  Similarity=-0.083  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010          121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK  200 (664)
Q Consensus       121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~  200 (664)
                      +..++..+...|++++|++.|++.+     +++...|..++..+.+.|++++|...|+++.+..    +.+...+..+..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~lg~   79 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----KHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHH
Confidence            3445555556666666666666552     3455566666666666666666666666665521    123445556666


Q ss_pred             HHHhcCChhHHHHHHhhcccCC--------------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006010          201 TVCRLGLVDNAIQLFREMPVRN--------------CEP-DIYTYCTLMDGLCKENRLDEAVLLLDEMQVD  256 (664)
Q Consensus       201 ~~~~~g~~~~A~~~~~~~~~~~--------------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  256 (664)
                      ++...|++++|.+.|+...+..              ..| ....+..+..++.+.|++++|...|++....
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            6666666666666666655432              011 1256777777777788888888877777765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.67  E-value=7.5e-08  Score=80.50  Aligned_cols=98  Identities=9%  Similarity=-0.001  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHH
Q 006010          471 NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNIL  550 (664)
Q Consensus       471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  550 (664)
                      +...+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|+..|++++...|.   +...|..+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l   95 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---EPRFPFHA   95 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHHHHH
Confidence            44556667777778888888888888877653 335667777888888888888888888888765554   55667777


Q ss_pred             HHHHHHcCChhHHHHHHHHHHH
Q 006010          551 LNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       551 ~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      ..+|...|++++|...|++.++
T Consensus        96 g~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           96 AECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            7888888888888888888776

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.67  E-value=2e-05  Score=74.72  Aligned_cols=144  Identities=8%  Similarity=0.009  Sum_probs=92.5

Q ss_pred             HHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc-C
Q 006010           91 QHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAH-LVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE-G  168 (664)
Q Consensus        91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~  168 (664)
                      ......+..++|..+++.++..++. ...+|+....++...| .++++++.++.++..  .+.+..+|+.-...+.+. +
T Consensus        62 ~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~  138 (349)
T 3q7a_A           62 AIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISP  138 (349)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcC
Confidence            3344445556788888888887744 6677887777777777 488888888888765  556777888777777776 6


Q ss_pred             -CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChh--------HHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010          169 -LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVD--------NAIQLFREMPVRNCEPDIYTYCTLMDGLCK  239 (664)
Q Consensus       169 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  239 (664)
                       ++++++++++.+++.+    +.+..+|+--.-++.+.|.++        ++++.++++.+.+ +.|..+|+.....+.+
T Consensus       139 ~~~~~EL~~~~k~L~~d----pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          139 QDPVSEIEYIHGSLLPD----PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS  213 (349)
T ss_dssp             SCCHHHHHHHHHHTSSC----TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence             7778888888887622    224455555544444444444        5555555555544 3355555555555555


Q ss_pred             cCC
Q 006010          240 ENR  242 (664)
Q Consensus       240 ~g~  242 (664)
                      .++
T Consensus       214 l~~  216 (349)
T 3q7a_A          214 RPG  216 (349)
T ss_dssp             STT
T ss_pred             ccc
Confidence            443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.66  E-value=8.2e-07  Score=84.26  Aligned_cols=171  Identities=11%  Similarity=0.033  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC--H
Q 006010          119 KSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT----VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN--T  192 (664)
Q Consensus       119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~  192 (664)
                      ..+...+..+...|++++|++.+...++.....++    ...+..++..+...|++++|...++++.+.......+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            34555566666777777777777666543222111    12344455566666777777777777664221111122  3


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHhhcc---cCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCC-C
Q 006010          193 LTFNLVIKTVCRLGLVDNAIQLFREMP---VRN-CEP--DIYTYCTLMDGLCKENRLDEAVLLLDEMQVDG----CFP-T  261 (664)
Q Consensus       193 ~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~  261 (664)
                      .+++.+...|...|++++|...|++..   +.. ..+  ...++..+...|.+.|++++|+..+++.....    ... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            366777777777777777777777665   211 011  12466777777777777777777777655421    111 1


Q ss_pred             HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 006010          262 PVTFNVLINGLCKNGELGRA-AKLVDNMF  289 (664)
Q Consensus       262 ~~~~~~li~~~~~~g~~~~a-~~~~~~~~  289 (664)
                      ..+|..+...|.+.|++++| ...+++..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            45667777777777777777 66666654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.65  E-value=1.1e-06  Score=74.99  Aligned_cols=130  Identities=14%  Similarity=0.093  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHH
Q 006010          438 FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGL  517 (664)
Q Consensus       438 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  517 (664)
                      ..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++.+... +.+...+..++.++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            345566667777788888888887777654 4466777777888888888888888888887753 33566778888888


Q ss_pred             HHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH--HHHHHHHcCChhHHHHHHHHHHH
Q 006010          518 CNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI--LLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       518 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      ...|++++|...|++++...+.   +...+..  .+..+...|++++|+..+.+...
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPH---DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            8888888888888888765443   4444433  33346677888888888877653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.64  E-value=4.8e-07  Score=82.73  Aligned_cols=191  Identities=9%  Similarity=-0.115  Sum_probs=144.9

Q ss_pred             hCCCcchHHHHHHHHHhCCCCcCHHHHHHH-------HHHHHhcCCHHHHHHHHHHhhhcC-----------CC------
Q 006010           95 NSGDFKSLEMVLYRMRREKRVVLEKSFIFI-------FKAYGKAHLVEEAIRLFHTMVDEF-----------HC------  150 (664)
Q Consensus        95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~-----------~~------  150 (664)
                      ..+++..|.+.|.++....+. ....|..+       ..++...++..+++..++..+...           |.      
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            689999999999999998744 67788888       567777777777777766654410           00      


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCC--
Q 006010          151 --KRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPD--  226 (664)
Q Consensus       151 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--  226 (664)
                        ......+......+...|++++|.++|+.+..     ..|+......+...+.+.|++++|+..|+...... .|.  
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~  170 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA  170 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence              00134556678899999999999999999865     23544466666678899999999999999776542 121  


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010          227 IYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT--PVTFNVLINGLCKNGELGRAAKLVDNMFLKG  292 (664)
Q Consensus       227 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g  292 (664)
                      ...+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            24678889999999999999999999985433243  3466677788999999999999999998874

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.64  E-value=7.7e-07  Score=76.05  Aligned_cols=95  Identities=8%  Similarity=0.045  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH
Q 006010          474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNA  553 (664)
Q Consensus       474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  553 (664)
                      .+..+...+...|++++|...+++.++.. +.+..++..++.++...|++++|...+++++...+.   +...|..+..+
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~   90 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHH
Confidence            45555666666677777777776666542 224556666666666667777777777666544332   45556666666


Q ss_pred             HHHcCChhHHHHHHHHHHH
Q 006010          554 LCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       554 ~~~~g~~~~A~~~~~~~~~  572 (664)
                      +...|++++|...++++.+
T Consensus        91 ~~~~~~~~~A~~~~~~a~~  109 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVK  109 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHH
Confidence            6666677777776666665

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.64  E-value=2e-06  Score=81.60  Aligned_cols=172  Identities=8%  Similarity=-0.025  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCC--cCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC---CCCC--
Q 006010          154 VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNIL--PNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRN---CEPD--  226 (664)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~--  226 (664)
                      ...+...+..+...|++++|.+.++...+..+....  .....+..+...+...|++++|...+++.....   ..+.  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            345556677778888888888888887763221100  011345556677778888888888888765431   1122  


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-
Q 006010          227 IYTYCTLMDGLCKENRLDEAVLLLDEMQV---D-GCFP--TPVTFNVLINGLCKNGELGRAAKLVDNMFLKG----CLP-  295 (664)
Q Consensus       227 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~p-  295 (664)
                      ..+++.+...|...|++++|...+++..+   . +..+  ...++..+...|...|++++|+..+++.....    ... 
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            45788888888888899888888888762   1 1111  12577888888888899998888888875431    111 


Q ss_pred             CHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 006010          296 NEVTYNTLIHGLCLKGNLDKA-VSLLDRMVA  325 (664)
Q Consensus       296 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~  325 (664)
                      -..+|..+...|...|++++| ...+++...
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            146777888888888888888 777777654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.64  E-value=2.5e-07  Score=86.96  Aligned_cols=98  Identities=13%  Similarity=-0.035  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIH  480 (664)
Q Consensus       401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  480 (664)
                      +...+..+...+...|++++|...|+++++.. +.+...+..+...|.+.|++++|...+++..+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34455566666666777777777777666653 4456666666666666777777777766666654 345556666666


Q ss_pred             HHHcCCChHHHHHHHHHHHh
Q 006010          481 GLCEDGKLREARMVWTQMLS  500 (664)
Q Consensus       481 ~~~~~g~~~~A~~~~~~~~~  500 (664)
                      ++...|++++|...|++..+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666777777666666655

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.64  E-value=7e-07  Score=84.74  Aligned_cols=169  Identities=11%  Similarity=0.022  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC--HHH
Q 006010          121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV----KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN--TLT  194 (664)
Q Consensus       121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~  194 (664)
                      +...+..+...|++++|.+.++.........++.    ..+..++..+...|++++|+..|+++++.......+.  ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            3344667788899999999998886643333332    1334566667777788888888888876211111110  235


Q ss_pred             HHHHHHHHHhcCChhHHHHHHhhccc----C-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HH
Q 006010          195 FNLVIKTVCRLGLVDNAIQLFREMPV----R-NCEPD-IYTYCTLMDGLCKENRLDEAVLLLDEMQVD----GCFPT-PV  263 (664)
Q Consensus       195 ~~~ll~~~~~~g~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~  263 (664)
                      ++.+..+|...|++++|...|+++.+    . +..+. ..++..+...|.+.|++++|...+++..+.    +..+. ..
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            77777788888888888888877763    1 11111 235667777777777777777777765432    11111 45


Q ss_pred             HHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 006010          264 TFNVLINGLCKNGE-LGRAAKLVDNMF  289 (664)
Q Consensus       264 ~~~~li~~~~~~g~-~~~a~~~~~~~~  289 (664)
                      +|..+..+|.+.|+ +++|.+.+++..
T Consensus       238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          238 LYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            66666666777773 467766666654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.62  E-value=3.4e-07  Score=74.14  Aligned_cols=115  Identities=10%  Similarity=0.146  Sum_probs=88.4

Q ss_pred             HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHH
Q 006010          507 VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV-TCNIF  585 (664)
Q Consensus       507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l  585 (664)
                      ..++..++..+.+.|++++|+..|++++..+|.   +...|..+..+|.+.|++++|+..+++.++  +.|+.. .+..+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~   82 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHH
Confidence            346778899999999999999999999877665   678899999999999999999999999986  333221 12222


Q ss_pred             HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHH
Q 006010          586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVV  642 (664)
Q Consensus       586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  642 (664)
                      ..+              +..+|.++...|++++|++.|++.++  ..|++.....+-
T Consensus        83 a~~--------------~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~  123 (127)
T 4gcn_A           83 AKA--------------MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVK  123 (127)
T ss_dssp             HHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHHH
T ss_pred             HHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHHH
Confidence            222              23466669999999999999999987  467887665543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.62  E-value=4e-07  Score=75.88  Aligned_cols=97  Identities=11%  Similarity=0.008  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHH
Q 006010          119 KSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLV  198 (664)
Q Consensus       119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  198 (664)
                      ..+..+...+.+.|++++|+..|++.+..  .|.+...|..++.++...|++++|+..|+++.+..+    .+...|..+
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P----~~~~~~~~l  110 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK----NDYTPVFHT  110 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS----SCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC----CCcHHHHHH
Confidence            34445555555555555555555555443  233444555555555555555555555555544211    123344455


Q ss_pred             HHHHHhcCChhHHHHHHhhcccC
Q 006010          199 IKTVCRLGLVDNAIQLFREMPVR  221 (664)
Q Consensus       199 l~~~~~~g~~~~A~~~~~~~~~~  221 (664)
                      ..+|.+.|++++|++.|+...+.
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            55555555555555555555444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.61  E-value=3.2e-07  Score=79.62  Aligned_cols=119  Identities=14%  Similarity=0.219  Sum_probs=67.8

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHH-HHHcCCH--HH
Q 006010          449 ESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHG-LCNAGSV--EE  525 (664)
Q Consensus       449 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~  525 (664)
                      ..|++++|...++...+.. +.+...+..+...+...|++++|...|++++... +.+...+..+..+ +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence            3455556666666555544 3455556666666666666666666666665542 2234455555555 5566666  66


Q ss_pred             HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      |...+++++...+.   +...+..+...+...|++++|...++++.+
T Consensus       100 A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          100 TRAMIDKALALDSN---EITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            66666666544333   445566666666666666666666666665

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.61  E-value=5e-07  Score=84.96  Aligned_cols=195  Identities=11%  Similarity=0.016  Sum_probs=119.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK  445 (664)
Q Consensus       366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  445 (664)
                      +...+..+...+.+.|++++|+..|++..+.... +...+..+..++...|++++|...++++++.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4456666777777888888888888887776322 66777777888888888888888888887764 556777788888


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010          446 GFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE  525 (664)
Q Consensus       446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  525 (664)
                      +|...|++++|...++...+.. +.+...+...+....+   ..++.. +..........+......+...  ..|++++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~  153 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER  153 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence            8888888888888888776643 1111111111111111   111111 2222223333444443333332  2688899


Q ss_pred             HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc-CChhHHHHHHHHHHH
Q 006010          526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ-SNISHSIDLLNSMMD  572 (664)
Q Consensus       526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~  572 (664)
                      |++.+++++..+++   +......+...+.+. +.+++|.++|.++.+
T Consensus       154 A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          154 ELEECQRNHEGHED---DGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHTTTSGGGTTTSC---HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHhhhccccc---hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999888543322   333334444444444 668888888888775

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.57  E-value=1.8e-06  Score=70.44  Aligned_cols=118  Identities=13%  Similarity=0.066  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006010          436 NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIH  515 (664)
Q Consensus       436 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  515 (664)
                      +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            34445555555555566666666665555543 3345555555556666666666666666655532 223455556666


Q ss_pred             HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010          516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS  558 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  558 (664)
                      ++...|++++|...|++++...+.   +...+..+..++...|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSS---CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGG---GTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhc
Confidence            666666666666666666443322   2334444444444433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.56  E-value=1.4e-06  Score=70.39  Aligned_cols=110  Identities=16%  Similarity=0.122  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010          473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN  552 (664)
Q Consensus       473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  552 (664)
                      ..+..+...+...|++++|...|++.++.. +.+...|..+..++.+.|++++|+..+++++...+.   +...|..+..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~   80 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHH
Confidence            445666777778888888888888877653 335677788888888888888888888888766554   5667777888


Q ss_pred             HHHHcCChhHHHHHHHHHHHCCCC------CCHHHHHHHHHh
Q 006010          553 ALCKQSNISHSIDLLNSMMDRGCD------PDLVTCNIFLTA  588 (664)
Q Consensus       553 ~~~~~g~~~~A~~~~~~~~~~~~~------p~~~~~~~ll~~  588 (664)
                      ++...|++++|...+++..+  +.      |+.......+..
T Consensus        81 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~~~~~~l~~  120 (126)
T 3upv_A           81 AQIAVKEYASALETLDAART--KDAEVNNGSSAREIDQLYYK  120 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHH--hCcccCCchhHHHHHHHHHH
Confidence            88888888888888888876  34      555544444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.56  E-value=5.5e-05  Score=71.34  Aligned_cols=231  Identities=9%  Similarity=0.058  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C
Q 006010          385 DAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGK----------PDEAEEILFEMINNGCAANAFTYSSLMKGFFESG--K  452 (664)
Q Consensus       385 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~  452 (664)
                      +|+..++.+...++. +..+|+.--..+...+.          +++++.+++.++... +.+..+|+.-.-.+...+  .
T Consensus        48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence            566666666655322 33334433333322222          467777777777654 556777766666666666  3


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc-----------
Q 006010          453 GHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGK-LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA-----------  520 (664)
Q Consensus       453 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------  520 (664)
                      +++++.+++.+.+.+ +.|..+|+.-...+...|. ++++++.++++++.. +-|..+|+.....+.+.           
T Consensus       126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~  203 (331)
T 3dss_A          126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR  203 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------C
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccc
Confidence            678888888888766 5677777777767777777 578888888888764 33566777666665554           


Q ss_pred             ---CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          521 ---GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ-----------SNISHSIDLLNSMMDRGCDPDLVTCNIFL  586 (664)
Q Consensus       521 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll  586 (664)
                         +.++++++.+.+++..+|+   |...|+.+-..+.+.           +.++++++.++++.+  ..||. .|..+.
T Consensus       204 ~~~~~~~eEle~~~~ai~~~P~---d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~  277 (331)
T 3dss_A          204 LPENVLLKELELVQNAFFTDPN---DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLT  277 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHH
Confidence               4588999999999877776   788887665555544           457899999999998  67876 343222


Q ss_pred             HhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCCh-HHHHHHHH
Q 006010          587 TALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQT-STWERVVQ  643 (664)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~  643 (664)
                      .++                +.......|..++...++.++.+.  .|-- .-|..+..
T Consensus       278 ~~~----------------~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~y~d~~~  317 (331)
T 3dss_A          278 IIL----------------LMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRS  317 (331)
T ss_dssp             HHH----------------HHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHHHHHHHH
T ss_pred             HHH----------------HHHhhcccccHHHHHHHHHHHHHh--CcchhhHHHHHHH
Confidence            221                111123467778899999999873  5533 44444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.56  E-value=2.4e-06  Score=69.32  Aligned_cols=119  Identities=17%  Similarity=0.073  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHH
Q 006010          437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHG  516 (664)
Q Consensus       437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  516 (664)
                      ...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..... +.+...+..++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            3445555566666666666666666665543 3455566666666666777777777776666542 2235566666667


Q ss_pred             HHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCCh
Q 006010          517 LCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNI  560 (664)
Q Consensus       517 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  560 (664)
                      +...|++++|...|++++...+.   +...+..+..++.+.|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPD---NETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHhcC
Confidence            77777777777777776554333   455566666666665553

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.55  E-value=3.6e-06  Score=67.58  Aligned_cols=94  Identities=16%  Similarity=0.301  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHH
Q 006010          439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLC  518 (664)
Q Consensus       439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  518 (664)
                      .+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~   88 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence            33334444444444444444444444332 2233344444444444444444444444444331 123334444444444


Q ss_pred             HcCCHHHHHHHHHHhh
Q 006010          519 NAGSVEEALKLFNEML  534 (664)
Q Consensus       519 ~~g~~~~A~~~~~~~~  534 (664)
                      ..|++++|...+++++
T Consensus        89 ~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           89 KQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHH
Confidence            4455555555554443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.55  E-value=1.4e-06  Score=77.47  Aligned_cols=163  Identities=11%  Similarity=-0.060  Sum_probs=96.3

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCc-CHHhHHHHHHHHHHcCCH
Q 006010          449 ESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR----GCKP-DVVAYSSMIHGLCNAGSV  523 (664)
Q Consensus       449 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~  523 (664)
                      ..|++++|.+.++.+.. ........+..+...+...|++++|...+++.+..    +..| ...++..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45666666664443332 11233456666667777777777777777766541    1122 235667777788888888


Q ss_pred             HHHHHHHHHhhhcCCCCC--C--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHhhhhhccCCCC
Q 006010          524 EEALKLFNEMLCLEPKSQ--P--DVFTYNILLNALCKQSNISHSIDLLNSMMDRGC-DPDLVTCNIFLTALKEKLEAPQD  598 (664)
Q Consensus       524 ~~A~~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~  598 (664)
                      ++|...+++++.......  +  ....+..+...+...|++++|...+++..+... ..+.......             
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-------------  149 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA-------------  149 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH-------------
Confidence            888888887754321111  1  133466777778888888888888888774210 1121111111             


Q ss_pred             chhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          599 GTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                          +..++.++...|++++|.+.++++.+.
T Consensus       150 ----~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          150 ----FRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             ----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence                123455588888888888888887764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.55  E-value=4e-07  Score=78.98  Aligned_cols=121  Identities=7%  Similarity=0.115  Sum_probs=94.8

Q ss_pred             HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH-HHHcCCh
Q 006010          482 LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNA-LCKQSNI  560 (664)
Q Consensus       482 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~  560 (664)
                      +...|++++|...+++.+... +.+...|..++..|...|++++|...|++++...+.   +...+..+..+ +...|++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATVLYYQASQH   95 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred             hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhcCCc
Confidence            345788999999999988763 346788999999999999999999999999766554   67788888888 7899998


Q ss_pred             --hHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          561 --SHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       561 --~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                        ++|...++++.+  ..|+... +..+.                     .++...|++++|...++++.+.
T Consensus        96 ~~~~A~~~~~~al~--~~p~~~~~~~~la---------------------~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           96 MTAQTRAMIDKALA--LDSNEITALMLLA---------------------SDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             CCHHHHHHHHHHHH--HCTTCHHHHHHHH---------------------HHHHHTTCHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHH--hCCCcHHHHHHHH---------------------HHHHHcccHHHHHHHHHHHHhh
Confidence              999999999998  4565433 33333                     3399999999999999999985

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.53  E-value=1.2e-06  Score=77.88  Aligned_cols=157  Identities=10%  Similarity=-0.020  Sum_probs=90.3

Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHcCCChH
Q 006010          415 VGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKN----NC-VYNEVCYSVLIHGLCEDGKLR  489 (664)
Q Consensus       415 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~  489 (664)
                      .|++++|.++++.+... .......+..+...+...|++++|...+++....    +. +....++..+...+...|+++
T Consensus         5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            45555555533333221 1123445555555566666666666665554441    11 112345666667777777777


Q ss_pred             HHHHHHHHHHhC----CCCc--CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC-CCC--HhHHHHHHHHHHHcCCh
Q 006010          490 EARMVWTQMLSR----GCKP--DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS-QPD--VFTYNILLNALCKQSNI  560 (664)
Q Consensus       490 ~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~  560 (664)
                      +|...+++.++.    +-.|  ....+..+...+...|++++|...+++++...... .+.  ...+..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            777777766542    1111  13456777778888888888888888875332111 111  22356677778888888


Q ss_pred             hHHHHHHHHHHH
Q 006010          561 SHSIDLLNSMMD  572 (664)
Q Consensus       561 ~~A~~~~~~~~~  572 (664)
                      ++|.+.+++..+
T Consensus       164 ~~A~~~~~~al~  175 (203)
T 3gw4_A          164 LEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888888774

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.53  E-value=1.3e-06  Score=70.67  Aligned_cols=107  Identities=10%  Similarity=0.131  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH----hHHH
Q 006010          473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV----FTYN  548 (664)
Q Consensus       473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~  548 (664)
                      ..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++++...+...++.    .+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            345667777788888888888888877753 23456777788888888888888888888865544333322    2566


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010          549 ILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC  582 (664)
Q Consensus       549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  582 (664)
                      .+..++...|++++|++.|++.++  ..||+...
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~  119 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV  119 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence            677778888888888888888876  45665443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.53  E-value=2.3e-06  Score=68.73  Aligned_cols=57  Identities=21%  Similarity=0.333  Sum_probs=21.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006010          122 IFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHI  180 (664)
Q Consensus       122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  180 (664)
                      ..++..+...|++++|++.|.++...  .+.+...+..++..+...|++++|...++++
T Consensus        13 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   69 (125)
T 1na0_A           13 YNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            33333334444444444444433322  1222333333444444444444444444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.53  E-value=7.2e-07  Score=74.45  Aligned_cols=112  Identities=13%  Similarity=-0.014  Sum_probs=80.8

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 006010          424 ILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC  503 (664)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  503 (664)
                      .+++++... +.+...+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|++++... 
T Consensus         9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-   85 (148)
T 2vgx_A            9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-   85 (148)
T ss_dssp             SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence            344444432 3345566667777888888888888888877765 5567777778888888888888888888887753 


Q ss_pred             CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010          504 KPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP  538 (664)
Q Consensus       504 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (664)
                      +.+...+..+..+|...|++++|...|++++...+
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            23456777788888888888888888888865444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.53  E-value=2.9e-06  Score=69.10  Aligned_cols=119  Identities=8%  Similarity=-0.020  Sum_probs=95.2

Q ss_pred             CCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 006010           80 QLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNS  159 (664)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  159 (664)
                      +.++.++..+...+...|+++.|...|+.+....+ .+..++..++.++...|++++|++.|++.+..  .+.+...+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~   89 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTR   89 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHH
Confidence            34567888899999999999999999999987764 36778889999999999999999999998765  4557788899


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcC
Q 006010          160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLG  206 (664)
Q Consensus       160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g  206 (664)
                      ++..+.+.|++++|...|++..+.     .| +...+..+..++.+.|
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDL-----DSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhc
Confidence            999999999999999999998772     23 3345556666665544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.51  E-value=2.8e-05  Score=73.31  Aligned_cols=241  Identities=12%  Similarity=0.046  Sum_probs=116.2

Q ss_pred             HhcCChH-HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006010          308 CLKGNLD-KAVSLLDRMVASKCMPNEVTYGTIINGLVKLGR----------AVDGARVLMSMEERKFHVNEYIYSTLISG  376 (664)
Q Consensus       308 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  376 (664)
                      .+.|.+. +|+++.+.++... +-+...|+.--..+...+.          +++++.+++.+....++ +..+|+.-..+
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl  117 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL  117 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            3455544 6777777777653 2233444443333332222          34555555555554433 44555544444


Q ss_pred             HHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006010          377 LFKEGK--AEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGK-PDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKG  453 (664)
Q Consensus       377 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  453 (664)
                      +.+.++  +++++.+++++.+.... +..+|+.-...+...|. ++++++.+..+++.. +.|...|+.....+...+..
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred             HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence            444442  45555555555554332 44455444444444454 355555555555543 33444444443333332100


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc-----------CC
Q 006010          454 HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA-----------GS  522 (664)
Q Consensus       454 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~  522 (664)
                      ..+             ++        ..-...+.++++++.+...+... +-|...|+.+-..+.+.           +.
T Consensus       196 ~~~-------------~~--------~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~  253 (331)
T 3dss_A          196 PDS-------------GP--------QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTV  253 (331)
T ss_dssp             C---------------------------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHH
T ss_pred             ccc-------------cc--------ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHH
Confidence            000             00        00000023455566666555532 22344454443333333           45


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH-----HHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010          523 VEEALKLFNEMLCLEPKSQPDVFTYNILLNA-----LCKQSNISHSIDLLNSMMDRGCDPDLVT  581 (664)
Q Consensus       523 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~p~~~~  581 (664)
                      ++++++.+++++...|.   +  .|..+..+     ....|..+++..++.++.+  +.|-...
T Consensus       254 l~~el~~~~elle~~pd---~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~  310 (331)
T 3dss_A          254 LQSELESCKELQELEPE---N--KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA  310 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT---C--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred             HHHHHHHHHHHHhhCcc---c--chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence            78888888888765554   2  34322222     1235667788888888887  5665443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.50  E-value=3.2e-06  Score=68.60  Aligned_cols=94  Identities=10%  Similarity=-0.007  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVI  164 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (664)
                      .+..+...+...|+++.|...++.+....+ .+...+..++.++...|++++|++.+...+..  .+.+...+..++..+
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence            333334444444444444444444443321 12333334444444444444444444443332  122233334444444


Q ss_pred             HHcCCHhHHHHHHHHHH
Q 006010          165 IQEGLYHRALEFYNHIV  181 (664)
Q Consensus       165 ~~~~~~~~A~~~~~~~~  181 (664)
                      ...|++++|...|+++.
T Consensus        91 ~~~~~~~~A~~~~~~~~  107 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKAL  107 (131)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHH
Confidence            44444444444444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.50  E-value=2.6e-06  Score=82.35  Aligned_cols=132  Identities=14%  Similarity=0.009  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 006010          437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN--------------EVCYSVLIHGLCEDGKLREARMVWTQMLSRG  502 (664)
Q Consensus       437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  502 (664)
                      ...+..+...|.+.|++++|+..|++.........              ...|..+..++...|++++|+..++++++..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44555566666666666666666666665441111              4678888889999999999999999988863


Q ss_pred             CCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHH-HHHHHHHHH
Q 006010          503 CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHS-IDLLNSMMD  572 (664)
Q Consensus       503 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  572 (664)
                       +.+...|..+..+|...|++++|+..|++++...+.   +...+..+..++.+.|++++| ...+++|..
T Consensus       227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN---NKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             335778888999999999999999999999876665   667888888889999998888 456777764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.49  E-value=1.8e-06  Score=83.46  Aligned_cols=153  Identities=12%  Similarity=0.076  Sum_probs=116.0

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC--------------HHhHHHHHHH
Q 006010          451 GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD--------------VVAYSSMIHG  516 (664)
Q Consensus       451 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~  516 (664)
                      +++++|.+.++...... +.+...+..+...+...|++++|...|++.+.......              ..+|..+..+
T Consensus       127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            34445555444433322 23456788889999999999999999999998632211              4789999999


Q ss_pred             HHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCC
Q 006010          517 LCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAP  596 (664)
Q Consensus       517 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~  596 (664)
                      |.+.|++++|+..+++++...+.   +...|..+..+|...|++++|+..|+++++  +.|+.......+..        
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~--------  272 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAV--------  272 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH--------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH--------
Confidence            99999999999999999877665   778899999999999999999999999998  56765443333333        


Q ss_pred             CCchhhhHHHHHHhhhcCCcchH-HHHHHHHHHc
Q 006010          597 QDGTDFLNELAIRLFKRQRTSGG-FKIVEVMLQK  629 (664)
Q Consensus       597 ~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~  629 (664)
                                  ++...|++++| .+++++|.++
T Consensus       273 ------------~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          273 ------------CQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHH
Confidence                        28888888888 5567776543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.49  E-value=5.5e-07  Score=74.70  Aligned_cols=97  Identities=10%  Similarity=-0.006  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHH
Q 006010          472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILL  551 (664)
Q Consensus       472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  551 (664)
                      ...+..+...+...|++++|...|++++... +.+...|..+..++...|++++|+..|++++...|.   +...|..+.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg   93 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN---EPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHH
Confidence            3445556667777888888888888777653 235667777778888888888888888888765554   556677777


Q ss_pred             HHHHHcCChhHHHHHHHHHHH
Q 006010          552 NALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       552 ~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      .+|...|++++|...|++.++
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            788888888888888888776

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.44  E-value=4.6e-06  Score=67.33  Aligned_cols=97  Identities=14%  Similarity=0.063  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 006010           83 DSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLN  162 (664)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  162 (664)
                      ...+......+.+.|++++|...|+.+.+..+ .+..++..++.++...|++++|+..|++.++.  .+.+...|..++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~   80 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence            34566666777777777777777777776553 35566777777777777777777777776654  3445666777777


Q ss_pred             HHHHcCCHhHHHHHHHHHHh
Q 006010          163 VIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       163 ~~~~~~~~~~A~~~~~~~~~  182 (664)
                      ++...|++++|...|+++.+
T Consensus        81 ~~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           81 AQIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHH
Confidence            77777777777777777665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.43  E-value=2.3e-06  Score=70.89  Aligned_cols=101  Identities=11%  Similarity=-0.012  Sum_probs=82.2

Q ss_pred             CcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010          504 KPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC  582 (664)
Q Consensus       504 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  582 (664)
                      .|+ ...+..+...+.+.|++++|...|++++...|.   +...|..+..++...|++++|+..++++++  +.|+....
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~   88 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRF   88 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHH
Confidence            343 456777888899999999999999999876655   778899999999999999999999999998  45654433


Q ss_pred             HHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          583 NIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       583 ~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      ...+..                    ++...|++++|.+.++++.+.
T Consensus        89 ~~~lg~--------------------~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           89 PFHAAE--------------------CHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHH--------------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH--------------------HHHHcCCHHHHHHHHHHHHHh
Confidence            332322                    399999999999999999875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.41  E-value=3.8e-07  Score=80.78  Aligned_cols=123  Identities=10%  Similarity=-0.008  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCC--CC-----------HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQ--PD-----------VFTYNILLNALCKQSNISHSIDLLNSMMDRGC  575 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  575 (664)
                      .+..+...+...|++++|+..|++++...+...  ..           ...|..+..+|...|++++|+..++++++  .
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~  117 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--I  117 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h
Confidence            444555555555666666666665543322210  00           14455555566666666666666666665  2


Q ss_pred             CCCHH-HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHH
Q 006010          576 DPDLV-TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAA  654 (664)
Q Consensus       576 ~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  654 (664)
                      .|+.. .+..+.                     .++...|++++|.+.++++.+. .+.++..+..+..++...|+.+++
T Consensus       118 ~p~~~~~~~~lg---------------------~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~  175 (198)
T 2fbn_A          118 DKNNVKALYKLG---------------------VANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCVNKLKEARKK  175 (198)
T ss_dssp             STTCHHHHHHHH---------------------HHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             CcccHHHHHHHH---------------------HHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHH
Confidence            33322 222222                     2256666666666666666553 223445556666666665655555


Q ss_pred             H
Q 006010          655 I  655 (664)
Q Consensus       655 ~  655 (664)
                      .
T Consensus       176 ~  176 (198)
T 2fbn_A          176 D  176 (198)
T ss_dssp             -
T ss_pred             H
Confidence            4

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.41  E-value=4.7e-06  Score=70.99  Aligned_cols=103  Identities=13%  Similarity=0.048  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHH
Q 006010          471 NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNIL  550 (664)
Q Consensus       471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  550 (664)
                      +...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++++...+.   +...|..+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l   85 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---YSKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence            44567777778888888888888888887753 235677778888888888888888888888766554   56777788


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010          551 LNALCKQSNISHSIDLLNSMMDRGCDPDL  579 (664)
Q Consensus       551 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  579 (664)
                      ..+|...|++++|...|++.++  +.|+.
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~--~~p~~  112 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIE--AEGNG  112 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HHSSS
T ss_pred             HHHHHHccCHHHHHHHHHHHHH--hCCCc
Confidence            8888888888888888888876  34443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.39  E-value=7.1e-06  Score=67.29  Aligned_cols=96  Identities=17%  Similarity=0.069  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHH
Q 006010          472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILL  551 (664)
Q Consensus       472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  551 (664)
                      ...+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|...+++++...+.   +...|..+.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~   84 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFLG   84 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHHHHHHH
Confidence            3344444444444444444444444444331 112334444444444444444444444444333222   333444444


Q ss_pred             HHHHHcCChhHHHHHHHHHH
Q 006010          552 NALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       552 ~~~~~~g~~~~A~~~~~~~~  571 (664)
                      .++...|++++|...++++.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHH
Confidence            44444444444444444444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.35  E-value=1.4e-05  Score=63.27  Aligned_cols=101  Identities=12%  Similarity=0.046  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010          473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN  552 (664)
Q Consensus       473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  552 (664)
                      ..+..+...+...|++++|...+++..... +.+...+..++..+...|++++|...+++++...+.   +...+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~   80 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHHHHHHHH
Confidence            345556666667777777777777766542 234566666777777777777777777777654333   4556666777


Q ss_pred             HHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010          553 ALCKQSNISHSIDLLNSMMDRGCDPDL  579 (664)
Q Consensus       553 ~~~~~g~~~~A~~~~~~~~~~~~~p~~  579 (664)
                      ++...|++++|...+++..+  ..|+.
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~--~~~~~  105 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLK--HEANN  105 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT--TCTTC
T ss_pred             HHHHHhhHHHHHHHHHHHHH--cCCCC
Confidence            77777777777777777765  34443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.35  E-value=7.7e-06  Score=72.22  Aligned_cols=96  Identities=18%  Similarity=0.092  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010          473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN  552 (664)
Q Consensus       473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  552 (664)
                      ..+..+..++...|++++|+..+++.+... +.+...+..+..+|...|++++|...|++++...+.   +...+..+..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~  164 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN---NLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHH
Confidence            566677777888888888888888887753 335677788888888888888888888888765554   5667777777


Q ss_pred             HHHHcCChhHHH-HHHHHHHH
Q 006010          553 ALCKQSNISHSI-DLLNSMMD  572 (664)
Q Consensus       553 ~~~~~g~~~~A~-~~~~~~~~  572 (664)
                      ++...++.+++. ..+..|..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          165 CVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            777777666666 45555554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.35  E-value=4.1e-06  Score=66.94  Aligned_cols=98  Identities=15%  Similarity=0.123  Sum_probs=70.1

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH
Q 006010          475 YSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNAL  554 (664)
Q Consensus       475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~  554 (664)
                      +..+...+...|++++|...++++++.. +.+...|..+..++...|++++|+..|++++..+|.   +...+..+..++
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~la~~~   95 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAALAVSH   95 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence            4445666777888888888888877752 235667777788888888888888888888766555   566777777888


Q ss_pred             HHcCChhHHHHHHHHHHHCCCCCC
Q 006010          555 CKQSNISHSIDLLNSMMDRGCDPD  578 (664)
Q Consensus       555 ~~~g~~~~A~~~~~~~~~~~~~p~  578 (664)
                      ...|++++|+..++++++  ..|+
T Consensus        96 ~~~g~~~~A~~~~~~al~--~~P~  117 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLL--SQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC------
T ss_pred             HHcCCHHHHHHHHHHHHH--hCcC
Confidence            888888888888888775  4444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.35  E-value=7.9e-06  Score=66.99  Aligned_cols=103  Identities=15%  Similarity=0.030  Sum_probs=91.2

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHH
Q 006010          434 AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSM  513 (664)
Q Consensus       434 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  513 (664)
                      +.+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.+... +.+...+..+
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   83 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   83 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence            4578889999999999999999999999998876 5678889999999999999999999999999864 3357789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010          514 IHGLCNAGSVEEALKLFNEMLCLEP  538 (664)
Q Consensus       514 ~~~~~~~g~~~~A~~~~~~~~~~~~  538 (664)
                      ..++...|++++|...|++++...+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHCh
Confidence            9999999999999999999976544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.34  E-value=3.9e-06  Score=68.08  Aligned_cols=117  Identities=11%  Similarity=0.146  Sum_probs=87.6

Q ss_pred             HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HH
Q 006010          507 VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGC--DPD----LV  580 (664)
Q Consensus       507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~  580 (664)
                      ...+..++..+...|++++|...|++++...+.   +...+..+...+...|++++|...++++.+...  .++    ..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            356777888888999999999999998765443   667788888899999999999999999886311  111    12


Q ss_pred             HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccc
Q 006010          581 TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPK  649 (664)
Q Consensus       581 ~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  649 (664)
                      .+.                     .++.++...|++++|.+.++++.+.  .|++..+..+.......+
T Consensus        81 ~~~---------------------~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           81 AYA---------------------RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHH---------------------HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHH
T ss_pred             HHH---------------------HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHH
Confidence            222                     3445599999999999999999984  567877777766654433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.33  E-value=2.2e-05  Score=62.06  Aligned_cols=94  Identities=11%  Similarity=0.017  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010          121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK  200 (664)
Q Consensus       121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~  200 (664)
                      +..++..+...|++++|++.|+.....  .+.+...+..++..+...|++++|...++++.+..    +.+...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~   80 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----PDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC----cccHHHHHHHHH
Confidence            334444444444444444444444332  22234444444444444444444444444444311    012333344444


Q ss_pred             HHHhcCChhHHHHHHhhccc
Q 006010          201 TVCRLGLVDNAIQLFREMPV  220 (664)
Q Consensus       201 ~~~~~g~~~~A~~~~~~~~~  220 (664)
                      ++...|++++|.+.++...+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            44444444444444444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.33  E-value=1.2e-05  Score=68.54  Aligned_cols=99  Identities=11%  Similarity=-0.051  Sum_probs=84.9

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL  161 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  161 (664)
                      +...+..+...+...|+++.|...|++++...+. +..++..+..+|...|++++|+..|++.+..  .+.+...|..+.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg   86 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            4567888888999999999999999999887643 6778889999999999999999999998775  455688899999


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhc
Q 006010          162 NVIIQEGLYHRALEFYNHIVNA  183 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~  183 (664)
                      .++...|++++|...|+++++.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999999998873

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=2.4e-05  Score=65.02  Aligned_cols=106  Identities=14%  Similarity=0.013  Sum_probs=77.8

Q ss_pred             CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh
Q 006010          470 YNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD----VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF  545 (664)
Q Consensus       470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  545 (664)
                      .+...+..+...+...|++++|...|++.++.  .|+    ...+..+..++...|++++|+..+++++...+.   +..
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~  100 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---DVK  100 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---CHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---CHH
Confidence            34556777777778888888888888887764  444    566777778888888888888888888655443   566


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010          546 TYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC  582 (664)
Q Consensus       546 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  582 (664)
                      .|..+..++...|++++|...+++..+  ..|+....
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~  135 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVF  135 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHH
Confidence            777777888888888888888888877  45554433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.28  E-value=6.2e-06  Score=65.89  Aligned_cols=95  Identities=6%  Similarity=-0.097  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVI  164 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (664)
                      .+..+...+.+.|++++|...|+++++..+ .+..++..+..++...|++++|+..|++.++.  .+.+...+..++.++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH   95 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            456667778888888888888888887764 36778888888888888888888888888765  345677888888888


Q ss_pred             HHcCCHhHHHHHHHHHHh
Q 006010          165 IQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       165 ~~~~~~~~A~~~~~~~~~  182 (664)
                      ...|++++|+..|+++++
T Consensus        96 ~~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            888888888888888876

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.28  E-value=7.8e-06  Score=66.23  Aligned_cols=98  Identities=13%  Similarity=0.088  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCC----HHHHH
Q 006010           84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHC-KRT----VKSFN  158 (664)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~  158 (664)
                      ..+..+...+...|+++.|...|+.+....+ .+...+..++..+...|++++|+..|...+...+. .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            3445555555555555555555555555432 23445555555555555555555555555442110 111    44455


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          159 SVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       159 ~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      .++..+...|++++|...|+.+.+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHH
Confidence            555555555555555555555544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.27  E-value=2.8e-05  Score=78.42  Aligned_cols=98  Identities=6%  Similarity=-0.058  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhC--C--CCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC----H
Q 006010          474 CYSVLIHGLCEDGKLREARMVWTQMLSR--G--CKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD----V  544 (664)
Q Consensus       474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~  544 (664)
                      ++..+...+...|++++|..+++++...  +  -.+. ..++..++..|...|++++|..++++++...+....+    .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            4444555555555555555555554321  0  0111 2345555555666666666666665554322211111    1


Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          545 FTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      ..+..++..+...|++++|...+.+..
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            233344444455556666655555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.26  E-value=9.1e-06  Score=63.67  Aligned_cols=98  Identities=11%  Similarity=-0.010  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010          473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN  552 (664)
Q Consensus       473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  552 (664)
                      ..+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...+++++...+. ..+...|..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHH
Confidence            344445555555566666666665555432 223445555555666666666666666665433222 113445555555


Q ss_pred             HHHHc-CChhHHHHHHHHHHH
Q 006010          553 ALCKQ-SNISHSIDLLNSMMD  572 (664)
Q Consensus       553 ~~~~~-g~~~~A~~~~~~~~~  572 (664)
                      ++... |++++|.+.+++..+
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHhCCHHHHHHHHHHHhh
Confidence            66666 666666666666654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.24  E-value=1.2e-05  Score=62.99  Aligned_cols=98  Identities=10%  Similarity=0.022  Sum_probs=63.1

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--CHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKR--TVKSFNS  159 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~  159 (664)
                      +...+..+...+...|++++|...++++.+..+ .+...+..++.++...|++++|++.|++.++.  .+.  +...+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~   81 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA   81 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence            344556666666777777777777777666543 24556666666677777777777777766554  223  4666666


Q ss_pred             HHHHHHHc-CCHhHHHHHHHHHHh
Q 006010          160 VLNVIIQE-GLYHRALEFYNHIVN  182 (664)
Q Consensus       160 l~~~~~~~-~~~~~A~~~~~~~~~  182 (664)
                      +...+.+. |++++|.+.++.+..
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhh
Confidence            66667777 777777777766655

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.24  E-value=4.5e-05  Score=76.89  Aligned_cols=167  Identities=7%  Similarity=-0.057  Sum_probs=81.5

Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHhCCCCcC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 006010           87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVL----------------EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHC  150 (664)
Q Consensus        87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  150 (664)
                      ..-.+.+.+.|++++|.+.|..+.+......                ..++..++..|...|++++|.+.+..+.+..+.
T Consensus         8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~   87 (434)
T 4b4t_Q            8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ   87 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            3345666777888888888877776533211                124566777777777777777777766543222


Q ss_pred             CCCHH----HHHHHHHHHHHcCCHhHHHHHHHHHHhccc-CCCCcC-HHHHHHHHHHHHhcCChhHHHHHHhhcccC--C
Q 006010          151 KRTVK----SFNSVLNVIIQEGLYHRALEFYNHIVNAKH-MNILPN-TLTFNLVIKTVCRLGLVDNAIQLFREMPVR--N  222 (664)
Q Consensus       151 ~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~  222 (664)
                      .++..    ..+.+...+...|++++|..+++....... .+..+. ..++..+...+...|++++|..+++++...  +
T Consensus        88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~  167 (434)
T 4b4t_Q           88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK  167 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence            22211    222233333344566666666655543100 011111 223444555555555555555555443221  0


Q ss_pred             C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          223 C---EPDIYTYCTLMDGLCKENRLDEAVLLLDEM  253 (664)
Q Consensus       223 ~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  253 (664)
                      .   +....++..++..|...|++++|..++++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  201 (434)
T 4b4t_Q          168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA  201 (434)
T ss_dssp             SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            0   001233444444444455555544444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.23  E-value=2.3e-05  Score=63.37  Aligned_cols=98  Identities=10%  Similarity=0.121  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHH
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL--EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVL  161 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~  161 (664)
                      ++..+...+...|+++.|...|+.+.+..+...  ..++..++.++...|++++|+..|+.++...+..+. ..++..++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            345566667777777777777777776543322  146666777777777777777777776654221111 45666677


Q ss_pred             HHHHHcCCHhHHHHHHHHHHh
Q 006010          162 NVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      .++.+.|++++|...|+.+.+
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            777777777777777777765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.22  E-value=4e-05  Score=63.62  Aligned_cols=101  Identities=14%  Similarity=0.099  Sum_probs=70.1

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhH
Q 006010          435 ANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN----EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY  510 (664)
Q Consensus       435 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  510 (664)
                      .+...+..+...+...|++++|.+.|++..+..  |+    ...+..+...+...|++++|...+++.+... +.+...+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            345566666667777777777777777776654  33    4566667777777788888888887777642 2345667


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010          511 SSMIHGLCNAGSVEEALKLFNEMLCLEP  538 (664)
Q Consensus       511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (664)
                      ..+..++...|++++|...|++++...+
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p  130 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEP  130 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            7777778888888888888888765443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.21  E-value=1.8e-05  Score=67.07  Aligned_cols=110  Identities=15%  Similarity=0.117  Sum_probs=78.0

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhC--------C--------CCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcC
Q 006010          475 YSVLIHGLCEDGKLREARMVWTQMLSR--------G--------CKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLE  537 (664)
Q Consensus       475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~--------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (664)
                      +......+.+.|++++|+..|.+.+..        .        ..| +...|..+..+|.+.|++++|+..+++++..+
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~   93 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE   93 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence            334444555555555555555554442        0        012 24578888899999999999999999998766


Q ss_pred             CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHhh
Q 006010          538 PKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV-TCNIFLTAL  589 (664)
Q Consensus       538 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~  589 (664)
                      +.   +...|..+..+|...|++++|...|++.++  +.|+.. .....+..+
T Consensus        94 p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           94 ET---NEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIV  141 (162)
T ss_dssp             TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred             Cc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Confidence            55   677888899999999999999999999998  577765 555555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.20  E-value=3.8e-06  Score=66.76  Aligned_cols=85  Identities=12%  Similarity=0.092  Sum_probs=60.6

Q ss_pred             CCChHHHHHHHHHHHhCCC-Cc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhH
Q 006010          485 DGKLREARMVWTQMLSRGC-KP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH  562 (664)
Q Consensus       485 ~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  562 (664)
                      .|++++|+..|++.++.+. .| +...+..+..+|...|++++|+..|++++...|.   +...+..+..++...|++++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---HQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCCHHH
Confidence            5677778888888776431 13 3456777888888888888888888888766555   56677778888888888888


Q ss_pred             HHHHHHHHHH
Q 006010          563 SIDLLNSMMD  572 (664)
Q Consensus       563 A~~~~~~~~~  572 (664)
                      |+..+++.++
T Consensus        80 A~~~~~~al~   89 (117)
T 3k9i_A           80 GVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888876

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.20  E-value=2.6e-05  Score=63.00  Aligned_cols=92  Identities=13%  Similarity=0.103  Sum_probs=39.5

Q ss_pred             HHHHHcCCChHHHHHHHHHHHhCCCCcC-H---HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH
Q 006010          479 IHGLCEDGKLREARMVWTQMLSRGCKPD-V---VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNAL  554 (664)
Q Consensus       479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~  554 (664)
                      ...+...|++++|...|+++++..  |+ .   ..+..++.++...|++++|...|++++...+........+..+..++
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            334444455555555555444421  11 1   23444444444455555555555444433222111123344444444


Q ss_pred             HHcCChhHHHHHHHHHHH
Q 006010          555 CKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       555 ~~~g~~~~A~~~~~~~~~  572 (664)
                      ...|++++|...++++.+
T Consensus        87 ~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            444444455444444444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.20  E-value=8.6e-06  Score=79.60  Aligned_cols=96  Identities=6%  Similarity=-0.038  Sum_probs=66.4

Q ss_pred             CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHH
Q 006010          543 DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFK  621 (664)
Q Consensus       543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  621 (664)
                      +...|..+..+|.+.|++++|+..++++++  +.|+... +..+.                     .+|...|++++|.+
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg---------------------~~~~~~g~~~eA~~  328 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRA---------------------QGWQGLKEYDQALA  328 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHH---------------------HHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHH---------------------HHHHHccCHHHHHH
Confidence            345677777888888888888888888886  4555332 22222                     23888888888888


Q ss_pred             HHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          622 IVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                      .++++.+. .+.+...+..+..++...|+.++|.+...+.+
T Consensus       329 ~l~~Al~l-~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~km  368 (370)
T 1ihg_A          329 DLKKAQEI-APEDKAIQAELLKVKQKIKAQKDKEKAAYAKM  368 (370)
T ss_dssp             HHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888875 23366778888888888888888876654433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.19  E-value=4.6e-06  Score=70.71  Aligned_cols=137  Identities=10%  Similarity=-0.041  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHH
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP---DVFTYNILLNALCKQSNISHSIDLLNSMMDRGC-DPDLVTCNI  584 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~  584 (664)
                      ++..+...+...|++++|...+++++...+....   ....+..+...+...|++++|...+++..+... .++......
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4445555555555555555555555432111000   012445555556666666666666666553100 011111000


Q ss_pred             HHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc----CCCC-ChHHHHHHHHHhcccchHHHHHHHHH
Q 006010          585 FLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK----FLSP-QTSTWERVVQELCRPKRIQAAINKCW  659 (664)
Q Consensus       585 ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~  659 (664)
                                       .+..++.++...|++++|.+.+++..+.    +..+ ....+..++..+...|++++|++.+.
T Consensus        91 -----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  153 (164)
T 3ro3_A           91 -----------------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE  153 (164)
T ss_dssp             -----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence                             0112344466666666666666666543    1010 12445566666777777777777666


Q ss_pred             hhh
Q 006010          660 SNL  662 (664)
Q Consensus       660 ~~l  662 (664)
                      +.+
T Consensus       154 ~a~  156 (164)
T 3ro3_A          154 KHL  156 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.16  E-value=1.7e-05  Score=80.31  Aligned_cols=150  Identities=13%  Similarity=0.099  Sum_probs=96.8

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC----------------HHhHHHHHH
Q 006010          452 KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD----------------VVAYSSMIH  515 (664)
Q Consensus       452 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~  515 (664)
                      ++++|.+.|+...... +.....+..+...+.+.|++++|...|+++++.  .|+                ...|..+..
T Consensus       249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            4444544443332221 223456777788888888888888888888774  233                467778888


Q ss_pred             HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccC
Q 006010          516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEA  595 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~  595 (664)
                      +|.+.|++++|+..+++++..++.   +...|..+..+|...|++++|+..|+++++  +.|+.......+..       
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~-------  393 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISM-------  393 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHH-------
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH-------
Confidence            888888888888888888766554   667777888888888888888888888886  56655433333333       


Q ss_pred             CCCchhhhHHHHHHhhhcCCcchHH-HHHHHHHHc
Q 006010          596 PQDGTDFLNELAIRLFKRQRTSGGF-KIVEVMLQK  629 (664)
Q Consensus       596 ~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~  629 (664)
                                   ++.+.|+++++. ..+++|..+
T Consensus       394 -------------~~~~~~~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          394 -------------CQKKAKEHNERDRRIYANMFKK  415 (457)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHC---
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHhh
Confidence                         266677776655 345555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.12  E-value=2.1e-05  Score=66.42  Aligned_cols=134  Identities=13%  Similarity=0.082  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCc-CHH
Q 006010          439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCV-YN----EVCYSVLIHGLCEDGKLREARMVWTQMLSR----GCKP-DVV  508 (664)
Q Consensus       439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~  508 (664)
                      ++..+...+...|++++|.+.+++..+.... .+    ..++..+...+...|++++|...+++..+.    +..+ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444444555555555555555554432100 11    135556666777777777777777766542    1111 134


Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQ---PDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      ++..+...+...|++++|...+++++.......   .....+..+...+...|++++|.+.+++..+
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            567777788888888888888888754321111   1133566777788888999999888888775

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.12  E-value=6.2e-06  Score=83.77  Aligned_cols=89  Identities=9%  Similarity=0.068  Sum_probs=55.6

Q ss_pred             HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010          480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN  559 (664)
Q Consensus       480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  559 (664)
                      ..+...|++++|.+.+++.++.. +.+..+|..+..+|.+.|++++|+..++++++..+.   +...|..+..+|...|+
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCC
Confidence            34556666777777776666542 223556666666666667777777776666554433   45566666666666666


Q ss_pred             hhHHHHHHHHHHH
Q 006010          560 ISHSIDLLNSMMD  572 (664)
Q Consensus       560 ~~~A~~~~~~~~~  572 (664)
                      +++|.+.++++.+
T Consensus        90 ~~eA~~~~~~al~  102 (477)
T 1wao_1           90 FRAALRDYETVVK  102 (477)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666665

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.11  E-value=7.9e-06  Score=83.02  Aligned_cols=120  Identities=13%  Similarity=0.018  Sum_probs=68.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 006010          410 DGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR  489 (664)
Q Consensus       410 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  489 (664)
                      ..+.+.|++++|.+.++++++.. +.+...+..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            34555666777777777666653 4456666666666666666666666666666654 345556666666666666666


Q ss_pred             HHHHHHHHHHhCCCCcCHHhHHHHHHH--HHHcCCHHHHHHHHHH
Q 006010          490 EARMVWTQMLSRGCKPDVVAYSSMIHG--LCNAGSVEEALKLFNE  532 (664)
Q Consensus       490 ~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~  532 (664)
                      +|.+.++++++.. +.+...+..+..+  +.+.|++++|++.+++
T Consensus        92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            6666666666542 1122334444333  5556666666666653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.11  E-value=1e-05  Score=64.20  Aligned_cols=86  Identities=10%  Similarity=0.000  Sum_probs=67.6

Q ss_pred             hCCCcchHHHHHHHHHhCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006010           95 NSGDFKSLEMVLYRMRREK--RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHR  172 (664)
Q Consensus        95 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  172 (664)
                      ..|++++|...|+++++.+  .+.+..++..++.+|...|++++|++.|++.++.  .+.+...+..++.++.+.|++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence            3578889999999988764  2445667888889999999999999999998776  45567888888999999999999


Q ss_pred             HHHHHHHHHh
Q 006010          173 ALEFYNHIVN  182 (664)
Q Consensus       173 A~~~~~~~~~  182 (664)
                      |...+++.+.
T Consensus        80 A~~~~~~al~   89 (117)
T 3k9i_A           80 GVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998877

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.09  E-value=1.8e-05  Score=65.03  Aligned_cols=91  Identities=12%  Similarity=0.069  Sum_probs=65.6

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhCCCCcC-------------HHhHHHHHHHHHHcCCHHHHHHHHHHhhhc-------
Q 006010          477 VLIHGLCEDGKLREARMVWTQMLSRGCKPD-------------VVAYSSMIHGLCNAGSVEEALKLFNEMLCL-------  536 (664)
Q Consensus       477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------  536 (664)
                      .....+...|++++|+..|++.++.  .|+             ...|..+..++.+.|++++|+..+++++..       
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3444455556666666666655543  222             237888888888888888888888888765       


Q ss_pred             CCCCCCCHhHH----HHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          537 EPKSQPDVFTY----NILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       537 ~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      +|+   +...|    .....++...|++++|+..|++.++
T Consensus        94 ~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           94 NQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            443   55577    8888889999999999999999886

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.09  E-value=4.1e-05  Score=77.42  Aligned_cols=125  Identities=11%  Similarity=0.008  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-------------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcc
Q 006010          118 EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-------------VKSFNSVLNVIIQEGLYHRALEFYNHIVNAK  184 (664)
Q Consensus       118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  184 (664)
                      ...+..+...+.+.|++++|+..|.+.+...+..+.             ...|..+..++.+.|++++|+..|+++++..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            334555555555555555555555555443111110             3555556666666666666666666665521


Q ss_pred             cCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006010          185 HMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAV  247 (664)
Q Consensus       185 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  247 (664)
                          +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.++.+++.
T Consensus       348 ----p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          348 ----SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence                1134455555556666666666666666655543 333445555555555555555444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.09  E-value=4.5e-05  Score=64.64  Aligned_cols=98  Identities=10%  Similarity=-0.057  Sum_probs=76.7

Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHhC--------C---------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006010           83 DSTFYSLIQHYANSGDFKSLEMVLYRMRRE--------K---------RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMV  145 (664)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  145 (664)
                      ...+......+.+.|+++.|...|..++..        .         .+....++..++.+|.+.|++++|+..++..+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456777888999999999999999988865        1         12233567788888888888888888888877


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          146 DEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      ..  .+.++.+|..++.++...|++++|...|++.++
T Consensus        91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            65  455677888888888888888888888888877

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.04  E-value=0.00032  Score=72.56  Aligned_cols=163  Identities=7%  Similarity=0.028  Sum_probs=122.8

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-
Q 006010          418 PDEAEEILFEMINNGCAANAFTYSSLMKGFFESGK----------GHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG-  486 (664)
Q Consensus       418 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-  486 (664)
                      .++|.+.+++++..+ +.+..+|+.--..+...|+          ++++++.++.+.+.. +.+..+|+.-...+.+.| 
T Consensus        45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            356677777777764 4456666665555555555          788899999988876 677888888888888888 


Q ss_pred             -ChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC-CHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc-------
Q 006010          487 -KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG-SVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ-------  557 (664)
Q Consensus       487 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------  557 (664)
                       +++++++.++++++.. +-+..+|+.-..++.+.| .++++++.+++++..++.   |...|+.....+.+.       
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~---n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS---NYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC---CHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC---CccHHHHHHHHHHhhccccccc
Confidence             6799999999999864 346788888888888888 899999999999765554   778888887777663       


Q ss_pred             -------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          558 -------SNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       558 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                             +.++++++.+++++.  +.|+....-...+.
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~  234 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRW  234 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHH
Confidence                   557899999999987  56765543333444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.03  E-value=5.7e-05  Score=73.74  Aligned_cols=140  Identities=11%  Similarity=-0.001  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010          402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG  481 (664)
Q Consensus       402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  481 (664)
                      ...+..+...+.+.|++++|...|+++++.-  +..          ......       +...... +.+..+|..+..+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~~-~~~~~~~~nla~~  282 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKLQ-PVALSCVLNIGAC  282 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGGH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHHH-HHHHHHHHHHHHH
Confidence            3445556666666777777777766665420  000          000000       0011111 2345567777888


Q ss_pred             HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChh
Q 006010          482 LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNIS  561 (664)
Q Consensus       482 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  561 (664)
                      |.+.|++++|+..++++++.. +.+...+..+..+|...|++++|+..|+++++..+.   +...+..+..++...++.+
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~---~~~~~~~l~~~~~~~~~~~  358 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE---DKAIQAELLKVKQKIKAQK  358 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888753 234677888888888888888888888888766554   5666777777777766666


Q ss_pred             HHHH
Q 006010          562 HSID  565 (664)
Q Consensus       562 ~A~~  565 (664)
                      ++.+
T Consensus       359 ~a~k  362 (370)
T 1ihg_A          359 DKEK  362 (370)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.01  E-value=2.2e-05  Score=75.82  Aligned_cols=148  Identities=15%  Similarity=0.052  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010          402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG  481 (664)
Q Consensus       402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  481 (664)
                      ...+..+...+.+.|++++|...|++++...  |+...       +...++.+++...+.          ..+|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            4455566666677777777777777776542  22221       122223333322211          1367778889


Q ss_pred             HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH-HHHcCCh
Q 006010          482 LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNA-LCKQSNI  560 (664)
Q Consensus       482 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~  560 (664)
                      +.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++++...+.   +...+..+... ....+..
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~---~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD---DKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998753 335778899999999999999999999999654443   44455555554 3345677


Q ss_pred             hHHHHHHHHHHH
Q 006010          561 SHSIDLLNSMMD  572 (664)
Q Consensus       561 ~~A~~~~~~~~~  572 (664)
                      +++...|++|..
T Consensus       316 ~~a~~~~~~~l~  327 (338)
T 2if4_A          316 QKQKEMYKGIFK  327 (338)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHhhC
Confidence            788888988886

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.01  E-value=1.5e-05  Score=76.96  Aligned_cols=150  Identities=13%  Similarity=0.026  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHH
Q 006010          437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHG  516 (664)
Q Consensus       437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  516 (664)
                      ...+..+...+.+.|++++|...|++.....  |+...       +...|+.+++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            4455666666777777777777777766543  32221       223333333332221          1378889999


Q ss_pred             HHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCC
Q 006010          517 LCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAP  596 (664)
Q Consensus       517 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~  596 (664)
                      |.+.|++++|+..+++++...+.   +...|..+..+|...|++++|...|+++++  +.|+.......+..+.      
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~------  308 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALA------  308 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH------
Confidence            99999999999999999876654   678899999999999999999999999987  5676554444443321      


Q ss_pred             CCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          597 QDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       597 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                                   ....+..+++.++|++|...
T Consensus       309 -------------~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          309 -------------EQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             ---------------------------------
T ss_pred             -------------HHHHHHHHHHHHHHHHhhCC
Confidence                         33456778888899988764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.98  E-value=0.00036  Score=72.18  Aligned_cols=174  Identities=10%  Similarity=0.036  Sum_probs=133.2

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006010          382 KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGK----------PDEAEEILFEMINNGCAANAFTYSSLMKGFFESG  451 (664)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  451 (664)
                      ..++|++.++++...+.. +..+|+.-..++...|+          ++++.+.++.+++.. +.+..+|..-.-.+.+.+
T Consensus        44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence            356778888888876433 45566666666666666          788888888888865 667788877777777888


Q ss_pred             --ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc--------
Q 006010          452 --KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG-KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA--------  520 (664)
Q Consensus       452 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------  520 (664)
                        +++++++.++++.+.+ +.+..+|+.-...+...| .++++++.++++++.. .-+..+|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence              5689999999998877 567888888877788888 8899999999988764 33667788777776663        


Q ss_pred             ------CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhH
Q 006010          521 ------GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH  562 (664)
Q Consensus       521 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  562 (664)
                            +.++++++.+++++..+|.   |...|..+...+.+.++.++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~---~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPN---DQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSS---CSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCC---CccHHHHHHHHHhcCCCccc
Confidence                  5689999999999877776   77888888888877777544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.98  E-value=7.4e-05  Score=61.40  Aligned_cols=29  Identities=14%  Similarity=-0.015  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 006010          155 KSFNSVLNVIIQEGLYHRALEFYNHIVNA  183 (664)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  183 (664)
                      ..+...+..+.+.|++++|+..|++.++.
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l   40 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEI   40 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            45566677777788888888888887763

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.92  E-value=4.6e-05  Score=62.47  Aligned_cols=99  Identities=17%  Similarity=0.107  Sum_probs=71.4

Q ss_pred             CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCC----------HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH
Q 006010          485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGS----------VEEALKLFNEMLCLEPKSQPDVFTYNILLNAL  554 (664)
Q Consensus       485 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~  554 (664)
                      .+.+++|++.++..++.. +.+...|..+..++...++          +++|+..|+++++++|.   +...|..+..+|
T Consensus        15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~LG~ay   90 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHHHHHHH
Confidence            345666666666666643 2345666666666666554          46899999998877666   677888888888


Q ss_pred             HHcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010          555 CKQS-----------NISHSIDLLNSMMDRGCDPDLVTCNIFLTAL  589 (664)
Q Consensus       555 ~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~  589 (664)
                      ...|           ++++|++.|+++++  +.|+...|...+..+
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            7764           89999999999998  788887776666653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.87  E-value=3.2e-05  Score=60.42  Aligned_cols=94  Identities=12%  Similarity=0.087  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC------
Q 006010          118 EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN------  191 (664)
Q Consensus       118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------  191 (664)
                      ...+..++..+...|++++|++.|++.+..  .+.+...|..++.++.+.|++++|+..|+++++     ..|+      
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~   76 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR-----YTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SCSSTTSHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCccHHHH
Confidence            345666777777777777777777777654  345667777777777777888888877777766     2333      


Q ss_pred             -HHHHHHHHHHHHhcCChhHHHHHHhhc
Q 006010          192 -TLTFNLVIKTVCRLGLVDNAIQLFREM  218 (664)
Q Consensus       192 -~~~~~~ll~~~~~~g~~~~A~~~~~~~  218 (664)
                       ...+..+..++...|+++.|.+.++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence             334555555666666666665555544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.78  E-value=3.5e-05  Score=60.19  Aligned_cols=69  Identities=14%  Similarity=0.231  Sum_probs=47.4

Q ss_pred             CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010          506 DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL  579 (664)
Q Consensus       506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  579 (664)
                      +...+..+...+...|++++|+..|++++...+.   +...|..+..++.+.|++++|+..++++++  +.|+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCc
Confidence            3455666777777777777777777777655443   556677777777777777777777777776  44543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.76  E-value=0.00066  Score=55.33  Aligned_cols=111  Identities=10%  Similarity=-0.044  Sum_probs=71.4

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----cCCHHHH
Q 006010          451 GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----AGSVEEA  526 (664)
Q Consensus       451 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A  526 (664)
                      +++++|.+.|++..+.+ .+...    +...|...+.+++|.+.|++..+.|   +...+..+...|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            34566666666666655 22222    5555556666677777777776653   45566666666666    6777777


Q ss_pred             HHHHHHhhhcCCCCCCCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 006010          527 LKLFNEMLCLEPKSQPDVFTYNILLNALCK----QSNISHSIDLLNSMMDRG  574 (664)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  574 (664)
                      ..+|+++.  +.+   +...+..|...|..    .+++++|..++++..+.|
T Consensus        81 ~~~~~~Aa--~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKAC--GLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHH--HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH--cCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            77777773  223   55666667777766    677777777777777654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.75  E-value=0.00028  Score=71.12  Aligned_cols=127  Identities=12%  Similarity=0.004  Sum_probs=86.5

Q ss_pred             HHHhcCChHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCcC-HHhHH
Q 006010          446 GFFESGKGHKAVEIWKDMAKNN---CVY----NEVCYSVLIHGLCEDGKLREARMVWTQMLSR-----G-CKPD-VVAYS  511 (664)
Q Consensus       446 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~  511 (664)
                      .+...|++++|+.++++..+..   ..+    ...+++.|...|...|++++|..++++.++.     | -.|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3456677777777777665421   112    2346777888888888888888888776642     2 2344 35688


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhcCC---C-CCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          512 SMIHGLCNAGSVEEALKLFNEMLCLEP---K-SQPD-VFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      .|+..|...|++++|+.++++++....   | ..|+ ..+.+.+..++...+.+++|..+++++.+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999998888853221   2 1122 23455566777888899999999999886

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.69  E-value=0.0003  Score=70.88  Aligned_cols=97  Identities=8%  Similarity=-0.063  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC-C
Q 006010          229 TYCTLMDGLCKENRLDEAVLLLDEMQVD-----G-CFPT-PVTFNVLINGLCKNGELGRAAKLVDNMFLK-----GCL-P  295 (664)
Q Consensus       229 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g~~-p  295 (664)
                      +++.|..+|...|++++|+.++++....     | -.|+ ..+++.|...|...|++++|+.++++....     |.. |
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp  432 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP  432 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            4455555555555555555555443321     1 0111 234555555555555555555555544321     221 1


Q ss_pred             C-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010          296 N-EVTYNTLIHGLCLKGNLDKAVSLLDRMVA  325 (664)
Q Consensus       296 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  325 (664)
                      + ..+...+..++...+.+++|..+|..+.+
T Consensus       433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 12333444455555556666666655554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.68  E-value=0.0005  Score=53.94  Aligned_cols=80  Identities=10%  Similarity=0.004  Sum_probs=60.8

Q ss_pred             chHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 006010          100 KSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNH  179 (664)
Q Consensus       100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  179 (664)
                      +.+...|+.+.+..+ .+...+..++.+|...|++++|+..|++.+..  .+.+...|..++.++...|++++|...|++
T Consensus         2 ~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            2 QAITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CCHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            356677777776653 36677888888888888888888888887765  345677788888888888888888888888


Q ss_pred             HHh
Q 006010          180 IVN  182 (664)
Q Consensus       180 ~~~  182 (664)
                      ..+
T Consensus        79 al~   81 (115)
T 2kat_A           79 GLA   81 (115)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            766

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.66  E-value=0.00011  Score=60.16  Aligned_cols=99  Identities=10%  Similarity=0.039  Sum_probs=74.6

Q ss_pred             hCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 006010           95 NSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLV----------EEAIRLFHTMVDEFHCKRTVKSFNSVLNVI  164 (664)
Q Consensus        95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (664)
                      +.+.+++|.+.+++..+.++. +...|..+..++...+++          ++|+..|++.++.  .+....+|..+..+|
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence            345678888888888887744 777888788788777654          5899999988775  455678888899988


Q ss_pred             HHcC-----------CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH
Q 006010          165 IQEG-----------LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKT  201 (664)
Q Consensus       165 ~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~  201 (664)
                      ...|           ++++|++.|+++++     +.|+...|...+..
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~-----l~P~~~~y~~al~~  133 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVD-----EQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHH-----hCCCCHHHHHHHHH
Confidence            8764           78899999998887     56766666555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.65  E-value=0.00095  Score=54.40  Aligned_cols=12  Identities=17%  Similarity=0.575  Sum_probs=4.7

Q ss_pred             HhHHHHHHHHHH
Q 006010          170 YHRALEFYNHIV  181 (664)
Q Consensus       170 ~~~A~~~~~~~~  181 (664)
                      +++|..+|++..
T Consensus        11 ~~~A~~~~~~aa   22 (138)
T 1klx_A           11 LKKAIQYYVKAC   22 (138)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333444444433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.61  E-value=0.00032  Score=55.07  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010          490 EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNS  569 (664)
Q Consensus       490 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  569 (664)
                      +|+..|++.++.. +.+...+..+...+...|++++|+..|++++...+.   +...|..+..+|...|++++|...|++
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4556666666542 234556666677777777777777777777654443   455666666677777777777777776


Q ss_pred             HHH
Q 006010          570 MMD  572 (664)
Q Consensus       570 ~~~  572 (664)
                      ..+
T Consensus        79 al~   81 (115)
T 2kat_A           79 GLA   81 (115)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.55  E-value=0.00083  Score=49.78  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH
Q 006010          474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNA  553 (664)
Q Consensus       474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  553 (664)
                      .+..+...+...|++++|...+++.++.. +.+...+..+..++...|++++|...+++++...+.   +...+..+..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~   86 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CHHHHHHHHHH
Confidence            44445555555555555555555555432 223445555555555666666666666655443332   33444444444


Q ss_pred             HH
Q 006010          554 LC  555 (664)
Q Consensus       554 ~~  555 (664)
                      +.
T Consensus        87 ~~   88 (91)
T 1na3_A           87 KQ   88 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.49  E-value=0.00032  Score=53.40  Aligned_cols=64  Identities=13%  Similarity=0.151  Sum_probs=36.0

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVD  146 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  146 (664)
                      ++.++..+...+...|++++|...|+++++.++. ...++..+..+|...|++++|++.|++.++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4455555556666666666666666665555433 333555555666666666666666555543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.48  E-value=0.0013  Score=48.66  Aligned_cols=61  Identities=18%  Similarity=0.251  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVD  146 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  146 (664)
                      .+..+...+...|++++|...++++....+ .+...+..+..++...|++++|+..|++.+.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            444444444455555555555555444332 2334444444444455555555555544433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.40  E-value=0.00072  Score=51.42  Aligned_cols=66  Identities=12%  Similarity=0.058  Sum_probs=52.3

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          115 VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      +.+..++..++.+|...|++++|++.|++.++.  .+.+..+|..+..++...|++++|...|++.++
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345667888888888888888888888888765  344567888888888888888888888888765

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.96  E-value=0.011  Score=55.95  Aligned_cols=74  Identities=12%  Similarity=-0.064  Sum_probs=57.7

Q ss_pred             CcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 006010          189 LPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFN  266 (664)
Q Consensus       189 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  266 (664)
                      +.+..+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.+++....  .|...+|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence            3456677777666777799999999999888875  67777878888888899999999999888775  46666654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.90  E-value=0.014  Score=55.27  Aligned_cols=74  Identities=15%  Similarity=0.111  Sum_probs=56.0

Q ss_pred             CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010          504 KPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCN  583 (664)
Q Consensus       504 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  583 (664)
                      +.+..+|..+...+...|++++|...+++++.++    |+...|..+...+.-.|++++|.+.++++..  +.|...+|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence            4456677777776777788888888888887653    5666677777788888888888888888887  677776653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.88  E-value=0.0048  Score=46.49  Aligned_cols=57  Identities=14%  Similarity=0.187  Sum_probs=37.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          124 IFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK-SFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      .+..+...|++++|++.|+..++.  .+.+.. .+..++.++...|++++|...|+++++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            445566667777777777776554  334555 666777777777777777777777766

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.84  E-value=0.0059  Score=45.99  Aligned_cols=56  Identities=29%  Similarity=0.414  Sum_probs=26.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh-HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          514 IHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF-TYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       514 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      +..+...|++++|+..|++++...+.   +.. .|..+..+|...|++++|...|++.++
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33444555555555555555433222   333 444444555555555555555555544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.84  E-value=0.0096  Score=58.96  Aligned_cols=99  Identities=7%  Similarity=0.014  Sum_probs=70.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhcCCCC-CCC----HhHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCHHHHHHH
Q 006010          514 IHGLCNAGSVEEALKLFNEMLCLEPKS-QPD----VFTYNILLNALCKQSNISHSIDLLNSMMDR---GCDPDLVTCNIF  585 (664)
Q Consensus       514 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l  585 (664)
                      +..+.+.|++++|+.++++++...... .|+    ..+++.++.+|...|++++|+.+++++++.   -..|+.......
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344567889999999999986543221 122    347888999999999999999999988841   233443332222


Q ss_pred             HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      +                 ..|+.+|...|++++|..+++++.+-
T Consensus       374 l-----------------~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          374 V-----------------MKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             H-----------------HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             H-----------------HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            2                 23556699999999999999998764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.83  E-value=0.0041  Score=61.47  Aligned_cols=93  Identities=8%  Similarity=-0.020  Sum_probs=63.8

Q ss_pred             cCCHHHHHHHHHHhhhcCCC----CCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHhhhh
Q 006010          520 AGSVEEALKLFNEMLCLEPK----SQPD-VFTYNILLNALCKQSNISHSIDLLNSMMD---RGCDPDLVTCNIFLTALKE  591 (664)
Q Consensus       520 ~g~~~~A~~~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~ll~~~~~  591 (664)
                      .|++++|+.++++.+.....    ..|+ ..+++.+..+|...|++++|+.+++++++   .-..|+.......+     
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l-----  385 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW-----  385 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH-----
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH-----
Confidence            46778888887777543221    1122 34788889999999999999999998874   12334433322222     


Q ss_pred             hccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          592 KLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       592 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                                  ..|+.+|...|++++|..+++++.+-
T Consensus       386 ------------~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          386 ------------LKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             ------------HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHhccCHHHHHHHHHHHHHH
Confidence                        23556699999999999999998764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.77  E-value=0.024  Score=41.88  Aligned_cols=67  Identities=10%  Similarity=0.056  Sum_probs=51.5

Q ss_pred             CCChhHHHHHHHHHHhCCC---cchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010           80 QLGDSTFYSLIQHYANSGD---FKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE  147 (664)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  147 (664)
                      +.++..+..+..++...++   .++|..+++++++.++. +..++..+...+.+.|++++|+..|+.+++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3467777777777764444   68888888888887743 7778888888888888888888888888765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.74  E-value=0.024  Score=41.95  Aligned_cols=65  Identities=15%  Similarity=0.032  Sum_probs=30.3

Q ss_pred             CCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010          470 YNEVCYSVLIHGLCEDGK---LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC  535 (664)
Q Consensus       470 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (664)
                      .+...+..+..++...++   .++|..++++.+... +-+......+...+...|++++|+..|++++.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344444444444432222   455555555555432 12234444455555555555555555555543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.68  E-value=0.28  Score=44.51  Aligned_cols=127  Identities=15%  Similarity=0.122  Sum_probs=83.9

Q ss_pred             cCChhHHHHHHhhcccCCCCCCHHHHHHHHHH-HHh--cCC------hhHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 006010          205 LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDG-LCK--ENR------LDEAVLLLDEMQVDGCFPT---PVTFNVLINGL  272 (664)
Q Consensus       205 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~g~------~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~  272 (664)
                      .|+..+-.+.+.+....  .+....|..++.. +..  .|+      ...|...+++..+.  .|+   ...|..+...|
T Consensus       134 ~~~~~~~~~~l~~~~~~--dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY  209 (301)
T 3u64_A          134 SGDEQRLHKVLSRCTRV--DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFY  209 (301)
T ss_dssp             SSCHHHHHHHHTTCCGG--GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHH
T ss_pred             hcchhhHHHHHHHcCcc--ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHH
Confidence            34444555555555433  1223345555442 222  233      35677777777774  455   55788888888


Q ss_pred             Hh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCC--CChhhH
Q 006010          273 CK-----NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLK-GNLDKAVSLLDRMVASKCM--PNEVTY  335 (664)
Q Consensus       273 ~~-----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~--~~~~~~  335 (664)
                      .+     -|+.++|.+.|++.+..+..-+..++......++.. |+.+++.+.+++.+.....  |+....
T Consensus       210 ~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~la  280 (301)
T 3u64_A          210 AAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLL  280 (301)
T ss_dssp             HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred             HhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHH
Confidence            88     489999999999998875433467777788888884 8999999999999987544  444333

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.66  E-value=0.0097  Score=58.94  Aligned_cols=92  Identities=14%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             HHhcCCHHHHHHHHHHhhhcCC--C----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcc---cCCCCcCH-HHHHH
Q 006010          128 YGKAHLVEEAIRLFHTMVDEFH--C----KRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAK---HMNILPNT-LTFNL  197 (664)
Q Consensus       128 ~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~-~~~~~  197 (664)
                      +.+.|++++|+.++++.+....  .    +....+++.++..|...|++++|+.++++++...   -....|++ .+++.
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            4455666666666666543211  1    1123456666666666666666666666654321   01223333 35666


Q ss_pred             HHHHHHhcCChhHHHHHHhhcc
Q 006010          198 VIKTVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       198 ll~~~~~~g~~~~A~~~~~~~~  219 (664)
                      +...|...|++++|..++++..
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Confidence            6666666666666666666553

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.15  Score=42.43  Aligned_cols=99  Identities=11%  Similarity=0.108  Sum_probs=54.2

Q ss_pred             HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006010          129 GKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLV  208 (664)
Q Consensus       129 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  208 (664)
                      ...|+++.|.++.+.+       .+...|..+.......|+++-|.++|.+...            +..+.-.|.-.|+.
T Consensus        16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTCH
T ss_pred             HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCCH
Confidence            4566666666665544       2455666666666666666666666666533            34444455555665


Q ss_pred             hHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010          209 DNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDE  252 (664)
Q Consensus       209 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  252 (664)
                      +.-.++-+.....|      -++.....+.-.|+++++.++|.+
T Consensus        77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55554444433333      133334444555666666666543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.57  E-value=0.39  Score=43.53  Aligned_cols=87  Identities=16%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcC-----CChHHHHHHHHHHHhCCCCc--CHHhHHHHHHHHHHc-CC
Q 006010          454 HKAVEIWKDMAKNNCVYN---EVCYSVLIHGLCED-----GKLREARMVWTQMLSRGCKP--DVVAYSSMIHGLCNA-GS  522 (664)
Q Consensus       454 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~  522 (664)
                      ..|...+++..+.+  |+   ...|..+...|...     |+.++|.+.|++.++.  .|  +..++......++.. |+
T Consensus       180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCC
Confidence            44555555555544  33   34566666666653     6666666666666653  33  244555555555553 66


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCH
Q 006010          523 VEEALKLFNEMLCLEPKSQPDV  544 (664)
Q Consensus       523 ~~~A~~~~~~~~~~~~~~~~~~  544 (664)
                      .++|.+.+++++...+...|+.
T Consensus       256 ~~~a~~~L~kAL~a~p~~~P~~  277 (301)
T 3u64_A          256 RAGFDEALDRALAIDPESVPHN  277 (301)
T ss_dssp             HHHHHHHHHHHHHCCGGGCSSC
T ss_pred             HHHHHHHHHHHHcCCCCCCCCh
Confidence            6666666666654333333443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.54  E-value=0.007  Score=59.82  Aligned_cols=86  Identities=6%  Similarity=-0.109  Sum_probs=37.6

Q ss_pred             CCHhHHHHHHHHHHhcccCCCCcC----HHHHHHHHHHHHhcCChhHHHHHHhhcccC-----C-CCCC-HHHHHHHHHH
Q 006010          168 GLYHRALEFYNHIVNAKHMNILPN----TLTFNLVIKTVCRLGLVDNAIQLFREMPVR-----N-CEPD-IYTYCTLMDG  236 (664)
Q Consensus       168 ~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~  236 (664)
                      |++++|+.++++.++....-+.|+    ..+++.+..+|...|++++|+.++++.+..     | -.|+ ..+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            455666666655544221222222    124455555555555555555555444321     1 0111 2234444444


Q ss_pred             HHhcCChhHHHHHHHHH
Q 006010          237 LCKENRLDEAVLLLDEM  253 (664)
Q Consensus       237 ~~~~g~~~~a~~~~~~~  253 (664)
                      |...|++++|+.++++.
T Consensus       392 ~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          392 YMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHH
Confidence            44555555544444443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.43  E-value=0.031  Score=45.23  Aligned_cols=93  Identities=8%  Similarity=0.057  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC---CHHHHHHHHHHhhhcCCCCCC--CHhHHHHHHHHHHHcCChhHH
Q 006010          489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG---SVEEALKLFNEMLCLEPKSQP--DVFTYNILLNALCKQSNISHS  563 (664)
Q Consensus       489 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A  563 (664)
                      ..+.+-|.+....+ .++..+...+..++++.+   ++++++.++++.+..+   .|  +...+..+.-+|.+.|++++|
T Consensus        15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~---~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CccchHHHHHHHHHHHHHccCHHHH
Confidence            34444555554444 255666666666666666   4556666666665322   12  233444555566677777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          564 IDLLNSMMDRGCDPDLVTCNIFLT  587 (664)
Q Consensus       564 ~~~~~~~~~~~~~p~~~~~~~ll~  587 (664)
                      .+.++++++  +.|+..--..+..
T Consensus        91 ~~y~~~lL~--ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           91 LKYVRGLLQ--TEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHHHHHHh--cCCCCHHHHHHHH
Confidence            777777766  5665544433333

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.41  E-value=0.073  Score=58.27  Aligned_cols=152  Identities=14%  Similarity=0.159  Sum_probs=90.4

Q ss_pred             HHhcCCHHHHHH-HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcC
Q 006010          128 YGKAHLVEEAIR-LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLG  206 (664)
Q Consensus       128 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  206 (664)
                      ....+++++|.+ ++..+       ++......++..+.+.|..++|+++.+....               -.......|
T Consensus       609 ~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~---------------~f~~~l~~~  666 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ---------------KFELALKVG  666 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH---------------HHHHHHHHT
T ss_pred             HHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcch---------------heehhhhcC
Confidence            345677887766 44221       1122336677777778888877765532111               123345678


Q ss_pred             ChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010          207 LVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVD  286 (664)
Q Consensus       207 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  286 (664)
                      +++.|.++.+.+.      +...|..+...+.+.|+++.|.+.|.++..         |..+...|...|+.+...++.+
T Consensus       667 ~~~~A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~  731 (814)
T 3mkq_A          667 QLTLARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK  731 (814)
T ss_dssp             CHHHHHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence            8888888876553      567788888888888888888888887653         3445555555666666555555


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006010          287 NMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDR  322 (664)
Q Consensus       287 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  322 (664)
                      .....|.      ++....++.+.|++++|.+++.+
T Consensus       732 ~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          732 DAETTGK------FNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence            4444331      22233334445666665555444

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.32  E-value=7.3e-07  Score=85.27  Aligned_cols=265  Identities=12%  Similarity=0.081  Sum_probs=164.8

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL  161 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  161 (664)
                      .+++|..+..+....++..+|+..|   .+.+   ++..|..++.+..+.|.+++-++.+... ++.  ..++..=+.++
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA~---Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~--~ke~~IDteLi  123 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKAD---DPSSYMEVVQAANTSGNWEELVKYLQMA-RKK--ARESYVETELI  123 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSS---CCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTT-STT--CCSTTTTHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHH---HhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHH--hcccccHHHHH
Confidence            5678888888888888777765433   2222   3336777888888888888888887654 332  23333446788


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC
Q 006010          162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN  241 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  241 (664)
                      -+|++.++..+-.+++          ..||..-...+..-|...|.++.|.-+|..+...         .-|...+.+.|
T Consensus       124 ~ayAk~~rL~elEefl----------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~  184 (624)
T 3lvg_A          124 FALAKTNRLAELEEFI----------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLG  184 (624)
T ss_dssp             HHHHTSCSSSTTTSTT----------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCS
T ss_pred             HHHHhhCcHHHHHHHH----------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHH
Confidence            8888888766544332          1256666667778888888888888887776543         23444566777


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006010          242 RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLD  321 (664)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  321 (664)
                      ++..|.+.-+   +.   .++.||..+-.+|...+++.-|.-.--.++-.   ||  -...++..|-..|.+++-+.+++
T Consensus       185 ~yq~AVdaAr---KA---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlE  253 (624)
T 3lvg_A          185 EYQAAVDGAR---KA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLE  253 (624)
T ss_dssp             GGGSSTTTTT---TC---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHH
T ss_pred             HHHHHHHHHH---hc---CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHH
Confidence            7777765432   22   36678888888999999888776665554422   11  22345666778888888888888


Q ss_pred             HHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC------CHHHHHHHHHHHHhcCChHHHH
Q 006010          322 RMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER-KFHV------NEYIYSTLISGLFKEGKAEDAM  387 (664)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~  387 (664)
                      ...... ....-.|+-|.-.|++- +.++..+.++..-.+ +++-      ....|..++..|..-.+++.|.
T Consensus       254 aglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          254 AALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            876432 34566777777777764 344444443332221 1111      1234555555555555555443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.16  E-value=0.053  Score=41.14  Aligned_cols=63  Identities=10%  Similarity=0.049  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFH-----CKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      ....++..+.+.|+++.|+.+|+..++...     .......+..+..++.+.|++++|...++++++
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            344555555556666666666555544221     122345566666666666666666666666655

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.11  E-value=0.049  Score=44.03  Aligned_cols=80  Identities=9%  Similarity=0.035  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006010          102 LEMVLYRMRREKRVVLEKSFIFIFKAYGKAH---LVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYN  178 (664)
Q Consensus       102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  178 (664)
                      +++.|......+. ++..+...+..++.+.+   +.++++.+|+.+.+..........+..+..++.+.|++++|++.++
T Consensus        17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3444444444332 35555555565666655   4446666666655431000123445555555666666666666666


Q ss_pred             HHHh
Q 006010          179 HIVN  182 (664)
Q Consensus       179 ~~~~  182 (664)
                      .+++
T Consensus        96 ~lL~   99 (152)
T 1pc2_A           96 GLLQ   99 (152)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.09  E-value=0.045  Score=41.56  Aligned_cols=67  Identities=12%  Similarity=0.108  Sum_probs=58.0

Q ss_pred             CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCC------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010           81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREK------RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE  147 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  147 (664)
                      .++..+..+...+...|++..|...|+.+.+..      ......++..+..++.+.|+++.|+..++..++.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            577889999999999999999999999988641      2345678899999999999999999999999764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.00  E-value=0.14  Score=56.00  Aligned_cols=156  Identities=16%  Similarity=0.151  Sum_probs=98.2

Q ss_pred             HHHHHhCCCcchHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010           90 IQHYANSGDFKSLEM-VLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG  168 (664)
Q Consensus        90 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (664)
                      .......++++.|.. ++..+.      +......++..+.+.|..++|+++.+.        +.     .-.....+.|
T Consensus       606 ~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~--------~~-----~~f~~~l~~~  666 (814)
T 3mkq_A          606 FQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD--------QD-----QKFELALKVG  666 (814)
T ss_dssp             HHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC--------HH-----HHHHHHHHHT
T ss_pred             HhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC--------cc-----hheehhhhcC
Confidence            445567888888866 441111      023346777777888888888875421        11     1133456778


Q ss_pred             CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010          169 LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVL  248 (664)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  248 (664)
                      ++++|.++.+.+         .+...|..+...+.+.|+++.|.+.|..+..         |..+...+...|+.+...+
T Consensus       667 ~~~~A~~~~~~~---------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~  728 (814)
T 3mkq_A          667 QLTLARDLLTDE---------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT  728 (814)
T ss_dssp             CHHHHHHHHTTC---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHhh---------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence            899888886544         2567888889999999999999999987652         3344455555666666666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          249 LLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      +-+.....|      -++....+|.+.|++++|++++.++
T Consensus       729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            555555443      1233344455566666666666554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.74  E-value=0.07  Score=42.45  Aligned_cols=100  Identities=10%  Similarity=0.026  Sum_probs=64.7

Q ss_pred             CChhHHHHHHHHHHhCCCc------chHHHHHHHHHhCCCCcCHHHHHHHHH------HHHhcCCHHHHHHHHHHhhhcC
Q 006010           81 LGDSTFYSLIQHYANSGDF------KSLEMVLYRMRREKRVVLEKSFIFIFK------AYGKAHLVEEAIRLFHTMVDEF  148 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~  148 (664)
                      .|+++|...+..+-+.|++      +..+.+|+++...-++.....|...+.      .+...++.++|.++|+.++.. 
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~-   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN-   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence            4788999999988888998      888888988887543321111111111      112346777777777776543 


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          149 HCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       149 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                       ++.=...|....+.-+++|+...|.+++...+.
T Consensus        90 -hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG  122 (161)
T 4h7y_A           90 -CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE  122 (161)
T ss_dssp             -CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence             222266677777777777777777777777766

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.54  E-value=0.16  Score=40.49  Aligned_cols=103  Identities=10%  Similarity=0.124  Sum_probs=57.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCH------hHHHHHHHHHHhcccCCCCcCHH-HHHHHHHHH------HhcCChhHHHHHHh
Q 006010          150 CKRTVKSFNSVLNVIIQEGLY------HRALEFYNHIVNAKHMNILPNTL-TFNLVIKTV------CRLGLVDNAIQLFR  216 (664)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~------~~~g~~~~A~~~~~  216 (664)
                      .+.|.++|-..+..+-+.|+.      ++.+++|+++..    .++|+.. .|...+..+      ...++.++|+++|+
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia----~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~   84 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE----ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQ   84 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH----HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH----cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            356778888888888777888      788888888776    3445421 111111111      22355666666666


Q ss_pred             hcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006010          217 EMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDG  257 (664)
Q Consensus       217 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  257 (664)
                      .+.+.+ +.=...|......-.++|++..|.+++......+
T Consensus        85 ~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           85 MARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            554432 1114445555555555566666666665555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.37  E-value=0.99  Score=37.49  Aligned_cols=100  Identities=17%  Similarity=0.223  Sum_probs=46.8

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 006010          413 CRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREAR  492 (664)
Q Consensus       413 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  492 (664)
                      ...|+++.|.++.+.+      .+...|..|.+.....|+++-|.+.|.....         +..+.-.|...|+.++-.
T Consensus        16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            3445555555554443      1345555555555555555555555554432         222333344445544444


Q ss_pred             HHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010          493 MVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEM  533 (664)
Q Consensus       493 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (664)
                      ++-+.....|      -++.....+.-.|+++++.++|.+.
T Consensus        81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence            4433333322      1223333344456666666666544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.25  E-value=0.26  Score=40.20  Aligned_cols=62  Identities=5%  Similarity=0.081  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhC---CCCc-CH----HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRRE---KRVV-LE----KSFIFIFKAYGKAHLVEEAIRLFHTMVD  146 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~  146 (664)
                      ++..-++.+...|.++.|+.+.+-+...   +... ++    .++..++.++...|.+..|...|++.++
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            4444556666666666666665554432   1110 11    1344555556666666666666666543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.10  E-value=0.89  Score=35.39  Aligned_cols=140  Identities=11%  Similarity=0.044  Sum_probs=80.7

Q ss_pred             HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006010          129 GKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLV  208 (664)
Q Consensus       129 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  208 (664)
                      .-.|..++..++..+...    +.+..-+|.++--....-+-+-..++++.+-+.    +  |.          ...|+.
T Consensus        18 ildG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----F--Di----------s~C~Nl   77 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY----F--DL----------DKCQNL   77 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----S--CG----------GGCSCT
T ss_pred             HHhhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhh----c--Cc----------HhhhcH
Confidence            345777777777777653    234455565665555555555555555555320    1  11          123444


Q ss_pred             hHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          209 DNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       209 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      ......+-.+-.     +.......+..+...|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+.
T Consensus        78 KrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A  151 (172)
T 1wy6_A           78 KSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA  151 (172)
T ss_dssp             HHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            444444433322     234455566666777777777777777533 23566666777777777777777777777777


Q ss_pred             HHcCCC
Q 006010          289 FLKGCL  294 (664)
Q Consensus       289 ~~~g~~  294 (664)
                      -+.|++
T Consensus       152 C~kG~k  157 (172)
T 1wy6_A          152 CKKGEK  157 (172)
T ss_dssp             HHTTCH
T ss_pred             HHhhhH
Confidence            777654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.09  E-value=3.3e-06  Score=80.90  Aligned_cols=235  Identities=11%  Similarity=0.161  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010          367 EYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKG  446 (664)
Q Consensus       367 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  446 (664)
                      ...|..+..+..+.+++.+|++.|-+.      .|+..|..++.+..+.|.+++-..++....+..  .++..=+.|+-+
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a  125 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA  125 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence            346777777777777777776654221      255667777788888888888887777666552  334444677778


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHH
Q 006010          447 FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEA  526 (664)
Q Consensus       447 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  526 (664)
                      |++.++..+-.+++.       .||..-...+..-|...|.++.|.-+|..+-         -|..|...+.+.|+++.|
T Consensus       126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A  189 (624)
T 3lvg_A          126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA  189 (624)
T ss_dssp             HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred             HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence            888777665444321       3566566667777777777777766654432         233344445566777666


Q ss_pred             HHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHH
Q 006010          527 LKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNEL  606 (664)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l  606 (664)
                      .+.-+++     +   +..+|..+-.+|...+.+.-|.-.--.++   +.||.                       +++|
T Consensus       190 VdaArKA-----n---s~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade-----------------------L~el  235 (624)
T 3lvg_A          190 VDGARKA-----N---STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE-----------------------LEEL  235 (624)
T ss_dssp             TTTTTTC-----C---SSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC-----------------------CSGG
T ss_pred             HHHHHhc-----C---ChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH-----------------------HHHH
Confidence            6554433     2   55677777777777777665554444443   22221                       1111


Q ss_pred             HHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcc--cchHHHHHHHHHh
Q 006010          607 AIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCR--PKRIQAAINKCWS  660 (664)
Q Consensus       607 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~  660 (664)
                      ...|-..|.+++-+.+++..... -+....++..|+-.|++  ..++-|=++.||+
T Consensus       236 v~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~PeKlmEHlklf~s  290 (624)
T 3lvg_A          236 INYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKPQKMREHLELFWS  290 (624)
T ss_dssp             GSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSS
T ss_pred             HHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            11166677777766666666532 13345666666666643  3455555555554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.76  E-value=1.1  Score=34.86  Aligned_cols=147  Identities=14%  Similarity=0.147  Sum_probs=98.9

Q ss_pred             HHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006010          406 SALIDG--LCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLC  483 (664)
Q Consensus       406 ~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  483 (664)
                      ..|+.+  +.-.|..++..++..+..+.   .+..-++-++.-....-+-+-..++++.+-+.   .|.          .
T Consensus         9 kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s   72 (172)
T 1wy6_A            9 RKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------D   72 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------G
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------H
Confidence            334443  34568888888888887764   35566666666555555666666666655442   221          2


Q ss_pred             cCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHH
Q 006010          484 EDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHS  563 (664)
Q Consensus       484 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  563 (664)
                      ..|+.......+-.+     ..+.......+..+...|.-++-.+++..++  . +.+|++...-.+..+|.+.|+..+|
T Consensus        73 ~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l--~-n~~~~~~~l~kia~Ay~Klg~~r~a  144 (172)
T 1wy6_A           73 KCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREIL--K-NNEVSASILVAIANALRRVGDERDA  144 (172)
T ss_dssp             GCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHh--c-cCCCChHHHHHHHHHHHHhcchhhH
Confidence            345555555444332     2244455666778888999999999998863  2 4667888888899999999999999


Q ss_pred             HHHHHHHHHCCCC
Q 006010          564 IDLLNSMMDRGCD  576 (664)
Q Consensus       564 ~~~~~~~~~~~~~  576 (664)
                      .++++++-+.|++
T Consensus       145 ~eLl~~AC~kG~k  157 (172)
T 1wy6_A          145 TTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhhhH
Confidence            9999999988864

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.69  E-value=0.26  Score=38.26  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=10.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhh
Q 006010          513 MIHGLCNAGSVEEALKLFNEMLC  535 (664)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~  535 (664)
                      +.-++.+.|++++|.++++.+++
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            33344444444444444444443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.64  E-value=3.8  Score=40.50  Aligned_cols=97  Identities=15%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhC--CCCcC---HHhHHHHHHHHHHcCCHHHHHHHHHHhhhc--CCCCCCC--HhH
Q 006010          476 SVLIHGLCEDGKLREARMVWTQMLSR--GCKPD---VVAYSSMIHGLCNAGSVEEALKLFNEMLCL--EPKSQPD--VFT  546 (664)
Q Consensus       476 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~--~~~  546 (664)
                      ..|...+...|++.+|..++..+...  |..+.   ...+...++.|...+++.+|..++.++...  .....|+  ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            45666777778888888777776532  21111   235556677777888888888887776211  1111121  224


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          547 YNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       547 ~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      +...+..+...+++.+|...|.++.+
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            55566667778888888877777764

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.08  E-value=0.17  Score=39.28  Aligned_cols=67  Identities=7%  Similarity=0.046  Sum_probs=41.0

Q ss_pred             CChhHHHHHHHHHHhCCCcch---HHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010           81 LGDSTFYSLIQHYANSGDFKS---LEMVLYRMRREKRV-VLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE  147 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  147 (664)
                      ++..+-+.+..++.++++...   ++.+++.+.+.+.+ ........++.++.+.|++++|++.++.+++.
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            566666666666666665555   56666666655411 34445556666666777777777777666654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.95  E-value=8.3  Score=41.64  Aligned_cols=269  Identities=13%  Similarity=0.119  Sum_probs=146.4

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 006010          306 GLCLKGNLDKAVSLLDRMVASKCMPNE--VTYGTIINGLVKLGRAVDGARVLMSMEERKF-------HVNEYIYSTLISG  376 (664)
Q Consensus       306 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~  376 (664)
                      +....|+.++++.+++.....+-..+.  ..-..+.-+....|...++...+.......-       .+....-..+.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            455678888888777766542101122  2223344455566666677777766554321       0111112223333


Q ss_pred             HHhcCC-hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcC
Q 006010          377 LFKEGK-AEDAMKLWKQMMEKGCKPNT--VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSL--MKGFFESG  451 (664)
Q Consensus       377 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~  451 (664)
                      +.-.|. -+++.+.+..+....- +..  ..--++...++..|+.+....++..+.+..   +..+...+  .-++...|
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g  538 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG  538 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence            333332 2456666666655321 111  111233344556788887788887777642   33333333  33445778


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHH
Q 006010          452 KGHKAVEIWKDMAKNNCVYNEV-CYS---VLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEAL  527 (664)
Q Consensus       452 ~~~~a~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  527 (664)
                      +.+.+..+.+.+....   +.. -|.   .+.-+|+..|+.....+++..+... ...+......+.-++...|+.+.+.
T Consensus       539 ~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~  614 (963)
T 4ady_A          539 RQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVP  614 (963)
T ss_dssp             CGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred             ChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHH
Confidence            8888888888887632   222 232   3455677888988888899888864 2233333334444555667776677


Q ss_pred             HHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          528 KLFNEMLCLEPKSQPDVFTYNILLNALCKQSNI-SHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      ++++.+.  +. ..|....-..+.-+....|+. .+|++.+..+..   .+|..+-...+.+
T Consensus       615 rlv~~L~--~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~A  670 (963)
T 4ady_A          615 RIVQLLS--KS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIA  670 (963)
T ss_dssp             HHTTTGG--GC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred             HHHHHHH--hc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHH
Confidence            7776552  22 233333333333444445554 578889999873   5666654444444

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.82  E-value=5.2  Score=39.53  Aligned_cols=97  Identities=19%  Similarity=0.154  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCH--
Q 006010          229 TYCTLMDGLCKENRLDEAVLLLDEMQVD--GCFPT---PVTFNVLINGLCKNGELGRAAKLVDNMFL----KGCLPNE--  297 (664)
Q Consensus       229 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~g~~p~~--  297 (664)
                      ....|...+...|++.+|.+++..+...  |....   ...+...++.|...+++.+|..++.++..    ....|+.  
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~  218 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL  218 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence            3455777788888888888888877542  21111   23555667778888888888887777532    2222221  


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010          298 VTYNTLIHGLCLKGNLDKAVSLLDRMVA  325 (664)
Q Consensus       298 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  325 (664)
                      ..+...+..+...+++.+|-..|.++..
T Consensus       219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          219 EYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            2445556666677777777776666543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.77  E-value=2.6  Score=47.67  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=32.2

Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006010           88 SLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTM  144 (664)
Q Consensus        88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  144 (664)
                      .++..+...+.++.+..+...+..     +...-..++.++...|++++|.+.|.+.
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~ka  868 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTT  868 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            355566666777666554433221     2333456677777888888888888765

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.65  E-value=1.3  Score=42.67  Aligned_cols=98  Identities=4%  Similarity=-0.090  Sum_probs=55.3

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010          549 ILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ  628 (664)
Q Consensus       549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  628 (664)
                      .++..|...|++.+|.+++.++.+.-...|..++..=+..                .-...|...|++.++..++..+..
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~l----------------le~~~~~~~~n~~k~k~~l~~a~~  167 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQL----------------LESKTYHALSNLPKARAALTSART  167 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHH----------------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHH----------------HHHHHHHHhccHHHHHHHHHHHHh
Confidence            4667777788888888777777753222222222111111                112337777788888877777654


Q ss_pred             c--CCCCChHHH----HHHHHHhc-ccchHHHHHHHHHhhh
Q 006010          629 K--FLSPQTSTW----ERVVQELC-RPKRIQAAINKCWSNL  662 (664)
Q Consensus       629 ~--~~~~~~~~~----~~l~~~~~-~~g~~~~A~~~~~~~l  662 (664)
                      .  .+.++|.+.    ..-+..+. ..|++++|.+.|-+.+
T Consensus       168 ~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          168 TANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             hhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            4  233444332    23344555 6788888877776543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=92.32  E-value=1.1  Score=35.41  Aligned_cols=68  Identities=12%  Similarity=0.044  Sum_probs=57.6

Q ss_pred             CCChhHHHHHHHHHHhCCCcc---hHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010           80 QLGDSTFYSLIQHYANSGDFK---SLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE  147 (664)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  147 (664)
                      .+++.+-+....++.++.+..   .+..+++.+.+.++.........++.++.+.|++++|++..+.+++.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            578999999999999987654   67788888888766556778888999999999999999999999874

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=92.28  E-value=7  Score=36.11  Aligned_cols=26  Identities=15%  Similarity=0.101  Sum_probs=18.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010          261 TPVTFNVLINGLCKNGELGRAAKLVD  286 (664)
Q Consensus       261 ~~~~~~~li~~~~~~g~~~~a~~~~~  286 (664)
                      ++.....+...|.+.|++.+|+..|-
T Consensus       133 dp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          133 DPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            56667777777778888777776654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=92.24  E-value=7.3  Score=36.25  Aligned_cols=81  Identities=5%  Similarity=-0.006  Sum_probs=47.0

Q ss_pred             CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHH
Q 006010          543 DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKI  622 (664)
Q Consensus       543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  622 (664)
                      |+.....+...|.+.+++.+|...|-  .  |..+....+..++-.+..... +.+...|+..-+..|.-.++...|..+
T Consensus       135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaRaVL~yL~l~n~~~A~~~  209 (336)
T 3lpz_A          135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDE-SHTAPLYCARAVLPYLLVANVRAANTA  209 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            55556666666777777766666552  1  233333455444444433322 334444555555567788888888887


Q ss_pred             HHHHHH
Q 006010          623 VEVMLQ  628 (664)
Q Consensus       623 ~~~~~~  628 (664)
                      ++...+
T Consensus       210 ~~~f~~  215 (336)
T 3lpz_A          210 YRIFTS  215 (336)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=92.18  E-value=7.2  Score=36.03  Aligned_cols=66  Identities=11%  Similarity=0.200  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 006010          404 VYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI----WKDMAKNNCVYNEVCYSVLI  479 (664)
Q Consensus       404 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~  479 (664)
                      .|..+..-|.+.+++++|.+++..-..               .+.+.|+...|.++    .+-..+.+.+++......++
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~   99 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV   99 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            344555556666777777766544321               23344554444332    33334445566666666665


Q ss_pred             HHHHc
Q 006010          480 HGLCE  484 (664)
Q Consensus       480 ~~~~~  484 (664)
                      ..+..
T Consensus       100 ~l~~~  104 (312)
T 2wpv_A          100 RLIAE  104 (312)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            55544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.17  E-value=0.86  Score=35.50  Aligned_cols=68  Identities=12%  Similarity=0.054  Sum_probs=56.2

Q ss_pred             CCChhHHHHHHHHHHhCCCc---chHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010           80 QLGDSTFYSLIQHYANSGDF---KSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE  147 (664)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  147 (664)
                      .+++.+-.....++.++.+.   ..++.+++.+.+.++......+..++.++.+.|++++|++..+.+++.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            57888888899999988765   467888888887775556778888999999999999999999998874

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.74  E-value=1.2  Score=46.91  Aligned_cols=126  Identities=12%  Similarity=0.033  Sum_probs=66.7

Q ss_pred             HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHC------CCCC-CH----
Q 006010          406 SALIDGLCRVGK-PDEAEEILFEMINNGCAANAFTYSSLMKGFFESG-KGHKAVEIWKDMAKN------NCVY-NE----  472 (664)
Q Consensus       406 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~----  472 (664)
                      ..++..+...++ .+.|..+++++.......+......++..+...+ +--+|.+++.+..+.      ..++ +.    
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            344454444555 4778888888877631112222223333333332 223455555554321      1111 11    


Q ss_pred             ------HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010          473 ------VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEM  533 (664)
Q Consensus       473 ------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (664)
                            .....=...+...|+++-|+++-++.+..  .|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                  01111233445667777777777777764  444 567777777777777777777777766

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.66  E-value=0.67  Score=37.80  Aligned_cols=118  Identities=12%  Similarity=0.057  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhccc----
Q 006010          117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-------VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKH----  185 (664)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----  185 (664)
                      ...++..-++.+...|.++.|+-+...++...+.+++       ..+...++.++...|+|.+|...|+++++...    
T Consensus        19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            3446677777788889999998888776554333444       23667788899999999999999998633210    


Q ss_pred             -C----------------CCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 006010          186 -M----------------NILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDG  236 (664)
Q Consensus       186 -~----------------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  236 (664)
                       .                ....+...--.+..+|.+.|++++|+.+++.+...  ..+...-..|.+.
T Consensus        99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kvnm~LakL  164 (167)
T 3ffl_A           99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKINMLLANL  164 (167)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHHHHHHHHH
T ss_pred             CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHHHHHHHHH
Confidence             0                12233444445788899999999999999998765  3355554445444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.47  E-value=4.2  Score=39.38  Aligned_cols=71  Identities=14%  Similarity=0.044  Sum_probs=41.6

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH
Q 006010          549 ILLNALCKQSNISHSIDLLNSMMDRGCDP-DLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML  627 (664)
Q Consensus       549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  627 (664)
                      .++..+...|++++|+..+..+..  ..| +...+..++.+                     |...|+..+|.+.|++..
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~a---------------------l~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITA---------------------YYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH---------------------HHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH---------------------HHHcCCHHHHHHHHHHHH
Confidence            444555666677777766666665  233 34455555555                     666777777766666654


Q ss_pred             Hc-----CCCCChHHHHHHH
Q 006010          628 QK-----FLSPQTSTWERVV  642 (664)
Q Consensus       628 ~~-----~~~~~~~~~~~l~  642 (664)
                      +.     |+.|++.+-...-
T Consensus       233 ~~L~~eLG~~P~~~l~~l~~  252 (388)
T 2ff4_A          233 TTLADDLGIDPGPTLRALNE  252 (388)
T ss_dssp             HHHHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHH
Confidence            32     6666665544333

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.29  E-value=8.9  Score=43.39  Aligned_cols=144  Identities=10%  Similarity=0.086  Sum_probs=73.3

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCC--------------
Q 006010          159 SVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCE--------------  224 (664)
Q Consensus       159 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--------------  224 (664)
                      .++..+...+.++-|.++......        +...--.+..++...|++++|.+.|++.... +.              
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~~--------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~  887 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLNS--------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQE  887 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccC--------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhccccc
Confidence            355556666666666554433321        3333334555666677777777777654211 10              


Q ss_pred             ---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          225 ---------PDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTP----VTFNVLINGLCKNGELGRAAKLVDNMFLK  291 (664)
Q Consensus       225 ---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~  291 (664)
                               .-..-|..++..+.+.+.++.+.++-....+.....+.    ..|..+.+.+...|++++|...+-.+...
T Consensus       888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~  967 (1139)
T 4fhn_B          888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT  967 (1139)
T ss_dssp             HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred             ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence                     01223555566666666666666555544432111111    14555666666666666666666555444


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCh
Q 006010          292 GCLPNEVTYNTLIHGLCLKGNL  313 (664)
Q Consensus       292 g~~p~~~~~~~l~~~~~~~g~~  313 (664)
                      ..  -......++...|..|..
T Consensus       968 ~~--r~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          968 PL--KKSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             SS--CHHHHHHHHHHHHHHCCH
T ss_pred             HH--HHHHHHHHHHHHHhCCCh
Confidence            22  233445555555554443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.70  E-value=1.4  Score=46.36  Aligned_cols=128  Identities=14%  Similarity=0.099  Sum_probs=76.7

Q ss_pred             HHHHHHHHhCCC-cchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhc------CCCCCCH----
Q 006010           87 YSLIQHYANSGD-FKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAH-LVEEAIRLFHTMVDE------FHCKRTV----  154 (664)
Q Consensus        87 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~------~~~~~~~----  154 (664)
                      ..++..+...|+ .+.|..+++.+....+.........++......+ +--+|+++..+.++.      .-.+.+.    
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            345555555666 4678888888887664433322233333333322 233455555544321      0011111    


Q ss_pred             ------HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010          155 ------KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKTVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       155 ------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~  219 (664)
                            .....-+..+...|+++-|+++.++...     ..|+ -.+|..|..+|...|+++.|+-.++.+.
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~-----~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE-----LALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh-----cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                  1223334566678888888888888877     3454 4588888888888888888888888875

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.40  E-value=1.1  Score=43.39  Aligned_cols=72  Identities=13%  Similarity=0.131  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD-----RGCDPDLVTCN  583 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~  583 (664)
                      +...++..+...|++++|...+..++..+|-   +...|..++.++.+.|+..+|++.|++..+     .|+.|...+-.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            3445666777888888888888887655544   677888888888888888888888887663     48888776543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=90.21  E-value=3.6  Score=32.04  Aligned_cols=81  Identities=7%  Similarity=0.066  Sum_probs=49.0

Q ss_pred             CcCHHhHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010          504 KPDVVAYSSMIHGLCNAGS---VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       504 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  580 (664)
                      .|+..+--.+..++.+..+   ..+++.++++..+..+  .-....+..+.-++.+.|++++|.+..+.+++  +.|+..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~--~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~  112 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK  112 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence            4566666666666666654   3457777777753221  11233455566677777888888888877776  677665


Q ss_pred             HHHHHHHh
Q 006010          581 TCNIFLTA  588 (664)
Q Consensus       581 ~~~~ll~~  588 (664)
                      -...+-..
T Consensus       113 QA~~Lk~~  120 (134)
T 3o48_A          113 QVGALKSM  120 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.40  E-value=8.1  Score=30.57  Aligned_cols=81  Identities=7%  Similarity=0.066  Sum_probs=50.5

Q ss_pred             CcCHHhHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010          504 KPDVVAYSSMIHGLCNAGS---VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       504 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  580 (664)
                      .|+..+--.+..++.+..+   ..+++.+++......+.  -.......+.-++.+.|++++|.+..+.+++  +.|+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~  111 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK  111 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence            4566666666777776665   44677777777542221  1233344555677788888888888888887  677665


Q ss_pred             HHHHHHHh
Q 006010          581 TCNIFLTA  588 (664)
Q Consensus       581 ~~~~ll~~  588 (664)
                      -...+-..
T Consensus       112 QA~~Lk~~  119 (144)
T 1y8m_A          112 QVGALKSM  119 (144)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444333

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=86.23  E-value=7.9  Score=28.17  Aligned_cols=78  Identities=6%  Similarity=0.003  Sum_probs=48.9

Q ss_pred             CCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006010           96 SGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALE  175 (664)
Q Consensus        96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  175 (664)
                      +...++|..+-+.+...+.  .+.+-...+..+...|+|++|..+.+..     +.||...|.++..  .+.|..+++..
T Consensus        20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~   90 (116)
T 2p58_C           20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALES   90 (116)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHH
Confidence            3456777777777766553  2223333344566778888888776655     5677777765544  56677777777


Q ss_pred             HHHHHHh
Q 006010          176 FYNHIVN  182 (664)
Q Consensus       176 ~~~~~~~  182 (664)
                      .+..+..
T Consensus        91 rL~~la~   97 (116)
T 2p58_C           91 RLNRLAR   97 (116)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            7655544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=85.41  E-value=27  Score=33.56  Aligned_cols=27  Identities=22%  Similarity=-0.012  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010          368 YIYSTLISGLFKEGKAEDAMKLWKQMM  394 (664)
Q Consensus       368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~  394 (664)
                      .....+...|.+.|+.++..+++....
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~   46 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTR   46 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445566667777777777766666554

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.75  E-value=7.7  Score=28.18  Aligned_cols=78  Identities=9%  Similarity=-0.015  Sum_probs=49.7

Q ss_pred             CCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006010           96 SGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALE  175 (664)
Q Consensus        96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  175 (664)
                      +...++|..+-+.+...+.  .+.+-...+..+...|+|++|..+.+..     +.||...|.++..  .+.|..+++..
T Consensus        19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~   89 (115)
T 2uwj_G           19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDR   89 (115)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHH
Confidence            3456777777777776553  2223333344566788888888776554     5677777765544  66777777777


Q ss_pred             HHHHHHh
Q 006010          176 FYNHIVN  182 (664)
Q Consensus       176 ~~~~~~~  182 (664)
                      .+..+..
T Consensus        90 rL~~la~   96 (115)
T 2uwj_G           90 RLAGLGG   96 (115)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            7766654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=83.77  E-value=53  Score=35.61  Aligned_cols=26  Identities=15%  Similarity=0.149  Sum_probs=21.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010          265 FNVLINGLCKNGELGRAAKLVDNMFL  290 (664)
Q Consensus       265 ~~~li~~~~~~g~~~~a~~~~~~~~~  290 (664)
                      |..++....+.++.+.+.++|..+..
T Consensus       233 y~~a~~~ai~LnD~~li~~if~~l~~  258 (963)
T 4ady_A          233 YLTLNKVVVNLNDAGLALQLFKKLKE  258 (963)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            56677788888999999999999864

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=83.76  E-value=3.1  Score=37.10  Aligned_cols=52  Identities=23%  Similarity=0.307  Sum_probs=25.6

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 006010          448 FESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLS  500 (664)
Q Consensus       448 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  500 (664)
                      .+.|+++++++....-++.. |-|...-..++..+|-.|++++|.+-++...+
T Consensus         8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~   59 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK   59 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34455555555554444443 34444444455555555555555555444443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=83.35  E-value=29  Score=32.28  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=17.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH
Q 006010          261 TPVTFNVLINGLCKNGELGRAAKLV  285 (664)
Q Consensus       261 ~~~~~~~li~~~~~~g~~~~a~~~~  285 (664)
                      |+.....+...|.+.+++.+|..-|
T Consensus       135 dp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          135 DPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHH
Confidence            5556666777777777777776665

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.80  E-value=5.6  Score=39.14  Aligned_cols=60  Identities=8%  Similarity=-0.046  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC--HHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010          474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD--VVAYSSMIHGLCNAGSVEEALKLFNEM  533 (664)
Q Consensus       474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (664)
                      +...+...|.+.|++++|.+.+.++......+.  ...+...+..+...+++..+...++++
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka  194 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV  194 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            344455555555666666666555554321111  234444555555555555555555554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.30  E-value=8  Score=38.02  Aligned_cols=125  Identities=9%  Similarity=-0.017  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHhCCC-Cc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHH
Q 006010          488 LREARMVWTQMLSRGC-KP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSID  565 (664)
Q Consensus       488 ~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  565 (664)
                      .++-.+......+... .. -..+...++..|.+.|++++|.+.|.++.....+...-...+-..++.+...+++..+..
T Consensus       110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~  189 (429)
T 4b4t_R          110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE  189 (429)
T ss_dssp             HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            4444444444444321 12 124677888999999999999999999854333444445667778888888999999999


Q ss_pred             HHHHHHHC-CCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          566 LLNSMMDR-GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       566 ~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                      .++++... .-.++.... .-+..|                -|..+...++|.+|...|-.+...
T Consensus       190 ~~~ka~~~~~~~~d~~~~-~~lk~~----------------~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          190 KLEAVNSMIEKGGDWERR-NRYKTY----------------YGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHHHTTCCCTHHH-HHHHHH----------------HHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcCCCHHHH-HHHHHH----------------HHHHHHHhChHHHHHHHHHHHhcc
Confidence            99888742 112232222 222222                233477888999988888887664

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=81.63  E-value=13  Score=27.18  Aligned_cols=47  Identities=11%  Similarity=0.147  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          245 EAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK  291 (664)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  291 (664)
                      +..+-++.+....+.|++.+..+.+++|.+.+++.-|.++|+-.+.+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44455555555555666666666666666666666666666655443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=81.27  E-value=14  Score=27.11  Aligned_cols=46  Identities=17%  Similarity=0.223  Sum_probs=23.4

Q ss_pred             HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          525 EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       525 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      +..+-++.+  ......|++....+.+++|.+.+++.-|+++++....
T Consensus        28 e~rrglN~l--~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           28 ELRKGMNTL--VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHH--TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            344444444  3334455555555555555555555555555555543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=81.21  E-value=53  Score=33.86  Aligned_cols=399  Identities=10%  Similarity=0.026  Sum_probs=184.8

Q ss_pred             HhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006010          203 CRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAA  282 (664)
Q Consensus       203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  282 (664)
                      .+.|++..+..+...+...-+.| -..|..+...+ .....++....+++-..  .+.....-+..+..+.+.+++...+
T Consensus        17 ~~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~~~l   92 (618)
T 1qsa_A           17 WDNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWRGLL   92 (618)
T ss_dssp             HHTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHHHHH
Confidence            35688888877777664332111 11233222211 12234444444433221  1112233345566677788887777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010          283 KLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERK  362 (664)
Q Consensus       283 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  362 (664)
                      ..+..     .+.+...-.....+....|+..+|....+.+...| ...+..+..++..+.+.|......          
T Consensus        93 ~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~----------  156 (618)
T 1qsa_A           93 AFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLA----------  156 (618)
T ss_dssp             HHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHH----------
T ss_pred             HhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHH----------
Confidence            64442     23355555556667777888888888888877765 345566777777777666543321          


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---
Q 006010          363 FHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVV-YSALIDGLCRVGKPDEAEEILFEMINNGCAANAF---  438 (664)
Q Consensus       363 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---  438 (664)
                            .+.- +......|+...|..+...+     .++... ...++....   ++..+......   .  .++..   
T Consensus       157 ------~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~---~p~~~~~~~~~---~--~~~~~~~~  216 (618)
T 1qsa_A          157 ------YLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFART---T--GATDFTRQ  216 (618)
T ss_dssp             ------HHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHHHH---S--CCCHHHHH
T ss_pred             ------HHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHh---ChHhHHHHHhc---c--CCChhhHH
Confidence                  1111 12223344444444433322     112111 111111111   12222221111   0  11111   


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHH
Q 006010          439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCY----SVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMI  514 (664)
Q Consensus       439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~  514 (664)
                      .+...+.-+.+ .+.+.|...+....+.. ..+....    ..++..+...+...++...+......  .++.......+
T Consensus       217 ~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~  292 (618)
T 1qsa_A          217 MAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRV  292 (618)
T ss_dssp             HHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHH
T ss_pred             HHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHH
Confidence            11111222222 25566666666654432 1222222    22222233334244455555554432  22332233333


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhcc
Q 006010          515 HGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLE  594 (664)
Q Consensus       515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~  594 (664)
                      ....+.|+++.|...|+.+  .... .....-...+.+++...|+.++|..+|+++..   ..   +|..++.+-.-..+
T Consensus       293 r~Alr~~d~~~a~~~~~~l--~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~---~~---~fYg~lAa~~Lg~~  363 (618)
T 1qsa_A          293 RMALGTGDRRGLNTWLARL--PMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QR---GFYPMVAAQRIGEE  363 (618)
T ss_dssp             HHHHHHTCHHHHHHHHHHS--CTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SC---SHHHHHHHHHTTCC
T ss_pred             HHHHHCCCHHHHHHHHHHc--cccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---ChHHHHHHHHcCCC
Confidence            3344567777777777766  2211 11222233455666677777777777777763   11   22223322111110


Q ss_pred             C------C-CCchhhh-----HHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHH
Q 006010          595 A------P-QDGTDFL-----NELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINK  657 (664)
Q Consensus       595 ~------~-~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  657 (664)
                      .      + ......+     -.-+..+...|....|...+..+.+.   .++.-...+.......|..+.++..
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~  435 (618)
T 1qsa_A          364 YELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQA  435 (618)
T ss_dssp             CCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHH
Confidence            0      0 0001111     12234577889999999888888753   2444445556666667777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	664
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 9/195 (4%)

Query: 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEIL 425
               Y  L + L +    + A+  + + +      + VV+  L       G  D A +  
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTY 260

Query: 426 FEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED 485
              I          Y +L     E G   +A + +   A   C  +    + L +   E 
Sbjct: 261 RRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYN-TALRLCPTHADSLNNLANIKREQ 318

Query: 486 GKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV 544
           G + EA  ++ + L     P+   A+S++   L   G ++EAL  + E + + P      
Sbjct: 319 GNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---FA 373

Query: 545 FTYNILLNALCKQSN 559
             Y+ + N L +  +
Sbjct: 374 DAYSNMGNTLKEMQD 388

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	664
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.3
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.29
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.28
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.22
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.14
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.12
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.11
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.1
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.09
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.04
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.76
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.6
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.6
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.58
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.58
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.58
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.55
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.54
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.54
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.53
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.47
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.39
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.32
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.31
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.3
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.3
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.27
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.2
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.18
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.15
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.15
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.08
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.03
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.96
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.94
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.91
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.86
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.86
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.81
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.8
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.62
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.6
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.54
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.48
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.12
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.06
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.53
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.21
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.07
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.62
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.3
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.2
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.01
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.1
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	82.65

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.4e-22  Score=194.97  Aligned_cols=384  Identities=15%  Similarity=0.046  Sum_probs=210.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHH
Q 006010          124 IFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVC  203 (664)
Q Consensus       124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~  203 (664)
                      ++..+.+.|++++|++.|+++++.  .|.++.++..++..+.+.|++++|...|+++++..+    -+..++..+..++.
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~a~~~l~~~~~   78 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP----LLAEAYSNLGNVYK   78 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHhh
Confidence            445556666666666666666554  334556666666666666666666666666655211    13345555555666


Q ss_pred             hcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010          204 RLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAK  283 (664)
Q Consensus       204 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  283 (664)
                      +.|++++|++.+....... +.+..............+....+............ ................+....+..
T Consensus        79 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  156 (388)
T d1w3ba_          79 ERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKA  156 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred             hhccccccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHH
Confidence            6666666666655555443 23333333333334444444444433333332221 122222233333334444444444


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006010          284 LVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKF  363 (664)
Q Consensus       284 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  363 (664)
                      .+.......                                    +.+...+..+...+...|++++|...+.+..+..+
T Consensus       157 ~~~~~~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  200 (388)
T d1w3ba_         157 CYLKAIETQ------------------------------------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP  200 (388)
T ss_dssp             HHHHHHHHC------------------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHhhccC------------------------------------cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc
Confidence            444433331                                    12233344444444444455555554444444322


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010          364 HVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSL  443 (664)
Q Consensus       364 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  443 (664)
                      . +...+..+...+...|++++|+..+++....+. .+...+..+...+.+.|++++|...|+++++.. +.+...+..+
T Consensus       201 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  277 (388)
T d1w3ba_         201 N-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNL  277 (388)
T ss_dssp             T-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHH
T ss_pred             c-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            2 344455555555566666666666665555432 244455555666666666666666666666553 4455666666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCH
Q 006010          444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSV  523 (664)
Q Consensus       444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  523 (664)
                      ...+...|++++|.+.++...... +.+...+..+...+...|++++|++.|++.++.. +-+..++..++.+|...|++
T Consensus       278 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~  355 (388)
T d1w3ba_         278 ANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKL  355 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence            666667777777777776666544 4555666666777777777777777777776642 22345666777777777777


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010          524 EEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN  559 (664)
Q Consensus       524 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  559 (664)
                      ++|...|+++++.+|.   +...|..+..+|.+.||
T Consensus       356 ~~A~~~~~~al~l~P~---~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         356 QEALMHYKEAIRISPT---FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCC
Confidence            7777777777654443   45566677777666654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-21  Score=192.16  Aligned_cols=383  Identities=16%  Similarity=0.092  Sum_probs=261.3

Q ss_pred             HHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010           89 LIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG  168 (664)
Q Consensus        89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (664)
                      +.+.+.+.|++++|...++.+.+..+ .+..++..++.+|.+.|++++|+..|+++++.  .|.+..+|..++..+.+.|
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhc
Confidence            56788899999999999999998764 47889999999999999999999999998876  4567889999999999999


Q ss_pred             CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010          169 LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVL  248 (664)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  248 (664)
                      ++++|+..+....+..    +.+..............+....+........... .................+....+..
T Consensus        82 ~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  156 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLK----PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKA  156 (388)
T ss_dssp             CHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred             cccccccccccccccc----cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHH
Confidence            9999999999998732    2344455555556666677777766666555443 3445556666777778888888888


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006010          249 LLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKC  328 (664)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  328 (664)
                      .+....... +.+...+..+...+...|++++|...+++.....+ -+...+..+...+...|++++|...+++....+ 
T Consensus       157 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  233 (388)
T d1w3ba_         157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-  233 (388)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-
Confidence            888877653 33567788888899999999999999998877642 256677788888888888888888888877653 


Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006010          329 MPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSAL  408 (664)
Q Consensus       329 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  408 (664)
                      +.+...+..+...+.+.|++++|...+++..+..+. +...+..+...+...|++++|+..++...... +.+...+..+
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  311 (388)
T d1w3ba_         234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL  311 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHH
Confidence            334555666666667777777777777666655432 44555556666666666666666665555442 2244445555


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 006010          409 IDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG  486 (664)
Q Consensus       409 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  486 (664)
                      ...+...|++++|...|+++++.. +.+..++..+...|...|++++|.+.|++..+.. |.+...|..+..+|.+.|
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            555555555555555555555432 3334444444445555555555555554444433 223334444444444333

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-13  Score=131.79  Aligned_cols=93  Identities=12%  Similarity=0.020  Sum_probs=67.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006010          337 TIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG  416 (664)
Q Consensus       337 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  416 (664)
                      .....+.+.|++++|...|+++.+..+. +...|..+..++...|++++|+..+++..+.... +...+..+...+...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence            4555677778888888888887776544 5667777777788888888888888777765432 5566777777777788


Q ss_pred             ChhHHHHHHHHHHHC
Q 006010          417 KPDEAEEILFEMINN  431 (664)
Q Consensus       417 ~~~~a~~~~~~~~~~  431 (664)
                      ++++|.+.++.+...
T Consensus       102 ~~~~A~~~~~~~~~~  116 (323)
T d1fcha_         102 LQRQACEILRDWLRY  116 (323)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             cccccccchhhHHHh
Confidence            888888877777764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.1e-13  Score=130.27  Aligned_cols=248  Identities=13%  Similarity=0.061  Sum_probs=185.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006010          302 TLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEG  381 (664)
Q Consensus       302 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  381 (664)
                      .....+.+.|++++|...|+++++.. +-+...|..+..++...|++++|...+.+..+..+. +...+..++.+|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence            45667889999999999999999874 446788999999999999999999999999887654 7788899999999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006010          382 KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWK  461 (664)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  461 (664)
                      ++++|.+.++++....  |+..............                   .+.......+..+...+...++.+.+.
T Consensus       102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhc--cchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHH
Confidence            9999999999988753  2221110000000000                   000011111222334455677777877


Q ss_pred             HHHHCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC
Q 006010          462 DMAKNNC-VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS  540 (664)
Q Consensus       462 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  540 (664)
                      +...... ..+...+..+...+...|++++|...+++.+... +-+..+|..++.++...|++++|++.|+++++.+++ 
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-  238 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-  238 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence            7766442 2456678888888999999999999999988753 234678889999999999999999999999876655 


Q ss_pred             CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006010          541 QPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD  578 (664)
Q Consensus       541 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  578 (664)
                        +...|..++.+|.+.|++++|+..|++.++  +.|+
T Consensus       239 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~  272 (323)
T d1fcha_         239 --YIRSRYNLGISCINLGAHREAVEHFLEALN--MQRK  272 (323)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHT
T ss_pred             --cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCc
Confidence              677888999999999999999999999987  4444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.4e-10  Score=106.21  Aligned_cols=235  Identities=15%  Similarity=0.117  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          367 EYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG-KPDEAEEILFEMINNGCAANAFTYSSLMK  445 (664)
Q Consensus       367 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  445 (664)
                      ...++.+...+.+.+.+++|+..++++++.++. +...|+....++...| ++++|+..++.+++.. +.+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            456677777888899999999999999987543 6667888888888776 5899999999998875 667889999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCC---
Q 006010          446 GFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGS---  522 (664)
Q Consensus       446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---  522 (664)
                      .+.+.|++++|++.++.+.+.. +.+...|..+...+...|++++|++.++++++.. +-+...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence            9999999999999999999876 6678899999999999999999999999999864 2356778887777776665   


Q ss_pred             ---HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhccCCCC
Q 006010          523 ---VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLEAPQD  598 (664)
Q Consensus       523 ---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~  598 (664)
                         +++|+..+.+++...|.   +...|..+...+. ....+++.+.++...+....+. ...+..+...+.        
T Consensus       199 ~~~~~~ai~~~~~al~~~P~---~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~--------  266 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPH---NESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE--------  266 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH--------
T ss_pred             hhhhHHhHHHHHHHHHhCCC---chHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH--------
Confidence               67899999999876665   7777877776654 4557888898888887322222 222333333310        


Q ss_pred             chhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010          599 GTDFLNELAIRLFKRQRTSGGFKIVEVMLQ  628 (664)
Q Consensus       599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  628 (664)
                                 ....+..+.+...+++..+
T Consensus       267 -----------~~~~~~~~~~~~~~~ka~~  285 (315)
T d2h6fa1         267 -----------DMLENQCDNKEDILNKALE  285 (315)
T ss_dssp             -----------HHHHTTCSSHHHHHHHHHH
T ss_pred             -----------HHHhcCHHHHHHHHHHHHH
Confidence                       1234666777777777654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.2e-10  Score=103.92  Aligned_cols=231  Identities=14%  Similarity=0.115  Sum_probs=179.7

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006010          333 VTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEG-KAEDAMKLWKQMMEKGCKPNTVVYSALIDG  411 (664)
Q Consensus       333 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  411 (664)
                      ..++.+...+.+.+..++|++.++++.+.++. +...|+....++...| ++++|+..++...+.... +..+|..+...
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~  121 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence            45566677788899999999999999998766 7888999998888876 589999999999987544 78899999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC----
Q 006010          412 LCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGK----  487 (664)
Q Consensus       412 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----  487 (664)
                      +...|++++|+..++++++.. +.+...|..+...+...|++++|++.++.+++.+ +.+...|+.+...+...+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence            999999999999999999975 6789999999999999999999999999999987 5677888888777776665    


Q ss_pred             --hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH--cCChhHH
Q 006010          488 --LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK--QSNISHS  563 (664)
Q Consensus       488 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A  563 (664)
                        +++|++.+.++++.. +.+...|..+...+.. ...+++...++.++...+... +...+..++..|..  .++.+.+
T Consensus       200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~y~~~~~~~~~~~  276 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHS-SPYLIAFLVDIYEDMLENQCDNK  276 (315)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHHHHHhcCHHHH
Confidence              578999999988863 3356777777666544 446888888888866555422 34445555555432  2333444


Q ss_pred             HHHHHHH
Q 006010          564 IDLLNSM  570 (664)
Q Consensus       564 ~~~~~~~  570 (664)
                      ...+++.
T Consensus       277 ~~~~~ka  283 (315)
T d2h6fa1         277 EDILNKA  283 (315)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=3e-09  Score=102.33  Aligned_cols=229  Identities=12%  Similarity=0.011  Sum_probs=121.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHH
Q 006010          408 LIDGLCRVGKPDEAEEILFEMINN----GCAA---NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNC----VYNEVCYS  476 (664)
Q Consensus       408 li~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~  476 (664)
                      +...+...|++..+...+......    +...   ....+..+...+...|+++.+...+........    ......+.
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            334445555555555555544321    1111   112334445556666666666666665554221    11223344


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhC----CCCcC--HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC-CHhHHHH
Q 006010          477 VLIHGLCEDGKLREARMVWTQMLSR----GCKPD--VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP-DVFTYNI  549 (664)
Q Consensus       477 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~  549 (664)
                      .....+...++..++...+.+....    +..+.  ...+..+...+...|++++|...+++.+...+...+ ....+..
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  256 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  256 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            4455556666666666666554421    11111  233455566677778888888888777433332221 1234455


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHH----CCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHH
Q 006010          550 LLNALCKQSNISHSIDLLNSMMD----RGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEV  625 (664)
Q Consensus       550 l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  625 (664)
                      +..++...|++++|...++++..    .+..|+......                    .++.+|...|++++|.+.+++
T Consensus       257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------------~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL--------------------LLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--------------------HHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH--------------------HHHHHHHHCCCHHHHHHHHHH
Confidence            66777788888888888877763    123332222111                    233347888888888888887


Q ss_pred             HHHc----CCCC----ChHHHHHHHHHhcccchHHHHHH
Q 006010          626 MLQK----FLSP----QTSTWERVVQELCRPKRIQAAIN  656 (664)
Q Consensus       626 ~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~A~~  656 (664)
                      +.+.    |...    .......++..+...|+.+++.+
T Consensus       317 Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         317 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            7653    2211    22334555666666677666654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=2.6e-09  Score=102.79  Aligned_cols=272  Identities=12%  Similarity=0.016  Sum_probs=188.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----C-CCCHHHHHHH
Q 006010          373 LISGLFKEGKAEDAMKLWKQMMEKGCKPN----TVVYSALIDGLCRVGKPDEAEEILFEMINNG----C-AANAFTYSSL  443 (664)
Q Consensus       373 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l  443 (664)
                      ....+...|++++|+.++++..+.....+    ..++..+..++...|++++|...++++.+..    . ......+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            34556778888888888888876532212    2356667778888899999999988876531    1 1113455667


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC----CCcCHHhHHH
Q 006010          444 MKGFFESGKGHKAVEIWKDMAKN----NCVY---NEVCYSVLIHGLCEDGKLREARMVWTQMLSRG----CKPDVVAYSS  512 (664)
Q Consensus       444 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~  512 (664)
                      ...+...|++..+...+......    ....   ....+..+...+...|+++.+...+.......    .......+..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            77888999999999988876542    1111   12355667788899999999999998887542    2223455666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC----HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPD----VFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      ....+...|+..++...+.+...........    ...+..+...+...|++++|...+++..+.....+.......   
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---  254 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW---  254 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH---
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH---
Confidence            7777888999999999888775433322222    224556667788999999999999988763222222111110   


Q ss_pred             hhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc----CCCCC-hHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010          589 LKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK----FLSPQ-TSTWERVVQELCRPKRIQAAINKCWSNL  662 (664)
Q Consensus       589 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l  662 (664)
                                     ..++.++...|++++|...++++...    +..|+ ...+..++..+.+.|++++|++.+.+.+
T Consensus       255 ---------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         255 ---------------RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             ---------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ---------------HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                           12344499999999999999988743    33333 4678889999999999999999998765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.7e-08  Score=94.40  Aligned_cols=187  Identities=12%  Similarity=0.062  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006010          383 AEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKD  462 (664)
Q Consensus       383 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  462 (664)
                      .++|..+|++..+...+.+...|...+......|+++.|..+|+.+++........+|...+....+.|+.+.|.++|++
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            45555666665543333344455555566666666666666666666543222234566666666666666666666666


Q ss_pred             HHHCCCCCCHHHHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCC
Q 006010          463 MAKNNCVYNEVCYSVLIHG-LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQ  541 (664)
Q Consensus       463 ~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  541 (664)
                      +.+.. +.+...|...+.. +...|+.+.|..+|+.++.. .+.+...|...+..+.+.|++++|..+|++++...+ ..
T Consensus       160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~-~~  236 (308)
T d2onda1         160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-LP  236 (308)
T ss_dssp             HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-SC
T ss_pred             HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CC
Confidence            66554 2333333333322 23456777777777777664 233456677777777777777777777777754322 22


Q ss_pred             C--CHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          542 P--DVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       542 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      |  ....|...+..-...|+.+.+..+++++.+
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2  234677777766677777777777777765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.1e-08  Score=95.55  Aligned_cols=186  Identities=8%  Similarity=0.012  Sum_probs=96.6

Q ss_pred             hhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010          208 VDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDN  287 (664)
Q Consensus       208 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  287 (664)
                      .++|..+|+...+...+.+...|...+..+.+.|+.+.|..+|+++..........+|...+..+.+.|+++.|.++|++
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            35556666665544334445555666666666666666666666665543222234556666666666666666666666


Q ss_pred             HHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC
Q 006010          288 MFLKGCLPNEVTYNTLIH-GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKF-HV  365 (664)
Q Consensus       288 ~~~~g~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~  365 (664)
                      +...+.. +...|..... .+...|+.+.|..+|+.+... .+.+...|...++...+.|+.+.|..+|++...... .|
T Consensus       160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            6554322 2222222222 223345566666666666554 133445555555555556666666666655554321 11


Q ss_pred             --CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010          366 --NEYIYSTLISGLFKEGKAEDAMKLWKQMME  395 (664)
Q Consensus       366 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  395 (664)
                        ....|...+..-...|+.+.+..+++++.+
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              123445555544455555555555555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=7.4e-10  Score=105.45  Aligned_cols=231  Identities=8%  Similarity=-0.035  Sum_probs=128.3

Q ss_pred             CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHH
Q 006010          311 GNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGR--AVDGARVLMSMEERKFHVNEYIY-STLISGLFKEGKAEDAM  387 (664)
Q Consensus       311 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~  387 (664)
                      |++++|+.+++.+.+.. +.+...|..+..++...++  ++++...+..+.+..+. +...+ ......+...+..+.|+
T Consensus        87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al  164 (334)
T d1dcea1          87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEEL  164 (334)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHH
Confidence            34566666666666543 3345555555555555443  56666666666665433 33333 33445555666777777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010          388 KLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN  467 (664)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  467 (664)
                      ..++.+.+.++. +...|..+...+...|++++|...+....+..  |  . .......+...+..+++...+.......
T Consensus       165 ~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~--~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~  238 (334)
T d1dcea1         165 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--L--K-ELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (334)
T ss_dssp             HHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--H--H-HHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--H--H-HHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence            777766665433 55666666666666676666554443333220  0  0 1122233344555666666666665544


Q ss_pred             CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhH
Q 006010          468 CVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFT  546 (664)
Q Consensus       468 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  546 (664)
                       +++...+..++..+...|+.++|...+.+....  .| +..++..++.++...|++++|.++++++++.+|.   +...
T Consensus       239 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~---~~~y  312 (334)
T d1dcea1         239 -AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM---RAAY  312 (334)
T ss_dssp             -CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG---GHHH
T ss_pred             -cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc---cHHH
Confidence             344444555555566666777777777766654  23 3455666667777777777777777777654432   3344


Q ss_pred             HHHHHHHHH
Q 006010          547 YNILLNALC  555 (664)
Q Consensus       547 ~~~l~~~~~  555 (664)
                      |+.+...+.
T Consensus       313 ~~~L~~~~~  321 (334)
T d1dcea1         313 LDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            554544433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1.7e-09  Score=98.68  Aligned_cols=227  Identities=8%  Similarity=-0.020  Sum_probs=138.4

Q ss_pred             CChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006010          381 GKAEDAMKLWKQMMEKGCKPN---TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAV  457 (664)
Q Consensus       381 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  457 (664)
                      .+.+.++..++++.......+   ..++..+..+|.+.|++++|...|++.++.. +.++.++..+..+|.+.|++++|+
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence            345667777777765432111   2356667778888899999999998888864 567888888888888889999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcC
Q 006010          458 EIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLE  537 (664)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (664)
                      +.|+++.+.. |.+..++..+..++...|++++|...|+..++.. +.+......+..++.+.+..+.+..+........
T Consensus        92 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (259)
T d1xnfa_          92 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD  169 (259)
T ss_dssp             HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred             hhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence            9988888866 4556677788888888888999988888888753 2344444444555556666555555555442211


Q ss_pred             CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcc
Q 006010          538 PKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTS  617 (664)
Q Consensus       538 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  617 (664)
                      .    +...++ ++..+  .+..... ..++.+... .......-.....              ....++.++...|+++
T Consensus       170 ~----~~~~~~-~~~~~--~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~lg~~~~~~g~~~  226 (259)
T d1xnfa_         170 K----EQWGWN-IVEFY--LGNISEQ-TLMERLKAD-ATDNTSLAEHLSE--------------TNFYLGKYYLSLGDLD  226 (259)
T ss_dssp             C----CSTHHH-HHHHH--TTSSCHH-HHHHHHHHH-CCSHHHHHHHHHH--------------HHHHHHHHHHHTTCHH
T ss_pred             h----hhhhhh-HHHHH--HHHHHHH-HHHHHHHHH-HHHhhhcCcccHH--------------HHHHHHHHHHHCCCHH
Confidence            1    111222 12222  2222221 122222221 1111000000000              1123556699999999


Q ss_pred             hHHHHHHHHHHcCCCCCh
Q 006010          618 GGFKIVEVMLQKFLSPQT  635 (664)
Q Consensus       618 ~A~~~~~~~~~~~~~~~~  635 (664)
                      +|.+.|++++..  .|+.
T Consensus       227 ~A~~~~~~al~~--~p~~  242 (259)
T d1xnfa_         227 SATALFKLAVAN--NVHN  242 (259)
T ss_dssp             HHHHHHHHHHTT--CCTT
T ss_pred             HHHHHHHHHHHc--CCCC
Confidence            999999999874  4443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=1e-09  Score=104.47  Aligned_cols=261  Identities=8%  Similarity=-0.037  Sum_probs=159.1

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHH----------HhcCCHHHHHHHHHHhhhcCCCCCCHH
Q 006010           86 FYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAY----------GKAHLVEEAIRLFHTMVDEFHCKRTVK  155 (664)
Q Consensus        86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~A~~~~~~~~~~~~~~~~~~  155 (664)
                      +..++......+..++|..+++.++..+|. +..+|+.....+          ...|++++|+..++..++.  .+.+..
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~  108 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYG  108 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHH
Confidence            333444444444558999999999987754 555665433332          2345578899999888765  566777


Q ss_pred             HHHHHHHHHHHcCC--HhHHHHHHHHHHhcccCCCCcCHHHHH-HHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHH
Q 006010          156 SFNSVLNVIIQEGL--YHRALEFYNHIVNAKHMNILPNTLTFN-LVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCT  232 (664)
Q Consensus       156 ~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  232 (664)
                      .|..+..++...++  +++|...++.+.+..    +++...+. .....+...|.++.|++.++.+.+.+ +-+..+|..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~----~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~  183 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEAD----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHY  183 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHH
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhC----chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHH
Confidence            88888777777654  788999999887722    12444443 34456667788999999998888876 557888888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006010          233 LMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGN  312 (664)
Q Consensus       233 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~  312 (664)
                      +..++.+.|++++|...+......  .|+   ...+...+...+..+++...+....... +++...+..+...+...++
T Consensus       184 l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~  257 (334)
T d1dcea1         184 RSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQS  257 (334)
T ss_dssp             HHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhh
Confidence            888888888888776555443331  011   1112223344455556666666555442 2233334444445555566


Q ss_pred             hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010          313 LDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER  361 (664)
Q Consensus       313 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  361 (664)
                      .++|...+.+..... +.+...+..+...+...|+.++|.+.++.+.+.
T Consensus       258 ~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         258 ELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            666666666555432 123344455555555566666666666665554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=3.7e-09  Score=96.37  Aligned_cols=222  Identities=8%  Similarity=-0.064  Sum_probs=151.6

Q ss_pred             ChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010          347 RAVDGARVLMSMEERKFHV---NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEE  423 (664)
Q Consensus       347 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  423 (664)
                      +.+.++..++++.......   ...++..+..+|.+.|++++|+..|++.++.... +..+|..+..++...|++++|+.
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence            4556666677776542211   2346777888999999999999999999987543 77889999999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 006010          424 ILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC  503 (664)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  503 (664)
                      .|+++++.. +.+...+..+..+|...|++++|.+.++...+.. +.+......+..++...+..+.+..+........ 
T Consensus        93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  169 (259)
T d1xnfa_          93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-  169 (259)
T ss_dssp             HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred             hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence            999999875 5567788889999999999999999999998876 3455554444555556666666666555555432 


Q ss_pred             CcCHHhHHHHHHHHHHcCC----HHHHHHHHHHhhhcCCCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006010          504 KPDVVAYSSMIHGLCNAGS----VEEALKLFNEMLCLEPKSQP-DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD  578 (664)
Q Consensus       504 ~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  578 (664)
                       ++...+. ++..+.....    .+.+...+.....    ..| ...+|..+...|...|++++|...|++.+.  ..|+
T Consensus       170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~  241 (259)
T d1xnfa_         170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS----LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVH  241 (259)
T ss_dssp             -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCT
T ss_pred             -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh----cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCC
Confidence             2221222 2222222222    2222222222211    112 223566788899999999999999999987  5666


Q ss_pred             HH
Q 006010          579 LV  580 (664)
Q Consensus       579 ~~  580 (664)
                      ..
T Consensus       242 ~~  243 (259)
T d1xnfa_         242 NF  243 (259)
T ss_dssp             TC
T ss_pred             CH
Confidence            43

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.6e-07  Score=78.78  Aligned_cols=155  Identities=12%  Similarity=0.072  Sum_probs=111.2

Q ss_pred             HHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010          479 IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS  558 (664)
Q Consensus       479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  558 (664)
                      ...+...|++++|++.|.++.    +|+..+|..++.+|...|++++|++.|+++++.++.   +...|..+..+|.+.|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~---~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh---hhhhHHHHHHHHHhhc
Confidence            455778899999999998642    567788889999999999999999999999887766   6778999999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHH-HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHH
Q 006010          559 NISHSIDLLNSMMDRGCDPDLV-TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTST  637 (664)
Q Consensus       559 ~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  637 (664)
                      ++++|+..|++.+... +.+.. .+..+      .....-...+.+-.++.++.+.|++++|.+.++++.+.  .|++  
T Consensus        85 ~~~~A~~~~~kAl~~~-~~n~~~~~~~~------~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~--~~~~--  153 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQL-RGNQLIDYKIL------GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP--  153 (192)
T ss_dssp             CHHHHHHHHHHHHHTT-TTCSEEECGGG------TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG--
T ss_pred             cHHHHHHHHHHHHHhC-ccCchHHHHHh------hhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc--
Confidence            9999999999988631 11110 00000      00000011233446777799999999999999999874  4443  


Q ss_pred             HHHHHHHhcccchHHHHHHHHHh
Q 006010          638 WERVVQELCRPKRIQAAINKCWS  660 (664)
Q Consensus       638 ~~~l~~~~~~~g~~~~A~~~~~~  660 (664)
                               ..+..+.|+..+++
T Consensus       154 ---------~~~~~~~Al~~~~~  167 (192)
T d1hh8a_         154 ---------RHSKIDKAMECVWK  167 (192)
T ss_dssp             ---------GGGHHHHHHHHHHT
T ss_pred             ---------chHHHHHHHHHHHh
Confidence                     44555666665554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=6.9e-07  Score=68.94  Aligned_cols=103  Identities=13%  Similarity=0.047  Sum_probs=76.9

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc
Q 006010          478 LIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ  557 (664)
Q Consensus       478 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  557 (664)
                      -...+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++++++.++.   +...|..+..++...
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc---hhhHHHHHHHHHHHc
Confidence            3556777888888888888887753 335667888888888888888888888888766655   667788888888888


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          558 SNISHSIDLLNSMMDRGCDPDLVTCNIFL  586 (664)
Q Consensus       558 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll  586 (664)
                      |++++|+..+++..+  ..|+...+...+
T Consensus        85 ~~~~~A~~~~~~a~~--~~p~~~~~~~~l  111 (117)
T d1elwa_          85 NRFEEAKRTYEEGLK--HEANNPQLKEGL  111 (117)
T ss_dssp             TCHHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            888888888888886  567665544433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1e-06  Score=74.93  Aligned_cols=87  Identities=9%  Similarity=-0.041  Sum_probs=53.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHh
Q 006010          125 FKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCR  204 (664)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  204 (664)
                      +..+...|+++.|++.|..+     .++++.+|..++.++...|++++|++.|++.++.++    .+...|..+..++.+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp----~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK----HLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh----hhhhhHHHHHHHHHh
Confidence            44556666777777766654     345666666667777777777777777777666221    134456666666666


Q ss_pred             cCChhHHHHHHhhccc
Q 006010          205 LGLVDNAIQLFREMPV  220 (664)
Q Consensus       205 ~g~~~~A~~~~~~~~~  220 (664)
                      .|++++|++.|++...
T Consensus        83 ~g~~~~A~~~~~kAl~   98 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALI   98 (192)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHH
Confidence            6666666666665543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=1.3e-06  Score=80.41  Aligned_cols=135  Identities=7%  Similarity=0.036  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhC----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HH
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRRE----K-RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT----VK  155 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~  155 (664)
                      .|......|...|++++|...|.++...    + .+....++..++.+|.+.|++++|++.++...+......+    ..
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            4555566666777777777777666542    1 1112234566666666666666666666654432111111    23


Q ss_pred             HHHHHHHHHHH-cCCHhHHHHHHHHHHhccc-CCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010          156 SFNSVLNVIIQ-EGLYHRALEFYNHIVNAKH-MNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMP  219 (664)
Q Consensus       156 ~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~-~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  219 (664)
                      ++..++..|.. .|++++|.+.|+++.+... .+..+ -..++..+...+...|++++|++.|+++.
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~  185 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI  185 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            34444444433 3666666666655543100 00001 01234445555555555555555555543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=5.1e-07  Score=83.15  Aligned_cols=200  Identities=7%  Similarity=0.009  Sum_probs=130.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CC-CcCHHhHHHH
Q 006010          444 MKGFFESGKGHKAVEIWKDMAKN----NCVY-NEVCYSVLIHGLCEDGKLREARMVWTQMLSR----GC-KPDVVAYSSM  513 (664)
Q Consensus       444 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l  513 (664)
                      ...|...|++++|.+.|.++.+.    +.++ -..+|..+..+|.+.|++++|.+.+++..+.    |. .....++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            45677888888888888877652    1111 2346788888899999999999998877643    11 1113456666


Q ss_pred             HHHHHH-cCCHHHHHHHHHHhhhcCCCC--CC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010          514 IHGLCN-AGSVEEALKLFNEMLCLEPKS--QP-DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL  589 (664)
Q Consensus       514 ~~~~~~-~g~~~~A~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~  589 (664)
                      +..|.. .|++++|+..+++++......  .+ ...++..+...+...|++++|++.++++...........+..     
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~-----  198 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL-----  198 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH-----
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH-----
Confidence            777754 699999999999886432211  11 133577888999999999999999999887321111111100     


Q ss_pred             hhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCC---C---hHHHHHHHHHhcc--cchHHHHHHHHHh
Q 006010          590 KEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSP---Q---TSTWERVVQELCR--PKRIQAAINKCWS  660 (664)
Q Consensus       590 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~---~~~~~~l~~~~~~--~g~~~~A~~~~~~  660 (664)
                                ...+...+.++...|+++.|.+.+++..+.  .|   +   ......++.++-.  .+.+++|+..|.+
T Consensus       199 ----------~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~--~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~  265 (290)
T d1qqea_         199 ----------KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN  265 (290)
T ss_dssp             ----------HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred             ----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence                      001112233477899999999999998764  22   1   2345566666544  4568999987754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=7.2e-07  Score=73.47  Aligned_cols=99  Identities=9%  Similarity=0.064  Sum_probs=71.3

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc
Q 006010          478 LIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ  557 (664)
Q Consensus       478 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  557 (664)
                      ....|.+.|++++|+..|+++++.. +-+...|..+..+|...|++++|...|+++++.++.   +...|..++.++...
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~---~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc---chHHHHHHHHHHHHc
Confidence            4556777788888888888777753 334667777777888888888888888888765554   566777777788888


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHH
Q 006010          558 SNISHSIDLLNSMMDRGCDPDLVTC  582 (664)
Q Consensus       558 g~~~~A~~~~~~~~~~~~~p~~~~~  582 (664)
                      |++++|...+++...  +.|+....
T Consensus        92 g~~~eA~~~~~~a~~--~~p~~~~~  114 (159)
T d1a17a_          92 GKFRAALRDYETVVK--VKPHDKDA  114 (159)
T ss_dssp             TCHHHHHHHHHHHHH--HSTTCHHH
T ss_pred             CCHHHHHHHHHHHHH--cCCCCHHH
Confidence            888888888888777  45554443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.55  E-value=0.00012  Score=65.74  Aligned_cols=111  Identities=8%  Similarity=-0.120  Sum_probs=53.1

Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChH
Q 006010          243 LDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK----NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL----KGNLD  314 (664)
Q Consensus       243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~  314 (664)
                      ...+...+......   .+...+..|...|..    ..+...+...++...+.|   +..+...+...+..    ..+++
T Consensus       126 ~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~  199 (265)
T d1ouva_         126 FKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK  199 (265)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             hHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence            34444444444442   244445555554443    234445555555544433   33344444433333    34566


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 006010          315 KAVSLLDRMVASKCMPNEVTYGTIINGLVK----LGRAVDGARVLMSMEERK  362 (664)
Q Consensus       315 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~  362 (664)
                      +|..+|++..+.|   ++..+..|...|.+    ..+.++|.++|++..+.|
T Consensus       200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            6666666665554   34444445544443    224555666665555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.1e-06  Score=72.23  Aligned_cols=121  Identities=11%  Similarity=0.113  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHh
Q 006010          510 YSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV-TCNIFLTA  588 (664)
Q Consensus       510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~  588 (664)
                      +...+..|.+.|++++|+..|++++...|.   +...|..+..+|...|++++|+..|+++++  +.|+.. .+..+...
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~   87 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchh---hhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHH
Confidence            344567788999999999999999887766   788999999999999999999999999998  566654 34333333


Q ss_pred             hhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHh--cccchHHHHHHH
Q 006010          589 LKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQEL--CRPKRIQAAINK  657 (664)
Q Consensus       589 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~  657 (664)
                                           +...|++++|.+.++++.+.. +-++..+..+..+.  ...+.+++|+..
T Consensus        88 ---------------------~~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          88 ---------------------NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             ---------------------HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                                 999999999999999999852 33566666665543  344556677654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.54  E-value=0.00026  Score=63.42  Aligned_cols=61  Identities=13%  Similarity=-0.067  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHc
Q 006010          228 YTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK----NGELGRAAKLVDNMFLK  291 (664)
Q Consensus       228 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~  291 (664)
                      ..+..|...+...+++++|++.|++..+.|   +...+..|...|..    ..+...|...+......
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~   67 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   67 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence            334444444444555555555555554443   33333334444433    33444455444444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.5e-06  Score=67.04  Aligned_cols=91  Identities=11%  Similarity=-0.053  Sum_probs=47.2

Q ss_pred             HHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010           89 LIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG  168 (664)
Q Consensus        89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (664)
                      ..+.+...|++++|...|+.+++..+ .+..+|..++.+|...|++++|+..|...++.  .+.++..|..++.++...|
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHcc
Confidence            34445555555555555555554442 24445555555555555555555555555443  3344455555555555555


Q ss_pred             CHhHHHHHHHHHHh
Q 006010          169 LYHRALEFYNHIVN  182 (664)
Q Consensus       169 ~~~~A~~~~~~~~~  182 (664)
                      ++++|+..|++..+
T Consensus        86 ~~~~A~~~~~~a~~   99 (117)
T d1elwa_          86 RFEEAKRTYEEGLK   99 (117)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555555544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=3.2e-07  Score=79.35  Aligned_cols=99  Identities=16%  Similarity=0.062  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH
Q 006010          470 YNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI  549 (664)
Q Consensus       470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  549 (664)
                      |+...+...+..+.+.|++++|+..|++++... +.+...|..++.+|.+.|++++|+..|+++++.+|.   +...|..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~---~~~a~~~   77 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFF   77 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC---cHHHHHH
Confidence            677778888999999999999999999998864 446788999999999999999999999999765554   6778999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHH
Q 006010          550 LLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       550 l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      +..+|.+.|++++|+..|+++.+
T Consensus        78 lg~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999999886

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=2.1e-06  Score=74.05  Aligned_cols=99  Identities=9%  Similarity=0.008  Sum_probs=82.8

Q ss_pred             CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 006010           81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV  160 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  160 (664)
                      |+...+......+.+.|+++.|...|..++...+ .+..+|..++.+|.+.|++++|+..|...++.  .+.++.+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence            6777788888889999999999999988888764 47778888888999999999999999888764  34567788889


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHh
Q 006010          161 LNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       161 ~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      +.++.+.|++++|+..|+++++
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999888866

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.32  E-value=0.00099  Score=60.75  Aligned_cols=135  Identities=7%  Similarity=0.064  Sum_probs=88.2

Q ss_pred             ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010           82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL  161 (664)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  161 (664)
                      +..--..++..|.+.|.++.|..+|..+.         -+..++..+.+.++++.|.+.+.+.       .+..+|..+.
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~   76 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVC   76 (336)
T ss_dssp             ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHH
Confidence            44445567888999999999999997655         3567778888999999999988765       3567888899


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC
Q 006010          162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN  241 (664)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  241 (664)
                      ..+.+.....-|.-+     .   .....+......++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus        77 ~~l~~~~e~~la~i~-----~---~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          77 FACVDGKEFRLAQMC-----G---LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHTTCHHHHHHT-----T---TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred             HHHHhCcHHHHHHHH-----H---HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence            998888776543221     1   1222344455678888899999999999998765442 557778888988888864

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.31  E-value=2.1e-06  Score=65.51  Aligned_cols=94  Identities=6%  Similarity=-0.088  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVI  164 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (664)
                      .+......+.+.|++++|...|+.++..++. +..+|..++.++.+.|++++|+..|++.++.  .|.+..+|..++..|
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y   94 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH   94 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHH
Confidence            3455667778888888888888888877643 6778888888888888888888888887765  455677888888888


Q ss_pred             HHcCCHhHHHHHHHHHH
Q 006010          165 IQEGLYHRALEFYNHIV  181 (664)
Q Consensus       165 ~~~~~~~~A~~~~~~~~  181 (664)
                      ...|++++|.+.+++.+
T Consensus        95 ~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          95 TNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHh
Confidence            88888888888887753

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.30  E-value=2.8e-06  Score=64.71  Aligned_cols=90  Identities=16%  Similarity=0.137  Sum_probs=67.8

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc
Q 006010          478 LIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ  557 (664)
Q Consensus       478 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  557 (664)
                      +...+.+.|++++|...|++.+... +-+..+|..++.++.+.|++++|+..|+++++.+|.   +...|..+...|...
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~la~~y~~~   97 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc---cccchHHHHHHHHHC
Confidence            4556777888888888888877753 224677778888888888888888888888766555   667777788888888


Q ss_pred             CChhHHHHHHHHHH
Q 006010          558 SNISHSIDLLNSMM  571 (664)
Q Consensus       558 g~~~~A~~~~~~~~  571 (664)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            88888888887754

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.30  E-value=0.0013  Score=60.04  Aligned_cols=137  Identities=15%  Similarity=0.092  Sum_probs=73.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHH
Q 006010          151 KRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTY  230 (664)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  230 (664)
                      .++..--..++..|.+.|.++.|..+|..+..            |..++..+.+.++++.|.+++....      +..+|
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d------------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~   72 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------------FGRLASTLVHLGEYQAAVDGARKAN------STRTW   72 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTTC------------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC------------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHH
Confidence            34544556667777777777777777776533            5566677777777777777665432      45667


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010          231 CTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLK  310 (664)
Q Consensus       231 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  310 (664)
                      ..+...+.+......+     .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus        73 k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          73 KEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence            6677666666554332     1222222334555566777777777777777777765433 234556667777777664


Q ss_pred             C
Q 006010          311 G  311 (664)
Q Consensus       311 g  311 (664)
                      +
T Consensus       147 ~  147 (336)
T d1b89a_         147 K  147 (336)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=7e-06  Score=63.23  Aligned_cols=94  Identities=14%  Similarity=0.113  Sum_probs=47.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHH
Q 006010          443 LMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGK---LREARMVWTQMLSRGCKPD-VVAYSSMIHGLC  518 (664)
Q Consensus       443 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~  518 (664)
                      +++.+...+++++|.+.|+.....+ |.+..++..+..++.+.++   +++|+.++++++..+..|+ ..++..++.+|.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4444455555555555555555544 3444555555555544332   2345555555554332222 124455555555


Q ss_pred             HcCCHHHHHHHHHHhhhcC
Q 006010          519 NAGSVEEALKLFNEMLCLE  537 (664)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~  537 (664)
                      +.|++++|++.|+++++.+
T Consensus        84 ~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhhHHHHHHHHHHHHhC
Confidence            5555555555555555433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=6.7e-06  Score=64.37  Aligned_cols=112  Identities=9%  Similarity=0.146  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 006010          509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL-VTCNIFLT  587 (664)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~  587 (664)
                      .+..++..+...|++++|+..|++++..+|.   +...|..+..+|.+.|++++|+..++++++  +.|+. ..+..+..
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~   80 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAK   80 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence            3456778889999999999999999876655   778889999999999999999999999886  33322 22322222


Q ss_pred             hhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHH
Q 006010          588 ALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERV  641 (664)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  641 (664)
                      +              +..++.++...+++++|.+++++....  .+++.....+
T Consensus        81 ~--------------~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l  118 (128)
T d1elra_          81 A--------------YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC  118 (128)
T ss_dssp             H--------------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred             H--------------HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence            2              234666699999999999999998863  5666555444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.4e-05  Score=66.13  Aligned_cols=76  Identities=9%  Similarity=0.023  Sum_probs=62.3

Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLT  587 (664)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~  587 (664)
                      .+|+.+..+|.+.|++++|+..+++++..+|.   +...|..+..+|...|++++|+..|+++.+  +.|+.......+.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~  137 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLA  137 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcccc---chhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            35677888899999999999999999876665   778888999999999999999999999988  6776655554444


Q ss_pred             h
Q 006010          588 A  588 (664)
Q Consensus       588 ~  588 (664)
                      .
T Consensus       138 ~  138 (170)
T d1p5qa1         138 V  138 (170)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.5e-06  Score=64.34  Aligned_cols=95  Identities=8%  Similarity=0.056  Sum_probs=66.2

Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 006010           87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAH---LVEEAIRLFHTMVDEFHCKRTVKSFNSVLNV  163 (664)
Q Consensus        87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (664)
                      ..+++.+...+++++|.+.|+..+..++ .+..++..++.++.+.+   ++++|+++|++++.....+....+|..++.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            3466777777888888888888887664 36677777777777644   4445888888775431111113467778888


Q ss_pred             HHHcCCHhHHHHHHHHHHh
Q 006010          164 IIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~  182 (664)
                      |.+.|++++|++.|+++++
T Consensus        82 y~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHH
Confidence            8888888888888888877

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.15  E-value=3.6e-05  Score=62.26  Aligned_cols=76  Identities=9%  Similarity=0.002  Sum_probs=64.2

Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLT  587 (664)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~  587 (664)
                      .+|..++.+|.+.|++++|+..+++++..+|.   +...|..++.++...|++++|+..|++..+  +.|+.......+.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~---~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~  142 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN---NVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYE  142 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccch---hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            46777888999999999999999999877665   778899999999999999999999999998  6787666555555


Q ss_pred             h
Q 006010          588 A  588 (664)
Q Consensus       588 ~  588 (664)
                      .
T Consensus       143 ~  143 (153)
T d2fbna1         143 L  143 (153)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.9e-05  Score=64.14  Aligned_cols=121  Identities=12%  Similarity=-0.014  Sum_probs=81.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC------------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010          512 SMIHGLCNAGSVEEALKLFNEMLCLEPKSQP------------DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL  579 (664)
Q Consensus       512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  579 (664)
                      ..+..+.+.|++++|+..|++++...+....            ...+|+.+..+|.+.|++++|+..+++.++  +.|+.
T Consensus        18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~   95 (170)
T d1p5qa1          18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNN   95 (170)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh--ccccc
Confidence            3444555566666666666555433221110            123567788889999999999999999998  57765


Q ss_pred             HHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHH
Q 006010          580 VTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAI  655 (664)
Q Consensus       580 ~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  655 (664)
                      ......+.                    .+|...|++++|...|+++.+.. +.++.+...+..+.-+.+...+..
T Consensus        96 ~~a~~~~g--------------------~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          96 EKGLSRRG--------------------EAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHH--------------------HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHH--------------------HHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            44333333                    33999999999999999999852 336777777777766655555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.4e-05  Score=61.07  Aligned_cols=97  Identities=10%  Similarity=0.121  Sum_probs=67.6

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC----HhHHHHH
Q 006010          475 YSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD----VFTYNIL  550 (664)
Q Consensus       475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l  550 (664)
                      +..+...+...|++++|+..|++.++.+ +.+..++..+..+|.+.|++++|+..+++++..++.....    ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3456667777888888888888877753 3346677778888888888888888888876554432211    1245566


Q ss_pred             HHHHHHcCChhHHHHHHHHHHH
Q 006010          551 LNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       551 ~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      ...+...+++++|+..|++...
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Confidence            6677777888888888887775

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=9.1e-06  Score=80.72  Aligned_cols=93  Identities=10%  Similarity=-0.021  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHH
Q 006010          437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIH  515 (664)
Q Consensus       437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~  515 (664)
                      ...+..+...+.+.|+.++|...++......   ...++..+...+...|++++|...|++..+.  .|+ ...|+.++.
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~  194 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAI  194 (497)
T ss_dssp             -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHH
Confidence            3344444444555555555554444433311   1223444455555555555555555555543  222 244555555


Q ss_pred             HHHHcCCHHHHHHHHHHhh
Q 006010          516 GLCNAGSVEEALKLFNEML  534 (664)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~  534 (664)
                      .+...|+..+|+..|.+++
T Consensus       195 ~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         195 LASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            5555555555555555553

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.03  E-value=3.8e-05  Score=63.30  Aligned_cols=77  Identities=8%  Similarity=0.061  Sum_probs=63.5

Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLT  587 (664)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~  587 (664)
                      .+|..+..+|.+.|++++|+..+++++.++|.   +...|..+..++...|++++|...|+++++  +.|+.......+.
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~---~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~  139 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIF  139 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            35667788889999999999999999877665   778888899999999999999999999998  6787766555555


Q ss_pred             hh
Q 006010          588 AL  589 (664)
Q Consensus       588 ~~  589 (664)
                      .+
T Consensus       140 ~~  141 (168)
T d1kt1a1         140 MC  141 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.3e-06  Score=82.47  Aligned_cols=228  Identities=12%  Similarity=-0.015  Sum_probs=119.3

Q ss_pred             hHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHH
Q 006010          101 SLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVLNVIIQEGLYHRALEFYNH  179 (664)
Q Consensus       101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~  179 (664)
                      +|.+.|+++.+..+. ...++..+..++...|++++|   |++++..   .|+ ....+... .+.+ ..+..+.+.++.
T Consensus         4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e~-~Lw~-~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVEQ-DLWN-HAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHHH-HHHH-HHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHHH-HHHH-HHHHHHHHHHHH
Confidence            466777777654322 222455566666777777766   5555432   221 11221111 1111 124556666766


Q ss_pred             HHhcccCCCCcCHHHHH--HHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006010          180 IVNAKHMNILPNTLTFN--LVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDG  257 (664)
Q Consensus       180 ~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  257 (664)
                      ..+.   .-.++..-..  .........+.++.|+..+....... +++...+..+...+.+.|+.++|...++......
T Consensus        75 ~~k~---~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  150 (497)
T d1ya0a1          75 QAKN---RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI  150 (497)
T ss_dssp             HHSC---SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH
T ss_pred             hccc---ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC
Confidence            6552   1122222111  11222233566777777777665443 3456677778888888888888888777665421


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 006010          258 CFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGT  337 (664)
Q Consensus       258 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  337 (664)
                         ...++..+...+...|++++|...|++.....+ -+...|+.+...+...|+..+|...|.+.+... +|.+.++..
T Consensus       151 ---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~n  225 (497)
T d1ya0a1         151 ---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTN  225 (497)
T ss_dssp             ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence               235677788888899999999999999887743 255789999999999999999999999988764 567777777


Q ss_pred             HHHHHHhcC
Q 006010          338 IINGLVKLG  346 (664)
Q Consensus       338 ll~~~~~~~  346 (664)
                      |...+.+..
T Consensus       226 L~~~~~~~~  234 (497)
T d1ya0a1         226 LQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            777765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.96  E-value=2e-05  Score=63.05  Aligned_cols=97  Identities=18%  Similarity=0.119  Sum_probs=63.3

Q ss_pred             CChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----------cCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHH
Q 006010          486 GKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----------AGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC  555 (664)
Q Consensus       486 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  555 (664)
                      +.+++|+..|+..++.. +.+..++..+..++..          .+.+++|+..|+++++++|.   +...|..+..+|.
T Consensus        11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~---~~~a~~~lG~~y~   86 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch---hhHHHhhHHHHHH
Confidence            34555555555555532 2234445555544442          24457788888888776665   6777877887776


Q ss_pred             HcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          556 KQS-----------NISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       556 ~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      ..|           ++++|.+.|+++++  +.|+...+...+..
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM  128 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHH
Confidence            654           36889999999988  78888777666655

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.94  E-value=0.00017  Score=58.16  Aligned_cols=96  Identities=10%  Similarity=-0.039  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHhCCCC----cC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 006010           85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRV----VL-----------EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFH  149 (664)
Q Consensus        85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  149 (664)
                      .+..-...+.+.|++..|...|..++..-..    .+           ..++..++.+|.+.|++++|++.++..++.  
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~--   96 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--   96 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc--
Confidence            3444567778888888888888887753211    11           112334455555555555555555555443  


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          150 CKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      .|.++.+|..++.++...|++++|+..|+..++
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            334455555555555555555555555555554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.91  E-value=6.6e-05  Score=61.94  Aligned_cols=77  Identities=9%  Similarity=0.011  Sum_probs=62.2

Q ss_pred             HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010          507 VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFL  586 (664)
Q Consensus       507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll  586 (664)
                      ...|..+..++.+.|++++|+..++++++.+|.   +...|..+..++...|++++|+..|+++++  +.|+.......+
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~---~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l  151 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh---hhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            456777888999999999999999999876654   677899999999999999999999999998  677655444333


Q ss_pred             Hh
Q 006010          587 TA  588 (664)
Q Consensus       587 ~~  588 (664)
                      ..
T Consensus       152 ~~  153 (169)
T d1ihga1         152 LK  153 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.86  E-value=0.00036  Score=57.21  Aligned_cols=59  Identities=7%  Similarity=-0.085  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006010          196 NLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQV  255 (664)
Q Consensus       196 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  255 (664)
                      ..+..+|.+.|++++|+..++..+..+ +.+..+|..+..++...|++++|...|+++..
T Consensus        68 ~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          68 LNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444445555555555555544433 33444455555555555555555555555444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=0.00014  Score=59.88  Aligned_cols=81  Identities=14%  Similarity=0.029  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHH
Q 006010          471 NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNIL  550 (664)
Q Consensus       471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  550 (664)
                      ....|..+..++.+.|++++|+..++++++.. +.+..+|..++.++...|++++|+..|+++++.+|+   +......+
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~---n~~~~~~l  151 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE---DKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence            44567778888999999999999999999864 345788999999999999999999999999877665   55555555


Q ss_pred             HHHHH
Q 006010          551 LNALC  555 (664)
Q Consensus       551 ~~~~~  555 (664)
                      ..+..
T Consensus       152 ~~~~~  156 (169)
T d1ihga1         152 LKVKQ  156 (169)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.81  E-value=0.00018  Score=59.45  Aligned_cols=123  Identities=11%  Similarity=0.035  Sum_probs=85.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCC
Q 006010          443 LMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGS  522 (664)
Q Consensus       443 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  522 (664)
                      ........|++++|.+.|.......-.+ ..         ......+-+...-..+..    -....+..++.++...|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l---------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGP-VL---------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSS-TT---------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCccc-cc---------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence            3446677788888888888877642111 00         000000011111111111    123467788999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 006010          523 VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD-----RGCDPDLVTC  582 (664)
Q Consensus       523 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~  582 (664)
                      +++|+..+++++..+|.   +...|..++.+|.+.|+.++|++.|+++.+     .|+.|...+-
T Consensus        83 ~~~Al~~~~~al~~~P~---~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          83 ASAVIAELEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             chHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            99999999999887776   888999999999999999999999999853     5899987653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=0.00018  Score=59.53  Aligned_cols=59  Identities=8%  Similarity=0.075  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          194 TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEM  253 (664)
Q Consensus       194 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  253 (664)
                      .+..+..++.+.|++++|+..++.+.... +-+...|..++.+|...|+.++|++.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34445555555555555555555555543 345555555555555555555555555554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.62  E-value=0.00013  Score=64.63  Aligned_cols=122  Identities=10%  Similarity=0.041  Sum_probs=79.1

Q ss_pred             HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHHHHhcC
Q 006010          128 YGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKTVCRLG  206 (664)
Q Consensus       128 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g  206 (664)
                      ..+.|++++|+..+++.++.  .|.+...+..++..++..|++++|...|+...+     ..|+ ...+..+...+...+
T Consensus         6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~-----l~P~~~~~~~~l~~ll~a~~   78 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK-----LFPEYLPGASQLRHLVKAAQ   78 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHhcc
Confidence            45678888999888888775  566788888888889999999999988888877     3344 334444444444444


Q ss_pred             ChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006010          207 LVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVD  256 (664)
Q Consensus       207 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  256 (664)
                      ..+++..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus        79 ~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          79 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            44443332222222221223334444556677788888888888877654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.60  E-value=0.00012  Score=58.31  Aligned_cols=86  Identities=10%  Similarity=0.070  Sum_probs=56.8

Q ss_pred             HhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 006010           94 ANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKA----------HLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNV  163 (664)
Q Consensus        94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (664)
                      -+.+.|++|...|+.+.+.+| .+..++..+..++...          +.+++|+..|++.++.  .|.+..+|..++.+
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHHH
Confidence            344557788888888887763 3667777777766543          4456777777777664  45566777777777


Q ss_pred             HHHcCC-----------HhHHHHHHHHHHh
Q 006010          164 IIQEGL-----------YHRALEFYNHIVN  182 (664)
Q Consensus       164 ~~~~~~-----------~~~A~~~~~~~~~  182 (664)
                      |...|+           +++|.+.|+++++
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence            765542           4556666666655

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.54  E-value=0.00013  Score=64.61  Aligned_cols=121  Identities=15%  Similarity=0.123  Sum_probs=77.4

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHH
Q 006010          447 FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEE  525 (664)
Q Consensus       447 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~  525 (664)
                      ..+.|++++|+..+++.++.. |.+...+..++..++..|++++|.+.++...+.  .|+ ...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence            346688888888888888776 667778888888888888888888888888775  454 3444444444444444433


Q ss_pred             HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010          526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD  572 (664)
Q Consensus       526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  572 (664)
                      +..-....  ...+..++...+......+...|+.++|.+.++++.+
T Consensus        83 a~~~~~~~--~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          83 FAQGAATA--KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             HTTSCCCE--ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhh--hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            33222111  1111112223334445567788999999999988886

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.48  E-value=0.0011  Score=53.29  Aligned_cols=106  Identities=15%  Similarity=0.151  Sum_probs=73.9

Q ss_pred             HhHHHH--HHHHHHcCCHHHHHHHHHHhhhcCCCCCC---------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC---
Q 006010          508 VAYSSM--IHGLCNAGSVEEALKLFNEMLCLEPKSQP---------DVFTYNILLNALCKQSNISHSIDLLNSMMDR---  573 (664)
Q Consensus       508 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---  573 (664)
                      .+|..+  +..+...|++++|+..|++++...+....         ....|+.+..+|.+.|++++|+..+++.++.   
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            345555  55566789999999999999765553321         1356888899999999999999999998852   


Q ss_pred             --CCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010          574 --GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK  629 (664)
Q Consensus       574 --~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  629 (664)
                        ...++....  ...              .+..++.+|...|++++|.+.|+++.+.
T Consensus        88 ~~~~~~~~~~~--~~~--------------a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          88 RGELNQDEGKL--WIS--------------AVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HCCTTSTHHHH--HHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccccccccch--hHH--------------HHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence              122222111  111              1234566799999999999999998764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.31  E-value=0.00095  Score=53.76  Aligned_cols=58  Identities=10%  Similarity=-0.000  Sum_probs=35.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhcCCCCCC----------HHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          125 FKAYGKAHLVEEAIRLFHTMVDEFHCKRT----------VKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      +..+...|++++|++.|.+.++.....|+          ...|+.+..+|.+.|++++|+..++..++
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            44455667777777777776653222221          24566667777777777777776666654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.0017  Score=46.82  Aligned_cols=61  Identities=10%  Similarity=0.032  Sum_probs=25.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhcCCCC----CC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010          122 IFIFKAYGKAHLVEEAIRLFHTMVDEFHCK----RT-VKSFNSVLNVIIQEGLYHRALEFYNHIVN  182 (664)
Q Consensus       122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  182 (664)
                      ..++..+.+.|++++|+.+|++.++.....    ++ ..+++.++.++.+.|++++|+..|+++++
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            344444444444444444444443321111    11 23344444444444444444444444444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0024  Score=45.99  Aligned_cols=78  Identities=10%  Similarity=0.078  Sum_probs=62.8

Q ss_pred             CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCC------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 006010           81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKR------VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV  154 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  154 (664)
                      .+.+.+..+...+.+.|+++.|...|+++++..+      .....++..++.++.+.|++++|+..|+++++.  .|.+.
T Consensus         3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~   80 (95)
T d1tjca_           3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQ   80 (95)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCH
Confidence            3677889999999999999999999999876421      122567889999999999999999999999876  34456


Q ss_pred             HHHHHH
Q 006010          155 KSFNSV  160 (664)
Q Consensus       155 ~~~~~l  160 (664)
                      .+++.+
T Consensus        81 ~a~~Nl   86 (95)
T d1tjca_          81 RANGNL   86 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.36  Score=45.89  Aligned_cols=404  Identities=11%  Similarity=0.052  Sum_probs=214.4

Q ss_pred             HHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 006010          200 KTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK--ENRLDEAVLLLDEMQVDGCFPT-PVTFNVLINGLCKNG  276 (664)
Q Consensus       200 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g  276 (664)
                      .-..+.|+.+.+.++...+...   | ...|-..-..-..  ....++...++++-..   .|- ...-...+..+.+.+
T Consensus        14 ~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~---~P~~~~lr~~~l~~L~~~~   86 (450)
T d1qsaa1          14 KQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPT---LPPARTLQSRFVNELARRE   86 (450)
T ss_dssp             HHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHhcc
Confidence            3355678888888888777432   2 2334333332222  2334444443333211   111 122234456677778


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 006010          277 ELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLM  356 (664)
Q Consensus       277 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  356 (664)
                      ++...+..+.     ..+.+...-.....+....|+.+.|...+..+...| ...+..+..+...+.+.|.+        
T Consensus        87 ~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~l--------  152 (450)
T d1qsaa1          87 DWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ--------  152 (450)
T ss_dssp             CHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS--------
T ss_pred             CHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCCC--------
Confidence            8766554332     123355555566677778888888888888877665 23334444444444443332        


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006010          357 SMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAAN  436 (664)
Q Consensus       357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  436 (664)
                               +...+-.-+......|+...|..+...+...    ........+....   +...+....   ...  +.+
T Consensus       153 ---------t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~---~p~~~~~~~---~~~--~~~  211 (450)
T d1qsaa1         153 ---------DPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLAN---NPNTVLTFA---RTT--GAT  211 (450)
T ss_dssp             ---------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHH---CGGGHHHHH---HHS--CCC
T ss_pred             ---------CHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHh---ChHhHHHHH---hcC--CCC
Confidence                     2223333334444556666666665432211    1222233332222   222222221   111  222


Q ss_pred             HHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhH
Q 006010          437 AFTYSSLMKGFFE--SGKGHKAVEIWKDMAKNNCVYNEVCYSV----LIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY  510 (664)
Q Consensus       437 ~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  510 (664)
                      ......+..++.+  ..+.+.+...+....... ..+...+..    +...+...+..+.+...+......+  .+....
T Consensus       212 ~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~  288 (450)
T d1qsaa1         212 DFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLI  288 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHH
T ss_pred             hhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHH
Confidence            3322222333222  346777777777766543 222222222    2222334566777777777766543  233333


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 006010          511 SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALK  590 (664)
Q Consensus       511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~  590 (664)
                      ...+......++...+...++.+  .. ...-...-...+..++...|+.++|...|..+..   .++   |...+.+-.
T Consensus       289 ~w~~~~al~~~~~~~~~~~~~~l--~~-~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa~~  359 (450)
T d1qsaa1         289 ERRVRMALGTGDRRGLNTWLARL--PM-EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAAQR  359 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHS--CT-TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHhc--Cc-ccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHHHH
Confidence            34444556678888888888876  21 1112233345677888888998888888888763   333   333333322


Q ss_pred             hhcc--C-----CCCchhhh-----HHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHH
Q 006010          591 EKLE--A-----PQDGTDFL-----NELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKC  658 (664)
Q Consensus       591 ~~~~--~-----~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  658 (664)
                      -..+  .     +......+     -.-+..+...|....|...+..+...   .++.....++....+.|.++.|+...
T Consensus       360 Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~  436 (450)
T d1qsaa1         360 IGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT  436 (450)
T ss_dssp             TTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHH
Confidence            1111  0     00111111     13346688999999999999988753   36777888899999999999998765


Q ss_pred             Hh
Q 006010          659 WS  660 (664)
Q Consensus       659 ~~  660 (664)
                      .+
T Consensus       437 ~~  438 (450)
T d1qsaa1         437 IA  438 (450)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.21  E-value=0.052  Score=41.53  Aligned_cols=82  Identities=9%  Similarity=-0.049  Sum_probs=47.5

Q ss_pred             CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----cCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH----
Q 006010          485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----AGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK----  556 (664)
Q Consensus       485 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  556 (664)
                      ..+.++|...+++..+.|   +......|...|..    ..+.++|.++|++..  +.+   ++.....|...|..    
T Consensus        36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~~g---~~~a~~~Lg~~y~~G~gv  107 (133)
T d1klxa_          36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC--GLN---DQDGCLILGYKQYAGKGV  107 (133)
T ss_dssp             TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--HTT---CHHHHHHHHHHHHHTSSS
T ss_pred             ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhh--ccC---cchHHHHHHHHHHcCCcc
Confidence            345666666666666654   33344445555543    345677777777773  333   34444555555554    


Q ss_pred             cCChhHHHHHHHHHHHCC
Q 006010          557 QSNISHSIDLLNSMMDRG  574 (664)
Q Consensus       557 ~g~~~~A~~~~~~~~~~~  574 (664)
                      ..+.++|..+|++..+.|
T Consensus       108 ~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         108 VKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CCCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHCC
Confidence            346777777777777655

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.07  E-value=0.061  Score=41.09  Aligned_cols=15  Identities=20%  Similarity=0.259  Sum_probs=6.6

Q ss_pred             ChHHHHHHHHHHHHC
Q 006010          312 NLDKAVSLLDRMVAS  326 (664)
Q Consensus       312 ~~~~a~~~~~~~~~~  326 (664)
                      +.++|.++|++..+.
T Consensus       110 d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_         110 NEKQAVKTFEKACRL  124 (133)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHC
Confidence            344444444444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.62  E-value=0.084  Score=38.92  Aligned_cols=67  Identities=12%  Similarity=0.035  Sum_probs=49.0

Q ss_pred             CChhHHHHHHHHHHhCCC---cchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010           81 LGDSTFYSLIQHYANSGD---FKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE  147 (664)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  147 (664)
                      +++.+-+....++.++.+   .+.++.+++.+.+.++......+..++.+|.+.|++++|++.++.+++.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            566777777777776644   4577788888876554434567778888888888888888888888764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.30  E-value=0.42  Score=35.06  Aligned_cols=79  Identities=8%  Similarity=0.072  Sum_probs=48.9

Q ss_pred             cCHHhHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCCCCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010          505 PDVVAYSSMIHGLCNAGS---VEEALKLFNEMLCLEPKSQPD-VFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV  580 (664)
Q Consensus       505 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  580 (664)
                      |...+--..+.++.+..+   .++|+.++++++..++   .+ ...+..+.-+|.+.|++++|...++++++  +.|+..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p---~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~  107 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK  107 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence            445555556666665543   5677777777754221   12 23555666777788888888888888877  677765


Q ss_pred             HHHHHHHh
Q 006010          581 TCNIFLTA  588 (664)
Q Consensus       581 ~~~~ll~~  588 (664)
                      -...+...
T Consensus       108 qA~~L~~~  115 (124)
T d2pqrb1         108 QVGALKSM  115 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444433

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=2.3  Score=39.93  Aligned_cols=417  Identities=11%  Similarity=0.024  Sum_probs=195.3

Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHH
Q 006010           88 SLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKR-TVKSFNSVLNVIIQ  166 (664)
Q Consensus        88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~  166 (664)
                      ..+....+.|+...+.++...+.  +.+..+..-..-+.........++...+++..    +..| ....-...+..+.+
T Consensus        11 ~~a~~a~~~~~~~~~~~~~~~L~--dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~----p~~P~~~~lr~~~l~~L~~   84 (450)
T d1qsaa1          11 AQIKQAWDNRQMDVVEQMMPGLK--DYPLYPYLEYRQITDDLMNQPAVTVTNFVRAN----PTLPPARTLQSRFVNELAR   84 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHSGGGT--TSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhhhc--CCCCHHHHHHHHHHhccccCCHHHHHHHHHHC----CCChhHHHHHHHHHHHHHh
Confidence            34455667777777776666663  22222211112222222334555554444332    1112 22223344556666


Q ss_pred             cCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010          167 EGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEA  246 (664)
Q Consensus       167 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  246 (664)
                      .++++.....+.        ..+.+...-.....+....|+.+.|.+.+..+-..| ...+                +.+
T Consensus        85 ~~~w~~~~~~~~--------~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p----------------~~c  139 (450)
T d1qsaa1          85 REDWRGLLAFSP--------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQP----------------NAC  139 (450)
T ss_dssp             TTCHHHHHHHCC--------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCC----------------THH
T ss_pred             ccCHHHHHHhcc--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCc----------------hHH
Confidence            676655444331        122344444455666667777777766665554333 1111                222


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010          247 VLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS  326 (664)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  326 (664)
                      ..+|..+...|. .+...+-.-+......|++..|..+...+...    ........+.....   ...+....   ...
T Consensus       140 ~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~---p~~~~~~~---~~~  208 (450)
T d1qsaa1         140 DKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANN---PNTVLTFA---RTT  208 (450)
T ss_dssp             HHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHC---GGGHHHHH---HHS
T ss_pred             HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhC---hHhHHHHH---hcC
Confidence            223333333322 23333333344445556666666655432111    12222333332221   12221111   111


Q ss_pred             CCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHHHHHcCCCC
Q 006010          327 KCMPNEVTYGTIINGLVK--LGRAVDGARVLMSMEERKFHVNEYIYSTLI----SGLFKEGKAEDAMKLWKQMMEKGCKP  400 (664)
Q Consensus       327 ~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~  400 (664)
                        ..+......+..++.+  ..+.+.+...+......... +......+-    ......+..+.+...+......+.  
T Consensus       209 --~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--  283 (450)
T d1qsaa1         209 --GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--  283 (450)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--
T ss_pred             --CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--
Confidence              1223222223333322  24566677766666554322 222222222    222234556667666666655432  


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010          401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIH  480 (664)
Q Consensus       401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  480 (664)
                      +.......+......+++..+...+..+.... .......--+..++...|+.+.|...|..+...   ++  -|..|..
T Consensus       284 ~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa  357 (450)
T d1qsaa1         284 STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA  357 (450)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHH
Confidence            33333444455566678887777777664331 223444455667777888888888888877642   33  2332221


Q ss_pred             HHHcCCChHHHHHHHHHHHhCCC--CcC-H---HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH
Q 006010          481 GLCEDGKLREARMVWTQMLSRGC--KPD-V---VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNAL  554 (664)
Q Consensus       481 ~~~~~g~~~~A~~~~~~~~~~~~--~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~  554 (664)
                      .  +.|..-.       +....+  .+. .   ..-...+..+...|....|...+..+.  ..   .+......+....
T Consensus       358 ~--~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~--~~---~~~~~~~~la~lA  423 (450)
T d1qsaa1         358 Q--RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLV--KS---KSKTEQAQLARYA  423 (450)
T ss_dssp             H--HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHH--TT---CCHHHHHHHHHHH
T ss_pred             H--HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHH--hC---CCHHHHHHHHHHH
Confidence            1  1111000       000000  000 0   001123455667888888888887773  22   2455566677777


Q ss_pred             HHcCChhHHHHHHHHHH
Q 006010          555 CKQSNISHSIDLLNSMM  571 (664)
Q Consensus       555 ~~~g~~~~A~~~~~~~~  571 (664)
                      .+.|.++.|+....+..
T Consensus       424 ~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         424 FNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             HHTTCHHHHHHHHHHTT
T ss_pred             HHCCChhHHHHHHHHHH
Confidence            88888888887777664

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.01  E-value=0.73  Score=33.44  Aligned_cols=140  Identities=11%  Similarity=0.048  Sum_probs=74.6

Q ss_pred             HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006010          129 GKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLV  208 (664)
Q Consensus       129 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  208 (664)
                      .-.|..++..++..+...    +.+..-||.++--....-+-+...+.++.+-+.    +  |.          ...++.
T Consensus        13 ildG~ve~Gveii~k~~~----ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~----F--Dl----------s~C~Nl   72 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY----F--DL----------DKCQNL   72 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----S--CG----------GGCSCT
T ss_pred             HHhhhHHhHHHHHHHHcc----cCCccccceeeeecccccchHHHHHHHHHHhhh----c--Cc----------hhhhcH
Confidence            345677777777776653    234445555555555555555555555554320    1  11          122333


Q ss_pred             hHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010          209 DNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM  288 (664)
Q Consensus       209 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  288 (664)
                      ......+-.+-.     +...+...++.+..+|+-++-.++++.+.+. -++++...-.+..+|-+.|...++.+++.+.
T Consensus        73 k~vv~C~~~~n~-----~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~A  146 (161)
T d1wy6a1          73 KSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA  146 (161)
T ss_dssp             HHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            333333322221     2234455556666666666666666665553 2556666666666777777777777777766


Q ss_pred             HHcCCC
Q 006010          289 FLKGCL  294 (664)
Q Consensus       289 ~~~g~~  294 (664)
                      -+.|.+
T Consensus       147 Ce~G~K  152 (161)
T d1wy6a1         147 CKKGEK  152 (161)
T ss_dssp             HHTTCH
T ss_pred             HHHhHH
Confidence            666653

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.10  E-value=1.1  Score=32.55  Aligned_cols=141  Identities=13%  Similarity=0.127  Sum_probs=92.1

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHH
Q 006010          412 LCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREA  491 (664)
Q Consensus       412 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  491 (664)
                      +.-.|..++..+++.+....   .+..-++.++.-....-+-+-..+.++.+-+.   .|.          ...++....
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~v   75 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV   75 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHH
Confidence            44567788888888777764   35556666666555556666666666655442   121          223334433


Q ss_pred             HHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010          492 RMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM  571 (664)
Q Consensus       492 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  571 (664)
                      ...+-.+     ..+.......++.+...|+-++-.++++.++  + ..+|++...-.+..+|.+.|+..++-+++.++-
T Consensus        76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~--k-n~~i~~~~llkia~A~kkig~~re~nell~~AC  147 (161)
T d1wy6a1          76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREIL--K-NNEVSASILVAIANALRRVGDERDATTLLIEAC  147 (161)
T ss_dssp             HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHH--h-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            3333222     2233455666777888889898889988873  3 456778888888899999999999999999998


Q ss_pred             HCCCC
Q 006010          572 DRGCD  576 (664)
Q Consensus       572 ~~~~~  576 (664)
                      +.|++
T Consensus       148 e~G~K  152 (161)
T d1wy6a1         148 KKGEK  152 (161)
T ss_dssp             HTTCH
T ss_pred             HHhHH
Confidence            88764

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.65  E-value=5.5  Score=27.21  Aligned_cols=61  Identities=15%  Similarity=0.210  Sum_probs=30.1

Q ss_pred             HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010          525 EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA  588 (664)
Q Consensus       525 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  588 (664)
                      ++.+-++.+  ......|++....+.+++|.+.+++.-|+++++..... +.++...|..+++.
T Consensus        24 e~rrgmN~l--~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqe   84 (105)
T d1v54e_          24 ELRKGMNTL--VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE   84 (105)
T ss_dssp             HHHHHHHHH--TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred             HHHHHHHHH--hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence            344444444  33345555555555555555555555555555555432 22333344444443